CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP041339	Escherichia coli strain CCUG 73778 plasmid pSUH-2, complete sequence	0 crisprs	NA	0	1
NZ_CP041338	Escherichia coli strain CCUG 73778 plasmid pSUH-1, complete sequence	0 crisprs	NA	0	9
NZ_CP041340	Escherichia coli strain CCUG 73778 plasmid pSUH-3, complete sequence	0 crisprs	NA	0	0
NZ_CP041341	Escherichia coli strain CCUG 73778 plasmid pSUH-4, complete sequence	0 crisprs	NA	0	0
NZ_CP041343	Escherichia coli strain CCUG 73778 plasmid pSUH-6, complete sequence	0 crisprs	NA	0	0
NZ_CP041337	Escherichia coli strain CCUG 73778 chromosome, complete genome	3 crisprs	DEDDh,c2c9_V-U4,DinG,cas3,RT,csa3	2	11
NZ_CP041342	Escherichia coli strain CCUG 73778 plasmid pSUH-5, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 7782

Macacine_betaherpesvirus(100.0%)

integrase

attL 2248:2261|attR 15015:15028

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001348615.1\|952_1855_-	DUF1281 domain-containing protein	NA	NA	NA	NA
2248:2261	attL	NA	NA	NA	NA
WP_000817036.1\|2721_3693_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-174	99.4
WP_000772446.1\|3692_4859_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	7.0e-229	100.0
WP_000852146.1\|5446_6202_-	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	3.8e-143	100.0
WP_000016982.1\|6975_7782_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.8e-57	100.0
15015:15028	attR	NA	NA	NA	NA

DBSCAN-SWA_2

20648 : 76362

Escherichia_phage(45.0%)

transposase,integrase

attL 63705:63764|attR 76366:77186

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001553854.1\|20648_23765_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	3.7e-27	24.0
WP_001553855.1\|23886_25170_-	restriction endonuclease subunit S	F2Y1N5	Organic_Lake_phycodnavirus	2.9e-10	26.5
WP_001553856.1\|25166_26723_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	7.1e-104	42.5
WP_001190712.1\|26905_27127_+	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_001216034.1\|27126_27507_+	type II toxin-antitoxin system death-on-curing family toxin	A0A077SK56	Escherichia_phage	1.1e-63	100.0
WP_001513661.1\|27511_27691_+	hypothetical protein	Q71TH5	Escherichia_phage	3.5e-23	96.6
WP_001513660.1\|27718_28078_+	hypothetical protein	A0A077SLM1	Escherichia_phage	5.0e-45	98.9
WP_001513659.1\|28364_28682_-	hypothetical protein	NA	NA	NA	NA
WP_012372828.1\|28909_29926_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.9e-186	99.4
WP_001373486.1\|30133_31537_+	S-methylmethionine permease	NA	NA	NA	NA
WP_000081352.1\|31523_32456_+	homocysteine S-methyltransferase	NA	NA	NA	NA
WP_000361612.1\|35609_36587_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	3.9e-100	59.2
WP_001066942.1\|36871_37612_-	site-specific recombinase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_032156742.1\|37732_37858_-	hypothetical protein	NA	NA	NA	NA
WP_001072355.1\|39057_40227_+	hypothetical protein	NA	NA	NA	NA
WP_001105060.1\|40422_40716_-	hypothetical protein	NA	NA	NA	NA
WP_000421272.1\|40821_41097_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001387467.1\|41096_41381_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_000562172.1\|41985_42738_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_001022265.1\|42783_43749_-	2-keto-3-deoxygluconate transporter	NA	NA	NA	NA
WP_000710783.1\|43781_44162_-	reactive intermediate/imine deaminase	NA	NA	NA	NA
WP_001077068.1\|44186_45077_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_001403365.1\|46060_46927_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_001271561.1\|46916_47804_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_000922702.1\|47814_48639_+	phosphodiesterase	NA	NA	NA	NA
WP_000950177.1\|48644_49718_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-28	33.7
WP_000476108.1\|49710_51021_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001067855.1\|52940_53645_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000874189.1\|54354_54840_-	hypothetical protein	NA	NA	NA	NA
WP_001267177.1\|54864_55350_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_000117262.1\|55336_56032_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.5e-29	38.9
WP_000729220.1\|56036_57167_-	ABC transporter permease	NA	NA	NA	NA
WP_000964653.1\|57156_58440_-	ABC transporter permease	NA	NA	NA	NA
WP_000119836.1\|58442_59822_-	DUF2318 domain-containing protein	NA	NA	NA	NA
WP_000178050.1\|59925_60453_-	iron transporter	NA	NA	NA	NA
WP_000118029.1\|60493_62380_-	FTR1 family iron permease	NA	NA	NA	NA
WP_012372823.1\|62726_63542_-	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
63705:63764	attL	NA	NA	NA	NA
WP_001067834.1\|63767_64472_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
WP_000219391.1\|64593_65499_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000004159.1\|65495_66734_+	MFS transporter	NA	NA	NA	NA
WP_001137892.1\|66733_67318_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|67810_68575_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000130000.1\|68801_69107_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000184001.1\|69117_70323_-	chromate efflux transporter	NA	NA	NA	NA
WP_000376616.1\|70478_70682_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|70809_71649_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|71642_71990_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000503573.1\|72195_72984_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_001389366.1\|73114_73588_-	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_000845048.1\|73745_74759_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000454193.1\|74961_75312_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001553864.1\|75437_75767_+	transposon Tn21 resolvase	M9Q1K0	Clostridium_phage	6.9e-09	55.6
WP_001067834.1\|75657_76362_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
76366:77186	attR	NA	NA	NA	NA

DBSCAN-SWA_3

79726 : 84496

Enterobacteria_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000027057.1\|79726_80587_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|80769_81327_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_001143760.1\|81490_84496_+\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	100.0

DBSCAN-SWA_4

93291 : 94001

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059330006.1\|93291_93654_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	9.0e-34	88.5
WP_000624725.1\|93650_94001_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4

DBSCAN-SWA_5

105101 : 105848

Xanthomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000205701.1\|105101_105848_-	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	9.3e-09	30.0

DBSCAN-SWA_6

129480 : 129702

Vibrio_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278692.1\|129480_129702_-	conjugal transfer protein TraR	A2I309	Vibrio_virus	4.4e-07	39.4

DBSCAN-SWA_7

137753 : 138575

Yersinia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001234465.1\|137753_138575_-	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	1.7e-43	37.8

DBSCAN-SWA_8

144799 : 146230

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000813680.1\|144799_146230_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	1.2e-28	24.5

DBSCAN-SWA_9

149791 : 155535

Enterobacteria_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_153435661.1\|149791_150802_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	1.4e-15	26.8
WP_087523611.1\|151763_153036_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.8e-174	98.0
WP_089634947.1\|153021_153591_+	hypothetical protein	NA	NA	NA	NA
WP_047605447.1\|154691_154946_-	hypothetical protein	NA	NA	NA	NA
WP_001348621.1\|154971_155535_-	class I SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	1.0e-20	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041337

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041337_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041337_1

1099250-1099373

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041337_1

>merge|NZ_CP041337|1|1099250-1099373|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP041337|1|1|1099250-1099373|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041337.1\|WP_000504336.1\|1094089_1094737_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP041337.1\|WP_000102278.1\|1108269_1108359_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP041337.1\|WP_001174939.1\|1100984_1102358_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP041337.1\|WP_001182336.1\|1104692_1105904_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP041337.1\|WP_001070248.1\|1091336_1091963_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP041337.1\|WP_000528342.1\|1090671_1090881_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP041337.1\|WP_000848170.1\|1097078_1098683_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP041337.1\|WP_001070015.1\|1095465_1096251_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP041337.1\|WP_001273524.1\|1091983_1094086_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP041337.1\|WP_000701057.1\|1108524_1109694_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP041337.1\|WP_000212681.1\|1098808_1099114_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP041337.1\|WP_000534260.1\|1099687_1100944_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP041337.1\|WP_000493947.1\|1102572_1103214_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP041337.1\|WP_000007273.1\|1109839_1110421_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP041337.1\|WP_000587585.1\|1096254_1097067_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP041337.1\|WP_000269498.1\|1106016_1106949_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP041337.1\|WP_001296101.1\|1094800_1095469_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP041337.1\|WP_001295403.1\|1088702_1090115_-\|pyruvate-kinase-I	unknown	unknown	gnl\|CDD\|181699
NZ_CP041337.1\|WP_000190985.1\|1106945_1107971_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP041337.1\|WP_000098896.1\|1103253_1104402_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282

Protein	Function_ID	Function_description	E-value
NZ_CP041337.1\|WP_000504336.1\|1094089_1094737_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	8.66973e-123
NZ_CP041337.1\|WP_000701057.1\|1108524_1109694_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.86098e-98
NZ_CP041337.1\|WP_001174939.1\|1100984_1102358_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP041337.1\|WP_001182336.1\|1104692_1105904_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP041337.1\|WP_001070248.1\|1091336_1091963_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	4.70639e-138
NZ_CP041337.1\|WP_000528342.1\|1090671_1090881_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP041337.1\|WP_000848170.1\|1097078_1098683_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP041337.1\|WP_001070015.1\|1095465_1096251_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	4.53331e-162
NZ_CP041337.1\|WP_001273524.1\|1091983_1094086_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP041337.1\|WP_000212681.1\|1098808_1099114_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	7.08279e-64
NZ_CP041337.1\|WP_000534260.1\|1099687_1100944_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP041337.1\|WP_000493947.1\|1102572_1103214_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP041337.1\|WP_000007273.1\|1109839_1110421_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	1.68395e-137
NZ_CP041337.1\|WP_000587585.1\|1096254_1097067_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	2.89827e-172
NZ_CP041337.1\|WP_000269498.1\|1106016_1106949_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP041337.1\|WP_001296101.1\|1094800_1095469_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.44535e-77
NZ_CP041337.1\|WP_001295403.1\|1088702_1090115_-\|pyruvate-kinase-I	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP041337.1\|WP_000190985.1\|1106945_1107971_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP041337.1\|WP_000098896.1\|1103253_1104402_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0

>NZ_CP041337.1|WP_000212681.1|1098808_1099114_-|monooxygenase
MATLLQLHFSFNGPFGDTMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNVPLSQINQAKLA
>NZ_CP041337.1|WP_000848170.1|1097078_1098683_-|FAD-NAD(P)-binding-protein
MKTIAIVGAGPTGIYTLFSLLQQQTPLSISIFDQADEAGIGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNLNLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVTFHRDNANEKLNITLMSRTGILPEADFYCPIPYEPLHIITDQALNAEIQKGEVGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEENLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPNVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGITACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP041337.1|WP_000587585.1|1096254_1097067_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERLFCSQFVRSDDHARLGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGARARVAVTGNSSRISSAGDSGRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGCAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP041337.1|WP_001070015.1|1095465_1096251_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHSERIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLDRAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP041337.1|WP_001296101.1|1094800_1095469_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVIDNDNGTQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGVCPYQVRYLNPVTKVADKCDFCAETRLAKGFPPICVSACPEHALIFGHEDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP041337.1|WP_000504336.1|1094089_1094737_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHQDELPLAKVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP041337.1|WP_001273524.1|1091983_1094086_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP041337.1|WP_001070248.1|1091336_1091963_+|ferredoxin-like-protein
MNPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKESQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP041337.1|WP_000528342.1|1090671_1090881_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP041337.1|WP_001295403.1|1088702_1090115_-|pyruvate-kinase-I
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP041337.1|WP_000534260.1|1099687_1100944_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEACNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFGIGNINLNGGKLWLITDAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP041337.1|WP_001174939.1|1100984_1102358_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP041337.1|WP_000493947.1|1102572_1103214_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP041337.1|WP_000098896.1|1103253_1104402_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP041337.1|WP_001182336.1|1104692_1105904_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLFIGLTIFALGSLGMLWVENAATLLILRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP041337.1|WP_000269498.1|1106016_1106949_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALKLENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP041337.1|WP_000190985.1|1106945_1107971_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP041337.1|WP_000102278.1|1108269_1108359_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP041337.1|WP_000701057.1|1108524_1109694_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFLSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHVTPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAIVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>NZ_CP041337.1|WP_000007273.1|1109839_1110421_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKPLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP041337_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041337_2

1775985-1776076

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041337_2

>merge|NZ_CP041337|2|1775985-1776076|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTTTTGAAATTACCTCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP041337|2|2|1775985-1776076|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTTTTGAAATTACCTCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041337.1\|WP_001295944.1\|1772616_1773417_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP041337.1\|WP_000209903.1\|1780637_1781237_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP041337.1\|WP_001264949.1\|1785746_1786775_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801
NZ_CP041337.1\|WP_000191701.1\|1769501_1770140_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP041337.1\|WP_001151437.1\|1776499_1777096_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP041337.1\|WP_001295943.1\|1774542_1775871_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP041337.1\|WP_001120112.1\|1785081_1785774_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP041337.1\|WP_001126780.1\|1772222_1772609_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP041337.1\|WP_001295946.1\|1770427_1771519_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP041337.1\|WP_001028098.1\|1774027_1774522_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP041337.1\|WP_000979522.1\|1765235_1765445_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041337.1\|WP_001001161.1\|1773426_1774017_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP041337.1\|WP_001044302.1\|1777381_1778623_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP041337.1\|WP_001143120.1\|1777116_1777344_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP041337.1\|WP_012896765.1\|1771518_1772211_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP041337.1\|WP_001063148.1\|1781233_1783780_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP041337.1\|WP_000024569.1\|1780077_1780383_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP041337.1\|WP_001230247.1\|1783779_1784952_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP041337.1\|WP_001295947.1\|1765499_1769462_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP041337.1\|WP_000420625.1\|1779157_1780078_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347

Protein	Function_ID	Function_description	E-value
NZ_CP041337.1\|WP_001295944.1\|1772616_1773417_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	2.24575e-139
NZ_CP041337.1\|WP_000209903.1\|1780637_1781237_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	6.77311e-84
NZ_CP041337.1\|WP_001264949.1\|1785746_1786775_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	6.52362e-177
NZ_CP041337.1\|WP_000191701.1\|1769501_1770140_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP041337.1\|WP_001151437.1\|1776499_1777096_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP041337.1\|WP_001295943.1\|1774542_1775871_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP041337.1\|WP_001120112.1\|1785081_1785774_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP041337.1\|WP_001126780.1\|1772222_1772609_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP041337.1\|WP_001295946.1\|1770427_1771519_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP041337.1\|WP_001028098.1\|1774027_1774522_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	8.8278e-106
NZ_CP041337.1\|WP_001143120.1\|1777116_1777344_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP041337.1\|WP_001001161.1\|1773426_1774017_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	6.42763e-128
NZ_CP041337.1\|WP_001044302.1\|1777381_1778623_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP041337.1\|WP_001230247.1\|1783779_1784952_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP041337.1\|WP_012896765.1\|1771518_1772211_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	6.11512e-169
NZ_CP041337.1\|WP_001063148.1\|1781233_1783780_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP041337.1\|WP_000024569.1\|1780077_1780383_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	7.6018e-65
NZ_CP041337.1\|WP_001295947.1\|1765499_1769462_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP041337.1\|WP_000420625.1\|1779157_1780078_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0

>NZ_CP041337.1|WP_001295943.1|1774542_1775871_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKNVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGITTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNSVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQKP
>NZ_CP041337.1|WP_001028098.1|1774027_1774522_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEKALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP041337.1|WP_001001161.1|1773426_1774017_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWREPPVSDETLREIYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSDLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP041337.1|WP_001295944.1|1772616_1773417_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLDQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINTHTRRCFQVREQLLHSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP041337.1|WP_001126780.1|1772222_1772609_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP041337.1|WP_012896765.1|1771518_1772211_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSSTSFARIA
>NZ_CP041337.1|WP_001295946.1|1770427_1771519_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGSGKSDFKGDFFTMDDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVANVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP041337.1|WP_000191701.1|1769501_1770140_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP041337.1|WP_001295947.1|1765499_1769462_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQSLPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRQVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDNALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP041337.1|WP_000979522.1|1765235_1765445_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLINEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP041337.1|WP_001151437.1|1776499_1777096_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP041337.1|WP_001143120.1|1777116_1777344_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP041337.1|WP_001044302.1|1777381_1778623_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYKLLEQIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTERTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDRVLNEAVK
>NZ_CP041337.1|WP_000420625.1|1779157_1780078_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGTKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP041337.1|WP_000024569.1|1780077_1780383_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPSEIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP041337.1|WP_000209903.1|1780637_1781237_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNGLENSIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLDLLSHLHFSLGEGTVPARRIDGLRQKTLTALREWLPEFAARCRQYDSFGFYAALSQLLLVLVECDYQKR
>NZ_CP041337.1|WP_001063148.1|1781233_1783780_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVSTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFISPQDASARGIRHGDVVRVFNVRGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP041337.1|WP_001230247.1|1783779_1784952_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVATGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP041337.1|WP_001120112.1|1785081_1785774_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP041337.1|WP_001264949.1|1785746_1786775_-|TMAO-reductase-system-periplasmic-protein-TorT
MRVLLFLLLSLFMLSAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVANLPVIELVNAIDAPHVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVMTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK

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Crispr_ID: NZ_CP041337_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041337_3

2009725-2009807

Orphan

I-F

Consensus_repeat	Method
ATCTGCCTGTACGGCAGTGAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041337_3

>merge|NZ_CP041337|3|2009725-2009807|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACTTGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTAAGCTGCCTGTACGGCAGTGAACT

>NZ_CP041337|3|3|2009725-2009807|CRISPRCasFinder
ATCTGCCTGTACGGCAGTGAACT	TGTCATTATTGGCAGACAGGATCCGCGGCAATTTCTA
AGCTGCCTGTACGGCAGTGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041337.1\|WP_000228473.1\|2002470_2002965_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP041337.1\|WP_001040187.1\|2009115_2009334_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP041337.1\|WP_000077041.1\|1998229_2002336_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP041337.1\|WP_000599803.1\|2017427_2019086_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP041337.1\|WP_001351020.1\|2016474_2017431_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP041337.1\|WP_000410785.1\|2012968_2013193_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP041337.1\|WP_001202204.1\|2006363_2008085_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP041337.1\|WP_000188152.1\|2013265_2015212_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP041337.1\|WP_001043561.1\|2004596_2006363_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP041337.1\|WP_001241674.1\|2008126_2008831_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP041337.1\|WP_001385255.1\|2003508_2004474_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP041337.1\|WP_001295343.1\|1997459_1998071_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP041337.1\|WP_000488716.1\|2019510_2020206_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP041337.1\|WP_000934041.1\|2010018_2012295_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP041337.1\|WP_000886683.1\|1994722_1996015_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP041337.1\|WP_000746478.1\|2015208_2016324_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP041337.1\|WP_000520781.1\|2012325_2012646_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP041337.1\|WP_000067797.1\|1996105_1997449_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP041337.1\|WP_000458841.1\|2021663_2023316_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP041337.1\|WP_000491137.1\|2020620_2021520_+\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287

Protein	Function_ID	Function_description	E-value
NZ_CP041337.1\|WP_000228473.1\|2002470_2002965_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP041337.1\|WP_001040187.1\|2009115_2009334_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP041337.1\|WP_000077041.1\|1998229_2002336_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP041337.1\|WP_000599803.1\|2017427_2019086_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP041337.1\|WP_001351020.1\|2016474_2017431_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.43529e-131
NZ_CP041337.1\|WP_000410785.1\|2012968_2013193_+\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP041337.1\|WP_001202204.1\|2006363_2008085_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP041337.1\|WP_000188152.1\|2013265_2015212_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP041337.1\|WP_001043561.1\|2004596_2006363_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP041337.1\|WP_001241674.1\|2008126_2008831_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.92039e-139
NZ_CP041337.1\|WP_001385255.1\|2003508_2004474_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP041337.1\|WP_001295343.1\|1997459_1998071_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP041337.1\|WP_000488716.1\|2019510_2020206_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
NZ_CP041337.1\|WP_000934041.1\|2010018_2012295_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP041337.1\|WP_000886683.1\|1994722_1996015_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP041337.1\|WP_000746478.1\|2015208_2016324_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP041337.1\|WP_000520781.1\|2012325_2012646_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP041337.1\|WP_000067797.1\|1996105_1997449_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP041337.1\|WP_000458841.1\|2021663_2023316_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP041337.1\|WP_000491137.1\|2020620_2021520_+\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.40497e-117

>NZ_CP041337.1|WP_001040187.1|2009115_2009334_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP041337.1|WP_001241674.1|2008126_2008831_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLSNNFWVPRCLFSPQE
>NZ_CP041337.1|WP_001202204.1|2006363_2008085_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPKVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP041337.1|WP_001043561.1|2004596_2006363_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP041337.1|WP_001385255.1|2003508_2004474_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNTDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP041337.1|WP_000228473.1|2002470_2002965_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP041337.1|WP_000077041.1|1998229_2002336_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQSTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAAEQPAQQPYYAPAPEQAVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVTQQPQYQQPQQPVVPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP041337.1|WP_001295343.1|1997459_1998071_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP041337.1|WP_000067797.1|1996105_1997449_-|replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAVGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP041337.1|WP_000886683.1|1994722_1996015_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NZ_CP041337.1|WP_000934041.1|2010018_2012295_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP041337.1|WP_000520781.1|2012325_2012646_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP041337.1|WP_000410785.1|2012968_2013193_+|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP041337.1|WP_000188152.1|2013265_2015212_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLEWKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP041337.1|WP_000746478.1|2015208_2016324_-|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP041337.1|WP_001351020.1|2016474_2017431_+|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>NZ_CP041337.1|WP_000599803.1|2017427_2019086_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENIPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP041337.1|WP_000488716.1|2019510_2020206_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP041337.1|WP_000491137.1|2020620_2021520_+|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSTTVILLCNIAALMWLERGLPWSNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP041337.1|WP_000458841.1|2021663_2023316_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIIGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041337_1	1.1\|1099293\|38\|NZ_CP041337\|CRISPRCasFinder	1099293-1099330	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP041337_2	2.1\|1776011\|40\|NZ_CP041337\|CRISPRCasFinder	1776011-1776050	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	2	0.95

1. spacer 1.1|1099293|38|NZ_CP041337|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

2. spacer 2.1|1776011|40|NZ_CP041337|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 2, identity: 0.95

gcgctgcgggtcatttttgaaattacctccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.***********.************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

400430 : 459344

Enterobacteria_phage(52.08%)

capsid,lysis,protease,terminase,head,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000849214.1\|400430_400919_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_000686738.1\|401326_401821_+	ferredoxin-type protein NapF	NA	NA	NA	NA
WP_000557384.1\|401810_402074_+	chaperone NapD	NA	NA	NA	NA
WP_000778067.1\|402070_404557_+	periplasmic nitrate reductase subunit alpha	NA	NA	NA	NA
WP_000091291.1\|404563_405259_+	ferredoxin-type protein NapG	NA	NA	NA	NA
WP_000013499.1\|405245_406109_+	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA
WP_000835174.1\|406105_406555_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_000528376.1\|406564_407167_+	cytochrome c-type protein NapC	NA	NA	NA	NA
WP_000888560.1\|407185_407803_+	cytochrome c biogenesis heme-transporting ATPase CcmA	G3M9Y6	Bacillus_virus	1.9e-12	25.5
WP_000971730.1\|407799_408462_+	heme exporter protein CcmB	NA	NA	NA	NA
WP_001296242.1\|408503_409241_+	heme exporter protein CcmC	NA	NA	NA	NA
WP_000186540.1\|409237_409447_+	heme exporter protein CcmD	NA	NA	NA	NA
WP_001026418.1\|409443_409923_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_000982445.1\|409919_411863_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_000824439.1\|411859_412417_+	thiol:disulfide interchange protein DsbE	NA	NA	NA	NA
WP_001211575.1\|412413_413466_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_001113641.1\|413500_414148_-	nitrate/nitrite response regulator protein NarP	NA	NA	NA	NA
WP_001136067.1\|416005_416773_+	hypothetical protein	NA	NA	NA	NA
WP_001145023.1\|416762_417146_+	hypothetical protein	NA	NA	NA	NA
WP_000183538.1\|417629_418586_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_000741304.1\|418723_419902_-	recombinase	A0A2D1GN00	Marinobacter_phage	2.7e-31	30.6
WP_001096409.1\|419904_420114_-	hypothetical protein	NA	NA	NA	NA
WP_021548839.1\|420175_420391_-	hypothetical protein	K7PLX1	Enterobacteria_phage	3.7e-27	92.1
WP_001242718.1\|420387_420750_-	phage protein	K7PH61	Enterobacteria_phage	3.6e-67	99.2
WP_021548838.1\|420740_421277_-	5'-deoxynucleotidase	A0A0P0ZCH9	Stx2-converting_phage	5.3e-99	98.3
WP_000081280.1\|421404_422229_-	DUF2303 family protein	U5P439	Shigella_phage	6.0e-150	99.6
WP_000135680.1\|422293_422656_-	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_000141752.1\|423093_423339_+	hypothetical protein	NA	NA	NA	NA
WP_000450737.1\|423927_424554_-	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	1.9e-47	48.8
WP_000205494.1\|424651_424852_+	cell division protein	NA	NA	NA	NA
WP_000515869.1\|424889_425447_+	protein YmfL	U5P4K1	Shigella_phage	8.8e-97	96.8
WP_001250272.1\|425622_425802_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_063611918.1\|425791_426733_+	helix-turn-helix domain-containing protein	S5FM81	Shigella_phage	1.8e-142	99.0
WP_074171257.1\|426729_427224_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	5.6e-87	99.4
WP_001305610.1\|427223_427877_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	3.3e-127	99.1
WP_000210154.1\|427873_428200_+	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	2.7e-53	99.1
WP_000767115.1\|428196_428586_+	RusA family crossover junction endodeoxyribonuclease	K7PH72	Enterobacteria_phage	3.5e-68	99.2
WP_001061404.1\|428605_429403_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	5.2e-151	100.0
WP_001360050.1\|429410_430400_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.5e-195	100.0
WP_001047106.1\|430413_431166_+	antitermination protein	Q8SBE4	Shigella_phage	1.1e-137	99.6
WP_000917724.1\|431418_431622_+	hypothetical protein	A0A291AWX6	Escherichia_phage	6.1e-32	100.0
WP_000799656.1\|431772_432825_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	2.7e-208	100.0
WP_000839596.1\|432892_433108_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_000193265.1\|433112_433463_+	YdfR family protein	K7PGU6	Enterobacteria_phage	9.3e-36	94.0
WP_000992100.1\|433526_434060_+	lysozyme	Q08J98	Stx2-converting_phage	3.6e-100	94.4
WP_001377819.1\|434056_434524_+\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	1.6e-75	97.4
WP_001139679.1\|434511_434664_+	hypothetical protein	K7PKL2	Enterobacteria_phage	8.9e-20	96.0
WP_000240372.1\|435407_435812_+	hypothetical protein	NA	NA	NA	NA
WP_000453600.1\|436211_436757_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.1e-94	98.9
WP_001027268.1\|436731_438657_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
WP_000198149.1\|438653_438860_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001355837.1\|438856_440458_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	2.7e-308	98.5
WP_000123309.1\|440438_441758_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	7.4e-235	99.1
WP_001338090.1\|441767_442100_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	6.5e-55	99.1
WP_021514934.1\|442155_443181_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.4e-187	97.1
WP_021514935.1\|443222_443618_+	hypothetical protein	A0A2R9YJP4	Escherichia_phage	3.5e-55	91.7
WP_000752960.1\|443629_443983_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	7.6e-62	99.1
WP_064673877.1\|443994_444573_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	4.3e-78	97.4
WP_000683138.1\|444569_444965_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	5.0e-70	99.2
WP_061360918.1\|444972_445713_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	8.0e-130	98.0
WP_000479193.1\|445728_446151_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-60	85.7
WP_000459457.1\|446132_446567_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_153435615.1\|446559_449121_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	96.8
WP_000847379.1\|449117_449447_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
WP_001152632.1\|449446_450145_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	9.5e-133	99.1
WP_074171255.1\|450150_450894_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	7.0e-150	98.0
WP_000090917.1\|450830_451463_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	5.9e-97	100.0
WP_064673847.1\|451523_455006_+	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	89.5
WP_001619152.1\|455072_455672_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	2.8e-109	98.5
WP_074171254.1\|455736_458760_+\|tail	phage tail protein	U5N099	Enterobacteria_phage	2.1e-67	81.4
WP_063611903.1\|458759_459344_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.4e-105	96.4

DBSCAN-SWA_2

530137 : 539582

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569347.1\|530137_531064_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.3e-23	30.8
WP_000783109.1\|531068_531800_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|531780_531888_-	protein YohO	NA	NA	NA	NA
WP_001240408.1\|531947_532679_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
WP_001295431.1\|532900_534586_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|534582_535302_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|535348_535819_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001296231.1\|535859_536321_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001296230.1\|536445_538449_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001292786.1\|538445_539582_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	6.1e-161	96.7

DBSCAN-SWA_3

633758 : 640061

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001116066.1\|633758_635153_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	6.3e-19	33.0
WP_000183040.1\|635327_636221_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	3.0e-46	42.0
WP_000699407.1\|636593_637679_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.8e-101	53.9
WP_001023641.1\|637678_638578_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.7e-28	34.8
WP_000857525.1\|638635_639514_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.6e-107	64.5
WP_001100793.1\|639518_640061_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-50	61.8

DBSCAN-SWA_4

663208 : 716364

Stx2-converting_phage(18.75%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001531805.1\|663208_663667_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	1.2e-11	31.5
WP_000980556.1\|663777_665205_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_001296209.1\|665413_666580_+	serine-type D-Ala-D-Ala carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	5.9e-228	99.5
WP_001105368.1\|666698_667172_+	DNA gyrase inhibitor SbmC	NA	NA	NA	NA
WP_001200889.1\|667369_668428_+	FUSC family protein	NA	NA	NA	NA
WP_000450409.1\|668599_668929_+	DUF496 family protein	NA	NA	NA	NA
WP_001296208.1\|669029_669212_-	hypothetical protein	NA	NA	NA	NA
WP_001161660.1\|669700_669814_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_000988600.1\|669826_670021_-	hypothetical protein	NA	NA	NA	NA
WP_000854815.1\|670017_670392_-	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA
WP_001280918.1\|670480_670849_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000086752.1\|670864_671509_-	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	1.8e-24	32.9
WP_000692345.1\|671527_671749_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_001186200.1\|671811_672288_-	RadC family protein	NA	NA	NA	NA
WP_001542276.1\|672303_672777_-	antirestriction protein	A0A2D0W9W4	Bordetella_phage	4.3e-12	33.1
WP_001164966.1\|672870_673116_-	hypothetical protein	NA	NA	NA	NA
WP_001542275.1\|673115_673934_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	8.8e-45	38.6
WP_000846703.1\|674154_674565_-	hypothetical protein	NA	NA	NA	NA
WP_001016257.1\|675013_675760_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001298859.1\|675774_677316_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001542273.1\|677430_677844_-	hypothetical protein	NA	NA	NA	NA
WP_000102633.1\|677979_679050_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_000203551.1\|679046_679952_-	chemotaxis protein	NA	NA	NA	NA
WP_001531797.1\|679948_682333_-	hypothetical protein	NA	NA	NA	NA
WP_001069649.1\|682550_682985_-	hypothetical protein	NA	NA	NA	NA
WP_000856948.1\|683413_685579_+	TonB-dependent receptor	NA	NA	NA	NA
WP_000778018.1\|685589_686579_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000217077.1\|686597_687656_+	iron ABC transporter permease	NA	NA	NA	NA
WP_000016207.1\|687652_688420_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.5e-14	27.9
WP_001163787.1\|688473_688731_+	hypothetical protein	NA	NA	NA	NA
WP_001296206.1\|689261_690407_-	hypothetical protein	NA	NA	NA	NA
WP_089438313.1\|691606_691786_-\|transposase	transposase	NA	NA	NA	NA
WP_000255956.1\|691931_692954_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.1
WP_072093906.1\|692950_693646_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.3e-118	88.4
WP_000813432.1\|694671_695274_-	hypothetical protein	NA	NA	NA	NA
WP_001304240.1\|695367_695646_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001296203.1\|695769_696966_-\|transposase	IS110-like element ISEc20 family transposase	NA	NA	NA	NA
WP_001336659.1\|697729_697906_+	hypothetical protein	NA	NA	NA	NA
WP_000221519.1\|698545_699115_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_000271042.1\|699280_699682_+	hypothetical protein	NA	NA	NA	NA
WP_001221618.1\|699669_700080_+	hypothetical protein	NA	NA	NA	NA
WP_000656349.1\|702394_703429_-	phosphotriesterase	NA	NA	NA	NA
WP_000739817.1\|703431_704397_-	DMT family transporter	NA	NA	NA	NA
WP_001066372.1\|704450_705209_-	hypothetical protein	NA	NA	NA	NA
WP_000667429.1\|705222_706437_-	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_000589885.1\|707438_708212_-	YaiO family outer membrane beta-barrel protein	NA	NA	NA	NA
WP_077249421.1\|708213_708795_-	acetyltransferase	NA	NA	NA	NA
WP_000854360.1\|708772_709969_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_001297930.1\|709982_710636_-	PIG-L family deacetylase	NA	NA	NA	NA
WP_001542270.1\|711683_712907_+	phosphoadenosine phosphosulfate reductase	A0A068F1U8	Mycobacterium_phage	2.0e-61	33.5
WP_000502870.1\|712891_713536_+	transcriptional regulator	A0A0F7L444	uncultured_marine_virus	8.2e-54	50.5
WP_000422741.1\|713947_714373_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000624722.1\|714369_714720_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000080195.1\|714750_716364_+\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6

DBSCAN-SWA_5

821457 : 909703

103

Escherichia_phage(22.73%)

portal,tRNA,integrase,tail,terminase,transposase,holin,plate,capsid

attL 821272:821331|attR 863884:864008

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
821272:821331	attL	NA	NA	NA	NA
WP_001531780.1\|821457_822474_-\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	1.1e-126	63.6
WP_000833838.1\|822442_822706_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	1.2e-06	38.0
WP_000916334.1\|822915_823098_-	hypothetical protein	NA	NA	NA	NA
WP_000100753.1\|823097_823667_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	6.1e-37	49.2
WP_000151806.1\|823663_825880_-	hypothetical protein	H9C157	Pectobacterium_phage	4.7e-101	35.6
WP_000388260.1\|825910_826231_-	hypothetical protein	NA	NA	NA	NA
WP_001296165.1\|827241_827655_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.7e-09	49.1
WP_000360804.1\|827753_827984_+	transcriptional regulator	H6WRX5	Salmonella_phage	1.5e-21	63.2
WP_000431205.1\|828042_828519_+	hypothetical protein	H9C162	Pectobacterium_phage	1.9e-23	48.6
WP_000943914.1\|828558_828783_+	hypothetical protein	H9C163	Pectobacterium_phage	6.1e-17	54.1
WP_001023813.1\|828779_829535_+	hypothetical protein	H9C164	Pectobacterium_phage	2.4e-41	68.5
WP_000609322.1\|829524_830940_+	AAA family ATPase	H9C165	Pectobacterium_phage	6.6e-173	66.7
WP_000214056.1\|830978_831389_+	hypothetical protein	NA	NA	NA	NA
WP_000918616.1\|831390_831627_+	hypothetical protein	NA	NA	NA	NA
WP_000875806.1\|831623_831935_+	hypothetical protein	A0A222YXX1	Escherichia_phage	1.2e-34	65.7
WP_000661082.1\|831931_832156_+	hypothetical protein	NA	NA	NA	NA
WP_001531776.1\|832837_833626_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	1.1e-39	69.8
WP_001237642.1\|833800_834724_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_000536231.1\|835912_836611_+	hypothetical protein	Q858R8	Enterobacteria_phage	1.5e-117	91.4
WP_001138663.1\|837073_837679_-	hypothetical protein	NA	NA	NA	NA
WP_000224749.1\|837688_838177_-	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	6.4e-27	42.7
WP_000536919.1\|838575_838809_-	hypothetical protein	NA	NA	NA	NA
WP_000847617.1\|839052_839694_+	hypothetical protein	NA	NA	NA	NA
WP_001025459.1\|839845_840025_+	hypothetical protein	NA	NA	NA	NA
WP_000057010.1\|840102_840699_+	DUF1367 family protein	H9C173	Pectobacterium_phage	1.5e-70	64.1
WP_000717783.1\|840695_840989_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-34	70.5
WP_000064384.1\|840988_841660_+	antitermination protein	Q7Y3X2	Yersinia_phage	1.9e-16	33.5
WP_001294589.1\|841772_842156_+	hypothetical protein	NA	NA	NA	NA
WP_000172496.1\|842155_842428_+\|holin	phage holin family protein	A0A0A0YPY6	Escherichia_phage	9.8e-09	42.9
WP_000131873.1\|842427_842907_+	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	4.6e-62	68.8
WP_000734931.1\|842914_843109_+	hypothetical protein	NA	NA	NA	NA
WP_001531775.1\|843168_843414_-	hypothetical protein	NA	NA	NA	NA
WP_000168117.1\|843782_844349_+	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	2.9e-31	46.2
WP_000148195.1\|844335_846198_+\|terminase	phage terminase large subunit family protein	A0A1I9KF19	Aeromonas_phage	1.1e-191	53.2
WP_000203897.1\|846197_846431_+	hypothetical protein	NA	NA	NA	NA
WP_000126513.1\|846427_848002_+\|portal	phage portal protein	E4WL21	Enterobacteria_phage	8.6e-190	64.0
WP_001145892.1\|848001_849309_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.9e-106	53.7
WP_000206292.1\|849308_849638_+	hypothetical protein	A0A2R9YJN3	Escherichia_phage	2.0e-08	39.5
WP_001283997.1\|849696_850731_+\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	6.6e-106	56.5
WP_000105179.1\|850765_851185_+	DNA-packaging protein	NA	NA	NA	NA
WP_001531773.1\|851181_851562_+	hypothetical protein	NA	NA	NA	NA
WP_000774516.1\|851593_852274_+	hypothetical protein	NA	NA	NA	NA
WP_000015612.1\|852270_852807_+	hypothetical protein	NA	NA	NA	NA
WP_000079174.1\|852787_853690_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_000901289.1\|853692_854034_+\|plate	phage baseplate assembly protein	D4HTV2	Vibrio_phage	1.1e-20	51.6
WP_000633314.1\|854030_854951_+\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	6.4e-68	47.8
WP_000203868.1\|854953_855580_+\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	2.0e-25	38.8
WP_000829621.1\|855572_856757_+\|tail	phage tail protein	J9QDX3	Clostridium_phage	2.5e-16	35.2
WP_000626358.1\|856756_857146_+	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	9.4e-05	30.8
WP_000117510.1\|857142_858645_+\|tail	tail sheath protein	R9TMQ0	Vibrio_phage	5.5e-69	33.5
WP_000785563.1\|858662_859175_+\|tail	phage tail protein	NA	NA	NA	NA
WP_000444667.1\|859187_859469_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001018353.1\|859577_861218_+	hypothetical protein	A0A2I7R3J9	Vibrio_phage	1.2e-19	29.3
WP_001531768.1\|861253_861643_+\|tail	phage tail protein	E5FFG4	Burkholderia_phage	1.0e-14	37.9
WP_001531767.1\|861804_862029_+	hypothetical protein	NA	NA	NA	NA
WP_001296152.1\|863243_863663_+	hypothetical protein	G8C7Q7	Escherichia_phage	1.8e-49	68.8
WP_000847882.1\|864134_864800_+	UPF0149 family protein YecA	NA	NA	NA	NA
863884:864008	attR	NA	NA	NA	NA
WP_000797555.1\|864850_866062_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000377224.1\|866252_866492_+	YecH family protein	NA	NA	NA	NA
WP_000917208.1\|866529_867027_-	non-heme ferritin	NA	NA	NA	NA
WP_001237881.1\|867198_867522_-	hypothetical protein	NA	NA	NA	NA
WP_010723106.1\|867785_867872_+	stress response protein AzuC	NA	NA	NA	NA
WP_000082127.1\|867986_868238_+	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_000179469.1\|868315_868819_-	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000548680.1\|869613_870603_+	arabinose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001187827.1\|870672_872187_+	L-arabinose ABC transporter ATP-binding protein AraG	A0A285PWH2	Cedratvirus	1.3e-12	29.7
WP_000100203.1\|872201_873188_+	L-arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_064673865.1\|873354_874155_+	trehalose-phosphatase	NA	NA	NA	NA
WP_001296148.1\|874129_875554_+	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_000122413.1\|875560_875989_-	universal stress protein UspC	NA	NA	NA	NA
WP_001295647.1\|876768_877119_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_001291603.1\|877121_877700_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_000906342.1\|877826_878714_+	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_000795641.1\|878710_879637_+	flagellar motor protein MotB	NA	NA	NA	NA
WP_001531763.1\|879641_881606_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_000147302.1\|881626_882130_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_001296146.1\|882274_883936_+	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-10	40.3
WP_000204320.1\|884226_885087_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_000036371.1\|885089_886139_+	chemotaxis response regulator protein-glutamate methylesterase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
WP_000763867.1\|886153_886543_+	chemotaxis protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
WP_000983600.1\|886553_887198_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_001278946.1\|887386_888535_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_000066973.1\|888527_890606_+	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_001202076.1\|890605_890998_+	flagellar protein FlhE	NA	NA	NA	NA
WP_001025326.1\|891050_892784_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
WP_001490174.1\|892999_893566_+	VOC family protein	NA	NA	NA	NA
WP_001185734.1\|893579_894326_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001214293.1\|894713_895814_+	cytochrome c	NA	NA	NA	NA
WP_000176764.1\|895838_898268_+	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	NA	NA	NA
WP_000564759.1\|898303_899275_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000019588.1\|899271_900015_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000252980.1\|900055_900451_-	hypothetical protein	NA	NA	NA	NA
WP_000639277.1\|900503_901322_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.5e-72	99.2
WP_000891625.1\|901318_901885_-	hydrolase	NA	NA	NA	NA
WP_001258676.1\|902194_903967_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_077249130.1\|903959_904412_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_000907234.1\|904440_905181_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001295503.1\|905215_905737_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_001024911.1\|905738_906341_-	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_072093883.1\|906411_906477_+	hypothetical protein	NA	NA	NA	NA
WP_000580323.1\|906615_907227_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_000568520.1\|907235_908246_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.6e-09	25.5
WP_099156422.1\|908355_909703_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	8.7e-74	52.4

DBSCAN-SWA_6

1401732 : 1471447

Stx2-converting_phage(25.0%)

capsid,holin,protease,integrase,transposase,terminase,head,tail,portal

attL 1430618:1430632|attR 1472411:1472425

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000422062.1\|1401732_1402782_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5
WP_000559273.1\|1403001_1403760_+	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	23.4
WP_001278898.1\|1403756_1404347_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_001000715.1\|1404403_1404712_-	hypothetical protein	NA	NA	NA	NA
WP_023141019.1\|1404721_1405708_-	hypothetical protein	NA	NA	NA	NA
WP_001291206.1\|1405913_1406789_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001296033.1\|1407001_1408897_-	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001295575.1\|1408924_1409545_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001285702.1\|1409541_1410423_-	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001700591.1\|1410560_1410605_+	trp operon leader peptide	NA	NA	NA	NA
WP_001194644.1\|1410696_1412259_+	anthranilate synthase component I	NA	NA	NA	NA
WP_000763535.1\|1412258_1413854_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001195273.1\|1413857_1415216_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	3.9e-37	41.2
WP_000209513.1\|1415227_1416421_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_000443082.1\|1416420_1417227_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_001296031.1\|1417602_1417878_+	hypothetical protein	S5MQL6	Escherichia_phage	1.1e-10	52.9
WP_001348267.1\|1417874_1418432_+	Rha family transcriptional regulator	Q8H9L9	Vibrio_phage	4.2e-30	63.8
WP_000937495.1\|1418843_1419113_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.3e-20	79.4
WP_000240999.1\|1419169_1419838_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001421220.1\|1420036_1420219_-	recombinase family protein	A0A0C4UR34	Shigella_phage	1.4e-24	95.0
WP_001513292.1\|1420344_1421313_+	hypothetical protein	A0A0F7LDR4	Escherichia_phage	6.5e-47	38.8
WP_001164137.1\|1421328_1421856_+\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	8.4e-73	77.7
WP_000972097.1\|1421886_1422420_-\|tail	tail fiber assembly protein	A0A077SL44	Escherichia_phage	1.8e-67	70.1
WP_023363168.1\|1422421_1425247_-\|tail	tail protein	Q858V4	Yersinia_virus	9.0e-04	63.6
WP_001016257.1\|1425708_1426455_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001298859.1\|1426469_1428011_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_000514710.1\|1428651_1432125_-	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.7
1430618:1430632	attL	NA	NA	NA	NA
WP_061089814.1\|1432467_1433100_-\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	3.0e-101	97.6
WP_000194730.1\|1433045_1433789_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	4.3e-147	97.6
WP_001296027.1\|1433799_1434498_-\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	5.8e-130	97.4
WP_000807937.1\|1434497_1434839_-\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	9.0e-60	95.6
WP_000212991.1\|1434831_1438074_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	91.6
WP_001513217.1\|1438121_1438331_-	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_000710949.1\|1438426_1438801_-\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	1.7e-64	99.2
WP_001275441.1\|1438815_1439532_-\|tail	tail protein	A0A0P0ZDV1	Stx2-converting_phage	3.6e-127	99.6
WP_000133388.1\|1439598_1439943_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_000573391.1\|1439939_1440386_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_001007905.1\|1440382_1440733_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125990.1\|1440742_1441069_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_000267294.1\|1441065_1443651_-\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	100.0
WP_001063099.1\|1443596_1443818_-	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000173031.1\|1443862_1445800_-\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	100.0
WP_063611971.1\|1445863_1447525_-\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	98.6
WP_000958366.1\|1447521_1448085_-\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.6e-82	92.0
WP_000829185.1\|1448375_1448741_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.5e-60	93.4
WP_000095741.1\|1448782_1448983_+	DUF3950 domain-containing protein	H6WZK6	Escherichia_phage	4.3e-30	98.5
WP_000736382.1\|1449181_1449397_-	hypothetical protein	NA	NA	NA	NA
WP_012578895.1\|1449482_1449668_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	2.7e-18	98.4
WP_032140280.1\|1449889_1449976_-	hypothetical protein	NA	NA	NA	NA
WP_000992071.1\|1450530_1451064_-	lysozyme	Q6H9V6	Enterobacteria_phage	4.8e-100	95.5
WP_000369850.1\|1451169_1451442_+	hypothetical protein	NA	NA	NA	NA
WP_000193278.1\|1451407_1451752_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.8e-37	95.2
WP_000284510.1\|1451756_1451972_-\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_016230612.1\|1452122_1453976_-	SASA family carbohydrate esterase	Q08JA2	Stx2-converting_phage	0.0e+00	90.3
WP_000871291.1\|1454236_1454572_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_023142244.1\|1454852_1454984_-	DUF3927 domain-containing protein	H6WZJ7	Escherichia_phage	1.1e-05	100.0
WP_000024331.1\|1455785_1456835_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	4.4e-198	95.4
WP_000917751.1\|1456986_1457184_-	hypothetical protein	Q9MC00	Enterobacteria_phage	6.1e-29	98.5
WP_001513213.1\|1457410_1458232_-	antitermination protein	K7P7B9	Enterobacteria_phage	1.7e-80	60.1
WP_000140014.1\|1458228_1458609_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.9e-35	64.5
WP_001265085.1\|1458609_1459665_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.0e-90	48.4
WP_001329966.1\|1459666_1459939_-	hypothetical protein	I6PCV7	Cronobacter_phage	5.5e-12	49.2
WP_000018429.1\|1460106_1460319_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	5.2e-26	90.0
WP_000150294.1\|1460499_1461165_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_001151161.1\|1461339_1461765_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.2e-63	94.0
WP_000450998.1\|1461780_1462551_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.6e-80	64.5
WP_000788950.1\|1462572_1463319_-	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	4.0e-113	83.8
WP_000095675.1\|1463325_1464288_-	DNA-binding protein	S5FM81	Shigella_phage	1.4e-70	56.4
WP_000693845.1\|1464310_1464736_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000471549.1\|1464732_1464948_-	transcriptional regulator	NA	NA	NA	NA
WP_000103687.1\|1464997_1465714_+	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	1.7e-52	42.0
WP_000379589.1\|1465986_1466142_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_001171951.1\|1466301_1466520_+	hypothetical protein	NA	NA	NA	NA
WP_023142248.1\|1466568_1466736_-	hypothetical protein	NA	NA	NA	NA
WP_000449179.1\|1467085_1467274_+	hypothetical protein	NA	NA	NA	NA
WP_001090200.1\|1467270_1467462_+	DUF1482 family protein	NA	NA	NA	NA
WP_016230610.1\|1467554_1470026_+	exonuclease	A0A192Y6E0	Salmonella_phage	5.7e-55	56.0
WP_000113189.1\|1470090_1470339_+	excisionase	NA	NA	NA	NA
WP_000113700.1\|1470316_1471447_+\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	3.4e-103	51.4
1472411:1472425	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1609526 : 1655235

Enterobacteria_phage(56.0%)

capsid,tRNA,lysis,holin,integrase,terminase,head,tail,portal

attL 1628310:1628324|attR 1656904:1656918

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000654172.1\|1609526_1609805_-	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	9.9e-25	55.4
WP_000290538.1\|1609801_1611823_-	hypothetical protein	A0A0E3M0V5	Enterobacteria_phage	7.2e-181	72.3
WP_001531667.1\|1611881_1615364_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
WP_023149564.1\|1615424_1616027_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-88	85.6
WP_023146277.1\|1615963_1616707_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.0e-148	97.2
WP_001152626.1\|1616711_1617410_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	5.1e-134	99.6
WP_000847375.1\|1617409_1617739_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	2.8e-58	99.1
WP_000840216.1\|1617735_1620297_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	98.4
WP_000459457.1\|1620289_1620724_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000479203.1\|1620705_1621128_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-68	94.3
WP_001295979.1\|1621143_1621884_-\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	1.6e-130	98.0
WP_000683150.1\|1621891_1622287_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	2.9e-70	98.5
WP_000985120.1\|1622283_1622862_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	92.7
WP_000753018.1\|1622873_1623227_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	2.2e-61	98.3
WP_000158908.1\|1623238_1623637_-	DNA packaging protein from bacteriophage origin	A0A0K2FIR1	Enterobacteria_phage	1.0e-62	98.5
WP_000063293.1\|1623678_1624704_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	7.8e-192	99.4
WP_001295978.1\|1624759_1625092_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_000123268.1\|1625101_1626421_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.1e-230	97.7
WP_001295977.1\|1626401_1628003_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-309	98.9
WP_000198149.1\|1627999_1628206_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001027261.1\|1628202_1630128_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
1628310:1628324	attL	NA	NA	NA	NA
WP_000453620.1\|1630102_1630648_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	6.8e-94	98.3
WP_000881610.1\|1631211_1631394_-	hypothetical protein	NA	NA	NA	NA
WP_000830178.1\|1631600_1631927_-	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_001298464.1\|1632407_1632701_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
WP_001228695.1\|1632791_1632974_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001180486.1\|1633190_1633667_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	7.3e-84	94.9
WP_000544528.1\|1633653_1633959_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
WP_001097224.1\|1634280_1634970_-	antiterminator Q	I6PDF8	Cronobacter_phage	4.9e-57	48.5
WP_000971096.1\|1634966_1635107_-	YlcG family protein	K7PHH3	Enterobacteria_phage	8.5e-09	68.9
WP_001099488.1\|1635103_1635466_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	1.6e-59	95.7
WP_000774479.1\|1635462_1635753_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.3e-48	95.8
WP_000224914.1\|1635745_1635916_-	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_001053005.1\|1635915_1636371_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	1.6e-59	66.9
WP_072147164.1\|1636367_1636469_-	hypothetical protein	NA	NA	NA	NA
WP_000700202.1\|1636818_1637862_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_022645049.1\|1637898_1642164_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_000788794.1\|1642413_1643115_-	replication protein P of bacteriophage	M1FJ72	Enterobacteria_phage	1.5e-125	97.0
WP_001435464.1\|1643111_1644041_-	replication protein	A0A0M5M7Y1	Salmonella_phage	6.1e-111	64.1
WP_001182900.1\|1644127_1644667_-	hypothetical protein	K7PJT7	Enterobacteria_phage	2.6e-61	67.0
WP_001067458.1\|1644736_1644967_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_000858975.1\|1645071_1645761_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_000233576.1\|1646356_1646563_+	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000995418.1\|1646638_1646935_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	8.9e-48	98.0
WP_000100847.1\|1646940_1647726_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000186848.1\|1647722_1648403_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_000149537.1\|1648399_1648582_+	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-27	98.3
WP_000548516.1\|1648554_1648746_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	1.8e-25	93.7
WP_021533932.1\|1648756_1649038_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	3.0e-45	95.7
WP_000763374.1\|1649136_1649358_+	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.3e-32	93.2
WP_000002139.1\|1649357_1649684_+	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	9.8e-48	95.7
WP_000490213.1\|1649667_1649907_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.7e-39	96.2
WP_000088653.1\|1650046_1650283_+	excisionase	NA	NA	NA	NA
WP_000741335.1\|1650272_1651415_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	3.6e-206	100.0
WP_000444487.1\|1651528_1652779_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_001248677.1\|1652950_1653604_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000476093.1\|1653613_1654075_+	phosphatase NudJ	NA	NA	NA	NA
WP_001295972.1\|1654128_1655235_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
1656904:1656918	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1852343 : 1939629

104

Burkholderia_virus(25.35%)

portal,tRNA,lysis,holin,integrase,plate,transposase,terminase,head,tail,capsid

attL 1870566:1870582|attR 1933096:1933112

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295930.1\|1852343_1853129_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_000899600.1\|1853264_1854044_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_000436917.1\|1854020_1854914_-	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_000011610.1\|1855067_1855814_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000350057.1\|1855810_1855993_-	protein YcaR	NA	NA	NA	NA
WP_000056492.1\|1856044_1857277_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000570547.1\|1857313_1858300_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_000551259.1\|1858296_1860045_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	3.3e-57	29.8
WP_000705731.1\|1860081_1862346_-	ComEC family protein	NA	NA	NA	NA
WP_000167336.1\|1862551_1862836_-	integration host factor subunit beta	A7KV42	Bacillus_phage	3.2e-10	40.2
WP_000140327.1\|1862995_1864669_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_000125016.1\|1864779_1865463_-	(d)CMP kinase	NA	NA	NA	NA
WP_029364556.1\|1865635_1866418_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_001281701.1\|1866561_1866951_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.5e-31	54.2
WP_001170114.1\|1866922_1867372_-	regulatory protein GemA	A4JWM5	Burkholderia_virus	6.1e-24	45.1
WP_000206212.1\|1867373_1867580_-	hypothetical protein	NA	NA	NA	NA
WP_000631813.1\|1867569_1867800_-	hypothetical protein	NA	NA	NA	NA
WP_000132039.1\|1867796_1868480_-	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	1.1e-32	36.1
WP_000763554.1\|1868476_1868692_-	hypothetical protein	NA	NA	NA	NA
WP_001295929.1\|1868706_1869003_-	hypothetical protein	NA	NA	NA	NA
WP_000632576.1\|1869012_1869285_-	hypothetical protein	NA	NA	NA	NA
WP_001140136.1\|1869573_1870104_-	host-nuclease inhibitor protein Gam	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
WP_000843446.1\|1870131_1870401_-	hypothetical protein	NA	NA	NA	NA
WP_000960679.1\|1870403_1871570_-	AAA family ATPase	A4JWN1	Burkholderia_virus	2.2e-121	59.4
1870566:1870582	attL	NA	NA	NA	NA
WP_063611941.1\|1871580_1873350_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JWN2	Burkholderia_virus	1.2e-227	69.4
WP_063611942.1\|1873365_1873683_-	hypothetical protein	NA	NA	NA	NA
WP_000533817.1\|1873682_1874603_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	1.6e-74	56.2
WP_000047759.1\|1874613_1874922_-	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	2.7e-23	55.9
WP_000123378.1\|1874974_1875163_-	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	3.9e-17	71.0
WP_000031013.1\|1875256_1875613_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000783854.1\|1875729_1876494_-	DNA adenine methylase	A2I2Y7	Vibrio_virus	5.2e-100	64.4
WP_001069611.1\|1876684_1876900_-	hypothetical protein	NA	NA	NA	NA
WP_000972294.1\|1876898_1877303_+	hypothetical protein	NA	NA	NA	NA
WP_000194951.1\|1877278_1878007_-	hypothetical protein	NA	NA	NA	NA
WP_000793146.1\|1878137_1878488_+	membrane protein	A4JWP3	Burkholderia_virus	1.5e-22	53.0
WP_001104440.1\|1878490_1879231_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-62	51.4
WP_000264665.1\|1879214_1879865_+	hypothetical protein	J9SVN7	Pseudomonas_phage	2.8e-09	32.9
WP_000175099.1\|1879861_1880188_+	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-17	48.6
WP_000227701.1\|1880187_1880499_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000124060.1\|1880498_1881044_+	DUF3486 family protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
WP_000167500.1\|1881040_1882636_+	hypothetical protein	A4JWJ4	Burkholderia_virus	6.5e-185	62.8
WP_000090684.1\|1882635_1884132_+	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	9.7e-167	59.0
WP_000117548.1\|1884112_1884934_+\|head	phage head morphogenesis protein	A4JWJ6	Burkholderia_virus	1.8e-98	61.9
WP_000135514.1\|1884936_1885395_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.6e-30	44.8
WP_001273074.1\|1885609_1886725_+	hypothetical protein	A4JWJ9	Burkholderia_virus	9.4e-98	51.6
WP_001286908.1\|1886739_1887693_+	hypothetical protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
WP_000537457.1\|1887702_1888041_+	DUF2190 family protein	NA	NA	NA	NA
WP_000271668.1\|1888042_1888489_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_001101804.1\|1888488_1888953_+	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_012602372.1\|1888949_1889204_+	hypothetical protein	NA	NA	NA	NA
WP_000729834.1\|1889193_1890621_+\|tail	tail protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
WP_000034294.1\|1890620_1891142_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.8e-67	67.6
WP_000110114.1\|1891144_1891426_+	hypothetical protein	NA	NA	NA	NA
WP_000084213.1\|1891523_1891859_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001202894.1\|1891782_1891941_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000016538.1\|1892016_1894968_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.8e-86	29.9
WP_000458387.1\|1894967_1895852_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
WP_012602373.1\|1895848_1896064_+	membrane protein	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_000808007.1\|1896051_1897206_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	1.9e-85	47.6
WP_000148266.1\|1897202_1897799_+\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	3.2e-36	45.2
WP_000859111.1\|1897853_1898201_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	5.9e-35	62.4
WP_001219098.1\|1898191_1899295_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.4e-106	55.2
WP_000138756.1\|1899287_1899866_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
WP_000527461.1\|1899868_1901200_+\|tail	tail fiber protein	A0A0K2FIZ6	Escherichia_phage	4.8e-40	44.4
WP_000072165.1\|1901199_1901814_+\|tail	tail assembly protein	Q9MCR5	Enterobacteria_phage	2.5e-60	60.5
WP_023142129.1\|1901820_1902282_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	3.9e-34	50.0
WP_064767240.1\|1902292_1902733_-\|tail	tail fiber protein	K7PH60	Enterobacterial_phage	7.1e-41	55.6
WP_000904922.1\|1902792_1903365_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
WP_000445240.1\|1903620_1904904_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000057158.1\|1904974_1906063_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	2.7e-81	46.8
WP_000642852.1\|1906261_1906954_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_000194832.1\|1907083_1908844_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_001295917.1\|1909249_1910107_+	formate transporter FocA	NA	NA	NA	NA
WP_001292822.1\|1910161_1912444_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.0e-162	41.5
WP_000468308.1\|1912763_1912982_-	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_001576679.1\|1913063_1914227_-	phage late control D family protein	Q7Y4C6	Escherichia_virus	5.9e-204	97.4
WP_000978911.1\|1914226_1914706_-\|tail	phage tail protein	Q7Y4C7	Escherichia_virus	3.3e-84	98.7
WP_000785970.1\|1917159_1917279_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_001031303.1\|1917311_1917587_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_001251408.1\|1917643_1918162_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001576673.1\|1918174_1919365_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	3.1e-224	99.2
WP_001576672.1\|1919676_1920153_-	hypothetical protein	NA	NA	NA	NA
WP_001576671.1\|1920593_1920971_+	hypothetical protein	NA	NA	NA	NA
WP_001016257.1\|1922024_1922771_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001298859.1\|1922785_1924327_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001576667.1\|1924586_1927211_-\|tail	phage tail protein	Q858V4	Yersinia_virus	0.0e+00	95.7
WP_001576666.1\|1927221_1927752_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	2.3e-102	99.4
WP_001121498.1\|1927744_1928653_-\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	1.7e-161	99.7
WP_000127163.1\|1928657_1929005_-\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
WP_001576664.1\|1929001_1929637_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	1.2e-113	99.1
WP_001001786.1\|1929703_1930156_-	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	8.2e-77	100.0
WP_000917151.1\|1930148_1930616_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	6.1e-83	100.0
WP_001576659.1\|1930723_1931149_-\|lysis	LysB family phage lysis regulatory protein	U5N3W5	Enterobacteria_phage	1.5e-64	93.6
WP_001576658.1\|1931136_1931562_-	hypothetical protein	U5N096	Enterobacteria_phage	1.0e-57	96.5
WP_001576656.1\|1931576_1932074_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.4e-92	99.4
WP_000123124.1\|1932073_1932355_-\|holin	holin	A0A0F7LDF8	Escherichia_phage	3.7e-43	100.0
WP_000846399.1\|1932358_1932562_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
WP_000988633.1\|1932561_1933071_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_001576654.1\|1933170_1933914_-\|terminase	terminase endonuclease subunit	Q858W5	Yersinia_virus	1.6e-125	98.8
1933096:1933112	attR	NA	NA	NA	NA
WP_001576652.1\|1933917_1934991_-\|capsid	phage major capsid protein, P2 family	Q94MI3	Enterobacteria_phage	2.2e-200	98.9
WP_001085955.1\|1935049_1935904_-\|capsid	GPO family capsid scaffolding protein	Q94MH0	Enterobacteria_phage	5.2e-133	98.2
WP_000156861.1\|1936077_1937850_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.8
WP_001576650.1\|1937849_1938884_+\|portal	phage portal protein	M1SV64	Escherichia_phage	7.9e-200	98.8
WP_001576649.1\|1939209_1939629_-	hypothetical protein	Q6K1E9	Salmonella_virus	5.7e-56	76.3

DBSCAN-SWA_9

1942945 : 2002336

Enterobacteria_phage(69.49%)

portal,tRNA,holin,integrase,plate,terminase,head,tail,capsid

attL 1956024:1956043|attR 1994681:1994700

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001576643.1\|1942945_1945225_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	97.9
WP_001576641.1\|1945214_1945490_-	hypothetical protein	U5N3W1	Enterobacteria_phage	1.9e-44	98.9
WP_001576640.1\|1945486_1945711_-	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	1.5e-34	97.3
WP_001576638.1\|1945710_1946013_-	hypothetical protein	Q7Y4C1	Escherichia_virus	1.6e-44	96.0
WP_001576637.1\|1946012_1946237_-	DUF2732 family protein	S4TP68	Salmonella_phage	5.2e-32	98.6
WP_000217677.1\|1946300_1946801_-	hypothetical protein	A0A0F7LBQ6	Escherichia_phage	4.5e-92	100.0
WP_001576635.1\|1946978_1947335_-	hypothetical protein	A0A0F7LDH4	Escherichia_phage	2.0e-62	98.3
WP_000072552.1\|1947439_1947751_+	helix-turn-helix transcriptional regulator	Q1JS25	Enterobacteria_phage	4.3e-53	100.0
WP_000023390.1\|1947844_1948840_+\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	5.4e-190	100.0
WP_000067979.1\|1948871_1949669_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	1.3e-21	26.6
WP_000109283.1\|1949765_1950914_-	MFS transporter	NA	NA	NA	NA
WP_000165876.1\|1951227_1951854_+	hydrolase	NA	NA	NA	NA
WP_000534666.1\|1951889_1952753_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000213098.1\|1952754_1953372_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
WP_000850306.1\|1953382_1955827_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	6.6e-221	49.8
1956024:1956043	attL	NA	NA	NA	NA
WP_000023739.1\|1956126_1957119_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	1.3e-103	56.2
WP_001368591.1\|1957188_1957530_-	helix-turn-helix transcriptional regulator	Q1JS45	Enterobacteria_phage	4.7e-16	51.2
WP_001204236.1\|1957634_1958156_+	transcriptional regulator	NA	NA	NA	NA
WP_000856387.1\|1958160_1958583_+	hypothetical protein	NA	NA	NA	NA
WP_001287828.1\|1958589_1958781_-	hypothetical protein	NA	NA	NA	NA
WP_000776267.1\|1958918_1959269_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	8.1e-56	93.1
WP_000159455.1\|1959279_1959558_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	3.1e-34	79.3
WP_000514277.1\|1959569_1959812_+	DUF4754 domain-containing protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_000021715.1\|1959808_1959922_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.8e-09	89.2
WP_000543036.1\|1960015_1960426_+	hypothetical protein	NA	NA	NA	NA
WP_000985157.1\|1960449_1960653_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.5e-25	83.6
WP_000153700.1\|1960649_1960916_+	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	2.0e-30	75.9
WP_000104290.1\|1960912_1961212_+	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	2.4e-40	88.9
WP_000013455.1\|1961534_1961765_+	hypothetical protein	A0A0A7NV48	Enterobacteria_phage	9.1e-32	97.4
WP_000599382.1\|1961837_1962203_+	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	1.7e-61	97.5
WP_021526466.1\|1962209_1965032_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	98.3
WP_000686485.1\|1965108_1966068_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	4.2e-179	99.1
WP_000211282.1\|1966072_1966387_+	plasmid partition protein	A0A0A7NPT5	Enterobacteria_phage	4.1e-19	52.3
WP_000193205.1\|1966470_1967313_-	hypothetical protein	NA	NA	NA	NA
WP_001068329.1\|1967352_1967850_-	DUF4760 domain-containing protein	NA	NA	NA	NA
WP_000236495.1\|1968573_1969098_+	hypothetical protein	NA	NA	NA	NA
WP_000087814.1\|1969112_1970159_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	2.2e-202	99.7
WP_000613780.1\|1970158_1971910_-\|terminase	terminase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.8
WP_001262655.1\|1972064_1972901_+\|capsid	phage capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	2.7e-150	99.6
WP_001055083.1\|1972924_1973977_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	1.4e-188	94.3
WP_000632309.1\|1974022_1974823_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	6.9e-127	89.1
WP_000063100.1\|1974924_1975419_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.9e-87	97.0
WP_000864901.1\|1975418_1975619_+\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_001342221.1\|1975621_1975945_+\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.7e-47	93.5
WP_000072341.1\|1975941_1976334_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	1.9e-69	96.9
WP_000780577.1\|1976330_1976726_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	1.0e-59	93.3
WP_000202148.1\|1976864_1978742_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	2.7e-299	80.2
WP_000921127.1\|1978765_1979233_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	3.5e-83	95.5
WP_000356366.1\|1979225_1979861_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.1e-114	99.5
WP_001271941.1\|1979857_1980439_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	3.3e-102	98.4
WP_000213444.1\|1980435_1980786_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	3.5e-59	99.1
WP_001111954.1\|1980789_1981686_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	3.3e-154	97.7
WP_000071703.1\|1981678_1982209_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	3.6e-92	98.2
WP_021538277.1\|1982211_1984197_+\|tail	phage tail fiber protein	A0A0A7NV63	Enterobacteria_phage	3.2e-173	86.0
WP_000972134.1\|1984199_1984733_+\|tail	tail fiber assembly protein	C9DGR0	Escherichia_phage	4.2e-96	98.9
WP_001554335.1\|1984761_1985289_-\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	2.6e-90	93.7
WP_023363133.1\|1985290_1986076_-	hypothetical protein	Q858V4	Yersinia_virus	1.1e-108	76.6
WP_000905061.1\|1986303_1986903_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.8e-98	98.9
WP_000979945.1\|1986931_1987420_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.4e-85	99.4
WP_000853410.1\|1987432_1990240_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	90.1
WP_000333503.1\|1990226_1990382_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	9.7e-22	96.1
WP_000651577.1\|1990390_1990765_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	9.9e-36	71.5
WP_064673892.1\|1990820_1991333_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	4.3e-90	96.5
WP_000005447.1\|1991332_1992517_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	8.4e-222	97.5
WP_000132830.1\|1992674_1993784_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.3e-195	94.9
WP_000488106.1\|1993824_1994085_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078916.1\|1994276_1994417_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
WP_000886683.1\|1994722_1996015_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
1994681:1994700	attR	NA	NA	NA	NA
WP_000067797.1\|1996105_1997449_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_001295343.1\|1997459_1998071_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000077041.1\|1998229_2002336_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7

DBSCAN-SWA_10

4638547 : 4685516

Stx2-converting_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000997995.1\|4638547_4640086_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.2e-281	93.9
WP_000624646.1\|4641213_4641564_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.4e-36	62.1
WP_000435655.1\|4641560_4641986_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	3.6e-34	74.2
WP_085949591.1\|4642357_4642495_-	hypothetical protein	NA	NA	NA	NA
WP_001149834.1\|4642646_4643564_+	N-acetylneuraminate lyase	NA	NA	NA	NA
WP_000629094.1\|4643597_4644473_+	N-acetylmannosamine kinase	NA	NA	NA	NA
WP_000376547.1\|4644521_4645994_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.2e-06	22.7
WP_000948500.1\|4645997_4646828_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001296386.1\|4646873_4647584_+	N-acetylneuraminic acid channel protein	NA	NA	NA	NA
WP_000865295.1\|4647596_4648706_+	N-acetylneuraminate epimerase	NA	NA	NA	NA
WP_001030790.1\|4648767_4649691_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001282578.1\|4649726_4650461_-	transcriptional regulator NanR	NA	NA	NA	NA
WP_000274668.1\|4650560_4651547_+	hypothetical protein	Q08JA2	Stx2-converting_phage	4.0e-108	57.7
WP_096928816.1\|4651698_4652926_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	7.2e-168	94.4
WP_001223344.1\|4653426_4655517_+	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
WP_001305021.1\|4656348_4656621_+	hypothetical protein	NA	NA	NA	NA
WP_001296382.1\|4656911_4657271_+	hypothetical protein	NA	NA	NA	NA
WP_000266542.1\|4657274_4657490_+	hypothetical protein	NA	NA	NA	NA
WP_001254932.1\|4662270_4663422_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_001034083.1\|4664018_4667906_-\|protease	serine protease autotransporter toxin Sat	Q9LA58	Enterobacterial_phage	1.2e-227	39.0
WP_000973516.1\|4668849_4671051_-	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_000750130.1\|4671132_4672410_-	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_021526487.1\|4672406_4674149_-	aerobactin synthase IucC	NA	NA	NA	NA
WP_001287500.1\|4674148_4675096_-	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_001296374.1\|4675096_4676821_-	aerobactin synthase IucA	NA	NA	NA	NA
WP_000074472.1\|4676956_4678150_+	MFS transporter	NA	NA	NA	NA
WP_001296373.1\|4678867_4679296_-	DUF417 family protein	NA	NA	NA	NA
WP_000109147.1\|4679335_4679896_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001110186.1\|4679937_4680198_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001513409.1\|4682031_4682145_+	hypothetical protein	NA	NA	NA	NA
WP_099156432.1\|4682235_4683361_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	2.5e-146	96.6
WP_023146305.1\|4683330_4683546_-	hypothetical protein	A0A0N7C1Y0	Escherichia_phage	1.7e-27	85.2
WP_000080195.1\|4683902_4685516_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6

DBSCAN-SWA_11

4976169 : 4983309

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001279004.1\|4976169_4976808_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	74.5
WP_000590411.1\|4976804_4978067_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
WP_000847996.1\|4978063_4978972_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.9e-117	76.2
WP_001296319.1\|4979167_4979935_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	57.4
WP_001141293.1\|4979985_4980642_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	3.3e-50	46.1
WP_000103863.1\|4980747_4983309_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP041339

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

23879 : 56277

Escherichia_phage(38.46%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000080195.1\|23879_25493_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000624722.1\|25523_25874_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|25870_26296_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_001312861.1\|26653_26812_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_001309233.1\|26891_27071_+	hypothetical protein	NA	NA	NA	NA
WP_001276217.1\|27091_27811_-	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_000845953.1\|27807_28242_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_000006003.1\|30394_30628_-	DUF905 domain-containing protein	NA	NA	NA	NA
WP_000290834.1\|30685_31213_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	6.0e-47	74.4
WP_001298559.1\|32061_32625_-	class I SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	4.7e-21	37.3
WP_000170695.1\|32671_34033_-	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_000218642.1\|34084_34315_-	hypothetical protein	NA	NA	NA	NA
WP_001027493.1\|35352_35544_-	hypothetical protein	NA	NA	NA	NA
WP_001763816.1\|35540_35963_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001671341.1\|36009_36312_-	antirestriction protein	NA	NA	NA	NA
WP_011161242.1\|36407_36980_-	YubH family protein	NA	NA	NA	NA
WP_000274503.1\|37679_38114_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001104881.1\|38127_38349_-	hypothetical protein	NA	NA	NA	NA
WP_000085883.1\|38349_39033_-	DNA methylase	A0A2I7RE86	Vibrio_phage	5.6e-29	37.4
WP_032146011.1\|39109_39403_-	hypothetical protein	NA	NA	NA	NA
WP_000959884.1\|39549_40512_+	plasmid segregation protein ParM	A0A222YXF2	Escherichia_phage	4.1e-94	53.9
WP_000361389.1\|40514_40865_+	protein stbB	NA	NA	NA	NA
WP_001333089.1\|40987_41269_-	hypothetical protein	NA	NA	NA	NA
WP_071557810.1\|43079_43220_-	hypothetical protein	NA	NA	NA	NA
WP_001067858.1\|43210_43915_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000608644.1\|44063_45326_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_000239590.1\|45581_46457_+	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_001393253.1\|46503_46836_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_001067855.1\|49157_49862_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_002063889.1\|51055_51598_-	AAA family ATPase	NA	NA	NA	NA
WP_000557452.1\|51610_52471_-	aminoglycoside N-acetyltransferase AAC(3)-IIa	NA	NA	NA	NA
WP_001067855.1\|52577_53282_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001334766.1\|53913_54744_-	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_063840321.1\|54874_55429_-	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001067855.1\|55572_56277_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041338

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041337

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP041339

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection