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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP043499 Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence 0 crisprs csa3,DEDDh 0 0 0 0
NZ_CP043498 Rhizobium grahamii strain BG7 chromosome, complete genome 1 crisprs csa3,WYL,cas3,DEDDh 0 1 3 0

Results visualization

1. NZ_CP043498
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043498_1 1126632-1126712 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP043498_1 1.1|1126659|27|NZ_CP043498|CRISPRCasFinder 1126659-1126685 27 NC_015583 Novosphingobium sp. PP1Y plasmid Mpl, complete sequence 387893-387919 4 0.852
NZ_CP043498_1 1.1|1126659|27|NZ_CP043498|CRISPRCasFinder 1126659-1126685 27 NZ_CP029830 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence 55972-55998 4 0.852
NZ_CP043498_1 1.1|1126659|27|NZ_CP043498|CRISPRCasFinder 1126659-1126685 27 NC_013855 Azospirillum sp. B510 plasmid pAB510a, complete sequence 1443404-1443430 4 0.852
NZ_CP043498_1 1.1|1126659|27|NZ_CP043498|CRISPRCasFinder 1126659-1126685 27 NZ_CP012915 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence 1212995-1213021 5 0.815
NZ_CP043498_1 1.1|1126659|27|NZ_CP043498|CRISPRCasFinder 1126659-1126685 27 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 1510076-1510102 5 0.815
NZ_CP043498_1 1.1|1126659|27|NZ_CP043498|CRISPRCasFinder 1126659-1126685 27 NZ_CP032340 Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence 919387-919413 5 0.815

1. spacer 1.1|1126659|27|NZ_CP043498|CRISPRCasFinder matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 4, identity: 0.852

gctggcaaggcagaagccgctgaaggc	CRISPR spacer
gctgccaaggcagaaaccgctgaagca	Protospacer
**** **********.*********  

2. spacer 1.1|1126659|27|NZ_CP043498|CRISPRCasFinder matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.852

gctggcaaggcagaagccgctgaaggc	CRISPR spacer
tccggcaaggcggaagccgctgaaagc	Protospacer
 *.********.************.**

3. spacer 1.1|1126659|27|NZ_CP043498|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 4, identity: 0.852

gctggcaaggcagaagccgctgaaggc	CRISPR spacer
gccggcaaggcggaagccgctgaaacc	Protospacer
**.********.************. *

4. spacer 1.1|1126659|27|NZ_CP043498|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 5, identity: 0.815

gctggcaaggcagaagccgctgaaggc	CRISPR spacer
cgtggcaaggcagaagccgccgaccgc	Protospacer
  ******************.**  **

5. spacer 1.1|1126659|27|NZ_CP043498|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 5, identity: 0.815

gctggcaaggcagaagccgctgaaggc	CRISPR spacer
cgtggcaaggcagaagccgccgaccgc	Protospacer
  ******************.**  **

6. spacer 1.1|1126659|27|NZ_CP043498|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.815

gctggcaaggcagaagccgctgaaggc	CRISPR spacer
cgtggcaaggcagaagccgccgaccgc	Protospacer
  ******************.**  **

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 577445 : 606194 33 Ectocarpus_siliculosus_virus(12.5%) capsid,tail,transposase,protease,head,portal NA
DBSCAN-SWA_2 1101552 : 1113704 12 uncultured_Mediterranean_phage(80.0%) tRNA NA
DBSCAN-SWA_3 1547060 : 1587715 45 Streptococcus_phage(28.57%) capsid,tail,protease,tRNA,head,integrase,portal attL 1568729:1568744|attR 1581740:1581755
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage