CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP045046	Campylobacter jejuni subsp. jejuni strain NADC 20827 plasmid p20827L, complete sequence	2 crisprs	NA	1	0
NZ_CP045047	Campylobacter jejuni subsp. jejuni strain NADC 20827 plasmid p20827S, complete sequence	0 crisprs	NA	0	0
NZ_CP045048	Campylobacter jejuni subsp. jejuni strain NADC 20827 chromosome, complete genome	1 crisprs	DEDDh,WYL,cas14j,cas2,cas9,csa3	5	4

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045046_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045046_1

18690-18788

Orphan

Consensus_repeat	Method
AAACTATTCTATTTATGTCAATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045046_1

>merge|NZ_CP045046|1|18690-18788|CRISPRCasFinder
TAACTATTCTATTTATGTCAATGTATCTTTTAAAGTCCCTATTTTCCATATGGGGTTTCCGAAAAAATGTCAAAAACTATTCTATTTATGTTAAAAACT

>NZ_CP045046|1|1|18690-18788|CRISPRCasFinder
TAACTATTCTATTTATGTCAATGTA	TCTTTTAAAGTCCCTATTTTCCATATGGGGTTTCCGAAAAAATGTCAA
AAACTATTCTATTTATGTTAAAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045046.1\|WP_023890766.1\|16381_16660_+\|EexN-family-lipoprotein	unknown	unknown	unknown
NZ_CP045046.1\|WP_052782976.1\|15044_16274_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226990
NZ_CP045046.1\|WP_002809140.1\|13377_13659_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045046.1\|WP_002809200.1\|19388_21182_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|316042
NZ_CP045046.1\|WP_002809302.1\|16820_17030_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045046.1\|WP_057980889.1\|23716_26485_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346
NZ_CP045046.1\|WP_002809051.1\|22572_22950_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225846
NZ_CP045046.1\|WP_011271769.1\|26495_27062_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NZ_CP045046.1\|WP_002826066.1\|14302_14962_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045046.1\|WP_002826068.1\|13687_14299_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045046.1\|WP_011187232.1\|11244_12633_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP045046.1\|WP_002809052.1\|22940_23264_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045046.1\|WP_087685918.1\|21185_21665_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045046.1\|WP_002809196.1\|19079_19298_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP045046.1\|WP_002808969.1\|17179_18352_-\|protein-kinase-family-protein	unknown	unknown	gnl\|CDD\|270622
NZ_CP045046.1\|WP_002809050.1\|21961_22576_-\|resolvase	unknown	unknown	gnl\|CDD\|184041
NZ_CP045046.1\|WP_002779777.1\|12632_13184_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045046.1\|WP_002869705.1\|23434_23698_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP045046.1\|WP_011271766.1\|10514_11219_-\|GNAT-family-N-acetyltransferase	unknown	unknown	unknown
NZ_CP045046.1\|WP_025006597.1\|21668_21860_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP045046.1\|WP_052782976.1\|15044_16274_+\|hypothetical-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	4.70597e-28
NZ_CP045046.1\|WP_002808969.1\|17179_18352_-\|protein-kinase-family-protein	gnl\|CDD\|270622	cd00180, PKc, Catalytic domain of Protein Kinases. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. PKs make up a large family of serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and more than 500 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase.	4.4139e-39
NZ_CP045046.1\|WP_011271769.1\|26495_27062_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	8.15405e-37
NZ_CP045046.1\|WP_002809200.1\|19388_21182_+\|AAA-family-ATPase	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	3.82726e-15
NZ_CP045046.1\|WP_002809050.1\|21961_22576_-\|resolvase	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	3.02098e-38
NZ_CP045046.1\|WP_002869705.1\|23434_23698_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	8.40975e-06
NZ_CP045046.1\|WP_002809051.1\|22572_22950_-\|hypothetical-protein	gnl\|CDD\|225846	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown].	6.64868e-09
NZ_CP045046.1\|WP_002809196.1\|19079_19298_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.70969e-11
NZ_CP045046.1\|WP_011187232.1\|11244_12633_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	2.31611e-05
NZ_CP045046.1\|WP_057980889.1\|23716_26485_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0

>NZ_CP045046.1|WP_002808969.1|17179_18352_-|protein-kinase-family-protein
MDPIVNNHLINAYKDLESSLSQAYTDLYFCFENGKLKLVLSTLHNNIIECFKKMNSRLPSTENSNNHYWADDSRKLKFNIELALYLQKEFKDSELSFWIDEYYYNVFKQCLNFLKSSEGSEIPLGMQKITIYEAIPIFVKLNSISNPEVNKNYSLDLIGDGSYAKVYKYYDEFYKHYFALKKLNKKVNDKEIQRFIKEFNIMKQINNPYILKVYSLDENKKEYIMEYVDFTLKEYIHKNNSKLSSDERISLGIQIIKGIKTLWNKNILHRDISLKNILIKQYDDIVVIKISDFGLVKELNSELTSENTEIKGSLNEISRLQKKGFNNYDKSDEIYALSRVLYFIATGRTNLINTKCDFLEKGINDNVKNRYNNLDDLMRDFKHYIKKIYN
>NZ_CP045046.1|WP_002809302.1|16820_17030_-|hypothetical-protein
MARDKSKDDNLFNCSQDYEHDHVVRQYPKEYQDKIRDFLKKACQNKKIYHSKHKEVYDLIEKELGYFTD
>NZ_CP045046.1|WP_023890766.1|16381_16660_+|EexN-family-lipoprotein
MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAQTDTECANAYKANYSKSLQNLHNEAISDEEATKYFKKK
>NZ_CP045046.1|WP_052782976.1|15044_16274_+|hypothetical-protein
MPQKRIYLYVPFKDKEKVKSLGAMWDDKEKKWFAPKSLDKNIFSQWLYPHQNKEFSFDENEVLTTFKSALENQGLIVDGLPIMDGKIHRVKTTTDKGREMSGAYSGFLDEYPAGFIQNFKTGIKENWKMPLENAKQNIVSYQTPSQKRLHNSTSNNTKQDILELQQKTALKIEEEYNQANWAHSNHPYLKKKGFSENFYLKQDNKGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTKEEKEQGIEYSAKKSGCFHLIGAKNLEYCKEFIIAEGFATAATIYKALNKPVIMGIDAGNLSKIVETLKNKFQNTPITLIADNDKKRELKGLSNVGVETAKEIQQKFSDIKVIIPKISNQEAEQGISDFNDIFLNKGIDEVKKQLNFIDFHNKLKSFKSMEKTQPEKEITR
>NZ_CP045046.1|WP_002826066.1|14302_14962_+|hypothetical-protein
MNNTINFNELFSQIRLSSYDNNIVKHYDNLKLVGKITPKIATLEIILRNKLDNKLSEQDSNWIKNSNDENIKKAKDEIEKREKNRILSHHQYLSRISLGTIIYLIKENRMQDSIMNLKNINFRNYNQYNRNFFLKNGKKRNFGNIYKVDIVLSLLQNLRNRSYHWENILKTTEKNGKHYPRLTTKIENVYIGINPQKIELFLDDLIKTFDERILKYCQD
>NZ_CP045046.1|WP_002826068.1|13687_14299_+|hypothetical-protein
MEKDYKIKVTDVSELNEQYKEAIQEGTYEGEDVNKFFNTIKTFDVAESLLKKDFSNQYIKFDIITDKEKIPLNIRLGDKNFQKGIEHLINIGSSKLIKENINPEIKKDLNNRLGIYKPKIYDEMLDGTFKAIKNLSEVANKDVGVMILEFANSYSETREKFEKKQINKSSFFKEKMNEFFKKKLNKILPDREISNEKTYSRSR
>NZ_CP045046.1|WP_002809140.1|13377_13659_+|hypothetical-protein
MFKESKLIEELKREYDEKLKKLRQKEKENKERIYKKFSSALFKDFEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKQ
>NZ_CP045046.1|WP_002779777.1|12632_13184_-|hypothetical-protein
MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSCDTDEKNKINDEISKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLLLNSIKNEKLFTNIEIDEFIKTRTEINAIGKNIYQLLKILRSGNSVKINENNLNKTMDNIRDKIDILSDQLGAIIEKNNERI
>NZ_CP045046.1|WP_011187232.1|11244_12633_-|relaxase/mobilization-nuclease-domain-containing-protein
MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNKDKYTKDIKTGKLVSKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDIYAGEDEILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMYPNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFANALNELGIEAKATNKKQREVEINQEFSVKLNTNNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSYYVSYKTKKGITTIWGQDLERVVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEVIKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRVLQELGNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGKRGRTDNSLRWTSARNNEITRNG
>NZ_CP045046.1|WP_011271766.1|10514_11219_-|GNAT-family-N-acetyltransferase
MKQEIYTSKFYISKRNGKEVCFKLDFEIKAFEENQKFYYVEIYAIIDYQYLKNEIAVIPNTNKNRNHWILRYDFNSWNFHSSIMLHSDYRSLGIGTFVINKMLEIALNYIPTARLSGKLSAVDEVKLENHIRRDKLYKNLGFVFNENNIGFSINSISNLKIRKDFDYIQEVRIFDMCNQLAELQYLKAGNDKLLKIYKEDFYKEKSKNDTLRARIKLMSFVLIALAVWIVYLLK
>NZ_CP045046.1|WP_002809196.1|19079_19298_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDRDRYFARILELEGCVSQGNTYEEALANIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NZ_CP045046.1|WP_002809200.1|19388_21182_+|AAA-family-ATPase
MPKRNTINTITLGIFSDENVSVICEDTIKLERGSVAVLSGNSEVGKSFLALKVCANAINDGLKPFFWSIEDKNKAILERIKNIENFYPFNSLEFEFSNELPKIDKEPMDSLKEELNELADCDLIVLDTFSAFFSILGFKDQNNQNDVQNFFNILTDVAKSNNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFQKGEDKSSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPLIKDVKVENIDNHTLEIINKKDISAVSVNDLAEGYVTMNENRGVFYLSSRKLADSNFYKYFKENDNKIEFGMLGANGSSYAITLKNSLLTQTHRSILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKAPSNYSWLKQKFTEISRFAYDLAFTQNIEDKDKKTITQRDKGILMFDSVERITKENGVIVSVFVLTVRREYIKRLETESTLSYDDDLSKILIDLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRLYKESSIISKQKKEIVKLKDKLIEFGINVYGKGVEFANYDDEFFYNQYKNENDLFFIYQSNNRVKRYIKRSDPMNQLNTKSNKFLLQKSLFD
>NZ_CP045046.1|WP_087685918.1|21185_21665_-|hypothetical-protein
MILDTITEIITLDRITEIITLDRITKIITIVGFCLAFFQLRNVIKNTKVNVLKTEFDIFGKISEKEKIFVDCYEQSMLSSEESKTQEYYSLYKKSKEQYLSELNLVCLYILEGYFTRKHFFQEYGSKIFSMYDEIKDKDYTSINKLCKKYRCELSKYKK
>NZ_CP045046.1|WP_025006597.1|21668_21860_-|hypothetical-protein
MNNNNIDNLKLYICNESYDYERVMKAFKGEQDLINKIQINQQNPNQSTKSKINQQNPNHTEQK
>NZ_CP045046.1|WP_002809050.1|21961_22576_-|resolvase
MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIILDEILEVKISSTKSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNSNNIKFLFLRQMELSNFNNPASKLILSVYAYLAENERDLISQRTKAGLENARASGKKLGRPKGSLNSIYDKDIDKIQTLLDKDLSIKSIWKLLYKDDGKSYDGLLWFIKKRKLKGN
>NZ_CP045046.1|WP_002809051.1|22572_22950_-|hypothetical-protein
MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCAKDFHQKLKEFTEKTPKNQKLKDLER
>NZ_CP045046.1|WP_002809052.1|22940_23264_-|hypothetical-protein
MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKINKETYHCKGDKYDLGCMTLFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEGEGIWE
>NZ_CP045046.1|WP_002869705.1|23434_23698_+|TrbC/VirB2-family-protein
MKKRLLSLILISPIFAFGAGGIDKVNTFMQNLSIALYALGGVLLTIALMWCASRIMYQGQTLREVAPVFIGGVIFGSASAIAGYIIT
>NZ_CP045046.1|WP_057980889.1|23716_26485_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MEKNPLFKGLTRPPMIFGVPMTPFVIAMGCIILIAFYSQNIFLVGFSIPVFFIMKAMTKRDDFIFRLMFLKMRFFSNPASKNYHKVKTYSTNSYRQMPPNSNFPKISVFGLNAEPNFEKLIPFSSLINDSVVITKDYLLMTTWEIGGISFEAEDDDELDIKNDLLNMLFKSFANEPVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLRKNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPKRLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLPSPIEQYLNGNLQNIQFGHDTIQFNQNDSTKKFARCIEIKDYTNETFAGILDILMYLDVEYTVTQSFSPIPRVDAKSAISKQKKQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTKMNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINYSSLIALHNFSMGKRDKNCWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGKFFLANTLILGQSSGGKTVFMNFIVDQMMKYASKDTFPDDIPEDKRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGFNPFMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISLLLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDDKDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSLEDFLKLKNAATLIEQSSTMVFLSNPKAKEEEYVKGVGLSYDEYMIIKGFNPVKRQFLIKRQDEKVICTLDLSPLGNENLKILSTETAYIDVIEKIFSQENKSLDEKVLELKEIYKNS
>NZ_CP045046.1|WP_011271769.1|26495_27062_+|Rha-family-transcriptional-regulator
MSNKVIINKQEVQFDTQNNQIFCTSLDVAKVFGKRHFHVLRDIENILNDLREIGTSQDLSNFGETYRNTEIRGFGKVKGKTRKDRCYNLTRDGFSLLAMGFTGKKALQFKIAFINAFNEMEKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVIITDNPYSKEAKNVFSLNYLVDNRTPKDPKKLQ

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP045046_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045046_2

19004-19069

Orphan

Consensus_repeat	Method
AAACTATTCTATTTATGTCAATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045046_2

>merge|NZ_CP045046|2|19004-19069|CRISPRCasFinder
AAACTATTCTATTTATATCAATTTTTGGGGTGTAAATTAATTGTTTGTTCTATTTATGTCAATAGT

>NZ_CP045046|2|2|19004-19069|CRISPRCasFinder
AAACTATTCTATTTATATCAATTTT	TGGGGTGTAAATTAAT
TGTTTGTTCTATTTATGTCAATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045046.1\|WP_023890766.1\|16381_16660_+\|EexN-family-lipoprotein	unknown	unknown	unknown
NZ_CP045046.1\|WP_052782976.1\|15044_16274_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226990
NZ_CP045046.1\|WP_002809140.1\|13377_13659_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045046.1\|WP_002809200.1\|19388_21182_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|316042
NZ_CP045046.1\|WP_002809302.1\|16820_17030_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045046.1\|WP_057980889.1\|23716_26485_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346
NZ_CP045046.1\|WP_002809051.1\|22572_22950_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225846
NZ_CP045046.1\|WP_011271769.1\|26495_27062_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NZ_CP045046.1\|WP_002826066.1\|14302_14962_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045046.1\|WP_002826068.1\|13687_14299_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045046.1\|WP_011187232.1\|11244_12633_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP045046.1\|WP_002809052.1\|22940_23264_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045046.1\|WP_087685918.1\|21185_21665_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045046.1\|WP_002809196.1\|19079_19298_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP045046.1\|WP_002808969.1\|17179_18352_-\|protein-kinase-family-protein	unknown	unknown	gnl\|CDD\|270622
NZ_CP045046.1\|WP_002809050.1\|21961_22576_-\|resolvase	unknown	unknown	gnl\|CDD\|184041
NZ_CP045046.1\|WP_002779777.1\|12632_13184_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045046.1\|WP_002869705.1\|23434_23698_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP045046.1\|WP_011271766.1\|10514_11219_-\|GNAT-family-N-acetyltransferase	unknown	unknown	unknown
NZ_CP045046.1\|WP_025006597.1\|21668_21860_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP045046.1\|WP_052782976.1\|15044_16274_+\|hypothetical-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	4.70597e-28
NZ_CP045046.1\|WP_002808969.1\|17179_18352_-\|protein-kinase-family-protein	gnl\|CDD\|270622	cd00180, PKc, Catalytic domain of Protein Kinases. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. PKs make up a large family of serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and more than 500 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase.	4.4139e-39
NZ_CP045046.1\|WP_011271769.1\|26495_27062_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	8.15405e-37
NZ_CP045046.1\|WP_002809200.1\|19388_21182_+\|AAA-family-ATPase	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	3.82726e-15
NZ_CP045046.1\|WP_002809050.1\|21961_22576_-\|resolvase	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	3.02098e-38
NZ_CP045046.1\|WP_002869705.1\|23434_23698_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	8.40975e-06
NZ_CP045046.1\|WP_002809051.1\|22572_22950_-\|hypothetical-protein	gnl\|CDD\|225846	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown].	6.64868e-09
NZ_CP045046.1\|WP_002809196.1\|19079_19298_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.70969e-11
NZ_CP045046.1\|WP_011187232.1\|11244_12633_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	2.31611e-05
NZ_CP045046.1\|WP_057980889.1\|23716_26485_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0

>NZ_CP045046.1|WP_002808969.1|17179_18352_-|protein-kinase-family-protein
MDPIVNNHLINAYKDLESSLSQAYTDLYFCFENGKLKLVLSTLHNNIIECFKKMNSRLPSTENSNNHYWADDSRKLKFNIELALYLQKEFKDSELSFWIDEYYYNVFKQCLNFLKSSEGSEIPLGMQKITIYEAIPIFVKLNSISNPEVNKNYSLDLIGDGSYAKVYKYYDEFYKHYFALKKLNKKVNDKEIQRFIKEFNIMKQINNPYILKVYSLDENKKEYIMEYVDFTLKEYIHKNNSKLSSDERISLGIQIIKGIKTLWNKNILHRDISLKNILIKQYDDIVVIKISDFGLVKELNSELTSENTEIKGSLNEISRLQKKGFNNYDKSDEIYALSRVLYFIATGRTNLINTKCDFLEKGINDNVKNRYNNLDDLMRDFKHYIKKIYN
>NZ_CP045046.1|WP_002809302.1|16820_17030_-|hypothetical-protein
MARDKSKDDNLFNCSQDYEHDHVVRQYPKEYQDKIRDFLKKACQNKKIYHSKHKEVYDLIEKELGYFTD
>NZ_CP045046.1|WP_023890766.1|16381_16660_+|EexN-family-lipoprotein
MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAQTDTECANAYKANYSKSLQNLHNEAISDEEATKYFKKK
>NZ_CP045046.1|WP_052782976.1|15044_16274_+|hypothetical-protein
MPQKRIYLYVPFKDKEKVKSLGAMWDDKEKKWFAPKSLDKNIFSQWLYPHQNKEFSFDENEVLTTFKSALENQGLIVDGLPIMDGKIHRVKTTTDKGREMSGAYSGFLDEYPAGFIQNFKTGIKENWKMPLENAKQNIVSYQTPSQKRLHNSTSNNTKQDILELQQKTALKIEEEYNQANWAHSNHPYLKKKGFSENFYLKQDNKGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTKEEKEQGIEYSAKKSGCFHLIGAKNLEYCKEFIIAEGFATAATIYKALNKPVIMGIDAGNLSKIVETLKNKFQNTPITLIADNDKKRELKGLSNVGVETAKEIQQKFSDIKVIIPKISNQEAEQGISDFNDIFLNKGIDEVKKQLNFIDFHNKLKSFKSMEKTQPEKEITR
>NZ_CP045046.1|WP_002826066.1|14302_14962_+|hypothetical-protein
MNNTINFNELFSQIRLSSYDNNIVKHYDNLKLVGKITPKIATLEIILRNKLDNKLSEQDSNWIKNSNDENIKKAKDEIEKREKNRILSHHQYLSRISLGTIIYLIKENRMQDSIMNLKNINFRNYNQYNRNFFLKNGKKRNFGNIYKVDIVLSLLQNLRNRSYHWENILKTTEKNGKHYPRLTTKIENVYIGINPQKIELFLDDLIKTFDERILKYCQD
>NZ_CP045046.1|WP_002826068.1|13687_14299_+|hypothetical-protein
MEKDYKIKVTDVSELNEQYKEAIQEGTYEGEDVNKFFNTIKTFDVAESLLKKDFSNQYIKFDIITDKEKIPLNIRLGDKNFQKGIEHLINIGSSKLIKENINPEIKKDLNNRLGIYKPKIYDEMLDGTFKAIKNLSEVANKDVGVMILEFANSYSETREKFEKKQINKSSFFKEKMNEFFKKKLNKILPDREISNEKTYSRSR
>NZ_CP045046.1|WP_002809140.1|13377_13659_+|hypothetical-protein
MFKESKLIEELKREYDEKLKKLRQKEKENKERIYKKFSSALFKDFEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKQ
>NZ_CP045046.1|WP_002779777.1|12632_13184_-|hypothetical-protein
MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSCDTDEKNKINDEISKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLLLNSIKNEKLFTNIEIDEFIKTRTEINAIGKNIYQLLKILRSGNSVKINENNLNKTMDNIRDKIDILSDQLGAIIEKNNERI
>NZ_CP045046.1|WP_011187232.1|11244_12633_-|relaxase/mobilization-nuclease-domain-containing-protein
MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNKDKYTKDIKTGKLVSKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDIYAGEDEILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMYPNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFANALNELGIEAKATNKKQREVEINQEFSVKLNTNNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSYYVSYKTKKGITTIWGQDLERVVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEVIKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRVLQELGNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGKRGRTDNSLRWTSARNNEITRNG
>NZ_CP045046.1|WP_011271766.1|10514_11219_-|GNAT-family-N-acetyltransferase
MKQEIYTSKFYISKRNGKEVCFKLDFEIKAFEENQKFYYVEIYAIIDYQYLKNEIAVIPNTNKNRNHWILRYDFNSWNFHSSIMLHSDYRSLGIGTFVINKMLEIALNYIPTARLSGKLSAVDEVKLENHIRRDKLYKNLGFVFNENNIGFSINSISNLKIRKDFDYIQEVRIFDMCNQLAELQYLKAGNDKLLKIYKEDFYKEKSKNDTLRARIKLMSFVLIALAVWIVYLLK
>NZ_CP045046.1|WP_002809196.1|19079_19298_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDRDRYFARILELEGCVSQGNTYEEALANIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NZ_CP045046.1|WP_002809200.1|19388_21182_+|AAA-family-ATPase
MPKRNTINTITLGIFSDENVSVICEDTIKLERGSVAVLSGNSEVGKSFLALKVCANAINDGLKPFFWSIEDKNKAILERIKNIENFYPFNSLEFEFSNELPKIDKEPMDSLKEELNELADCDLIVLDTFSAFFSILGFKDQNNQNDVQNFFNILTDVAKSNNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFQKGEDKSSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPLIKDVKVENIDNHTLEIINKKDISAVSVNDLAEGYVTMNENRGVFYLSSRKLADSNFYKYFKENDNKIEFGMLGANGSSYAITLKNSLLTQTHRSILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKAPSNYSWLKQKFTEISRFAYDLAFTQNIEDKDKKTITQRDKGILMFDSVERITKENGVIVSVFVLTVRREYIKRLETESTLSYDDDLSKILIDLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRLYKESSIISKQKKEIVKLKDKLIEFGINVYGKGVEFANYDDEFFYNQYKNENDLFFIYQSNNRVKRYIKRSDPMNQLNTKSNKFLLQKSLFD
>NZ_CP045046.1|WP_087685918.1|21185_21665_-|hypothetical-protein
MILDTITEIITLDRITEIITLDRITKIITIVGFCLAFFQLRNVIKNTKVNVLKTEFDIFGKISEKEKIFVDCYEQSMLSSEESKTQEYYSLYKKSKEQYLSELNLVCLYILEGYFTRKHFFQEYGSKIFSMYDEIKDKDYTSINKLCKKYRCELSKYKK
>NZ_CP045046.1|WP_025006597.1|21668_21860_-|hypothetical-protein
MNNNNIDNLKLYICNESYDYERVMKAFKGEQDLINKIQINQQNPNQSTKSKINQQNPNHTEQK
>NZ_CP045046.1|WP_002809050.1|21961_22576_-|resolvase
MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIILDEILEVKISSTKSQEKRKIKDLKQKLKAGDLLIATELSRLGRSMLEIINLVLEFNSNNIKFLFLRQMELSNFNNPASKLILSVYAYLAENERDLISQRTKAGLENARASGKKLGRPKGSLNSIYDKDIDKIQTLLDKDLSIKSIWKLLYKDDGKSYDGLLWFIKKRKLKGN
>NZ_CP045046.1|WP_002809051.1|22572_22950_-|hypothetical-protein
MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPINERRVIRIVNKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCAKDFHQKLKEFTEKTPKNQKLKDLER
>NZ_CP045046.1|WP_002809052.1|22940_23264_-|hypothetical-protein
MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKINKETYHCKGDKYDLGCMTLFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEGEGIWE
>NZ_CP045046.1|WP_002869705.1|23434_23698_+|TrbC/VirB2-family-protein
MKKRLLSLILISPIFAFGAGGIDKVNTFMQNLSIALYALGGVLLTIALMWCASRIMYQGQTLREVAPVFIGGVIFGSASAIAGYIIT
>NZ_CP045046.1|WP_057980889.1|23716_26485_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MEKNPLFKGLTRPPMIFGVPMTPFVIAMGCIILIAFYSQNIFLVGFSIPVFFIMKAMTKRDDFIFRLMFLKMRFFSNPASKNYHKVKTYSTNSYRQMPPNSNFPKISVFGLNAEPNFEKLIPFSSLINDSVVITKDYLLMTTWEIGGISFEAEDDDELDIKNDLLNMLFKSFANEPVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLRKNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPKRLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLPSPIEQYLNGNLQNIQFGHDTIQFNQNDSTKKFARCIEIKDYTNETFAGILDILMYLDVEYTVTQSFSPIPRVDAKSAISKQKKQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTKMNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINYSSLIALHNFSMGKRDKNCWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGKFFLANTLILGQSSGGKTVFMNFIVDQMMKYASKDTFPDDIPEDKRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGFNPFMVESTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISLLLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDDKDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSLEDFLKLKNAATLIEQSSTMVFLSNPKAKEEEYVKGVGLSYDEYMIIKGFNPVKRQFLIKRQDEKVICTLDLSPLGNENLKILSTETAYIDVIEKIFSQENKSLDEKVLELKEIYKNS
>NZ_CP045046.1|WP_011271769.1|26495_27062_+|Rha-family-transcriptional-regulator
MSNKVIINKQEVQFDTQNNQIFCTSLDVAKVFGKRHFHVLRDIENILNDLREIGTSQDLSNFGETYRNTEIRGFGKVKGKTRKDRCYNLTRDGFSLLAMGFTGKKALQFKIAFINAFNEMEKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVIITDNPYSKEAKNVFSLNYLVDNRTPKDPKKLQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP045046_1	1.1\|18715\|48\|NZ_CP045046\|CRISPRCasFinder	18715-18762	48	NZ_CP022078	Campylobacter jejuni strain FDAARGOS_265 plasmid unnamed1, complete sequence	956-1003	1.0
NZ_CP045046_1	1.1\|18715\|48\|NZ_CP045046\|CRISPRCasFinder	18715-18762	48	NZ_CP045046	Campylobacter jejuni subsp. jejuni strain NADC 20827 plasmid p20827L, complete sequence	18715-18762	1.0
NZ_CP045046_1	1.1\|18715\|48\|NZ_CP045046\|CRISPRCasFinder	18715-18762	48	NZ_CP017857	Campylobacter jejuni strain YQ2210 plasmid pCJDM210L, complete sequence	20867-20914	1.0
NZ_CP045046_1	1.1\|18715\|48\|NZ_CP045046\|CRISPRCasFinder	18715-18762	48	NZ_CP017854	Campylobacter jejuni strain ZP3204 plasmid pCJDM204L, complete sequence	3962-4009	1.0
NZ_CP045046_1	1.1\|18715\|48\|NZ_CP045046\|CRISPRCasFinder	18715-18762	48	NZ_CP028186	Campylobacter jejuni strain CFSAN054107 plasmid pGMI16-002, complete sequence	37797-37844	1.0
NZ_CP045046_1	1.1\|18715\|48\|NZ_CP045046\|CRISPRCasFinder	18715-18762	48	CP013735	Campylobacter coli strain OR12 plasmid pOR12TET, complete sequence	3665-3712	1.0
NZ_CP045046_1	1.1\|18715\|48\|NZ_CP045046\|CRISPRCasFinder	18715-18762	48	CP047483	Campylobacter jejuni strain CFSAN096297 plasmid CFSAN096297, complete sequence	46123-46170	1.0
NZ_CP045046_1	1.1\|18715\|48\|NZ_CP045046\|CRISPRCasFinder	18715-18762	48	NZ_CP044170	Campylobacter jejuni strain AR-0413 plasmid pAR-0413-1, complete sequence	19101-19148	1.0
NZ_CP045046_1	1.1\|18715\|48\|NZ_CP045046\|CRISPRCasFinder	18715-18762	48	NZ_MK541987	Campylobacter coli strain CVM N46788F plasmid pN46788F, complete sequence	22344-22391	1.0

1. spacer 1.1|18715|48|NZ_CP045046|CRISPRCasFinder matches to NZ_CP022078 (Campylobacter jejuni strain FDAARGOS_265 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

2. spacer 1.1|18715|48|NZ_CP045046|CRISPRCasFinder matches to NZ_CP045046 (Campylobacter jejuni subsp. jejuni strain NADC 20827 plasmid p20827L, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

3. spacer 1.1|18715|48|NZ_CP045046|CRISPRCasFinder matches to NZ_CP017857 (Campylobacter jejuni strain YQ2210 plasmid pCJDM210L, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

4. spacer 1.1|18715|48|NZ_CP045046|CRISPRCasFinder matches to NZ_CP017854 (Campylobacter jejuni strain ZP3204 plasmid pCJDM204L, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

5. spacer 1.1|18715|48|NZ_CP045046|CRISPRCasFinder matches to NZ_CP028186 (Campylobacter jejuni strain CFSAN054107 plasmid pGMI16-002, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

6. spacer 1.1|18715|48|NZ_CP045046|CRISPRCasFinder matches to CP013735 (Campylobacter coli strain OR12 plasmid pOR12TET, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

7. spacer 1.1|18715|48|NZ_CP045046|CRISPRCasFinder matches to CP047483 (Campylobacter jejuni strain CFSAN096297 plasmid CFSAN096297, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

8. spacer 1.1|18715|48|NZ_CP045046|CRISPRCasFinder matches to NZ_CP044170 (Campylobacter jejuni strain AR-0413 plasmid pAR-0413-1, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

9. spacer 1.1|18715|48|NZ_CP045046|CRISPRCasFinder matches to NZ_MK541987 (Campylobacter coli strain CVM N46788F plasmid pN46788F, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	CRISPR spacer
tcttttaaagtccctattttccatatggggtttccgaaaaaatgtcaa	Protospacer
************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP045048

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045048_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045048_1

1620623-1620859

orTypeII

Consensus_repeat	Method
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	CRISPRCasFinder
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	CRT
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAG	PILER-CR

3 spacers

cas2,cas9

The CRISPR arrays of NZ_CP045048_1

>merge|NZ_CP045048|1|1620623-1620859|CRISPRCasFinder,CRT,PILER-CR
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATACTTCCCCTGTTGATGATGGCAGTTATAGAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAGTTTTATTATAGCGAGACATAGCCCACCAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAACTTTGGAAAAGACTAAGAATGATTTAAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAG

>NZ_CP045048|1|1|1620623-1620858|CRISPRCasFinder
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	CTTCCCCTGTTGATGATGGCAGTTATAG
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	GTTTTATTATAGCGAGACATAGCCCACC
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	ACTTTGGAAAAGACTAAGAATGATTTAA
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

>NZ_CP045048|1|1|1620623-1620858|CRT
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	CTTCCCCTGTTGATGATGGCAGTTATAG
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	GTTTTATTATAGCGAGACATAGCCCACC
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	ACTTTGGAAAAGACTAAGAATGATTTAA
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

>NZ_CP045048|1|1|1620689-1620859|PILER-CR
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAG	TTTTATTATAGCGAGACATAGCCCACC
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAA	CTTTGGAAAAGACTAAGAATGATTTAA
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045048.1\|WP_002851320.1\|1626935_1627925_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP045048.1\|WP_002780988.1\|1621001_1621433_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP045048.1\|WP_002851173.1\|1628587_1629337_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP045048.1\|WP_070317371.1\|1622302_1625266_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP045048.1\|WP_038816767.1\|1631717_1632938_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235168
NZ_CP045048.1\|WP_002851264.1\|1611199_1611841_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP045048.1\|WP_153257530.1\|1617098_1618640_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP045048.1\|WP_002851523.1\|1627985_1628591_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP045048.1\|WP_002860681.1\|1632931_1633756_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|273443
NZ_CP045048.1\|WP_002867229.1\|1610270_1611203_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NZ_CP045048.1\|WP_002851546.1\|1631141_1631591_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP045048.1\|WP_002851537.1\|1614641_1614833_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP045048.1\|WP_153257529.1\|1615826_1616975_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP045048.1\|WP_002912466.1\|1619313_1620504_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP045048.1\|WP_002851155.1\|1630039_1631077_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP045048.1\|WP_002851407.1\|1629311_1630043_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|225539
NZ_CP045048.1\|WP_002857949.1\|1618641_1618863_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP045048.1\|WP_153257528.1\|1611837_1614642_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239153
NZ_CP045048.1\|WP_002851502.1\|1614807_1615521_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP045048.1\|WP_002781229.1\|1618863_1619310_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391

Protein	Function_ID	Function_description	E-value
NZ_CP045048.1\|WP_002851320.1\|1626935_1627925_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP045048.1\|WP_002780988.1\|1621001_1621433_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	6.96465e-59
NZ_CP045048.1\|WP_002851173.1\|1628587_1629337_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.97072e-93
NZ_CP045048.1\|WP_070317371.1\|1622302_1625266_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP045048.1\|WP_038816767.1\|1631717_1632938_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP045048.1\|WP_002851264.1\|1611199_1611841_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP045048.1\|WP_153257530.1\|1617098_1618640_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	5.81817e-120
NZ_CP045048.1\|WP_002851523.1\|1627985_1628591_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	5.24929e-70
NZ_CP045048.1\|WP_002860681.1\|1632931_1633756_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|273443	TIGR01099, UTP--glucose-1-phosphate_uridylyltransferase, UTP--glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.7372e-162
NZ_CP045048.1\|WP_002867229.1\|1610270_1611203_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	5.55833e-86
NZ_CP045048.1\|WP_002851546.1\|1631141_1631591_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_CP045048.1\|WP_002851537.1\|1614641_1614833_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP045048.1\|WP_153257529.1\|1615826_1616975_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP045048.1\|WP_002912466.1\|1619313_1620504_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	9.65163e-141
NZ_CP045048.1\|WP_002851155.1\|1630039_1631077_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.54942e-34
NZ_CP045048.1\|WP_002851407.1\|1629311_1630043_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	2.12305e-102
NZ_CP045048.1\|WP_002857949.1\|1618641_1618863_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	2.76562e-11
NZ_CP045048.1\|WP_153257528.1\|1611837_1614642_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP045048.1\|WP_002851502.1\|1614807_1615521_-\|hypothetical-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NZ_CP045048.1\|WP_002781229.1\|1618863_1619310_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43

>NZ_CP045048.1|WP_002912466.1|1619313_1620504_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIKFENGRILANLEGKKEGSSAIINNLNNKAALMVAPKECEILENESLVDIIFMP
>NZ_CP045048.1|WP_002781229.1|1618863_1619310_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP045048.1|WP_002857949.1|1618641_1618863_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFNENTKLKDGDKIALLPPVCGG
>NZ_CP045048.1|WP_153257530.1|1617098_1618640_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVEEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP045048.1|WP_153257529.1|1615826_1616975_-|carboxynorspermidine-decarboxylase
MFYENIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_CP045048.1|WP_002851502.1|1614807_1615521_-|hypothetical-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP045048.1|WP_002851537.1|1614641_1614833_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP045048.1|WP_153257528.1|1611837_1614642_-|molybdopterin-dependent-oxidoreductase
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSTQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPQLAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDEK
>NZ_CP045048.1|WP_002851264.1|1611199_1611841_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP045048.1|WP_002867229.1|1610270_1611203_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRMLPASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP045048.1|WP_002780988.1|1621001_1621433_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF
>NZ_CP045048.1|WP_070317371.1|1622302_1625266_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGDHSLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKDFKDRNLNDTRYIVRLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKNELR
>NZ_CP045048.1|WP_002851320.1|1626935_1627925_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKILENSDAFIIGEICINEGIVLE
>NZ_CP045048.1|WP_002851523.1|1627985_1628591_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFSLKNLLKKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGNM
>NZ_CP045048.1|WP_002851173.1|1628587_1629337_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFF
>NZ_CP045048.1|WP_002851407.1|1629311_1630043_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKPIIIFFSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP045048.1|WP_002851155.1|1630039_1631077_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF
>NZ_CP045048.1|WP_002851546.1|1631141_1631591_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NZ_CP045048.1|WP_038816767.1|1631717_1632938_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLDIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS
>NZ_CP045048.1|WP_002860681.1|1632931_1633756_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEALEAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQNQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVMEVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILENTKAGKNGEVQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045048_1	1.2\|1620727\|28\|NZ_CP045048\|CRISPRCasFinder,CRT	1620727-1620754	28	MN530981	Campylobacter phage DA10, complete genome	17217-17244	0	1.0
NZ_CP045048_1	1.4\|1620728\|27\|NZ_CP045048\|PILER-CR	1620728-1620754	27	MN530981	Campylobacter phage DA10, complete genome	17218-17244	0	1.0
NZ_CP045048_1	1.1\|1620661\|28\|NZ_CP045048\|CRISPRCasFinder,CRT	1620661-1620688	28	MN530981	Campylobacter phage DA10, complete genome	5994-6021	1	0.964
NZ_CP045048_1	1.3\|1620793\|28\|NZ_CP045048\|CRISPRCasFinder,CRT	1620793-1620820	28	MN530981	Campylobacter phage DA10, complete genome	33265-33292	1	0.964
NZ_CP045048_1	1.5\|1620794\|27\|NZ_CP045048\|PILER-CR	1620794-1620820	27	MN530981	Campylobacter phage DA10, complete genome	33265-33291	1	0.963
NZ_CP045048_1	1.1\|1620661\|28\|NZ_CP045048\|CRISPRCasFinder,CRT	1620661-1620688	28	MG945660	UNVERIFIED: Microviridae sp. isolate 21385-1502, partial genome	3367-3394	4	0.857
NZ_CP045048_1	1.1\|1620661\|28\|NZ_CP045048\|CRISPRCasFinder,CRT	1620661-1620688	28	MH885472	Phage PBKP05, complete genome	28814-28841	7	0.75
NZ_CP045048_1	1.1\|1620661\|28\|NZ_CP045048\|CRISPRCasFinder,CRT	1620661-1620688	28	NC_047849	Klebsiella phage AltoGao, complete genome	41117-41144	7	0.75

1. spacer 1.2|1620727|28|NZ_CP045048|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

gttttattatagcgagacatagcccacc	CRISPR spacer
gttttattatagcgagacatagcccacc	Protospacer
****************************

2. spacer 1.4|1620728|27|NZ_CP045048|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ttttattatagcgagacatagcccacc	CRISPR spacer
ttttattatagcgagacatagcccacc	Protospacer
***************************

3. spacer 1.1|1620661|28|NZ_CP045048|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.964

cttcccctgttgatgatggcagttatag	CRISPR spacer
cttcccctgttgatgatggtagttatag	Protospacer
*******************.********

4. spacer 1.3|1620793|28|NZ_CP045048|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.964

actttggaaaagactaagaatgatttaa	CRISPR spacer
actttggaaaaaactaagaatgatttaa	Protospacer
***********.****************

5. spacer 1.5|1620794|27|NZ_CP045048|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.963

ctttggaaaagactaagaatgatttaa	CRISPR spacer
ctttggaaaaaactaagaatgatttaa	Protospacer
**********.****************

6. spacer 1.1|1620661|28|NZ_CP045048|CRISPRCasFinder,CRT matches to MG945660 (UNVERIFIED: Microviridae sp. isolate 21385-1502, partial genome) position: , mismatch: 4, identity: 0.857

cttcccctgttgatgatggcagttatag	CRISPR spacer
ctacccctgttgatgatggcagtcctac	Protospacer
** ********************. **

7. spacer 1.1|1620661|28|NZ_CP045048|CRISPRCasFinder,CRT matches to MH885472 (Phage PBKP05, complete genome) position: , mismatch: 7, identity: 0.75

cttcccctgttgatgatggcagttatag	CRISPR spacer
gcacagctgttgatgatggcggttatat	Protospacer
 . *  **************.******

8. spacer 1.1|1620661|28|NZ_CP045048|CRISPRCasFinder,CRT matches to NC_047849 (Klebsiella phage AltoGao, complete genome) position: , mismatch: 7, identity: 0.75

cttcccctgttgatgatggcagttatag	CRISPR spacer
gcacagctgttgatgatggcggttatat	Protospacer
 . *  **************.******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

284122 : 346611

Campylobacter_phage(89.83%)

integrase,head,tail,tRNA,capsid,portal,terminase

attL 328037:328055|attR 354235:354253

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002857525.1\|284122_284668_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_002868747.1\|284669_285728_+	LptF/LptG family permease	NA	NA	NA	NA
WP_002867747.1\|285771_286980_+	diaminopimelate decarboxylase	A0A060D2X4	Bovine_gammaherpesvirus	1.1e-22	27.7
WP_002867748.1\|286981_287749_+	HAD-IIA family hydrolase	NA	NA	NA	NA
WP_032582615.1\|287736_288810_+	prephenate dehydratase	NA	NA	NA	NA
WP_032582617.1\|288799_289894_+	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	5.7e-15	26.4
WP_032582619.1\|289945_291628_+	flagellar basal body M-ring protein FliF	NA	NA	NA	NA
WP_002854670.1\|291627_292656_+	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_002867751.1\|292663_293494_+	flagellar assembly protein FliH	NA	NA	NA	NA
WP_002867752.1\|293486_295334_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
WP_002876900.1\|295419_295830_+	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA
WP_011049660.1\|295875_297072_+	hypothetical protein	NA	NA	NA	NA
WP_002859428.1\|297074_297782_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_002859429.1\|297778_298942_+	exodeoxyribonuclease VII large subunit	A0A1V0SIT1	Klosneuvirus	5.3e-43	32.2
WP_070317317.1\|298951_300028_+	phosphoserine transaminase	M1Q1P2	Streptococcus_phage	1.5e-71	40.1
WP_002860306.1\|300024_300375_+	RidA family protein	NA	NA	NA	NA
WP_002869731.1\|300371_301346_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_002860304.1\|301338_302325_-	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_002858674.1\|302330_302477_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_002857618.1\|302500_302854_-	hypothetical protein	NA	NA	NA	NA
WP_002854376.1\|302854_303268_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	3.4e-21	42.6
WP_057041150.1\|303380_303665_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_002854219.1\|303871_304468_+	peroxiredoxin	NA	NA	NA	NA
WP_153257466.1\|304586_305660_+	flagellar biosynthesis protein FlhB	NA	NA	NA	NA
WP_002788257.1\|306056_306347_+	hypothetical protein	X2KM44	Campylobacter_phage	2.6e-15	97.4
WP_002869973.1\|306333_306684_+	HNH endonuclease	X2KRF8	Campylobacter_phage	1.9e-65	100.0
WP_002913306.1\|306934_307573_+\|terminase	terminase	X2KXE9	Campylobacter_phage	1.9e-111	100.0
WP_002913304.1\|307576_309202_+\|terminase	terminase large subunit	X2KQ40	Campylobacter_phage	0.0e+00	100.0
WP_002913302.1\|309256_309691_+	type II toxin-antitoxin system PemK/MazF family toxin	X2KLV2	Campylobacter_phage	2.4e-78	100.0
WP_002788272.1\|309850_311023_+\|portal	phage portal protein	X2KR48	Campylobacter_phage	3.1e-216	100.0
WP_002800770.1\|311019_311562_+	hypothetical protein	X2KRF4	Campylobacter_phage	5.7e-93	100.0
WP_002788276.1\|311562_311913_+	hypothetical protein	X2KXE7	Campylobacter_phage	7.3e-57	100.0
WP_002869971.1\|311900_312164_-	type II toxin-antitoxin system RelE/ParE family toxin	X2KQ37	Campylobacter_phage	2.9e-34	100.0
WP_002869970.1\|312160_312385_-	hypothetical protein	X2KLV0	Campylobacter_phage	5.7e-31	100.0
WP_002800772.1\|312531_313512_+	hypothetical protein	X2KXL7	Campylobacter_phage	2.3e-180	100.0
WP_002788281.1\|313508_313865_+	hypothetical protein	X2KRE9	Campylobacter_phage	1.8e-58	100.0
WP_002788282.1\|313945_314161_+	hypothetical protein	X2KXE3	Campylobacter_phage	2.2e-32	100.0
WP_002788283.1\|314152_314491_-	hypothetical protein	X2KLU6	Campylobacter_phage	1.6e-56	100.0
WP_002800774.1\|314550_320277_+	hypothetical protein	X2KLJ2	Campylobacter_phage	0.0e+00	100.0
WP_002788286.1\|320289_321159_+	hypothetical protein	X2KRE5	Campylobacter_phage	3.9e-168	100.0
WP_002788287.1\|321244_321802_+	peptidase	X2KXE1	Campylobacter_phage	1.1e-96	100.0
WP_002788288.1\|321818_322985_+\|capsid	phage major capsid protein	X2KQ31	Campylobacter_phage	2.8e-214	100.0
WP_153257467.1\|322995_323247_+	hypothetical protein	X2KLU2	Campylobacter_phage	8.1e-18	97.9
WP_002788293.1\|323243_323681_+\|head,tail	phage gp6-like head-tail connector protein	X2KR38	Campylobacter_phage	1.8e-76	100.0
WP_153257468.1\|323693_324011_+\|head,tail	head-tail adaptor protein	X2KXD7	Campylobacter_phage	2.1e-50	99.0
WP_002788297.1\|324007_324640_+	hypothetical protein	X2KRC7	Campylobacter_phage	7.9e-110	100.0
WP_153257469.1\|324632_326198_+	hypothetical protein	X2KLU0	Campylobacter_phage	2.0e-194	94.4
WP_153257470.1\|326199_326649_+	hypothetical protein	X2KQT3	Campylobacter_phage	1.3e-71	91.3
WP_057030888.1\|326661_327297_+	DUF4376 domain-containing protein	X2KRD7	Campylobacter_phage	1.6e-89	91.0
WP_002801917.1\|327293_327758_+	hypothetical protein	X2KM25	Campylobacter_phage	5.1e-74	100.0
WP_002801918.1\|327747_328119_+	DUF1353 domain-containing protein	X2KRC3	Campylobacter_phage	9.7e-68	100.0
328037:328055	attL	NA	NA	NA	NA
WP_057981351.1\|328115_329399_+	hypothetical protein	X2KLT6	Campylobacter_phage	6.3e-239	99.8
WP_153257471.1\|329447_329909_+	hypothetical protein	X2KRD2	Campylobacter_phage	3.9e-82	97.4
WP_153257472.1\|330138_330558_+	hypothetical protein	X2KX19	Campylobacter_phage	4.1e-54	98.6
WP_002913413.1\|330475_330673_+	hypothetical protein	X2KQ22	Campylobacter_phage	4.4e-27	100.0
WP_002870263.1\|330686_330968_-	hypothetical protein	X2KLT3	Campylobacter_phage	9.3e-47	100.0
WP_153257473.1\|330984_331626_-	DNA/RNA non-specific endonuclease	X2KR27	Campylobacter_phage	2.0e-116	97.7
WP_002870274.1\|331631_332294_-	peptidase S24	X2KRC9	Campylobacter_phage	4.2e-122	100.0
WP_002870336.1\|332528_333182_-	hypothetical protein	X2KXC9	Campylobacter_phage	1.2e-113	100.0
WP_002870299.1\|333386_333590_+	hypothetical protein	X2KQ19	Campylobacter_phage	4.8e-29	100.0
WP_153257474.1\|333586_333871_+	hypothetical protein	X2KRM3	Campylobacter_phage	2.9e-40	98.9
WP_153257475.1\|334301_335033_+	DNA-binding protein	X2KRC4	Campylobacter_phage	1.9e-123	96.3
WP_002787279.1\|335085_335373_+	hypothetical protein	X2KXC8	Campylobacter_phage	2.4e-50	100.0
WP_002787281.1\|335429_335693_+	hypothetical protein	X2KQ17	Campylobacter_phage	4.1e-44	100.0
WP_002787283.1\|335658_335889_+	hypothetical protein	X2KLS5	Campylobacter_phage	5.0e-38	100.0
WP_002787287.1\|336026_336794_+	hypothetical protein	X2KRC2	Campylobacter_phage	3.7e-138	100.0
WP_002787289.1\|336807_337044_+	hypothetical protein	X2KXC5	Campylobacter_phage	8.1e-36	100.0
WP_002787293.1\|337431_337752_+	hypothetical protein	X2KLS2	Campylobacter_phage	1.4e-51	100.0
WP_153257476.1\|337830_338145_+	hypothetical protein	X2KR17	Campylobacter_phage	3.5e-50	99.0
WP_153257477.1\|338081_338843_+	hypothetical protein	X2KQ45	Campylobacter_phage	1.2e-123	99.1
WP_002787300.1\|338851_339076_+	hypothetical protein	X2KM06	Campylobacter_phage	1.8e-37	100.0
WP_002858334.1\|339076_339448_+	hypothetical protein	X2KQ09	Campylobacter_phage	1.2e-60	100.0
WP_002787304.1\|339431_339698_+	hypothetical protein	X2KLR9	Campylobacter_phage	4.7e-40	100.0
WP_153257478.1\|339675_340431_+	site-specific DNA-methyltransferase	X2KR14	Campylobacter_phage	8.1e-146	99.2
WP_002787307.1\|340448_340802_+	hypothetical protein	X2KRB4	Campylobacter_phage	2.1e-56	100.0
WP_002787309.1\|340803_341010_+	helix-turn-helix domain-containing protein	X2KXB9	Campylobacter_phage	4.8e-32	100.0
WP_002787311.1\|341006_342182_-\|integrase	site-specific integrase	X2KXI6	Campylobacter_phage	1.7e-222	100.0
WP_002854333.1\|342433_343177_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_002869732.1\|343179_343956_-	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_070317316.1\|343971_346611_-	DNA polymerase I	A0A142F1Q9	Bacillus_phage	2.0e-61	29.0
354235:354253	attR	NA	NA	NA	NA

DBSCAN-SWA_2

533623 : 542116

Campylobacter_phage(90.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011049719.1\|533623_534658_+	hypothetical protein	A0A2I7SBK1	Pseudomonas_phage	1.2e-17	30.9
WP_002861675.1\|534657_535062_+	hypothetical protein	NA	NA	NA	NA
WP_002874379.1\|535042_535237_+	hypothetical protein	NA	NA	NA	NA
WP_052795871.1\|535239_537882_+	hypothetical protein	X2KLU0	Campylobacter_phage	6.8e-46	67.5
WP_014517274.1\|537883_538333_+	hypothetical protein	X2KQT3	Campylobacter_phage	8.7e-79	98.7
WP_002873428.1\|538345_538981_+	DUF4376 domain-containing protein	X2KRD7	Campylobacter_phage	6.5e-96	99.1
WP_002875081.1\|538977_539361_+	hypothetical protein	X2KXD5	Campylobacter_phage	9.1e-61	99.2
WP_002874385.1\|539353_539728_+	DUF1353 domain-containing protein	X2KPN9	Campylobacter_phage	2.3e-64	95.2
WP_070317298.1\|539724_541008_+	hypothetical protein	X2KRN1	Campylobacter_phage	2.8e-239	99.8
WP_153257471.1\|541056_541518_+	hypothetical protein	X2KRD2	Campylobacter_phage	3.9e-82	97.4
WP_153257472.1\|541581_542001_+	hypothetical protein	X2KX19	Campylobacter_phage	4.1e-54	98.6
WP_002781772.1\|541918_542116_+	hypothetical protein	X2KPN2	Campylobacter_phage	3.7e-26	96.9

DBSCAN-SWA_3

1017409 : 1099190

Campylobacter_phage(48.48%)

integrase,plate,tail,protease,tRNA,transposase,terminase

attL 1035868:1035887|attR 1110542:1110561

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002853058.1\|1017409_1017928_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_032585073.1\|1018026_1018443_+	hypothetical protein	NA	NA	NA	NA
WP_032580799.1\|1018451_1020068_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	R4TQL5	Phaeocystis_globosa_virus	2.2e-71	44.4
WP_002858158.1\|1020071_1021322_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_070317237.1\|1021318_1022890_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_052795973.1\|1022886_1023942_-	3-dehydroquinate synthase	A0A0P0C619	Ostreococcus_mediterraneus_virus	5.7e-28	35.0
WP_002857878.1\|1023987_1025388_-	potassium transporter TrkA	NA	NA	NA	NA
WP_002859190.1\|1025417_1026539_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.9e-70	38.8
WP_002860739.1\|1026540_1027308_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_079264053.1\|1027670_1028192_+	DUF4102 domain-containing protein	K7PGY1	Enterobacteria_phage	9.7e-05	31.4
WP_052796493.1\|1028242_1029181_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_020853147.1\|1029327_1029570_+	hypothetical protein	NA	NA	NA	NA
WP_052796220.1\|1030278_1030593_-	hypothetical protein	NA	NA	NA	NA
WP_052796221.1\|1031129_1031531_+	hypothetical protein	NA	NA	NA	NA
WP_087685863.1\|1031938_1032325_-	hypothetical protein	NA	NA	NA	NA
WP_052796223.1\|1032868_1033165_-	type II toxin-antitoxin system PemK/MazF family toxin	X2KLV2	Campylobacter_phage	3.8e-14	56.0
WP_002779581.1\|1035466_1035658_+	hypothetical protein	NA	NA	NA	NA
1035868:1035887	attL	NA	NA	NA	NA
WP_002835258.1\|1036482_1036875_+	hypothetical protein	NA	NA	NA	NA
WP_052796492.1\|1038122_1039118_+	DUF3825 domain-containing protein	NA	NA	NA	NA
WP_052796235.1\|1041278_1041506_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_032591365.1\|1041509_1041869_+	HicB family protein	NA	NA	NA	NA
WP_002883553.1\|1042001_1042235_+	hypothetical protein	NA	NA	NA	NA
WP_002883551.1\|1042235_1042517_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_052796228.1\|1042643_1042964_+	hypothetical protein	NA	NA	NA	NA
WP_052796217.1\|1046127_1046931_-	hypothetical protein	NA	NA	NA	NA
WP_153257492.1\|1046953_1048240_-	hypothetical protein	NA	NA	NA	NA
WP_071450866.1\|1048251_1051722_-	hypothetical protein	NA	NA	NA	NA
WP_079476960.1\|1051718_1053149_-	hypothetical protein	NA	NA	NA	NA
WP_153257493.1\|1053156_1054641_-	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_052775884.1\|1058794_1059463_-	hypothetical protein	NA	NA	NA	NA
WP_002902203.1\|1059577_1059991_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_070317249.1\|1059987_1060860_-	hypothetical protein	NA	NA	NA	NA
WP_153257494.1\|1062649_1063699_+	DNA (cytosine-5-)-methyltransferase	A0A0R6PG08	Moraxella_phage	1.2e-102	51.8
WP_153257495.1\|1063688_1065626_+	hypothetical protein	NA	NA	NA	NA
WP_002865000.1\|1065981_1066302_+	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
WP_002843339.1\|1066311_1066506_+	hypothetical protein	A7YG72	Campylobacter_phage	1.8e-28	100.0
WP_002865289.1\|1066585_1066873_+	hypothetical protein	A7YGG4	Campylobacter_phage	1.9e-47	100.0
WP_002870153.1\|1066900_1067716_-	DNA adenine methylase	A7YGG5	Campylobacter_phage	1.4e-151	100.0
WP_002865380.1\|1067917_1068406_-	virion morphogenesis protein	A7YGE7	Campylobacter_phage	2.0e-89	100.0
WP_153257496.1\|1068409_1070626_-\|tail	phage tail tape measure protein	A7YGE8	Campylobacter_phage	0.0e+00	99.7
WP_002865378.1\|1070667_1070973_+	hypothetical protein	A7YGX3	Campylobacter_phage	2.7e-39	100.0
WP_002873740.1\|1071084_1071324_-\|tail	phage tail assembly protein	A7YGZ3	Campylobacter_phage	9.4e-24	93.8
WP_002913647.1\|1071476_1071986_-\|tail	tail protein	A7YGF3	Campylobacter_phage	2.5e-90	100.0
WP_039332501.1\|1072012_1073206_-\|tail	phage tail sheath family protein	A7YGF4	Campylobacter_phage	5.0e-198	100.0
WP_153257497.1\|1073224_1074232_-	hypothetical protein	A7YGZ7	Campylobacter_phage	1.1e-190	99.4
WP_019108980.1\|1074356_1074728_-	DUF1353 domain-containing protein	A7YGH7	Campylobacter_phage	5.7e-68	99.2
WP_019108981.1\|1074724_1075231_-	DUF4376 domain-containing protein	A7YG80	Campylobacter_phage	5.7e-87	99.4
WP_153257498.1\|1075255_1076287_-\|tail	phage tail protein	A7YGF9	Campylobacter_phage	2.0e-187	98.8
WP_052805456.1\|1076418_1077039_-\|tail	phage tail protein I	A7YH02	Campylobacter_phage	3.6e-59	96.6
WP_002872716.1\|1077160_1078327_-\|plate	baseplate assembly protein	A0A1X9SH02	Bradyrhizobium_phage	2.6e-13	25.8
WP_002795239.1\|1078323_1078614_-\|plate	baseplate assembly protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_002795238.1\|1078610_1078802_-	hypothetical protein	NA	NA	NA	NA
WP_052805458.1\|1078810_1079443_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	6.0e-09	35.6
WP_002784492.1\|1079442_1079757_-	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|1079868_1080117_-	hypothetical protein	NA	NA	NA	NA
WP_002784498.1\|1080113_1080455_-	hypothetical protein	NA	NA	NA	NA
WP_052775402.1\|1080465_1080855_-	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	3.2e-21	46.3
WP_002784501.1\|1081002_1081437_+	hypothetical protein	NA	NA	NA	NA
WP_002901531.1\|1081438_1082254_+	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
WP_041160236.1\|1082256_1082784_+	hypothetical protein	NA	NA	NA	NA
WP_041160237.1\|1082786_1083764_+	hypothetical protein	R9TRN2	Rhizobium_phage	3.3e-06	23.4
WP_038401722.1\|1083879_1084338_+	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_002803360.1\|1084330_1084930_+	DUF1804 family protein	NA	NA	NA	NA
WP_002901530.1\|1084929_1086600_+\|terminase	phage terminase large subunit	H1ZZE1	Pseudomonas_virus	2.6e-91	41.2
WP_153257499.1\|1086609_1087980_+	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	7.6e-17	26.3
WP_153257500.1\|1087982_1089218_+	hypothetical protein	Q6QIB9	Burkholderia_phage	1.2e-29	34.7
WP_002784519.1\|1089343_1089718_+\|tail	tail protein	NA	NA	NA	NA
WP_153257501.1\|1089710_1089902_+\|tail	phage tail protein	NA	NA	NA	NA
WP_002852060.1\|1089895_1090873_+\|tail	tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_002784523.1\|1090869_1091154_-	DNA-binding protein	NA	NA	NA	NA
WP_153257502.1\|1091247_1091922_+	deoxyribonuclease	NA	NA	NA	NA
WP_153257503.1\|1091934_1092207_-	hypothetical protein	NA	NA	NA	NA
WP_039332546.1\|1092253_1092703_-	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_153257504.1\|1092699_1093392_-	hypothetical protein	NA	NA	NA	NA
WP_002784531.1\|1093391_1093661_-	hypothetical protein	NA	NA	NA	NA
WP_153257505.1\|1093657_1094620_-	hypothetical protein	NA	NA	NA	NA
WP_002872701.1\|1094678_1095164_-	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	6.4e-19	33.3
WP_153257506.1\|1095270_1095612_-	hypothetical protein	NA	NA	NA	NA
WP_002824157.1\|1095744_1095930_-	hypothetical protein	NA	NA	NA	NA
WP_002791422.1\|1095926_1096118_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_002806833.1\|1096120_1097044_-	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	3.9e-09	24.5
WP_039332557.1\|1097114_1099190_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
1110542:1110561	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1529372 : 1537836

Synechococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002903944.1\|1529372_1530095_-	capsular polysaccharide biosynthesis protein	E3SJ89	Synechococcus_phage	2.9e-15	26.7
WP_002903942.1\|1530091_1531615_-	hypothetical protein	B2ZYD9	Ralstonia_phage	5.3e-35	27.5
WP_014516848.1\|1531611_1532010_-	capsule biosynthesis phosphatase	A0A2K9L0P7	Tupanvirus	1.7e-09	41.0
WP_002903935.1\|1532049_1533969_-	hypothetical protein	E3SJ94	Synechococcus_phage	2.9e-06	27.8
WP_002903931.1\|1533962_1535822_-	methyltransferase domain-containing protein	M4QRS6	Synechococcus_phage	3.0e-56	40.2
WP_002826454.1\|1535818_1536148_-	hypothetical protein	NA	NA	NA	NA
WP_014516850.1\|1536150_1536486_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_002903928.1\|1536478_1537204_-	NTP transferase domain-containing protein	A0A1D8KNV9	Synechococcus_phage	9.2e-30	33.6
WP_057981435.1\|1537197_1537836_-	HAD family phosphatase	M1I080	Acanthocystis_turfacea_Chlorella_virus	6.4e-35	42.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045046

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP045048

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection