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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP031784 Bacillus subtilis strain HMNig-2 chromosome, complete genome 2 crisprs WYL,csa3,DinG,cas3,DEDDh 0 1 12 0

Results visualization

1. NZ_CP031784
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031784_1 2147303-2147410 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031784_2 4164721-4164826 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP031784_1 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder 2147327-2147386 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
NZ_CP031784_1 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder 2147327-2147386 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
NZ_CP031784_1 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder 2147327-2147386 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
NZ_CP031784_1 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder 2147327-2147386 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
NZ_CP031784_1 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder 2147327-2147386 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
NZ_CP031784_1 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder 2147327-2147386 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
NZ_CP031784_1 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder 2147327-2147386 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
NZ_CP031784_1 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder 2147327-2147386 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
NZ_CP031784_1 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder 2147327-2147386 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 1.1|2147327|60|NZ_CP031784|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 265871 : 311597 56 Bacillus_phage(28.57%) coat,tRNA,protease NA
DBSCAN-SWA_2 363768 : 397870 46 Bacillus_phage(29.41%) terminase,plate,portal,holin NA
DBSCAN-SWA_3 916529 : 923094 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_4 1187975 : 1193505 8 Bacillus_phage(87.5%) NA NA
DBSCAN-SWA_5 1196559 : 1219285 34 Bacillus_phage(84.62%) NA NA
DBSCAN-SWA_6 1222318 : 1302984 100 Bacillus_phage(92.41%) holin,tail,integrase attL 1270349:1270365|attR 1290328:1290344
DBSCAN-SWA_7 1309490 : 1316744 9 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_8 1459475 : 1465570 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_9 1818794 : 1872273 56 uncultured_Mediterranean_phage(12.5%) coat,tRNA,protease NA
DBSCAN-SWA_10 2443584 : 2451319 9 Organic_Lake_phycodnavirus(50.0%) holin NA
DBSCAN-SWA_11 2828197 : 2908251 79 Bacillus_phage(25.0%) coat,tRNA,protease,bacteriocin NA
DBSCAN-SWA_12 3928550 : 3936916 8 Synechococcus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage