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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP045236 Burkholderia cepacia strain BC16 chromosome 2, complete sequence 4 crisprs csa3,DinG,cas3,RT 0 3 1 0
NZ_CP045237 Burkholderia cepacia strain BC16 chromosome 3, complete sequence 2 crisprs RT 0 0 0 0
NZ_CP045235 Burkholderia cepacia strain BC16 chromosome 1, complete sequence 1 crisprs cas3,DEDDh,csa3,DinG,c2c9_V-U4 0 0 4 0

Results visualization

1. NZ_CP045236
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045236_1 1055789-1055870 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045236_2 1368481-1368543 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045236_3 2466005-2466143 Orphan NA
2 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045236_4 3016330-3016649 Orphan NA
4 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP015092 Pelagibaca abyssi strain JLT2014 plasmid pPABY3, complete sequence 13327-13352 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP021406 Celeribacter manganoxidans strain DY25 plasmid pDY25-B, complete sequence 116566-116591 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP010590 Phaeobacter gallaeciensis strain P11 plasmid pP11_b, complete sequence 125366-125391 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP010611 Phaeobacter inhibens strain P92 plasmid pP92_a, complete sequence 232961-232986 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP010675 Phaeobacter gallaeciensis strain P75 plasmid pP75_b, complete sequence 163279-163304 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NC_023148 Phaeobacter gallaeciensis DSM 26640 plasmid pGal_B134, complete sequence 125457-125482 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP010791 Phaeobacter gallaeciensis strain P63 plasmid pP63_x_draft, complete sequence 163279-163304 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP010631 Phaeobacter inhibens strain P78 plasmid pP78_b, complete sequence 163279-163304 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP010716 Phaeobacter piscinae strain P18 plasmid pP18_a, complete sequence 231017-231042 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP020332 Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM259, complete sequence 256363-256388 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP010638 Phaeobacter gallaeciensis strain P73 plasmid pP73_b, complete sequence 163279-163304 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP010662 Phaeobacter inhibens strain P74 plasmid pP74_a, complete sequence 232961-232986 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP004395 Celeribacter indicus strain P73 plasmid pP73B, complete sequence 133593-133618 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP023408 Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence 59995-60020 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 MH588547 Caulobacter phage CcrSC, complete genome 20319-20344 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 MH588547 Caulobacter phage CcrSC, complete genome 313861-313886 4 0.846
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP032325 Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence 222031-222056 5 0.808
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP039913 Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence 46484-46509 5 0.808
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP029174 Methylobacterium sp. DM1 plasmid pLVM1, complete sequence 237531-237556 5 0.808
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP007130 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence 820113-820138 5 0.808
NZ_CP045236_1 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder 1055817-1055842 26 NZ_CP007796 Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence 489674-489699 5 0.808
NZ_CP045236_3 3.2|2466088|30|NZ_CP045236|CRISPRCasFinder 2466088-2466117 30 AP014383 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S44-C10, *** SEQUENCING IN PROGRESS *** 36797-36826 6 0.8
NZ_CP045236_4 4.3|3016506|31|NZ_CP045236|CRISPRCasFinder 3016506-3016536 31 NZ_AP014705 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence 1073398-1073428 8 0.742
NZ_CP045236_4 4.3|3016506|31|NZ_CP045236|CRISPRCasFinder 3016506-3016536 31 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 871327-871357 8 0.742
NZ_CP045236_4 4.3|3016506|31|NZ_CP045236|CRISPRCasFinder 3016506-3016536 31 NZ_CP022193 Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence 36974-37004 9 0.71
NZ_CP045236_4 4.3|3016506|31|NZ_CP045236|CRISPRCasFinder 3016506-3016536 31 NZ_CP043499 Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence 433713-433743 9 0.71
NZ_CP045236_3 3.2|2466088|30|NZ_CP045236|CRISPRCasFinder 2466088-2466117 30 MN694696 Marine virus AFVG_250M540, complete genome 6021-6050 10 0.667
NZ_CP045236_4 4.3|3016506|31|NZ_CP045236|CRISPRCasFinder 3016506-3016536 31 NZ_CP014311 Burkholderia sp. PAMC 26561 plasmid unnamed4, complete sequence 174204-174234 10 0.677

1. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP015092 (Pelagibaca abyssi strain JLT2014 plasmid pPABY3, complete sequence) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaagacgcgcggcctgcccgccct	Protospacer
.**** ******* *********** 

2. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP021406 (Celeribacter manganoxidans strain DY25 plasmid pDY25-B, complete sequence) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaagacgcgcggcctgcccgccct	Protospacer
.**** ******* *********** 

3. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP010590 (Phaeobacter gallaeciensis strain P11 plasmid pP11_b, complete sequence) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaagacgcgcggcctgcccgccct	Protospacer
.**** ******* *********** 

4. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP010611 (Phaeobacter inhibens strain P92 plasmid pP92_a, complete sequence) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaagacgcgcggcctgcccgccct	Protospacer
.**** ******* *********** 

5. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP010675 (Phaeobacter gallaeciensis strain P75 plasmid pP75_b, complete sequence) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaagacgcgcggcctgcccgccct	Protospacer
.**** ******* *********** 

6. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NC_023148 (Phaeobacter gallaeciensis DSM 26640 plasmid pGal_B134, complete sequence) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaagacgcgcggcctgcccgccct	Protospacer
.**** ******* *********** 

7. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP010791 (Phaeobacter gallaeciensis strain P63 plasmid pP63_x_draft, complete sequence) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaagacgcgcggcctgcccgccct	Protospacer
.**** ******* *********** 

8. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP010631 (Phaeobacter inhibens strain P78 plasmid pP78_b, complete sequence) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaagacgcgcggcctgcccgccct	Protospacer
.**** ******* *********** 

9. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP010716 (Phaeobacter piscinae strain P18 plasmid pP18_a, complete sequence) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaagacgcgcggcctgcccgccct	Protospacer
.**** ******* *********** 

10. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP020332 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM259, complete sequence) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaagacgcgcggcctgcccgccct	Protospacer
.**** ******* *********** 

11. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP010638 (Phaeobacter gallaeciensis strain P73 plasmid pP73_b, complete sequence) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaagacgcgcggcctgcccgccct	Protospacer
.**** ******* *********** 

12. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP010662 (Phaeobacter inhibens strain P74 plasmid pP74_a, complete sequence) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaagacgcgcggcctgcccgccct	Protospacer
.**** ******* *********** 

13. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP004395 (Celeribacter indicus strain P73 plasmid pP73B, complete sequence) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaagacgcgcggcctgcccgccct	Protospacer
.**** ******* *********** 

14. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
tgcggcacgcgcgtcctgcccgccca	Protospacer
 **..********.************

15. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
atcaacccgcgcgccctgcccgacct	Protospacer
* **** *************** ** 

16. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 4, identity: 0.846

agcaacacgcgcgccctgcccgccca	CRISPR spacer
atcaacccgcgcgccctgcccgacct	Protospacer
* **** *************** ** 

17. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 5, identity: 0.808

agcaacacgcgcgccctgcccgccca	CRISPR spacer
gccaacacccgccccctgcccgcccc	Protospacer
. ****** *** ************ 

18. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP039913 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence) position: , mismatch: 5, identity: 0.808

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaacacacgtgccctgcccgcctt	Protospacer
.*******.**.************. 

19. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP029174 (Methylobacterium sp. DM1 plasmid pLVM1, complete sequence) position: , mismatch: 5, identity: 0.808

agcaacacgcgcgccctgcccgccca	CRISPR spacer
ggcaacacgcgcaccctgctcgcctt	Protospacer
.***********.******.****. 

20. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 5, identity: 0.808

agcaacacgcgcgccctgcccgccca	CRISPR spacer
tcgaacacgcgcgcccggctcgccca	Protospacer
   ************* **.******

21. spacer 1.1|1055817|26|NZ_CP045236|CRISPRCasFinder matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 5, identity: 0.808

agcaacacgcgcgccctgcccgccca	CRISPR spacer
gccaacacccgccccctgcccgcccc	Protospacer
. ****** *** ************ 

22. spacer 3.2|2466088|30|NZ_CP045236|CRISPRCasFinder matches to AP014383 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S44-C10, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

caccgcatcaccgcatcacctcatcaccgc	CRISPR spacer
ctctacatcaccgcatcacctcagcaacac	Protospacer
* *..****************** ** *.*

23. spacer 4.3|3016506|31|NZ_CP045236|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.742

gggtggcgcggtgacgtcgaaccgtcgcgag	CRISPR spacer
accgtacgcggcgccgtcgaaccgtcgcgag	Protospacer
.    .*****.* *****************

24. spacer 4.3|3016506|31|NZ_CP045236|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

gggtggcgcggtgacgtcgaaccgtcgcgag	CRISPR spacer
gaagagcgcggtgacgtcgaacggccgcggt	Protospacer
*.. .***************** *.****. 

25. spacer 4.3|3016506|31|NZ_CP045236|CRISPRCasFinder matches to NZ_CP022193 (Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.71

gggtggcgcggtgacgtcgaaccgtcgcgag	CRISPR spacer
ccaaggcgcggagacgtcgaaccggcgctcc	Protospacer
  . ******* ************ ***   

26. spacer 4.3|3016506|31|NZ_CP045236|CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

gggtggcgcggtgacgtcgaaccgtcgcgag	CRISPR spacer
aaaggtgacggcgacgacgaaccgtcgcgag	Protospacer
... *  .***.**** **************

27. spacer 3.2|2466088|30|NZ_CP045236|CRISPRCasFinder matches to MN694696 (Marine virus AFVG_250M540, complete genome) position: , mismatch: 10, identity: 0.667

--------caccgcatcaccgcatcacctcatcaccgc	CRISPR spacer
tcaattatcacctcatcacctcatcacctc--------	Protospacer
        **** ******* *********        

28. spacer 4.3|3016506|31|NZ_CP045236|CRISPRCasFinder matches to NZ_CP014311 (Burkholderia sp. PAMC 26561 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.677

gggtggcgcggtgacgtcgaaccgtcgcgag	CRISPR spacer
attctcggcggtgacgtcgaccggtcgcgac	Protospacer
.  .   ************* * ******* 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 922113 : 1005420 56 Enterobacteria_phage(20.0%) transposase,protease,plate NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP045237
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045237_1 578808-578902 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045237_2 1182885-1183061 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP045235
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045235_1 1521694-1521804 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 409719 : 454596 35 uncultured_Caudovirales_phage(50.0%) tail,plate,protease NA
DBSCAN-SWA_2 907048 : 915141 8 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_3 1085308 : 1093598 8 Bacillus_phage(16.67%) NA NA
DBSCAN-SWA_4 2180308 : 2258976 75 uncultured_Caudovirales_phage(30.0%) head,integrase,plate,portal,tail,capsid,terminase,holin,protease attL 2178026:2178044|attR 2249861:2249879
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage