CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP045562	Lactobacillus fructivorans strain LF543 chromosome, complete genome	0 crisprs	cas3,DinG,DEDDh,csa3	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

453078 : 562928

107

Lactobacillus_phage(46.81%)

capsid,tRNA,terminase,head,protease,tail,portal,integrase

attL 460297:460314|attR 496176:496193

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010022802.1\|453078_455094_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	3.0e-118	40.1
WP_010022803.1\|455255_455450_+	hypothetical protein	NA	NA	NA	NA
WP_010022804.1\|455563_455830_+	phosphocarrier protein HPr	NA	NA	NA	NA
WP_010022805.1\|455831_457562_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
WP_010022806.1\|457664_458849_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_056936301.1\|458861_459884_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_010022810.1\|459888_460953_+	flippase-like domain-containing protein	NA	NA	NA	NA
460297:460314	attL	NA	NA	NA	NA
WP_010022811.1\|460954_463015_+	LTA synthase family protein	W6LM83	Streptococcus_phage	2.5e-149	45.0
WP_010021731.1\|470176_471541_+	hypothetical protein	NA	NA	NA	NA
WP_010021730.1\|471542_472778_+	cytosine deaminase	NA	NA	NA	NA
WP_010021729.1\|472854_473910_+	zinc-dependent alcohol dehydrogenase family protein	K7Z7U2	Megavirus	1.5e-25	26.8
WP_010021728.1\|474137_475439_+	uracil transporter	Q9KX94	Enterobacteria_phage	2.5e-62	36.7
WP_010021726.1\|475762_476542_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_010021724.1\|476572_477289_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_010021723.1\|477288_478026_+	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.5e-30	39.1
WP_010021722.1\|478061_478757_-	hypothetical protein	NA	NA	NA	NA
WP_010021721.1\|478944_480132_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	3.5e-143	67.9
WP_010021719.1\|480195_481665_+	MFS transporter	NA	NA	NA	NA
WP_010021717.1\|481661_482237_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	5.4e-41	47.4
WP_010021716.1\|482573_484991_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	69.3
WP_050780887.1\|485145_486756_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_010021714.1\|486808_487633_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_010021712.1\|487744_489148_+	dipeptidase PepV	NA	NA	NA	NA
WP_010021710.1\|489189_489822_-	deoxyadenosine kinase	C1KFI3	Lactobacillus_virus	1.2e-44	47.0
WP_010021709.1\|489979_490666_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_010021707.1\|490677_491307_+	miniconductance mechanosensitive channel MscM	NA	NA	NA	NA
WP_010021706.1\|491306_491807_+	hypothetical protein	A0A291I9Q0	Lactobacillus_phage	4.4e-47	59.5
WP_010021705.1\|491841_492069_-	hypothetical protein	NA	NA	NA	NA
WP_010021703.1\|493188_493350_+	hypothetical protein	NA	NA	NA	NA
WP_115791446.1\|493602_494460_+	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_010021700.1\|494850_495972_-\|integrase	site-specific integrase	D6PSS4	Lactobacillus_phage	1.4e-53	34.7
WP_010021699.1\|496112_496487_-	hypothetical protein	NA	NA	NA	NA
496176:496193	attR	NA	NA	NA	NA
WP_010021698.1\|496546_496900_-	hypothetical protein	A0A1B0Y2S4	Lactobacillus_phage	3.5e-14	34.5
WP_010021696.1\|497165_497486_-	hypothetical protein	NA	NA	NA	NA
WP_082587779.1\|497522_497930_-	helix-turn-helix transcriptional regulator	Q9T1J3	Lactobacillus_phage	9.8e-13	38.1
WP_010021688.1\|498109_498319_+	hypothetical protein	NA	NA	NA	NA
WP_010021687.1\|498324_498465_+	hypothetical protein	NA	NA	NA	NA
WP_010021683.1\|498870_499125_+	hypothetical protein	NA	NA	NA	NA
WP_029327108.1\|499105_499345_-	hypothetical protein	NA	NA	NA	NA
WP_010021681.1\|499408_499621_+	DUF2829 domain-containing protein	A0A0H3U4C7	Staphylococcus_phage	3.9e-05	40.8
WP_010021680.1\|499674_499881_+	hypothetical protein	NA	NA	NA	NA
WP_010021679.1\|499855_500377_-	hypothetical protein	NA	NA	NA	NA
WP_010021677.1\|500432_500690_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010021674.1\|500924_501404_+	hypothetical protein	A0A0A1EL06	Lactobacillus_phage	4.7e-22	41.8
WP_050780876.1\|501406_502147_+	DUF1071 domain-containing protein	X2CXM9	Lactobacillus_phage	4.4e-27	47.0
WP_010021672.1\|502143_502566_+	single-stranded DNA-binding protein	Q9AZV6	Lactococcus_phage	1.5e-27	46.8
WP_010021671.1\|502586_503402_+	hypothetical protein	Q9MC23	Lactococcus_phage	1.1e-18	43.8
WP_010021669.1\|503418_504147_+	phage regulatory protein/antirepressor Ant	B4XYR8	Lactobacillus_phage	8.3e-63	56.2
WP_081454146.1\|504130_504538_+	DUF1064 domain-containing protein	A0A1P8BMB7	Lactococcus_phage	5.2e-14	37.3
WP_010021667.1\|504550_504973_+	hypothetical protein	NA	NA	NA	NA
WP_010021666.1\|505298_505721_+	autolysin regulatory protein arpU	A8YQN1	Lactobacillus_phage	3.0e-12	33.3
WP_010021665.1\|506211_506727_+	HNH endonuclease	E9LUP7	Lactobacillus_phage	8.5e-46	57.3
WP_081454149.1\|507003_507507_+\|terminase	phage terminase small subunit P27 family	Q5K5J8	Oenococcus_phage	9.9e-31	57.9
WP_010021662.1\|507503_509390_+\|terminase	terminase large subunit	E9LUP9	Lactobacillus_phage	9.3e-215	57.9
WP_010021660.1\|509405_509603_+	DUF1056 family protein	E9LUQ0	Lactobacillus_phage	1.3e-07	46.9
WP_010021659.1\|509602_510712_+\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	3.6e-102	53.6
WP_010021658.1\|510731_511451_+\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	5.0e-36	40.9
WP_010021657.1\|511468_512695_+\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	1.6e-90	44.9
WP_010021655.1\|512700_513030_+\|head,tail	phage gp6-like head-tail connector protein	A0A2I6QQY5	Streptococcus_phage	5.7e-11	35.8
WP_081454145.1\|513007_513367_+\|head	phage head closure protein	A0A0M7RFE1	Lactobacillus_phage	1.2e-14	37.5
WP_010021652.1\|513356_513776_+	HK97 family phage protein	A0A0M7RDL2	Lactobacillus_phage	1.0e-12	43.1
WP_082587780.1\|513747_514140_+	DUF806 family protein	A0A286QP65	Streptococcus_phage	5.9e-07	31.1
WP_010021650.1\|514155_514749_+\|tail	major tail protein	Q9AZS2	Lactococcus_phage	1.1e-07	30.2
WP_029327105.1\|514852_515305_+	hypothetical protein	NA	NA	NA	NA
WP_010021648.1\|515361_515520_+	hypothetical protein	NA	NA	NA	NA
WP_010021647.1\|515536_520321_+	tape measure protein	E9LUR1	Lactobacillus_phage	4.3e-99	38.0
WP_010021644.1\|520320_521160_+\|tail	phage tail family protein	A0A0M7RF73	Lactobacillus_phage	1.1e-93	58.7
WP_010021643.1\|521171_522401_+	hypothetical protein	A0A0M9JJD9	Lactobacillus_phage	6.1e-90	41.2
WP_010021641.1\|522400_524188_+	minor structural protein, putative	A0A0M7RDS2	Lactobacillus_phage	3.0e-199	61.4
WP_010021639.1\|524200_524740_+	hypothetical protein	A0A0M7RFE2	Lactobacillus_phage	1.2e-34	43.8
WP_010021638.1\|524739_525255_+	hypothetical protein	NA	NA	NA	NA
WP_010021636.1\|525269_525773_+	hypothetical protein	NA	NA	NA	NA
WP_010021635.1\|525789_526185_+	hypothetical protein	NA	NA	NA	NA
WP_010021634.1\|526187_526334_+	XkdX family protein	NA	NA	NA	NA
WP_115791449.1\|526409_526469_+	hypothetical protein	NA	NA	NA	NA
WP_010021632.1\|526648_526921_+	hypothetical protein	NA	NA	NA	NA
WP_010021630.1\|526904_527840_+	N-acetylmuramidase	Q9MCC8	Lactobacillus_phage	8.2e-39	44.9
WP_010021627.1\|529330_529789_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_010021625.1\|529996_531544_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_010021624.1\|531533_532790_+	carboxylate--amine ligase	NA	NA	NA	NA
WP_056936272.1\|532794_533517_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_010021621.1\|533532_533868_-	DUF1516 family protein	NA	NA	NA	NA
WP_010021618.1\|534254_535946_+\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	1.4e-73	33.8
WP_010021617.1\|536051_538169_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_010021616.1\|538222_538570_+	hypothetical protein	NA	NA	NA	NA
WP_115791445.1\|538614_539841_+	DNA repair exonuclease	NA	NA	NA	NA
WP_010021614.1\|539830_542395_+	AAA family ATPase	NA	NA	NA	NA
WP_010021612.1\|542410_543370_+	HD domain-containing protein	NA	NA	NA	NA
WP_010021610.1\|543404_544289_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_010021609.1\|544408_544705_-	hypothetical protein	NA	NA	NA	NA
WP_010021608.1\|544708_545149_-	HIT family protein	D7NW73	Streptomyces_phage	1.6e-08	31.7
WP_010021607.1\|545268_546006_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.0e-19	28.0
WP_081454143.1\|545989_547213_+	ABC transporter permease	NA	NA	NA	NA
WP_010021605.1\|547222_547864_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_010021604.1\|547860_548184_-	hypothetical protein	NA	NA	NA	NA
WP_010021602.1\|548274_548598_+	thioredoxin family protein	NA	NA	NA	NA
WP_010021601.1\|548616_549255_+\|tRNA	DUF4479 and tRNA-binding domain-containing protein	NA	NA	NA	NA
WP_115791448.1\|549761_551588_+	DNA translocase FtsK	G1FGP1	Mycobacterium_phage	7.9e-86	50.3
WP_029327102.1\|551666_552998_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_010021598.1\|553011_553713_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_153218749.1\|553808_556472_+	DNA polymerase I	D9ZNH3	Clostridium_phage	6.0e-58	32.1
WP_010021596.1\|556484_557327_+	DNA-formamidopyrimidine glycosylase	G3MA33	Bacillus_virus	7.4e-31	32.8
WP_010021594.1\|557319_557910_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_010021591.1\|557927_558419_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_010021590.1\|558415_559759_+	replication initiation and membrane attachment protein	NA	NA	NA	NA
WP_010021589.1\|559761_560688_+	primosomal protein DnaI	S5MU12	Brevibacillus_phage	3.4e-29	35.6
WP_040472242.1\|560948_562928_+\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.4e-96	34.3

DBSCAN-SWA_2

668367 : 681046

Staphylococcus_phage(22.22%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010021437.1\|668367_669822_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A173GFL6	Erwinia_phage	2.7e-44	28.9
WP_010021436.1\|669837_670380_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA
WP_010021435.1\|670399_671332_-	tyrosine recombinase XerC	S5M872	Bacillus_phage	1.0e-17	28.8
WP_010021434.1\|671415_673533_-	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	3.0e-97	36.4
WP_056936279.1\|673623_674496_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	1.6e-20	33.3
WP_010021430.1\|674528_675293_-	ribonuclease HII	A0A0N9QYD4	Chrysochromulina_ericina_virus	1.2e-19	39.0
WP_010021429.1\|675282_676158_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_010021427.1\|676173_676395_-	YozE family protein	NA	NA	NA	NA
WP_010021426.1\|676409_676904_-	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	2.0e-23	34.8
WP_010021425.1\|676913_677864_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.3e-119	63.1
WP_010021424.1\|677891_679820_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2H4UUX5	Bodo_saltans_virus	1.1e-48	27.5
WP_010021423.1\|679834_681046_-\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	1.1e-48	33.6

DBSCAN-SWA_3

999969 : 1006330

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010021863.1\|999969_1000626_+	helix-turn-helix transcriptional regulator	D2XQ11	Bacillus_virus	1.5e-07	38.5
WP_010021862.1\|1000817_1002734_+	asparagine synthase (glutamine-hydrolyzing)	R4TIC1	Phaeocystis_globosa_virus	3.2e-29	27.8
WP_010021861.1\|1002832_1003426_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.7e-54	52.3
WP_010021859.1\|1003496_1004429_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	7.2e-51	38.8
WP_010021857.1\|1004440_1005448_-	YvcK family protein	A1IMD5	Streptococcus_phage	1.0e-90	53.3
WP_010021855.1\|1005448_1006330_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.3e-09	33.6

DBSCAN-SWA_4

1042420 : 1051517