CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP043062	Bordetella parapertussis strain J835 chromosome, complete genome	7 crisprs	RT,csa3,cas3,DEDDh,DinG	0	2	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP043062_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043062_1

1051870-1051956

Orphan

Consensus_repeat	Method
CGTGGTGCCTGTCCCCGCGGGGAC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP043062_1

>merge|NZ_CP043062|1|1051870-1051956|CRISPRCasFinder
CGTGGTGCCTGTCCCCGCGGGGACGGATACCGTCTTAGGAGCGGGGAGGGTGGTGCGGGGGAACGTGGTGCCTGTCCCCGCGGGGAC

>NZ_CP043062|1|1|1051870-1051956|CRISPRCasFinder
CGTGGTGCCTGTCCCCGCGGGGAC	GGATACCGTCTTAGGAGCGGGGAGGGTGGTGCGGGGGAA
CGTGGTGCCTGTCCCCGCGGGGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043062.1\|WP_010927776.1\|1042991_1044968_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|379843
NZ_CP043062.1\|WP_003809026.1\|1037157_1037526_+\|DUF861-domain-containing-protein	unknown	unknown	gnl\|CDD\|225981
NZ_CP043062.1\|WP_003809022.1\|1034451_1034886_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_CP043062.1\|WP_003809064.1\|1060077_1061358_+\|arsenic-transporter	unknown	unknown	gnl\|CDD\|185342
NZ_CP043062.1\|WP_010927775.1\|1040169_1040862_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|182251
NZ_CP043062.1\|WP_003809041.1\|1042316_1042943_+\|hydrolase	unknown	unknown	gnl\|CDD\|238494
NZ_CP043062.1\|WP_076879797.1\|1058309_1059602_-\|TIGR03862-family-flavoprotein	unknown	unknown	gnl\|CDD\|274820
NZ_CP043062.1\|WP_010927780.1\|1056488_1057958_-\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP043062.1\|WP_003809070.1\|1062407_1063544_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP043062.1\|WP_010927779.1\|1054110_1056285_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|274550
NZ_CP043062.1\|WP_010927782.1\|1059754_1060081_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
NZ_CP043062.1\|WP_153567883.1\|1045747_1051744_-\|retention-module-containing-protein	unknown	unknown	gnl\|CDD\|333740
NZ_CP043062.1\|WP_010927778.1\|1051978_1052644_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP043062.1\|WP_003809046.1\|1044983_1045667_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226198
NZ_CP043062.1\|WP_041937359.1\|1037625_1040121_+\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP043062.1\|WP_003809025.1\|1035944_1036871_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NZ_CP043062.1\|WP_003809067.1\|1061398_1062364_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NZ_CP043062.1\|WP_003809056.1\|1056262_1056478_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043062.1\|WP_010927773.1\|1032540_1033329_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
NZ_CP043062.1\|WP_003809053.1\|1052665_1054108_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902

Protein	Function_ID	Function_description	E-value
NZ_CP043062.1\|WP_010927776.1\|1042991_1044968_-\|EAL-domain-containing-protein	gnl\|CDD\|379843	pfam16448, LapD_MoxY_N, LapD/MoxY periplasmic domain. This domain is the N-terminal periplasmic domain of the LapD and MoxY receptor proteins.	3.66319e-38
NZ_CP043062.1\|WP_003809026.1\|1037157_1037526_+\|DUF861-domain-containing-protein	gnl\|CDD\|225981	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only].	1.25112e-24
NZ_CP043062.1\|WP_003809022.1\|1034451_1034886_-\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	3.80366e-22
NZ_CP043062.1\|WP_003809064.1\|1060077_1061358_+\|arsenic-transporter	gnl\|CDD\|185342	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB.	0
NZ_CP043062.1\|WP_010927775.1\|1040169_1040862_+\|HD-domain-containing-protein	gnl\|CDD\|182251	PRK10119, PRK10119, putative hydrolase; Provisional.	2.80135e-80
NZ_CP043062.1\|WP_003809041.1\|1042316_1042943_+\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	1.08247e-67
NZ_CP043062.1\|WP_076879797.1\|1058309_1059602_-\|TIGR03862-family-flavoprotein	gnl\|CDD\|274820	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.	1.21991e-156
NZ_CP043062.1\|WP_010927780.1\|1056488_1057958_-\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.98618e-74
NZ_CP043062.1\|WP_003809070.1\|1062407_1063544_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.85561e-148
NZ_CP043062.1\|WP_010927779.1\|1054110_1056285_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP043062.1\|WP_153567883.1\|1045747_1051744_-\|retention-module-containing-protein	gnl\|CDD\|333740	NF012211, tand_rpt_95, tandem-95 repeat protein. This 95-amino acid repeat occurs in tandem in proteins that may be several thousand amino acids long.	4.28941e-17
NZ_CP043062.1\|WP_010927778.1\|1051978_1052644_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.19301e-24
NZ_CP043062.1\|WP_003809046.1\|1044983_1045667_-\|hypothetical-protein	gnl\|CDD\|226198	COG3672, COG3672, Predicted transglutaminase-like cysteine proteinase [General function prediction only].	8.27062e-29
NZ_CP043062.1\|WP_041937359.1\|1037625_1040121_+\|copper-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP043062.1\|WP_003809025.1\|1035944_1036871_-\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.55135e-31
NZ_CP043062.1\|WP_003809067.1\|1061398_1062364_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.10162e-113
NZ_CP043062.1\|WP_010927782.1\|1059754_1060081_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	2.26872e-12
NZ_CP043062.1\|WP_010927773.1\|1032540_1033329_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.27641e-113
NZ_CP043062.1\|WP_003809053.1\|1052665_1054108_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.83731e-118

>NZ_CP043062.1|WP_153567883.1|1045747_1051744_-|retention-module-containing-protein
MANSSPAVVTAVTGRAWIRNSDGSLTELHEGSKVPQGSDIVTASGSTVALQVDGGMPLVIGEGREVAVTPDLNGGGGDASEAAVALPTTTDSERLLAALQDGRDPFDELDPTAAVIGGSGDSAGSSFVRLAKILESTTPMDLAYPNPGRGEDGVRTFLGGATAGADDEAAPAPANQAPNALDDLGQTRQGQTLRGNLMLNDSDPDGDPLAVVSVNGRPMTSGGLTLPGSGGGTFTVQPDGSYTFVPGNEHQSLGEGQTTTTTITYTITDPSGATSTATLTVTVTGTNDAPTLTPGVTLDDQANDDGEAITPVDISGQFEDIDNGDTLTFTADGLPPGLTLDPATGIISGTLDNSASQGGANNDGVYTVEITATDANGASVSQTFEWDVNNPAPTAVADTGTTDEDTTLTVTDPAQGVLKNDTDPDNDDLHVSAVNGQPGNVGAAIAGDNGGTFTLNADGTYTFNPGPDFQNLAKDATAETSITYTVSDGEGGTSSATLTVTVTGTNDAPTLTPNVTLDDQANNDGEAITPVDISGQFEDVDNGDTLTFTADGLPPGLTLDPATGIISGTLDNSASQGGANNDGVYTVEITATDANGASVSQTFEWDVNNPAPTAVADTGTTDEDTTLTVTDPAQGVLRNDTDPDNDDLHVSAVNGQPANVGVAIAGDNGGTFTLNADGTYSFNPGNAFQHLAQGDSVETSISYTVSDGEGGTSTTTLTVTVTGVNDTGAISVNLGADDGKVYEAGLDNAADDSETTGGTITVSASDGISSVTIGGQTFTVAQLSGDLSSLPAINTTEGTLTITGYTPSADGKSADITFSYTLNEAQTHSQPGNDTITDNIGVTVTGNGDSETSSSFNITIVDDVPTFQTVTDTVLANEAGQTQTGTLEFESGADGVGSLNITGITGLPNDWTTSAMNNASVNIFSPDGTHVFTVTLNTDGTYTVDQLATRPGTTESVNMGSQITNSPQASYDFGIASVTVLHSNQQVQFNGKGSNVPNVSHEFGIGNTWFEGGESFQMTFESPMLNFNFGIATVNNPGSVKVTLFDGVNTLTLTVPVNAGDTSLSITQDQIQAAAAAAVPPISFGEFSTATLEGVGGLKVSLTTLSYTNSVPADDMDFTVHVTGTDGDGDPAQTEFDVTSGAEAAVVDAFNRVMEDSGDTVGGSVMLSTALAVVSVSVNGTDVTNATAGNPVTFHTGKGTLIVTGYDPQSGALSYTYTEKGQAHNHGNGKNSVHDDFTVTVTDSDGQERSGDLVIQILDSVPTAHADLDNVTEGVTQNVSAADGVLANDTSADGWHHAGAIVGVAAGDTGAISHGKVGQAIDGLYGKLTLNANGSYSYKANASGQGALPGDGQDVFTYTVRDADGDLTSTTLTINIDQFVAGSNDNNTITGGAGNDVMLGDQGGIKQNVTAGTSYNIALVLDLSDSMNDKWGSGSNKPTRLQTAKDALKALLENQLAVHDGEINVSLITFNGSSSALKKSITGLTPENVDEMVDILMGLKASSATPYGAAFDRTTQWFEGQPTVDSEGKPYKNLTFFLTDGEPSTEWSYNRDNEFAELAAISDVHGIGIGSGVSTSTLNKYDNTGGYYTGGQETHVNFSGNSNANNVNTWDKDGTGTVTKNDNAMRITDTTADGQAFKVTMNPDHRMNVTSAGGASFSFALSMGNKNPADKFEWVLMKWDGTQWNEVERGTDASTRTGIHGPGQYGFQFIVNDNSGGGQFYATVDTIRSYTSGRTGNSQTVLDPSDLESALIGGSQSTELAPVGNDKLYGGDGNDILFGDAINTDNLPWGVAGNPAKPADLPNGSGLEALKDFLFLKNGVQPTDADLHKYISENHALFDVDGDTRGGNDELHGGAGSDELHGGEGKDLLIGGQGDDILYGGDGSDTFKWELNDQGVVGAPARDTIKDFSNADIADGGDVLDLGELLQGENSGNLTQFLKFSSDGQDTVIQVNTQGHVNTQGADQTIVLENIDLTAGGTKDDAAIIQDLLSRHKLQVDQ
>NZ_CP043062.1|WP_003809046.1|1044983_1045667_-|hypothetical-protein
MPLSTRPRKAPRLALAALLSLACGWGGVHALDVDTGKLQSLAASRYGARGARAVDDWLQLLRNDTSASEANQLARVNAFWNQRVLSGEDTHIWGRADYWATPLETLGKGAGDCEDYVIGKYFSLISLGVPTEKLRFIYVRARIGGPYSNQQIAHMVLGYYPTPNAVPLVLDSLISTIMPANERRDLTPVFSFNADGVYVDGKQASPVDRLSRWRDLLLRMEREGLRP
>NZ_CP043062.1|WP_010927776.1|1042991_1044968_-|EAL-domain-containing-protein
MSILRRLLLSLTLAIGIILLGTLVLSINAARGYLSDQLQVQSTDAAVSLALSLSQPANNDPVTQELLVSALFDGGHFSLVRLADPQGAVMVERGAQPAASVPAWFQALAPLANRAASHAVSDGWRQIGEVTLVANDAYAWETLWASSLRMAALIMGAGVLWALFAFALVRWIEKRLLFQVSEQVRAIDSRASGEQAFARVAEFSGIVDALAQTRERVRATAEEQSSHIESLEVELNQDPVTGLANRKYFINEFRRALDEKPADSPALPAPLSSAGGHVLVFRQRDLTALNRHMPRQFIDQWLQSVCQRISALVTAQGLAQSLVARLNGSDFAVLLPHCAAPQAQVIADLVRAELRTLRIPVGEGGLCRWAMALADYAPGTQFNGVLARLDFGLTRAESAGDDHAVLVGPDNADPFSAAGQSAWMDALVTALDQQRFSLAFEPLHAVDGRLVRMEAMLMLHNDDAREPIPAMLFIPAAVRLNLSAECDLQAVRLALDWLAAQPGELAVRLSLPSLGKRSFLRQLELMLADRRAQVGRLYLEVDAHGLVDREGDVIALERIAAHFGAHVGLRRLAQQFGAMSRLHSLPLAYVKLGGGFVGGMSQSPGSRQLAGSVIDTARALNIDVYAEDVPDAATRDILASMGVEVMRGPGVTPPPAQE
>NZ_CP043062.1|WP_003809041.1|1042316_1042943_+|hydrolase
MGKRYAKLDKNNVAVLMVDHQVGLLSLVRDIDPDKFKNNVLAVADLATYFKLPTILTTSFEDGPNGPLVQELKDQFPEAPYIARPGQINAWDNEDFVKAVKATGKKQLLIAGVVTEVCVAFPALSAIEEGYEVFVVTDASGTFNEVTRHSAWSRMEQAGAQLMTWFGVACELHRDWRNDIEGLGALFSSHIPDYRNLIAAYTTVKGGK
>NZ_CP043062.1|WP_010927775.1|1040169_1040862_+|HD-domain-containing-protein
MTNPGDGAAGAVDCATLDHWRPRLAAIAAAAGQDDAAHDLGHLRRVWGAARAMLQAHPEADALVVLAASYLHDLVNLPKNHPERHLASRQAAAAARERLARAGFPAARLDAVAHAIEAHSFSAGIAPRTIEARIVQDADRLDALGPVGLARMFHVGGSLGRALAHPSDPLAAQRALDDSRYTLDHIEAKLARLPHGMQTEAGRRLGEQRLAWLRDFRAAFAAQWGGGQLR
>NZ_CP043062.1|WP_041937359.1|1037625_1040121_+|copper-translocating-P-type-ATPase
MNASSLAGAPSTGAISLPIEGMTCASCVGRVERALKAVPGVSDAVVNLATERADVRFAGAPDVGAAVQAVEQAGYAVAASTMELAVSGMTCASCVGRVERALKAVPGVRAASVNLATERAHVEIAGAVAPQALVQAVAAAGYEARPLDPGGAAADAAARRQAAELQGLRRALIVAAVFALPVFVLEMGSHMIPAFHHAVAGSIGVQNSWYIQFVLASIVLFGPGLRFFRKGVPALLRGAPDMNSLVAVGTAAAYAYSVIATFAAGVLPPGTVNVYYEAAAVIVALILLGRYLEARAKGNTSEAIKRLMGLQAKTARVRRDGATVEVPIAQVAAGDVVEVRSGERVPVDGQVIEGTSFVDESMISGEPVPVEKQPGAEIVGGTVNQNGALALRATKVGGDTVLAQIIRMVEQAQGSKLPIQALVDRITMWFVPAVMAVALATFAIWFVFGPDPALTFALVNAVAVLIIACPCAMGLATPTSIMVGTGRAAQLGVLFRKGEALQALKDARVVAVDKTGTLTKGRPELTDLVLAEGFERAAVLGKVAAVEAKSEHPIARAIVDAAQVEGARPGAIEAFESITGYGVAARVDGARVEIGADRYMARLELDVAVFAAEAARLGDEGKTPLYAAIDGHLAAMIAVADPIKNTTAAAIRALHGLGLKVAMITGDNRRTGEAIARQLGIDEVIAEVLPDGKVDAVKRLKAEHGALAYVGDGINDAPALAEADVGIAIGTGTGTDVAIEAADVVLMSGDLGGVPNAIALSQATMANIRQNLFWAFAYNVALIPVAAGVLYPVNGSLLSPVFAAGAMALSSVFVLSNALRLRRFAAPFAAR
>NZ_CP043062.1|WP_003809026.1|1037157_1037526_+|DUF861-domain-containing-protein
MPQHDKSRLVRIDTGPMINPVAGKPSRPIAGDASFRTVTAFEGGQGKVESGVWESTSGSFQSNTTGYIEYCHIIEGEARLVDPDGTVHAVKAGDAFIMPEGYTGRWEVDRHVKKIYFVTHLA
>NZ_CP043062.1|WP_003809025.1|1035944_1036871_-|VOC-family-protein
MTSHSTDHDTIGMPNLNLSLDHTGLIVFKLEDARQAFERLGFTLTPRSMHAGALTPGGPVVPWGSGNHCAMFRNGYFELLGLVEPDKPSTARRMLDRYEGLHIVAMDCESADAMHPQLTAAGVPAPAPATLERDAAFGPANDQTRRARFRNINLDGEAYPEARFIVIEHGTRDVLWQPHLLDHPNGATGLAAMYFAAADLSATLERFQRLLGTPSAHGDAYCFELRRGRFWVMSEAAMREHCPVLADGPVHRVAAACIEVRSLPALQEYLQARQIDYVAAPYLDGAAPSIWVAPAQASCAALQFIQAR
>NZ_CP043062.1|WP_003809022.1|1034451_1034886_-|PaaI-family-thioesterase
MSQQAARKLEKADIEAIFARSRFISAMNLEILDIDHAGSRFSVRMPLQDTYERGAPGTKQFHGGALAALIDVVGDFAIGMLVGGGVPTMNLRIDYLRPAVGDYVDGVAVVRKAGKSAAVVDIDILCPAGKLVAIGRGTYVPITG
>NZ_CP043062.1|WP_010927773.1|1032540_1033329_-|ABC-transporter-ATP-binding-protein
MNQAQHNGSAPVFRVQGLEVTYRSSRGPTTALEGFSTTVAEGEFLSILGPSGCGKSTLLKVAAGLLKPSAGVAELRGQAIDGPRRDVGIVFQHATLLPWQNVLDNVLLPIRTMGMDIAAGTARAHALLKTMGLEKFEQHYPHELSGGMQQRVGIARGLIHDPSLLLMDEPFAALDAMTREAMMVELQRIWSETRKSVMFITHSIPEAVFLSSKVVVLGPRPARVLREIDIDLPFPRTEETLASPKFAQLCAELRSLFSNVAH
>NZ_CP043062.1|WP_010927778.1|1051978_1052644_-|response-regulator-transcription-factor
MHATPVLLVTDDDLLWQHWRGLDAARWLPARGRGLASLQQWQGQGRQLVVLDASVARLPAWDAPQWQELTVGLRLVVASSRPSDAQGTQVFAAGAYGYCHSHAPLASLMQVLEVVSGGGIWMGRSLVTRLLKLVDERVPSAPAPWQHDRLTERENAVALRAAHGDSNADIAGELGITERTVKAHLSAAFEKLGVSDRLQLALCVHGISTRTPAPRTGTDGR
>NZ_CP043062.1|WP_003809053.1|1052665_1054108_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MQNTQNATLAAPPARQGSLLGALWRVPRGWIMGLFDRLLDGAERKDGPSPANYVGNAEWAIRQADARGSRVLLWASLLATLALLLWAGFGYIDEVVRGEGKVVPSRQVQIVQSLDGGIVEEILVRPGEAVETGQVLLKIDPTRFASSLGENNAEYLSLLAKAARLKALATGEPFVAPEKVLQEAPAIVEMERNTWQARTSELNATVNVAREQLKQREEELRETIAKRDQASASCGLTSRELQVTRPLLKSGAVSEVDLLRLQRDVARYCGEQKGAEAQIDRIGASIKEAQSKLQEAELNIRNQARSELSETNTKLATLREGQAALADRVKLADIRSPVRGTVKSLFSNTVGGVVQPGKDIIEIVPTDDTLLLEVRVLPRDIGFLHPDQKAEVKFTAYDFAIYGGLEGHVEQIGADTVTDEKGNSFYIVRVRTNSATLGDRKLPIIPGMVAEVHILTGKRTVLQYLLKPILRAKENAFTER
>NZ_CP043062.1|WP_010927779.1|1054110_1056285_-|type-I-secretion-system-permease/ATPase
MTTDKFSDPATRSWRADPHASHEDPLLDCLVELTRIHGVPATAQAPSSGLPLVEHRLTPALLPRAAARAQMSARTVKRTLDEISPELLPAILLLRGERACLLLGTAPGGKYLISHPELGASAVEMDADLLQEDYTGLACFVRPQFRFDARAPEVVKVRSRHWFWAAIAENRRLYRDALIAALLINVFAMAMPLFTMNVYDRVVPNNAIETLWVLALGIGLVVLFNLVLTTARAHVVDSASKRVDIRLSAQIMERVLDLRMEGRPVSVGSFAANLRSFESIRDFIASASITTLVDLPFTLLFLAALAWISPWLIAPPLVAIALILLVSLAAQARMETLTMASYQASAQRNATLVEALAGFEAVKTLNGQGAIQRNWERSTEFIAQNGGKLKLISASTVGFVQAMQQLVSVAVVIIGVFQAQESAMSMGGIIAASMIAGRCLTPFGQVAALLMQYQNARTSLGSIDNYMNLPVERPAGTEFLHRPVFQGGIEFRDVTFAYPGASQPALKKVSFKLAPGEKVGVIGRIGSGKTTLEKLALALYQPTEGAVLVDGVDVRQIDPADLRRAIGHVPQDPVLFYGSLRHNLAMGAPHADDASILAAANAAGVTEFANVHPNGFDMMIGERGESLSGGQRQSVAIARALINDPPILLLDEPSSNMDHQSESQLRKRLKAASADKTILLVTHRTALLDLVERLIVIDNGHIVADGPKEQVVEALRQGRVGRGS
>NZ_CP043062.1|WP_003809056.1|1056262_1056478_-|hypothetical-protein
MSASNDNGFSKLDADFVRVLEDLIDALIKNGTLRLTDLPPQAQRKLTERKRHRARLAEDLDLLDDDDGQVL
>NZ_CP043062.1|WP_010927780.1|1056488_1057958_-|TolC-family-outer-membrane-protein
MPTFSFKRTTAIVAVLFAPAAYAQQQAGTTLNQVVEQTLLSNPEIQAKYHDFRASMEGQNVARGGLRPQVNAQGFVGKEWRSNVPDRGSYNWSRPGYSVELRQLIFDGFRTSNDVKQAGYDKLGRFYELLATSDSTAYSAVQAYVDLQRYREMELLARQNYSLHEDTLKQIREHAESGVGRRVDLEQAGGRLALAQTNLMTESANLIDVQQRFQRITGMTPAVDLQPVPDVAGKLPQQPANFDDSLRMNPSFLAKQAYLQAANAGVASAKGAFSPKFEFVAATGRDREQPEPQYRDVQSSSVQLVMSYNLYRGGADSARVRQTAEQSYAARDVRDYTCRNVQQDLAVAWNNIVRLREQIPFLRDHEIATAKVRNAYREQFQIGQRSLLDLLDTENELFESRRALANGMADLQLAQYRWLALSHKILPALSVQPARDEMPEENAVLETTDEVLKLCNSPVPDVSRLAPVQVIYNSGAKPPTFVPADKARP
>NZ_CP043062.1|WP_076879797.1|1058309_1059602_-|TIGR03862-family-flavoprotein
MSPDSLSAVAAPQAGAPSPRAARVAIIGAGPAGLMAAETLAGHGLRIDVYDAMPSVGRKFLLAGRGGLNLTHSEAPQAFGARYGARADWVAQWLAQWDAQALRAWAHGLGVETFVGTSGRVFPREMKAAPLLRAWLARLRGAGVGFHMRHRWLGWPAGEPASPQALRFGTPDGALAVRADAVVLALGGASWARLGSDGAWTATLREHGVAVAPLRPANCGFEADWSEPMRQRATGQPAKAVAMALAPDGPWRRGEFVVTDSGIEGSLVYACSAGLRDAIDVRGAATAWLDLLPDWPAERVAAAVMHPRGARSMSSHLQSRLGIKGVKAALLRECAGAEAYADAGLLARRIKALPLRLLRTRPIDEAISSAGGVERAALDARLMLAKAPDVFCAGEMLDWEAPTGGYLLTAVMASGVVAGRGVLAWLRDGL
>NZ_CP043062.1|WP_010927782.1|1059754_1060081_+|helix-turn-helix-transcriptional-regulator
METNAAIKALVVLGHASRLTAFRLLVQAGAEGVAAGQLAQAMGIAPSSLSFHLKELVQAGLLEARQDGRFVIYAARYDTMAGLIAYLTDNCCQGAPCDAAPCTREPRA
>NZ_CP043062.1|WP_003809064.1|1060077_1061358_+|arsenic-transporter
MITAAVIFLFTLTLVIWQPRGLGIGWSACLGAAISLATGVVHWSDIPVVWGIVWNATAAFIAIIIVSLLLDEAGFFEWAALHVARWGRGRGRMLFAWIVLLGAAVSALFANDGAALILTPIVMAMLAALGFGAGATLAFVMAAGFVADTASLPLIVSNLVNIVSADYFGIGFNRYAAVMIPVTLVSVAATLAVLLLRFGASVPARYDASQLKAPRAAIRDPRTFRAGWMVLALLLVGFFGLEPLGVPVSATAAAAAAVLLAVAGRGHFISTRKVMREAPWHIVVFSLGMYLVVFGLRNAGLTQSLADLFGWFASHGLWAATYGVGLVTALLSSVMNNLPTVLVGALSIDASSASGAAREAMVYANVIGSDLGPKITPIGSLATLLWLHVLARKGVRISWGYYFKVGIVLTLPVLLLTLGALALRLS
>NZ_CP043062.1|WP_003809067.1|1061398_1062364_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MHSFKSALLASAVLALAAGTAGAADTYPGDKPIKIVAAFSPGSATDTSARIIAEELRKDLGANVIVENKPGAQGLIGTEYAVRQPGDGYTLTIASSSLNSINPGLFKKLPYDAQKDFTHISRLTTMPMLVLVRGDGDIKTLDQLVQKAKAGSLNYGYGSPGGQVGAVAFNNIAGIRAEGVPYKSQPPALTDLAGGQVDYVLGDLSVATPLLRAGKIRALAVSTEQRLPDLPEVPTFAETDYKAFDLVVWVGLSGPAGIPPEVAQRLNDSVNKALARPEIQEKFKGLGMTTAPNTLAQQQQFVQSQLDTWGRRMREANIQPE
>NZ_CP043062.1|WP_003809070.1|1062407_1063544_-|CoA-transferase
MQSSDSGGALAGLRVIDASRVLAGPFCGQMLGDHGAEVIKIESPEGDECRGFGPPFVDGASAYFRAVNRNKRSMVLDLNSEAGRETLWQLLETADVLIENFKASTLRAWGIADPAEITARFPRLVHCRITGFGDDGPLGQLPGYDAAVQAIAGLLSINGEAGGPPVRLGVPVVDLTTGMNAAIAVLLALQARHRTGRGQMADVALYDSAVSVAHPFLTNYLASGKTPGPSGNGHPNIVPYNVYRTRTCPLFIAVANDRLFAKLCAQLGVAELAADARFATNGQRVVNREALDAALSQAFAQVDGEPFGQQLLAQNVPAAPILDIAAVAAAPHTAHRRMVVQQPDYTGPGIPIKLSHTPAAIRRGPPALGEMAAPPPKR

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Crispr_ID: NZ_CP043062_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043062_2

2468339-2468425

Orphan

Consensus_repeat	Method
CTGTCCCCGCGGGGACAGGCACACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043062_2

>merge|NZ_CP043062|2|2468339-2468425|CRISPRCasFinder
CTGTCCCCGCGGGGACAGGCACACTGCCGTACGCCATCGACGCTAGCCCGCCAAGACGGTATCTGTCCCTGCGGGGACAGGCACACT

>NZ_CP043062|2|2|2468339-2468425|CRISPRCasFinder
CTGTCCCCGCGGGGACAGGCACACT	GCCGTACGCCATCGACGCTAGCCCGCCAAGACGGTAT
CTGTCCCTGCGGGGACAGGCACACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043062.1\|WP_010928346.1\|2460944_2462258_-\|pyrimidine-permease	unknown	unknown	gnl\|CDD\|132655
NZ_CP043062.1\|WP_033446709.1\|2478084_2479785_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NZ_CP043062.1\|WP_010928345.1\|2462517_2463837_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270236
NZ_CP043062.1\|WP_010928340.1\|2474286_2475114_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NZ_CP043062.1\|WP_065956693.1\|2475147_2475843_-\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|213222
NZ_CP043062.1\|WP_041937185.1\|2475835_2477116_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274034
NZ_CP043062.1\|WP_010928338.1\|2477125_2478103_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226706
NZ_CP043062.1\|WP_010928347.1\|2459276_2460914_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP043062.1\|WP_010928341.1\|2470774_2474005_-\|autotransporter-SphB3	unknown	unknown	gnl\|CDD\|377133
NZ_CP043062.1\|WP_010926447.1\|2481021_2481777_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180796
NZ_CP043062.1\|WP_010928344.1\|2463913_2465623_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_CP043062.1\|WP_010928336.1\|2479887_2480992_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP043062.1\|WP_003809596.1\|2466752_2467652_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP043062.1\|WP_003809615.1\|2458176_2458653_-\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693
NZ_CP043062.1\|WP_010927744.1\|2456924_2457875_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|289759
NZ_CP043062.1\|WP_003809599.1\|2465619_2466705_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP043062.1\|WP_010928348.1\|2456182_2456785_+\|YhbY-family-RNA-binding-protein	unknown	unknown	gnl\|CDD\|198171
NZ_CP043062.1\|WP_010928343.1\|2467662_2468307_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP043062.1\|WP_003809590.1\|2468487_2469252_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235910
NZ_CP043062.1\|WP_059565426.1\|2469433_2470654_+\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995

Protein	Function_ID	Function_description	E-value
NZ_CP043062.1\|WP_010928346.1\|2460944_2462258_-\|pyrimidine-permease	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP043062.1\|WP_033446709.1\|2478084_2479785_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NZ_CP043062.1\|WP_010928345.1\|2462517_2463837_+\|extracellular-solute-binding-protein	gnl\|CDD\|270236	cd13518, PBP2_Fe3_thiamine_like, Substrate binding domain of iron and thiamine transporters-like, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. On the other hand, thiamin is an essential cofactor in all living systems. Thiamin diphosphate (ThDP)-dependent enzymes play an important role in carbohydrate and branched-chain amino acid metabolism. Most prokaryotes, plants, and fungi can synthesize thiamin, but it is not synthesized in vertebrates. These periplasmic domains have high affinities for their respective substrates and serve as the primary receptor for transport. After binding iron and thiamine with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.04415e-40
NZ_CP043062.1\|WP_010928340.1\|2474286_2475114_-\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.42767e-89
NZ_CP043062.1\|WP_065956693.1\|2475147_2475843_-\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.35983e-113
NZ_CP043062.1\|WP_041937185.1\|2475835_2477116_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	9.67778e-160
NZ_CP043062.1\|WP_010928338.1\|2477125_2478103_+\|hypothetical-protein	gnl\|CDD\|226706	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown].	1.57718e-20
NZ_CP043062.1\|WP_010928347.1\|2459276_2460914_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	7.95515e-118
NZ_CP043062.1\|WP_010928341.1\|2470774_2474005_-\|autotransporter-SphB3	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	1.2867e-46
NZ_CP043062.1\|WP_010926447.1\|2481021_2481777_+\|SDR-family-oxidoreductase	gnl\|CDD\|180796	PRK07023, PRK07023, SDR family oxidoreductase.	5.47641e-103
NZ_CP043062.1\|WP_010928344.1\|2463913_2465623_+\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	3.58657e-90
NZ_CP043062.1\|WP_010928336.1\|2479887_2480992_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP043062.1\|WP_003809596.1\|2466752_2467652_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	7.08863e-33
NZ_CP043062.1\|WP_003809615.1\|2458176_2458653_-\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	7.10406e-83
NZ_CP043062.1\|WP_010927744.1\|2456924_2457875_+\|IS481-family-transposase	gnl\|CDD\|289759	pfam13011, LZ_Tnp_IS481, leucine-zipper of insertion element IS481. This is the upstream region of the conjoined ORF AB of insertion element 481. The significance of IS481 in the detection of Bordetella pertussis is discussed in. The B portion of the ORF AB carries the transposase activity in family rve, pfam00665.	3.75329e-40
NZ_CP043062.1\|WP_003809599.1\|2465619_2466705_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.76041e-148
NZ_CP043062.1\|WP_010928348.1\|2456182_2456785_+\|YhbY-family-RNA-binding-protein	gnl\|CDD\|198171	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome.	5.40171e-31
NZ_CP043062.1\|WP_010928343.1\|2467662_2468307_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	5.12316e-70
NZ_CP043062.1\|WP_003809590.1\|2468487_2469252_-\|SDR-family-oxidoreductase	gnl\|CDD\|235910	PRK07024, PRK07024, SDR family oxidoreductase.	4.78988e-141
NZ_CP043062.1\|WP_059565426.1\|2469433_2470654_+\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.13968e-78

>NZ_CP043062.1|WP_010928343.1|2467662_2468307_+|histidine-phosphatase-family-protein
MTEIWFIRHGETDWNRQRRLQGWQDIPLNESGREQARLLAERLRDTASEHPFAALYSSDLKRAHDTAASLSAALQLRVRTEPGIRERGFGVLEGLEMENLEQQAPQAAQAWRSRDPLRALEGGETLGQFQARIIATVDDLAARHASERILAVTHGGALDIIWRHASGVPLDAPRYAALLNVSINRVAIAQRKWEVLGWGDVEHIGAETGNDVTP
>NZ_CP043062.1|WP_003809596.1|2466752_2467652_+|LysR-family-transcriptional-regulator
MEIYQIRAFVTVARLGNLTKAAEALSLTQPAVTAQLKALEQSLGVALFDRAAGRLSLAKAGEALLPTAEALLVLGAQLKSEARQLQGQLQGVIDLGVPSEQPDFLRLGELAAALRQRLPLVELKTHVLPSTALLEQVGTARLAGALTIVAHPPRGVTWHALRSVRYRIALPASLADTLKRAGWRDIAQLPWLDGPSGSHLHLLLRDMFERHGLAPRVVMQNDDQSNLDALVRAGAGCALLREETALAGAAAGDFIVWGQARADATLGFIAPPEQAGEPMLVALISMIQKIWKPGAAVAT
>NZ_CP043062.1|WP_003809599.1|2465619_2466705_+|ABC-transporter-ATP-binding-protein
MKKVSVECRNIRLSYGRNEVLKDISIHIEPGEFFALLGPSGSGKSTLLRLIAGFNRQSHGQLLVDGRDIGATPPWDRNIGMVFQNYALWPHMTVWDNVAFGLVERRLPRAEIRDKVAAALELVGLADFGRRRPNQLSGGQQQRVALARTIVIEPQVLLLDEPLSNLDKKLRVQMRQDLLSLQRRLGITTIFVTHDQEEAMTTADRMAVLDHGVVQQIGAPSTLFDYPVNRFVANFVGTMNVLEGEVRERSRGGVVLAVDGVGELHLPVNGDAPQAGRLAASFRPHTVLIEMADGTGDARYVWLPGVVESSEFLGEFTRYQVQVGEQRLTADQHHLAGLSPFPVGAPVAVGLEPTQIRLLAA
>NZ_CP043062.1|WP_010928344.1|2463913_2465623_+|iron-ABC-transporter-permease
MTSTGTFRLPAGPALAALLVLAFLALFLVFPVGTVFYTAFVNADGSFTLGHFGAVFNQPLMKEAFFNSLYVAGWSSLLASLIAVPLAYFTVRFEFRGALLIQTLGVLPLIMPPFVGAMAMQLIFGRSGSVNLLLDDWLGITLPFMDGLNGVIFVESLHYFPFILMNLVVALRNIDGSMEEAAFNLGSRGFRLFCRIIFPLALPGYLAGTSLVFVKVFDDLGTPLVLGTTNMLAPQAYLRITQVGLEDPLGYVISVIMIGFSILALWLSARVLKGKDYSTLQKGGNAIHKRRLRPVESVLAYAWIGAVLLLVLSPHLGVLLLSLASVWSYAPLPDGYTLAHYTAVFTESQGMIANTLLYCGLAAGVDVVLGTAIAYLMLRTRLPARQWLDFIASAALAIPGIVLAIGYLRTFRGVEIPGTGVLLTSSWVLIMIAYSVRRLPYALRSCVAALQQINVSLEEAAESLGASRLRTIRRIVVPLMAGGMLAGFVTSFITAAVELSATIMLVTRDSQAPMSYGIYLYMQSAAGRGPGAALGVLAVVAVGIGTYVSHLLVERASARQRPARSGESS
>NZ_CP043062.1|WP_010928345.1|2462517_2463837_+|extracellular-solute-binding-protein
MQALQRQLAAIMAACAPALAGTVTVITSFPKDLTQAYKAAFEKAHPDIKLEILNKNTVSGIAFVRATPAGQRPEVFWASAPDAFEVLGRDKLLAKAPDVANPAVPDKIGSYPINDPSGMYMGQALAGYGIIYNTRYIKANKLPAPVEWKDLLAPHWFGHVGITAPSRSGTMHLTVETILQGEGWNDGWGTLLRMSGNASAVTERSFGVPDGVNNGQFGAGPVIDFFGLSSKYSKFPVDFVYPSETAIVPANIALIEGAKNTEEGKKFIAFTLSQAGQELLLEPKISRLPVLPYAALAGKIPPGYPDPAEIAKRSKVHFDADLSQARYYVVQSLFDQTITFRLKELQAATKAIYDAEAKLGERAGQGKAAELLAQARQLAWTPLVDAQRAADPAFLKLFAGNKKDAAVNQQITQLEGEWNGKARANYEQAQKLAREAAAL
>NZ_CP043062.1|WP_010928346.1|2460944_2462258_-|pyrimidine-permease
MSNTYFPRWRLADDTVPGAVIAPDERLSWPKNIAMGAQHVVAMFGSTVLAPLLMGFDPNVAILMSGIGTLIFFLFVGGRVPSYLGSSFAFIGGVVAVTGYVAPGANANIGVALGAIIACGLVYALIGLVVWAASARGNGARWIEAMMPPVVTGAVVAVIGLNLAPIAAKGAMGSSGFEASMALMTILCVGGIAVYTRGMVQRLLILVGLVLACVIYAVCANGLGLGAPMDFAKVAAAPWFGLPSFAAPVFEPQAMGLIVPVAIILVAENLGHVKAVAAMTGQDLDRCVGRAFVGDGVATMVSGAVGGTGVTTYAENIGVMAVTRIYSTLVFVVAAVIALVLGFSPKFGALIQTIPGPVLGGMSVVVFGLIAIAGARIWVVNQVDFSDNRNLIVAAVTLVLGAGDFSVKLGDFSMNGIGTATFGAIILYALLGLARRR
>NZ_CP043062.1|WP_010928347.1|2459276_2460914_+|HAMP-domain-containing-protein
MPMLERIKVRTAMVAVFACFLAVLMLSGALTWRNAGRSAAEIEGLNQVAVNQVDPLFEASGAALRARVALLEALANLQANHLDPVATLHQQAGAAQRQAATQFQRYVDVPKEPAAAELAATLQTRWRAYQSVLDELAAAVDAGQAEPALAAMNRAQQAEHAFQRDMEAFLARVQAHSDEVRSGAEDTHVVARWSAIALAALGVLLTLAGWLFVRRAVLRPLLEAGHHFDRIADGDLTARIEVRSANEIGALFAALKRMQEGLTRTIAVMRRGVDEINVGAAEISAGNANLSSRTEEQAAALEETAATMEELATTVKQNADNAAQANQLAAVSMQVAQRGGESVAQVVQTMHGISASSRQIADIVTVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRAAQAAKEIKALIESSVATVRAGSQQVASAGGTMDEVVASVQRVADIMGEISAASAQQASGIDQVSLAISQMDETTQQNTALVEQAAAAATAMEEQARHLAAAAAVFRTQGGAIIDVAAAPLAGPAGGHAALPPAAAR
>NZ_CP043062.1|WP_003809615.1|2458176_2458653_-|transcription-elongation-factor-GreA
MSAIPLTVRGAERLQQELHRLKTVERPAVISAIAEARAQGDLSENAEYDAARERQGFIEGRISELEGTLSNAHLIDPTALDAEGRAVFGATVEIEDLDSGDRLTYQIVGDVEADIKSNLISVSSPVARALIGKSEGDVVEVKVPAGVREYEVIGVRYL
>NZ_CP043062.1|WP_010927744.1|2456924_2457875_+|IS481-family-transposase
MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQRLPLWRIAREAGRSLATVARYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQNRNRGIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSGYVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSALGHQPPITRIPDVNNLLRIDT
>NZ_CP043062.1|WP_010928348.1|2456182_2456785_+|YhbY-family-RNA-binding-protein
MPISELTSRERSDLRSAAHPLRPVVLIGDNGLTDAVLKEIDLALTAHELIKVRAGGDDREAREAMLATICDTLSCAAVHHLGKTLILFRPDLRAAAAKAAADTPAKRRPSEPHTPKKMAAEGKRLTKTRPARKAAEAAAPAAGARPGRDDLNQAGRPARPSTRKASPGHAIPRRSGSALSLRAGARGGLAGRKPARANKQ
>NZ_CP043062.1|WP_003809590.1|2468487_2469252_-|SDR-family-oxidoreductase
MQHVFITGASSGLGQALARRYAADGARLGLLGRRAQALEALASSLPGQHRCYAVDVRDRAALHAAAQDFIAHCGGRVDVVIASAGVSAGTLTEAGEDYAVFKEIVDTNLLATVATFEPFIAGMRAARAGRLVGIASVAGVRGLPGAGAYSASKAAVATYCESLRLELAQAGVRVVTIAPGYVKTAMTAHNPYAMPFLMEADAFAGRAHAAIARGVSYRVIPWQMGVVAKLMRLLPDAVYDRLARDAPRKPRRGQ
>NZ_CP043062.1|WP_059565426.1|2469433_2470654_+|ISL3-family-transposase
MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCEQCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVTDRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFALHKGHRYATVVVDPISRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYELEIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNRDNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYKQAEQSGIAALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRRAYGYRDQEYFSLKIRAAFPGNAR
>NZ_CP043062.1|WP_010928341.1|2470774_2474005_-|autotransporter-SphB3
MAQASARGMGLRITSLAAALLGVYGAAGAAENRLECIGACPPGQPVAGAHYSGTNLSANREWVVYGEGSNAVFTLQGGSVTASGGLMGAVNAADGARVYLNQVSVRTDAGNGWEAPGVRAEYGALVNVRGGSIATVGGGSYGVQSLDSGTMIELNGTDIRTTDAYSDGLRAEFGGSIRAVGLTINTTGEHAVGAMGADDGTIALRDSRITTSGVDAYGLGTESQVLSPGGVLQVSNTAIQTSGKNAHGVYLQGGSSLNMSGGSIRTTGSGAAGLRVSNGSSVALNGVEVVASGPSLLSTLSATRQQSIVVGAGSNLTRNDGRLLLVRRVAGGELGQVTLTLKSGSYAAGNIENLAADGSRESSALTIVDVQSGAQWAGLVIDDTTAIVNGSQSGQHSGFSTAGDMVLEGGSAPVTFTGVSNIGGSSSLGAGSQTTFGGATTIGQSLAVLPGGSVAFNGPLTIGESVTGGQGTALSFNAPAIIGANVQGAGGAAFTFSGPAQVGGSVQGLDGASFRFSTSAPTAIAGGLSLAGGSSLGGGSPTTPIVVTGGADAVSGAILGGNLDIGGALRMTGASLAPGNSIGTVTVGSVGALSGSTYLAEVNAKGQSDLLVVRSGNVDLAGVSLVVGQENGTGGYVLNHDYTIIKTEAGKIVGEFAAASLDESLASTLVKLDPVKYGAQATQVSLSPDADKLAAARAGLTRNQSAVLDGALSVAGRNASADAVMLMSDTGQRAGALDQLSGEVHGSAVSALYSNTQLLNRTVARRMSANLGAGLLAGAPTAQAAGPAAASAMPGTAAYPLWADVVGNWSSFDAKDNAAKAKSNTAGLFIGGDVAVGAGWRVGGALGFTDGRIKADAVDSRSDVTSYTAALYGGNSWAAGKGKLNFLAGVGYTHHDIDSRRSVDVGGAQTLKADYKANTTQLFAELGYQVPVGASSSVEPYAGLAWFNNHSDSFDEDGGPAALHGSGQTDQITTFTLGLRGNTALQLGATETRLSAGLGWRHANGDVDATRKLAFIQGGGTAFTVAGSPVARDAAVLDLAAEVDVGRNAALGLAYGGQFGNGNKENTGSLYLKVRF
>NZ_CP043062.1|WP_010928340.1|2474286_2475114_-|TatD-family-hydrolase
MLIDTHCHLDAAEFDADRMAVARAAREAGVQAIVIPAVERANFATVRQLAHAVDSGAYALGIHPLYVARARDEDLDSLRRAIESALPDPRFVAIGEIGLDFFVAEIASGAPRERQERFYAAQLDLAAEYGLPVLLHVRRSQDILLKHLRRRPGVPGGIAHAFNGSAQQAGAFVEQGFALGLGGAMTYPRALQIRRHAADIGLDHLVLETDAPDIPPAWLYEPERRNTPGQLPRIAAELAALRGQAVADVARATTTTALRVLPRLGALLQDRAATP
>NZ_CP043062.1|WP_065956693.1|2475147_2475843_-|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD
MTEPNDTGPALQAEHLGKVYDEGPARIEVLSDVSLSVARGEMVAIVGASGSGKSTLLHILGLLDVPSSGTVSVDGVPAAGLSEKRKSALRNRSLGFVYQFHHLLPEFSALDNVAMPLIVRRENRDRVRAQAREVLELVGLAAREEHFPGQLSGGERQRVALARALVTRPACVLADEPTGNLDRHTAHNMFELLTRVNRESGTAFVIVTHDPELAARADRQLHMENGRLQPD
>NZ_CP043062.1|WP_041937185.1|2475835_2477116_-|lipoprotein-releasing-ABC-transporter-permease-subunit
MLKIPYELWIGARYAGMARIRQRRGRRDRFISFIAATSMAGIALGVAALIVVLSVMNGFQKEVRDRMLSVLPHIELYIPGAAPERVLQQWRQFAQAARANPEVKGEAPFVAAQGMLVRGQALRGVQVRGIDPATEGNVSNIPRQMVSGKLSDLVAGGFGAVLGSDLADGLGVKTGDTVLMLAPQGSISPAGFAPRMRQFTVVGIFSSGHYEYDSTLVFIDDEDAAKVFRESGTAGVRLRVADMQRAPEVAAELTKVLPPYVMAADWSRNNRTWFAAVQTEKRMMFLILALIVAVAAFNLLSSLVMAVKDKQSDIAILRTLGAGPGEVARIFLVQGALIGVVGTLLGVAGGIAIAYNVDVIVPFIERLLGVQFLPREVYFISALPSDPQADDIITIGLTSLVLSLLATLYPSWRASRLQPAQVLRHD
>NZ_CP043062.1|WP_010928338.1|2477125_2478103_+|hypothetical-protein
MALTGTRTTIAAMLIVIPGALPAAAVAPELARLLPQHAPTLHGWLQAASARVQAFDAARQGCTPFEGWQLEQAGYQPQPGLPLGAGLGPLRAAGGTPGQPVWLADLAHLMLGADQAALLDPALLDLRADESAQLFEAAAPLFADSGFGATPIDAARWRLTLPAGMAPQTASPAAVAGQRLRAWWTQDVAMRPWRRLLNEIQMVWYEHPVNEARAARGAAPINALWLYGGATPWPAGAPAPARVCDELAAAQRAGDWAAWLDALAVLDAAQLAPLAGPHGRPVQPLQLLLLGDDRRAALTLKPRAGLARWLPAPKHNWNAWWSRPV
>NZ_CP043062.1|WP_033446709.1|2478084_2479785_+|single-stranded-DNA-specific-exonuclease-RecJ
MVSPRLIIRTADLQACQHLEAAGIHPLLSRLWAARGVIHPEQTRMAWPALLPPDRLTHSAHAAAVLADAIEQGKRLLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRHRRGKPDIIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPEALAIVNPNQPGCGFGSKHLAGVGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVKLDANNRLLVTQGLQRMRAGRMQPGVRALFAVAGREPRTASGFDLGFALGPRINAAGRLADMSLGIACLTTDDEAQALEMARELDNINRERRTIEAEMRDQALAAMEAPDAAAGATVCVFDPGWHQGVVGLVASRLKEKFWRPTLAFAPAGEDELRGSGRSIPDVHLRDALDLVSKRHPGLIRKFGGHAMAAGLTLGSGDFAAFAPAFDAAVRELTGRDRFEPLLETDGSLESGYANAEVAGLLQQQVWGAGFAAPLFLDEFTVRSQRLVGGKHLKLALERGHQRFDAIWFGHDQSLPERIQAAYRLEQNIWNGMVSVQLVIEHAA
>NZ_CP043062.1|WP_010928336.1|2479887_2480992_+|peptide-chain-release-factor-2
MEAERQNQLVARLEDYAEREQALRRYLDYDAKSERLQVVNAELEDPAIWNDPKHAQDLGREKKSLEDVVETLTELGSGLADSCELVELALADSDDATLEAIEHDVDRFQEKLETLEFRRMFANPADPLNCFVDIQAGAGGTEAQDWASMLLRQYLKYAERKGFKAEILEESEGDVAGLKSATIKIEGEYAFGYLRTETGVHRLVRKSPFDSSGGRHTSFASVFVYPEVDESFEVEVNPADLRIDTYRASGAGGQHINKTDSAVRITHAPSGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMRNRMTEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQGV
>NZ_CP043062.1|WP_010926447.1|2481021_2481777_+|SDR-family-oxidoreductase
MTDTVAILTGASRGLGAALARGLLAPGTRLITLARRADPDLEAAARTRGASLEQVQVDLSDPAAAGAAAKRLCAALPRDARRYLLINNAGTVSPVAQAAGLTDGAAIAGALNLNVTAVVLLTARFVAALQGLPADRRVLNISSGAGRNPNAGWGVYCAAKAALDMYSRVLKQEQGQDGVRVVALAPGIVDTDMQGAIRASDPADFPALERFREFHATGKLSAPADVAARILAYLDRDDFGTTEIDDIRNYQ

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Crispr_ID: NZ_CP043062_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043062_3

2769580-2769653

Orphan

Consensus_repeat	Method
GGCGCCTGTCCCGGCGGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043062_3

>merge|NZ_CP043062|3|2769580-2769653|CRISPRCasFinder
GGCGCCTGTCCCGGCGGGGACAGATACCGTCTTGGCAGGCCAGCGGGACGGGGTGCCTGTCCCGGCGGGGACAG

>NZ_CP043062|3|3|2769580-2769653|CRISPRCasFinder
GGCGCCTGTCCCGGCGGGGACAG	ATACCGTCTTGGCAGGCCAGCGGGACGG
GGTGCCTGTCCCGGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043062.1\|WP_010928199.1\|2766185_2767622_+\|dethiobiotin-synthase	unknown	unknown	gnl\|CDD\|379223
NZ_CP043062.1\|WP_003810348.1\|2776091_2777153_-\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|235417
NZ_CP043062.1\|WP_041937169.1\|2760176_2761664_-\|cytochrome-c-oxidase,-cbb3-type-subunit-I	unknown	unknown	gnl\|CDD\|237726
NZ_CP043062.1\|WP_003810383.1\|2759503_2760166_-\|cytochrome-c-oxidase,-cbb3-type-subunit-II	unknown	unknown	gnl\|CDD\|237725
NZ_CP043062.1\|WP_003810367.1\|2767609_2767969_+\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|377131
NZ_CP043062.1\|WP_010928201.1\|2764345_2765539_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|273303
NZ_CP043062.1\|WP_003810362.1\|2769801_2771124_-\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893
NZ_CP043062.1\|WP_010928202.1\|2762967_2764242_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|235656
NZ_CP043062.1\|WP_010926792.1\|2767961_2768705_+\|LrgB-family-protein	unknown	unknown	gnl\|CDD\|377236
NZ_CP043062.1\|WP_003810379.1\|2761788_2761932_-\|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS	unknown	unknown	gnl\|CDD\|377073
NZ_CP043062.1\|WP_033449735.1\|2774299_2776129_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP043062.1\|WP_003810356.1\|2773687_2774260_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP043062.1\|WP_003810344.1\|2777737_2778484_-\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|235380
NZ_CP043062.1\|WP_010928197.1\|2771442_2772264_+\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|236986
NZ_CP043062.1\|WP_003810342.1\|2778480_2779980_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|182103
NZ_CP043062.1\|WP_041937166.1\|2783254_2784499_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|184990
NZ_CP043062.1\|WP_041937168.1\|2768715_2769426_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043062.1\|WP_076879807.1\|2772270_2773524_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP043062.1\|WP_010928200.1\|2765535_2766189_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|273783
NZ_CP043062.1\|WP_010928193.1\|2777191_2777653_-\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610

Protein	Function_ID	Function_description	E-value
NZ_CP043062.1\|WP_010928199.1\|2766185_2767622_+\|dethiobiotin-synthase	gnl\|CDD\|379223	pfam13500, AAA_26, AAA domain. This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif.	8.71449e-67
NZ_CP043062.1\|WP_003810348.1\|2776091_2777153_-\|beta-N-acetylhexosaminidase	gnl\|CDD\|235417	PRK05337, PRK05337, beta-hexosaminidase; Provisional.	0
NZ_CP043062.1\|WP_041937169.1\|2760176_2761664_-\|cytochrome-c-oxidase,-cbb3-type-subunit-I	gnl\|CDD\|237726	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional.	0
NZ_CP043062.1\|WP_003810383.1\|2759503_2760166_-\|cytochrome-c-oxidase,-cbb3-type-subunit-II	gnl\|CDD\|237725	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional.	1.50334e-135
NZ_CP043062.1\|WP_003810367.1\|2767609_2767969_+\|CidA/LrgA-family-protein	gnl\|CDD\|377131	pfam03788, LrgA, LrgA family. This family is uncharacterized. It contains the protein LrgA that has been hypothesized to export murein hydrolases.	2.10855e-25
NZ_CP043062.1\|WP_010928201.1\|2764345_2765539_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|273303	TIGR00858, Putative_8-amino-7-oxononanoate_synthase, 8-amino-7-oxononanoate synthase. 7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	6.06104e-142
NZ_CP043062.1\|WP_003810362.1\|2769801_2771124_-\|isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0
NZ_CP043062.1\|WP_010928202.1\|2762967_2764242_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|235656	PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional.	0
NZ_CP043062.1\|WP_010926792.1\|2767961_2768705_+\|LrgB-family-protein	gnl\|CDD\|377236	pfam04172, LrgB, LrgB-like family. The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control of murein hydrolase activity and penicillin tolerance.	3.62626e-69
NZ_CP043062.1\|WP_003810379.1\|2761788_2761932_-\|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS	gnl\|CDD\|377073	pfam03597, FixS, Cytochrome oxidase maturation protein cbb3-type.	1.64467e-12
NZ_CP043062.1\|WP_033449735.1\|2774299_2776129_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP043062.1\|WP_003810356.1\|2773687_2774260_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	3.46977e-48
NZ_CP043062.1\|WP_003810344.1\|2777737_2778484_-\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|235380	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional.	5.79242e-145
NZ_CP043062.1\|WP_010928197.1\|2771442_2772264_+\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	0
NZ_CP043062.1\|WP_003810342.1\|2778480_2779980_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	7.76589e-112
NZ_CP043062.1\|WP_041937166.1\|2783254_2784499_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|184990	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA.	5.40882e-99
NZ_CP043062.1\|WP_076879807.1\|2772270_2773524_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.28327e-25
NZ_CP043062.1\|WP_010928200.1\|2765535_2766189_+\|alpha/beta-hydrolase	gnl\|CDD\|273783	TIGR01738, Pimeloyl-_methyl_ester_esterase, pimelyl-[acyl-carrier protein] methyl ester esterase. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam00561). Members of this family are restricted to the Proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	4.76982e-07
NZ_CP043062.1\|WP_010928193.1\|2777191_2777653_-\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	7.85825e-51

>NZ_CP043062.1|WP_041937168.1|2768715_2769426_-|hypothetical-protein
MALVLARFGFGFCMLLAALVLLAAATLLATRLVGWAVRAFALERSQALASGVAIFILVALALWGCHAVGEVLYGAIGATALVGGAPHWLAGNSHVSAAALMGATTAAAMLAGGPAFWRWLRARRAAAAEQPAPRKAAPPKGAKPAARAAKAAAKTQIAPRGQRIPWLGWTAFFLLFIGAAVLAFAYIVAPIEAGASGLRLEHATRARPVYLAGLTLLGGGAFFLLAWLSRRRLPGD
>NZ_CP043062.1|WP_010926792.1|2767961_2768705_+|LrgB-family-protein
MPDFVNLWIYLSSTPLFGLTATLTVYLSAHAMYLRLGQVPLANPVLWSMVVLAAGLLAFGVPYPTYFAGAQFIHFLLGPAVVALAWPLWMRRAELRRRWARLLWAALFGGAVACASAVLLGWAVGLPRDIILSLAPKSVTAPVAMGLSETLGGIPALSAVFAALTGLVGALTGKYLFDLLGAVRGRQDWADRGFALGTVSHGIGAARAIQVNADAGAYAGLALGLQVILASLLIPVAFRLAAGLGGS
>NZ_CP043062.1|WP_003810367.1|2767609_2767969_+|CidA/LrgA-family-protein
MQALTGFTWLLALQALGEACSRLLHFPIPGPVTGMLLLLVALRWPLVREPVALAAQFLLSHLSLLFVPVGVGVMTHIALLAEYGLRMAAVIALSTLAGMAATYWALRVGRSAAPETDDA
>NZ_CP043062.1|WP_010928199.1|2766185_2767622_+|dethiobiotin-synthase
MSTRSTPTIGQRFDRAAARYETHAEVQRHAAEQLAERIAALPLPAEPRILEIGCGTGLLTRALARRLGRADWTITDIAPAMLAAQQAGPPPAGRVRHQLVDGEHPAGLPGGYDLICSSLAVQWFGDLDAGLARLAGLLAPGGLLAIATLAEHTFSEWRAAHQAHGLHAATPAYPPAERIGRTLAGLRGGITREAYRQRHPDALHFVRSLKAIGASAPAAGHAPLSPAAFRRVLAQFDRQGNHVTYDLAYGLWRKQAPGVFVTGTDTGVGKTLVSAILARAWRAHYWKPLQTGVAEEPGDTETVAALAGLEPARLHPPAHVLQAPLSPWAAAPLEGVTLDAAAIAPPQVDGPLVVEGAGGLYVPIDERHMMIDLIARLGMPVVLAARSGLGTINHTLLSLHALRERRLPVLGVIMLGEPSAGNRHAIEHFGGVPVLAQIPRLARVDAEAVEAWAARIPPLADCLARRWPDTQETPACRP
>NZ_CP043062.1|WP_010928200.1|2765535_2766189_+|alpha/beta-hydrolase
MSAPRPLLRFEHGWAHDAGVWAPLRAALADWPQQAADAGYFGPAVEPPPDGAPVVAIGHSLGFLKILQSPAPGCIAYIAINGFARFAGGADYPPGVAPRLLERMLARLELDPAAVVDDFRRRAGSAPHAGTPRPEPLRHDLRRLREADERQALAASRLPLLALAGTADPIVAPALTRAQFGACAGLRWRDGGGHLLPTSDPDWCAGRIRAFLAGLPA
>NZ_CP043062.1|WP_010928201.1|2764345_2765539_+|8-amino-7-oxononanoate-synthase
MSKLDSLFTAALEQAAQRQVRRRLRRATAAPPGRLALDGRTLVNFSSNDYLGLARHPLLAERASLWATRHGAGAQASRLVCGNLDLHEQVEAKLARLKGTEAALLLASGWQANAAVLPALFKAAAAQGEPQVYTDRLNHASLHHGCQAAGVRQIRFRHNDLAHLEHLLAERAGAPGARFIVTESVFSMDGDRADVPALAALAARHHTFLYLDEAHATGVLGPRGMGLAGLAPGGVDLAMGTFSKGLGSFGAYVAGSRALCDYLVNACSGFIYTTALPPAVLGAIDAALDLVPRLDQARAALLGHGERLRASLAAQGIDCGASSTQIVPAIVGDAGHALALAAELERRGLLAVAIRPPTVPAGTSRLRIALSAAHGETELDQLIEALAAGWRAVRQAA
>NZ_CP043062.1|WP_010928202.1|2762967_2764242_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MSDTTPAWMAQGYPHIWLPYAQMKTAAPPLPVVRSHGSLLELADGRTLIDGVASWWTACHGYNHPHIAQAVREQLDRMPHVMFGGLAHEPALNLASRLSALLGPGLERVFYTDSGSVAVEVAMKMAVQFWLNQGERGRTRFVAFRGGYHGDTFGTMAVCDPDEGMHAMFRGLLPEHDVLALPRDEAALAALQAHLERHAGRIAGMLVEPLVQGAGGMLLHDPQVLARLRELADRYGILLIFDEIFTGFGRTGTMFAFEQAGVRPDIITLSKALTGGTLPLAATVASARVFEGFWSDDPGHALMHGPTFMGCALACAAANASLDLFEREPRLRQVAALEQALRAGLEPCRDLPWVRDVRVLGAIGVIELDGIGARDDLRRRLVDAGVWVRPFGNIVYLTPAFTIAEDELQALLAAVRQVVAERRP
>NZ_CP043062.1|WP_003810379.1|2761788_2761932_-|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS
MSILYLLLPLSLAFVLAIGVALWWAVFSGQYDDTEDQGAAILRDNDN
>NZ_CP043062.1|WP_041937169.1|2760176_2761664_-|cytochrome-c-oxidase,-cbb3-type-subunit-I
MNDCSAIASKAETFNYKVVRQFAIMTVVWGIVGMAVGVLIAAQLIWPQLNFDTAWLSYGRLRPLHTNAVIFAFGGSALFATSYYVVQRTCQARLFCDKLAAFTFWGWQAVIVAAAITLPMGFTSSKEYAELEWPIDILITLVWVAYAVVFFGTIVKRRSRHIYVANWFFGSYILTIAILHIFNNIEMPVTLWKSYSAYAGVQDAMVQWWYGHNAVGFFLTTSFLGMMYYFVPKQAGRPIYSYRLSIVHFWALAFTYMWAGPHHLLYTSLPDWTQSLGMTFSLILLAPSWGGMINGIMTLQGAWHKLRTDPILKFLVTALSFYGMSTFEGSMMSIRTVNSLSHYTDWTIGHVHSGALGWVAMITFGSLYYLIPRLYGRQQMHSVRAMELHFWVATIGVVLYIAAMWIAGVQQGLMWRDTAADGTLVYSFVEELKTRVPYYVIRLAGGILYLGGVFVMAWNVWMTVRGARAVNPAIPLENDNRATAPAGVPAAVPAV
>NZ_CP043062.1|WP_003810383.1|2759503_2760166_-|cytochrome-c-oxidase,-cbb3-type-subunit-II
MAQKQHGFFSHQTLEKNIGLMIIASILVVSVAGLVQIIPLFFQHSTTQAMPGVEPYEPLQLMGRDVYIREGCVGCHSQQVRTLQAEVQRYGPYSVAGESVFDHPFLWGSKRTGPDLARVGERYSDEWHRIHLRDPRAVVPESNMPAYPWLQHADLTGQNVAQRMQALRRLGVPYTDEAIAAAPAAIAGKTEEDALVAYLQALGVGARRGAASEPQRAAGG
>NZ_CP043062.1|WP_003810362.1|2769801_2771124_-|isocitrate-lyase
MSNRETEIRNLQKDWAENTRWQGIKRAYSAEDVIRLRGSVAVEHSLARRGATRLWDSLHSEPFVNSLGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPQVVRRINNALARCDQIQWMEGKNPGDQDYIDYYAPIVADAEAGFGGVLNAFELMKAMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTREAVSKLVSARLAADVMGTPTILLARTDADAADLVTSDVDENDRPFITGERTVEGFFRTRAGLDQAISRGLAYAPYADLIWCETSTPNLEYARKFAEAVHRQFPGKLLAYNCSPSFNWKKNLDDGTIAKFQRELGAMGYKFQFITLAGFHALNYGMFELAHGYARRQMSAFVELQQKEFAAAELGFTAVKHQREVGTGYFDAVTQTIEGGQSSTTALTGSTEEAQFEHGGQAVKAA
>NZ_CP043062.1|WP_010928197.1|2771442_2772264_+|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MSLSNAPLGQHVAYPSQYDPGLLFPIPRATNRASLQLGATLPFTGVDLWNAYELSWLDARGKPRVAMATFSFPADSPNIVESKSFKLYLNSFNQTRLPNAQALRDRLERDLAAAAGAPVGLKFISPQRFGELNMAELDGIYIDKLDIEIDTYEPAPQLLQCAPGDEVEETLATRLLKSNCPVTGQPDWASLQVRYRGRPIDRAALLKYVVSFRQHAEFHEHCVERIFGDIMRACQPRQLTVYARYTRRGGLDINPWRSNFESAPPADVRTARQ
>NZ_CP043062.1|WP_076879807.1|2772270_2773524_-|MFS-transporter
MAMNSETAVLDSPALRRRDWQIILLIGVAHSSSHFFQLVLPSLYVSLGTEFGLDFARLGLLVSVFYVVSGLGQASSGFVVDRIGARPVLWFGLACFVLSAVLIGAVSGYAMLMLAAAIGGIGNSVFHPADYSIINHRVSPPRLGHAFSLHGLTGNLGWALTPVFITTITLLASWRVAAFSAAALVAVVLLMTVIGRDLLGGAAPAEAGGKSAARPAAQESVWQTLAALLARPALWGAFLFFACTSIALSSVQNYTIPLLGQLYDLSKVAASSALSGYMVASALGMAAGGFLVSANPRTELTVTAALIMAGLTLVVLAMGWVPAGWAALVVGLAGFCSGVAAPSRDMLIRRVTPKGATGSVYGLVYSGMDVGSALGPLGFGLLLDAGMAHGPWVGAGVAFAAAALLAQWIAMQARRTA
>NZ_CP043062.1|WP_003810356.1|2773687_2774260_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MPINVPIFLTWLRIAMIPLVVGLFYLPESWMSVPMRDTFAAWAFIIAALTDWFDGWLARRWNQTSAFGAFLDPVADKLMVCAALIVLLDLSRVDAFISLIIIGREITISALREWMAKIGASASVAVHRLGKFKTAAQMVAIPCLLYDQPLFGLSSRLIGDVLIVVAAVLTVWSMLYYLQRAWPAIREKSQ
>NZ_CP043062.1|WP_033449735.1|2774299_2776129_-|excinuclease-ABC-subunit-UvrC
MPDDFNLKSFLADLPHLPGVYRHLDAAGEVMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVASVDVTVTRSEAEALLLENNLIKSLRPRYNILFRDDKSYPYLLITGHAWPRIAYYRGATSKRGQYFGPYPNSWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGVIEAGDYAHDVQRAVRFLNGEAREVMDEIEARMLQASTELRFEEAAVLRDQMGSLSKVLHQQTMENVGGDDTDVIAVASAGGKICVNLAMVRGGRHLGDKPFFPTHAEGEQPAQVLEAFVAQHYADGAMPPVLVCSHALPDSGLVGLLAEQGGTRAARVLTRPQGVRRSWLEQAQKNAEMALARALTESGARAGRTLALAEALDLDTDEESLDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYNIVGITPGDDYAAMRQVLTRRFGKVADGEAPMPGLVLIDGGKGQVEVARQVFVELGLDIQSLVGVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRDEAHRFAITGMRARRAKTRNVSRLEEIEGIGARRRQRLLARFGGLSGVSSASIEDLASVEGISQELAVRIYDALHG
>NZ_CP043062.1|WP_003810348.1|2776091_2777153_-|beta-N-acetylhexosaminidase
MSSKKKTKPVLPPGPVMVDVAGTTLTKDEKRRLRNPLVGGVILFARNFTDRRQLCALTRAIHKARKEPLLIAVDHEGGRVQRFRDDGFTALPPMQELGKLWDRDPLAAMRLATEAGYVLAAELRACGVDLSFTPVLDLDYGVSKVIGNRAFHHDARVVTMLSRALAQGLALAGMAACGKHFPGHGFVGADSHHEIPVDPRPLARILKDDAAPYAWLGDLVMPAVMPAHVIYPKVDAQPAGFSRRWVSEILRERLGYDGVVFSDDLTMEGASVAGDILARAEAALGAGCDMVLVCNRPDLADELLDRLQVQHPAASVERIRRLMPRFAAPDWDTLQNDSRYQHARRLQSQIVSG
>NZ_CP043062.1|WP_010928193.1|2777191_2777653_-|holo-ACP-synthase
MSSVSAAGATPPASPGCIAGIGMDLLRIERIERALARHGDRFAQKILGPEELAKFHARRRRDPARGVRFLATRFAAKEAFSKAIGLGMRMPMSWRRVQTLNALGGRPVLVIGAELADWFDARFGAAHVSITDESDMAAAYVIVERKPAPDGRP
>NZ_CP043062.1|WP_003810344.1|2777737_2778484_-|pyridoxine-5'-phosphate-synthase
MIELGVNIDHVATLRQQRHTAYPDPVQAALRAEDAGADLITLHLREDRRHIQDADVYAIRPLLRTRMNLECAVTPEMLEIACAVKPSDVCLVPEKRTELTTEGGLDVAGAQAAVTDAVQLLAEAGIRVSLFIDPDARQIEAAARAGAPVIELHTGAYAEARDDAAVQAELARVRAAVAEGLRHGLRVNAGHGLHYGNVQAVAALDGIAELNIGHAIVAQSIFDGWDKAVRDMKALMVQARLAAVRGHA
>NZ_CP043062.1|WP_003810342.1|2778480_2779980_-|efflux-transporter-outer-membrane-subunit
MMAVMYKRSALSVLVAAALAGCSLAPDYKRPEAPVQANWPDQPKVQYGAYASPTSLGEQPAAAVAPQGATPADEIGWREFFRDARLQKLIELALVNNRDLRVAVQRVEEARAQYGVQRGAQWPSIGAGIQGQRQHLPPDMRPLGPDSTSISSQYQAGLGLTTFEIDLFGRLRNLSEAAYQQYLSTEQAQRSVHITLVGAVAQSYFNLRAAEVQLELTQKTLASRQESYNLVKTRFDGGVASELDLNQSKSLLDSASADLAALARARAQAANALVVLVGLPGLPEDLPAPAVFGRDQLLASVPAGLPSDLLTRRPDILAAENQLKAANANIGAARAAFFPTISLTGLLGVASPSLDNLFKGGQGYWSFSPSITTPLFAGGSIREGLNLAKARDNIAVAQYEQSIQQAFREVSDALAGEATYSAQLDAQRALQVAAGRTLELSNLRYNNGIDSYLQVQTAQVDFFNAQLGLVQTGLAALINRVELYKALGGGWQESTTKQP
>NZ_CP043062.1|WP_041937166.1|2783254_2784499_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MRFSPQRVSAFGLVATLSVLLAACGEKPQFNPGMPQVSVITVQPQRAAVVSELPGRVDAVRDAQIRARVTGIVQKIAFEQGGDVQADQLLFKIDPAPYQAAYDQAAAQLKQAQADLFSAKLLAERYAPLVKANAVSKQEYDNAVARYRQADASVAAAKANLTNAKINLGYTDVTSPIKGRIGKPLVTEGALVEATSATQMATVQQLDPIYVDFTQSTADLAALRRAFAAGKLQQVGKDAVKVQVVLEDGSIYPEAGKLLFTGVTVDPTTGQVNLRAEVPNPDNILLPGMYVRVRVDQGVDDKALLVPQQALQRTADGMQSLMLVKDNKVEQVPVTTGSVIHNQWVINSGLAAGDVVVVEGFQKIRPGALVQASPWNKGGAAPAGQQPAPGQQAPAQQPAKQEPAKQAPAAGQQS

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Crispr_ID: NZ_CP043062_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043062_4

3081318-3081392

Orphan

Consensus_repeat	Method
TGCCTGTCCCCGCGGGGACAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043062_4

>merge|NZ_CP043062|4|3081318-3081392|CRISPRCasFinder
TGCCTGTCCCCGCGGGGACAGGCGCCCCGCACCCTGCGCCACGCCCATTCGGTGCCTGTCCCTGCGGGGACAGGC

>NZ_CP043062|4|4|3081318-3081392|CRISPRCasFinder
TGCCTGTCCCCGCGGGGACAGGC	GCCCCGCACCCTGCGCCACGCCCATTCGG
TGCCTGTCCCTGCGGGGACAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043062.1\|WP_010928061.1\|3073903_3074614_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|180794
NZ_CP043062.1\|WP_010928058.1\|3081404_3082037_-\|protein-phosphatase-CheZ	unknown	unknown	gnl\|CDD\|236868
NZ_CP043062.1\|WP_003811922.1\|3088784_3089165_-\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NZ_CP043062.1\|WP_010928060.1\|3075047_3075530_+\|flagellar-protein-FlgN	unknown	unknown	gnl\|CDD\|377465
NZ_CP043062.1\|WP_003811891.1\|3072880_3073300_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
NZ_CP043062.1\|WP_003811898.1\|3074740_3075031_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NZ_CP043062.1\|WP_003811927.1\|3090139_3091015_-\|flagellar-motor-stator-protein-MotA	unknown	unknown	gnl\|CDD\|181655
NZ_CP043062.1\|WP_010928059.1\|3080023_3081178_-\|flagellar-type-III-secretion-system-protein-FlhB	unknown	unknown	gnl\|CDD\|235569
NZ_CP043062.1\|WP_003817154.1\|3089179_3090127_-\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|236365
NZ_CP043062.1\|WP_003811915.1\|3083536_3084397_-\|chemotaxis-protein-CheR	unknown	unknown	gnl\|CDD\|236725
NZ_CP043062.1\|WP_010928056.1\|3082487_3083540_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NZ_CP043062.1\|WP_010928053.1\|3086700_3088758_-\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|236712
NZ_CP043062.1\|WP_003811885.1\|3069838_3070603_-\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
NZ_CP043062.1\|WP_010928055.1\|3084405_3086112_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP043062.1\|WP_004567196.1\|3072128_3072833_-\|flagellar-basal-body-rod-modification-protein-FlgD	unknown	unknown	gnl\|CDD\|183638
NZ_CP043062.1\|WP_033460279.1\|3068320_3069010_-\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|139164
NZ_CP043062.1\|WP_010928062.1\|3070641_3072063_-\|flagellar-hook-basal-body-complex-protein	unknown	unknown	gnl\|CDD\|183641
NZ_CP043062.1\|WP_003811919.1\|3086185_3086686_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|182587
NZ_CP043062.1\|WP_003811894.1\|3073312_3073720_-\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|180196
NZ_CP043062.1\|WP_010928057.1\|3082045_3082435_-\|chemotaxis-protein-CheY	unknown	unknown	gnl\|CDD\|170568

Protein	Function_ID	Function_description	E-value
NZ_CP043062.1\|WP_010928061.1\|3073903_3074614_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|180794	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA.	2.99198e-82
NZ_CP043062.1\|WP_010928058.1\|3081404_3082037_-\|protein-phosphatase-CheZ	gnl\|CDD\|236868	PRK11166, PRK11166, chemotaxis regulator CheZ; Provisional.	8.42025e-119
NZ_CP043062.1\|WP_003811922.1\|3088784_3089165_-\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.58059e-44
NZ_CP043062.1\|WP_010928060.1\|3075047_3075530_+\|flagellar-protein-FlgN	gnl\|CDD\|377465	pfam05130, FlgN, FlgN protein. This family includes the FlgN protein and export chaperone involved in flagellar synthesis.	5.22082e-22
NZ_CP043062.1\|WP_003811891.1\|3072880_3073300_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	7.50281e-77
NZ_CP043062.1\|WP_003811898.1\|3074740_3075031_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	2.0327e-15
NZ_CP043062.1\|WP_003811927.1\|3090139_3091015_-\|flagellar-motor-stator-protein-MotA	gnl\|CDD\|181655	PRK09110, PRK09110, flagellar motor stator protein MotA.	1.34135e-169
NZ_CP043062.1\|WP_010928059.1\|3080023_3081178_-\|flagellar-type-III-secretion-system-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	0
NZ_CP043062.1\|WP_003817154.1\|3089179_3090127_-\|flagellar-motor-protein-MotB	gnl\|CDD\|236365	PRK09041, motB, motility protein MotB.	0
NZ_CP043062.1\|WP_003811915.1\|3083536_3084397_-\|chemotaxis-protein-CheR	gnl\|CDD\|236725	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR.	7.35944e-146
NZ_CP043062.1\|WP_010928056.1\|3082487_3083540_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NZ_CP043062.1\|WP_010928053.1\|3086700_3088758_-\|chemotaxis-protein-CheA	gnl\|CDD\|236712	PRK10547, PRK10547, chemotaxis protein CheA; Provisional.	0
NZ_CP043062.1\|WP_003811885.1\|3069838_3070603_-\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	3.99966e-117
NZ_CP043062.1\|WP_010928055.1\|3084405_3086112_-\|HAMP-domain-containing-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	3.93344e-130
NZ_CP043062.1\|WP_004567196.1\|3072128_3072833_-\|flagellar-basal-body-rod-modification-protein-FlgD	gnl\|CDD\|183638	PRK12633, flgD, flagellar basal body rod modification protein; Provisional.	1.48092e-136
NZ_CP043062.1\|WP_033460279.1\|3068320_3069010_-\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|139164	PRK12700, flgH, flagellar basal body L-ring protein; Reviewed.	1.45542e-150
NZ_CP043062.1\|WP_010928062.1\|3070641_3072063_-\|flagellar-hook-basal-body-complex-protein	gnl\|CDD\|183641	PRK12637, flgE, flagellar hook protein FlgE; Provisional.	0
NZ_CP043062.1\|WP_003811919.1\|3086185_3086686_-\|chemotaxis-protein-CheW	gnl\|CDD\|182587	PRK10612, PRK10612, chemotaxis protein CheW.	9.03634e-84
NZ_CP043062.1\|WP_003811894.1\|3073312_3073720_-\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|180196	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed.	1.51778e-66
NZ_CP043062.1\|WP_010928057.1\|3082045_3082435_-\|chemotaxis-protein-CheY	gnl\|CDD\|170568	PRK10610, PRK10610, chemotaxis protein CheY.	5.00518e-68

>NZ_CP043062.1|WP_010928059.1|3080023_3081178_-|flagellar-type-III-secretion-system-protein-FlhB
MAEESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVVGVWLSGSMLYQGLTGVLRRGLGFEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFSTKPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVAPSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKESEGDPHVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIAARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQLRSWRPGLGREPQAPTALAVPAELDPHSPPATQGA
>NZ_CP043062.1|WP_010928060.1|3075047_3075530_+|flagellar-protein-FlgN
MNSAALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSDAGLASGPAGTDAAAAAHPELGPLWQALQANAAQAREHNQRNGTLIAVNLRHTQESLDALRQAAGTGAAATYDAQGRGKRGYSSAASGRAIVAT
>NZ_CP043062.1|WP_003811898.1|3074740_3075031_+|flagellar-biosynthesis-anti-sigma-factor-FlgM
MKIQSSTSHPVGPNAVGARAEHAVAQAYGGGAQAGSGSAQVALSPASRQLLAQEGGSDIDVERVAAIRAAIASGQLRIDPTRIADSLIASARDLLK
>NZ_CP043062.1|WP_010928061.1|3073903_3074614_+|flagellar-basal-body-P-ring-formation-protein-FlgA
MKSPRSRSIARLAALAILAGAMPRAAAEPPAQDPAELAAAAESYLRQQLAALPGEPSITLDPLRTDRLDACEALTPFMPSGMRVRARMTVGLRCVAPRTWTVYAQATVSVPGQYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDAAAILGMRPAHRIAAGQPIKGAGLRSAESVSRGQSVRITARGNGFVVSSEGQALDNAPPSATVQVRTASGQVVSGIVQAAGLVEIQL
>NZ_CP043062.1|WP_003811894.1|3073312_3073720_-|flagellar-basal-body-rod-protein-FlgB
MLDRLNEDFRFFQQSIALRAQRQEVLSSNIANADTPNYKARDFDFKAAMQGALEQRMRLPDTNLALTSARHIPGQATTPSPAELMYRLPYQPSLDGNTVDMDSERVRFADNTLHYQSSLQVLSGRIRSLMSAIQE
>NZ_CP043062.1|WP_003811891.1|3072880_3073300_-|flagellar-basal-body-rod-protein-FlgC
MSLLSIFEIAGSALSAQSQRMNVSASNMANADSVAGPDGQPYRARQVVFQVNPPPGQAFGQEIGGVRVAGVVEDQSPFKKIYDPKHPMADAQGYVNMPNVDPVAETVNMIAASRSYQANVEVLNTAKQLMLKTLTIGQS
>NZ_CP043062.1|WP_004567196.1|3072128_3072833_-|flagellar-basal-body-rod-modification-protein-FlgD
MTTVNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPGDKVSLGTDPNDPAQRGATPFGIDLQGDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSASDADANPVKTEALTYGQVKSVAYSTNGLRLDLGLAGQISMLDVRKVIGASGSA
>NZ_CP043062.1|WP_010928062.1|3070641_3072063_-|flagellar-hook-basal-body-complex-protein
MGFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQRFTVGNISTTGGEYDMAIDGGKGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRLTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNANAKVIDPNDTPADDGAVELDGTTYRFTNASGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLASQPGYQPYKPLVAGIPFDPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYVLDGQPMQVNGGASQTLNFDTAGNLLNQPPTAQVTFANPGGNAAPADPLAITVSYNGVTQYGSDFAPKVVQNGYSSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVGNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNMR
>NZ_CP043062.1|WP_003811885.1|3069838_3070603_-|flagellar-basal-body-rod-protein-FlgF
MDRIIYTAMNGAARIAEHQTVLGNNMANVNTPGFREQIALYRSVPMADGTSLPTRVSTVASTPGNNFEMGNMMTTGRELDVALAGPGWFALQTPQGEAYTRAGALQVGVNGLLQTATGQPVLSDQNAVIEVPDQASLTIASDGTVTAIGAGDPPNNILNLGRLKMVNPPPQQLVHGDDGVFRMPQQPGGQPAAPLPADPSQRLLSGVLEGSNASPMGAMVGMIQNARRFEMQMQVIREADKNAERANGILAAAS
>NZ_CP043062.1|WP_033460279.1|3068320_3069010_-|flagellar-basal-body-L-ring-protein-FlgH
MLKTVLRLPVCAALLALAAGCAMIPPEPVVTGPLTAPPPPPPQPSARPNGSIYQPSAYGNYPLFEDRRPRNVGDIVTIVLEEKTNAAKGVATNTSRDGSATLGVAAAPRFMDGVINDKLDTDISGGNTANGTGKSSANNTFTGTITTTVIGVLPNGNLQIAGEKQIAINRGSEYVRFSGVVDPRSITGSNTVSSTRVADARIEYRSKGVMDEVQTMGWLQRFFLIASPF
>NZ_CP043062.1|WP_010928058.1|3081404_3082037_-|protein-phosphatase-CheZ
MNATDTGMQADPTDLIQRIASLTRMLRDSMRELGLDQAIKDAAEAIPDARDRLRYLAQMTEQAANRVLNAIEAAGPIQDGMARGAQALDERWQQWYDQPLELPQARALVQDTRAFLAAVPQHTQQTQAKLMEIVMAQDFQDLTGQVIMRMMDVVGAIERELLQVLLDNVPQERRDEANSLLNGPQVNPGGKADVVTSQDQVDDLLASLGF
>NZ_CP043062.1|WP_010928057.1|3082045_3082435_-|chemotaxis-protein-CheY
MVDKGMKILVVDDFPTMRRIIRNLLKELGFENVDEAEDGAIGLEKLRNGAFQFVVSDWNMPNLDGLEMLKQIRADAALKSLPVLMVTAEAKKENIVAAAQAGANGYVVKAFTAATLEEKLNKIFEKLAG
>NZ_CP043062.1|WP_010928056.1|3082487_3083540_-|chemotaxis-response-regulator-protein-glutamate-methylesterase
MKKIKVLCVDDSALVRGLMTEIINSHPDMEVVATAPDPLVARELIKKHNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTERGGEITLRALELGAIDFVTKPKLGIRDGLIEYSEVIADKIRAASRARLRAPAPAGHAAPLRLRSPFASSEKLVIVGASTGGTEAIREVLQPLPADSPAILITQHMPAGFTRSFAQRLDALCAVTVREASDGERVLPGHVYLAPGGETHMRLGRSGANYVIGLQASEPVNRHRPSVDVLFHSAAEAAGGNAIGVILTGMGKDGAAGLLAMKRAGARTMAQDEASCVVFGMPREAIALGAADEVMPLADISERILTRLGDRGHRV
>NZ_CP043062.1|WP_003811915.1|3083536_3084397_-|chemotaxis-protein-CheR
MATAMTTPAFSAERQFEFRDADFARVRQMIYARAGISLGAHKREMVYSRLARRLRALGQQEFRVYLDGLENEPAAPEWEDFVNALTTNLTAFFRESHHFPILADFARQRGGPVSVWCCAASTGEEPYSIAMTLVESLGARAQASQLLATDIDTNCLQRARAGVYPYERVAKLDPARLKRFFMRGRGANEGQVKVRAELADMVRFETLNLLAPHWPINEKFDAIFCRNVMIYFDKPTQARILRRFVPLLKPGGLLFAGHSENFTYISRDFRLRGQTVYEQASGELPV
>NZ_CP043062.1|WP_010928055.1|3084405_3086112_-|HAMP-domain-containing-protein
MRKFLANLSIRGSLLGVLAFFSFMLVVGAALGVLSLRVSNDTLQGVKQTQDVADAMDRVVNSYKDAFNGLGRAAASHYGAIVSAIGQPVQVEQGLGSEAAGLLQRAKASLNRAETEYEYYKGLARPASAADSLKEVENAFEALVGQGLHPLAAALEKGDMAGYQSHAQNVLDALEGRFSGAIAAFDFWRASELLDAHEVAETRYRFVLAAVAAGGVLAALLVFSTYLFLRRRVLQPLREVGQHFDKIAAGDLTARVDVRNSNEIGQLFAGLKRMEESLTRTVAAVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEETAASMEQLASTVKQNADNARQANQLAGVASDVAERGGSAVSEVVATMQDISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKVLIEDSVGKVGTGSQQVERAGATMQEIVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQEQAQRLAEAVAVFRINAGEVIEVPAHQLGSRQAPGARETALAHDDALALGH
>NZ_CP043062.1|WP_003811919.1|3086185_3086686_-|chemotaxis-protein-CheW
MAAKPHTQATRAEDVGNEFLVFTLGEEEYGIDILKVQEIRGYDAATVTRIANVPSFIKGVTNLRGIIVPIVDLRIKFNLGSVEYNEQTVVIILNLDRRVVGIVVDGVSDVLMLNAAQVRPAPEFGATLSTEYLTGLGTVDERMLILVDIEKLMTSDEMALVEKVAS
>NZ_CP043062.1|WP_010928053.1|3086700_3088758_-|chemotaxis-protein-CheA
MSSGLDLSQFYETFFDEADELLAQMEQLLLELDVGAPDIEQLNAIFRAAHSIKGGAATFGCFQKLAGTTHLLENLLDAIRRGEMGLRADMVDIFLETKDVLKSQLDAYRASEEPEDAVFERICAVLRQLALEGGQAPAAAAPAPVAASEPGPEPEPAPQPAAASTAAGLPLRVRFSKVSDKDAQSLLEEMGNLGDVRASERAGQTLTVWVDTTCSPDDIEAVCCFIIDADQLEIAREAEPAHASAQAAVAAAPDAAATPAPVAAPAAAQAAEPARAARPSIAPAHADKESTSIRVGVEKVDQVINLVGELVITQAMLAQTASTLDPVLHDRLLNGMEQLERNARDLQEAVMSIRMMPMDYVFSRFPRLVRDIAGKMGKQIELQTYGRATELDKSLIERIIDPLTHLVRNSLDHGIETPDKRVAAGKEPVGQLVLSAQHNGGNIVIEVSDDGGGLSRERILRKAVAQGLTVNENSPDDEIWQLIFAPGFSTGDQVTDISGRGVGMDVVRRNIQDMGGHVQLSSVPGQGTTTRIVLPLTLAILDGMSVRVGEETFILPLNHVTESLQPQADQIYSVAGNERVMQVRGEYLPLVEMHRVFSVGQAQADPTQAIAVIMQAEERRFALLVDHLVGQHQVVVKNLESNYRKVPGISAATILGDGSVALIVDVFALARANREKWSQPEAILN
>NZ_CP043062.1|WP_003811922.1|3088784_3089165_-|response-regulator
MTARILVADDSATMRMIVQAALTGAGWQVVTASDGKQALELAQAQAVDLVVSDWNMPVMGGLDLIRGLRGQARYQDLPVLVLTTEDDGDSKAAARDLGVCGWLNKPLDPDVLVDLAAELLGVAPGA
>NZ_CP043062.1|WP_003817154.1|3089179_3090127_-|flagellar-motor-protein-MotB
MSTVNNHRVVIRRRKVRRGGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREELKGIAEYFRMPLRVALTGGPSSSAETSAIPGGGQDPLRSQGDVRRAEGNRVEAQPMGDAERRDRHRLERLKVRLENLIEESPVLKNFRPQLLIDMTTEGLRIQIVDNQNRPMFATGSADVQPYMRDILRELGPVLNDLPNKISIAGHTDASQYARGERAYSNWELSADRANASRQELVAGGMHEGKVLRIQGLASSMSLVKDDPFAAVNRRISLVVLNASTQRRIENENAAAADVNARDAQGVGAALAGQLAASGSDGGAR
>NZ_CP043062.1|WP_003811927.1|3090139_3091015_-|flagellar-motor-stator-protein-MotA
MLIVIGYAVVILAVVGSFIGLGGHLGALYQPFELTLIAGAAVGAFMAGNSRKSLGLVAKAIPEAFRSSPYSKDVYMELMALLYVLLNKARREGLMAIESHIEDPLSSPIFNEYPRIMKDAKLMEFITDYLRIMISGNMSSFEIETLMDEEIETYRHEREVPTHALQQVADALPAFGIVAAVLGVIKALAAVDQPPAILGDLISKAMVGTFLGVLLAYGFVAPMAARIERRTSESVKVLECIKVTLLASMNGYPPQLAVEFGRKVLFSAVRPSFGELEEHVRQAKSAATGRA

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Crispr_ID: NZ_CP043062_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043062_5

3766953-3767034

Orphan

Consensus_repeat	Method
CTGTCCCCGCCGGGACAGGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043062_5

>merge|NZ_CP043062|5|3766953-3767034|CRISPRCasFinder
CTGTCCCCGCCGGGACAGGCACCCGTCGTGCGCCATGAGCGCCACTGCCAAGACGGCGTCTGTCCCCGCCGGGACAGGCGCC

>NZ_CP043062|5|5|3766953-3767034|CRISPRCasFinder
CTGTCCCCGCCGGGACAGGCACC	CGTCGTGCGCCATGAGCGCCACTGCCAAGACGGCGT
CTGTCCCCGCCGGGACAGGCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043062.1\|WP_003821187.1\|3764100_3766851_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP043062.1\|WP_003821185.1\|3770291_3770672_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP043062.1\|WP_010929085.1\|3768275_3770201_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP043062.1\|WP_010929083.1\|3762801_3763356_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NZ_CP043062.1\|WP_003814085.1\|3771375_3771618_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043062.1\|WP_003814063.1\|3759827_3760190_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|225418
NZ_CP043062.1\|WP_010929082.1\|3760716_3761604_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP043062.1\|WP_003814083.1\|3770679_3771234_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237621
NZ_CP043062.1\|WP_065956704.1\|3756712_3757675_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340821
NZ_CP043062.1\|WP_010929086.1\|3771699_3772788_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NZ_CP043062.1\|WP_010929087.1\|3774879_3776541_+\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP043062.1\|WP_010929081.1\|3759351_3759777_+\|DUF1841-family-protein	unknown	unknown	gnl\|CDD\|370177
NZ_CP043062.1\|WP_010929084.1\|3767041_3768175_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NZ_CP043062.1\|WP_003814090.1\|3772845_3773850_-\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NZ_CP043062.1\|WP_003814092.1\|3773964_3774864_+\|NAD-kinase	unknown	unknown	gnl\|CDD\|179379
NZ_CP043062.1\|WP_003821189.1\|3761625_3762798_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226346
NZ_CP043062.1\|WP_003814072.1\|3763393_3763768_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043062.1\|WP_003814065.1\|3760202_3760556_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|225418
NZ_CP043062.1\|WP_010927279.1\|3776573_3777794_-\|ISL3-like-element-IS1001-family-transposase	unknown	unknown	gnl\|CDD\|225995
NZ_CP043062.1\|WP_003821191.1\|3757892_3759149_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180792

Protein	Function_ID	Function_description	E-value
NZ_CP043062.1\|WP_003821187.1\|3764100_3766851_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.06874e-64
NZ_CP043062.1\|WP_003821185.1\|3770291_3770672_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.07863e-05
NZ_CP043062.1\|WP_010929085.1\|3768275_3770201_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP043062.1\|WP_010929083.1\|3762801_3763356_-\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	1.00531e-60
NZ_CP043062.1\|WP_003814063.1\|3759827_3760190_-\|cytochrome-c	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	2.60442e-23
NZ_CP043062.1\|WP_010929082.1\|3760716_3761604_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.85673e-44
NZ_CP043062.1\|WP_003814083.1\|3770679_3771234_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237621	PRK14139, PRK14139, heat shock protein GrpE; Provisional.	1.18525e-78
NZ_CP043062.1\|WP_065956704.1\|3756712_3757675_-\|hypothetical-protein	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	3.67712e-14
NZ_CP043062.1\|WP_010929086.1\|3771699_3772788_-\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	7.84073e-159
NZ_CP043062.1\|WP_010929087.1\|3774879_3776541_+\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0
NZ_CP043062.1\|WP_010929081.1\|3759351_3759777_+\|DUF1841-family-protein	gnl\|CDD\|370177	pfam08897, DUF1841, Domain of unknown function (DUF1841). This family of proteins are functionally uncharacterized.	1.92899e-74
NZ_CP043062.1\|WP_010929084.1\|3767041_3768175_-\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NZ_CP043062.1\|WP_003814092.1\|3773964_3774864_+\|NAD-kinase	gnl\|CDD\|179379	PRK02155, ppnK, NAD kinase.	0
NZ_CP043062.1\|WP_003821189.1\|3761625_3762798_+\|VWA-domain-containing-protein	gnl\|CDD\|226346	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP043062.1\|WP_003814090.1\|3772845_3773850_-\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	1.1274e-145
NZ_CP043062.1\|WP_003814065.1\|3760202_3760556_-\|cytochrome-c	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	6.05638e-23
NZ_CP043062.1\|WP_010927279.1\|3776573_3777794_-\|ISL3-like-element-IS1001-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.63558e-80
NZ_CP043062.1\|WP_003821191.1\|3757892_3759149_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0

>NZ_CP043062.1|WP_003821187.1|3764100_3766851_+|insulinase-family-protein
MRLPLLSRRLNALLVSSFLAFQAGAASLPAGVSEVSSIEGITEYRLANGLRVLLAPDASKPTTTVNMTYLVGSRNENYGQTGMAHLLEHMLFKGTPAIRNALGEFSRRGLQANGSTSSDRTNYFASFAANPETLKWYLGWQADAMVNSLIAKEDLDSEMTVVRNEMESGENNPFRVLMQKMQAAAYQWHNYGKSTIGARSDVENVDIAQLRAFYHEYYQPDNAVLIVAGKFDPQTALADIQSSLGKLPKPKRTLPPEYTVEPVQDGERSVTLRRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSGRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDWRLFFLQRDRVRDAKLDDVQRAAVAYLVRSNRTEGRYIPTEKPQRAPLAQRADLAAVFKDYKGDPNFKAVEAFDPSPANIDKRTLRRTLDLPNGQVELALLPKATRGDRVQAELLIQFGDAEALRGQRVPLAAAAALLDRGTDKLSRQAIQDRLDQLQAEAAINGSGTNLVVNISTLGKNLPDVMALVLDVVRNASFPQDQVEEYKRQAITMVQDAMTDPTALASRALARHNNPWPADDVRYVPTFDEALEQLRSLSRDDLAAVSGKLYGAGRIKFSAVGEFDPAAVEAVLRKGLDGWRSAPAYTRLPDPYRAVPAQQFDIATPDKANAFYISRMPLQLQDTNADYPALYLANFLLGTSETSRLWHRVRETEGLSYNVRSNLSVSSYEPSANWTIYAIYAPQNRARLEKAISEELARALKDGFTDQEVRDGVVALLNYRNLARAQDDVLADTWVNYMQTGRSFQWSADMDRKLEALTPDQVNAALRKYLKPDAFSTAVAGDFTKKSAP
>NZ_CP043062.1|WP_003814072.1|3763393_3763768_-|hypothetical-protein
MLTDIVTRALSQLLGNSLSGDVIKGRFRYAYASDDGRFVAILGHDLTTYVVDVDAQRYFAECAGVPCGFAGHVLEMEGAQEHGHPWPAVNDLFDLDMDGDEIAWRRCPGAVALAATRQAQSRVA
>NZ_CP043062.1|WP_010929083.1|3762801_3763356_-|N-acetyltransferase
MNATPSPAPTGATLVDCTHDRHAAAILDIFNDAILTSTALYDYQPRALASMEAWFLAKRQGGFPVVGFEDAAGVLMGFASYGTFRAWPAYKYSVEHSVYVDRRYRGRGLGEALLRALIERARLQQVHVLVGGIDATNAGSVALHRKLGFVHAGTITQAGFKFGRWLDLAFYQLTLDTPLRPVDG
>NZ_CP043062.1|WP_003821189.1|3761625_3762798_+|VWA-domain-containing-protein
MLIDFFYHLRAHKLPVSVQEYLTLLEALRQRLMAPTLDDFYFLARTALVKDESLYDRYDAAFGAYYRGIAAALPADRDIPLDWLIKEFEKTLTPEEKAAIEAHGWDKLMELFKQRLEEQQERHAGGSKWIGTGGTSPFGNGGYHPEGIRVGGDSAGNRTAVKVWDMRQFRDYDDQLELGTRNFKVALRRLRRFARQGADLELDLDDTIASTARNAGHLDLRLVPERRNTVKVLMLLDVGGSMDDHIARVEELFSAARSEFRHLDVYYFHNCPYENLWQNNRRRQNERFDTWDVLRKYNADWRLIIVGDATMSPYEILQPGGSVEHYNKEAGAVWLRRLLDAWPKAAWLNPEPTASWRYRQSIALLRDIMQDRMYPVTVAGLEQAMRQLSK
>NZ_CP043062.1|WP_010929082.1|3760716_3761604_+|MoxR-family-ATPase
MPTSASSSSAPAQPARFEGTDRYVATDDLKLAVNAALTLQRPLLIKGEPGTGKTILAEEVARALDRPLLQWHIKSTTKAHQGLYEYDAVSRLRDSQLGDEKVRDIRNYIVQGTLWQAFEAPEPVVLLIDEIDKADIEFPNDLLRELDRMEFHVYETRQTVQARHRPLVIITSNNEKDLPDAFLRRCFFHYIRFPDRDTMRDIVGVHYPDIRQDVLRAALDTFFALREAPGLKKKPSTSELLDWLRLLLAEAIPAAEIDAHAATAVPVLAGALLKNEQDVHLLERLGAMARGAQRR
>NZ_CP043062.1|WP_003814065.1|3760202_3760556_-|cytochrome-c
MKLRISMTRTVSVLAVLASCAIAGPAAAADAAPVGNAQNARDKVSMCIGCHGIPGYKASFPELYHVPMIAGQNAKYIEAALNEYRKGARSHPTMDAVAGSLSDQDIADLAAYYSSLK
>NZ_CP043062.1|WP_003814063.1|3759827_3760190_-|cytochrome-c
MKRFTFALAGIVLATAGVSAQAQDVVAGKAVFDKFNCASCHGADAKTSVQPEYPVLAGQHADYLAHALKAYKRGAAGSAATANVRKNPIMGAFAAQLSDQDIRNVAAWLAAQPSDLGVRQ
>NZ_CP043062.1|WP_010929081.1|3759351_3759777_+|DUF1841-family-protein
MFNPSRDQVREFFIETWRKHRATEVLTPLESMALDWILEHPEYHGDLESPEAMTAEYPVEHGRTNPFLHLSMHLAIAEQLSIDHPRDIRAAYQRLVGRGDAHQAAHEIMECLGQVVWEAQRLGTPLDSDAYIELIRQRAER
>NZ_CP043062.1|WP_003821191.1|3757892_3759149_-|NADP-dependent-isocitrate-dehydrogenase
MSYQHIKVPTGGQKITVNADYSLNVPDQVIIPVIEGDGTGADITPVMIKVVDAAVQKAYAGKRKIHWMEVYAGEKATKVYGPDVWLPEETLDAVKDYVVSIKGPLTTPVGGGIRSLNVALRQQLDLYVCLRPVRYFKGVPSPVREPEKTDMVIFRENSEDIYAGIEYMAESEQAKDLIQYLQTKLGATKIRFPNTSSIGIKPVSREGTERLVRKALQYAIDNDRASVTLVHKGNIMKFTEGGFRDWGYALAQNEFGAQPIDGGPWCKFKNPKTGREIIVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEILSAEMMLRHMGWTEAADLIIASMEKSILSKKVTYDFARLLEGATQVSCSGFGQVMIDNM
>NZ_CP043062.1|WP_065956704.1|3756712_3757675_-|hypothetical-protein
MCPPYDKAAALRGLAGARRVALLMAPRLGDTLLMMNMARNLAAHGREVSIFGDYIHGLRDWFPGLDIRPSLSEEQAGQVLPGYDCAAQMHVGWPYALHAHQPNYFYYDAHVVITGRGFVKLFQIRDFCREQLGLAQAGADNGLRPPPQVQPHRSHPRRVALHPTSTGAQRCWAPRHFKELGLRLLHEGYEPNYIVAPHERAEWSWVLDHGLHLPQFPSLSEVAGFIHASGWFIGNESGIGHLASNVGVPTLSLTGRPTRTRAWRPAWSTSRIVYPALIPGGRWRDRLWREWLSPRRVMSAFHKLQADDRRQPVGVPWGKI
>NZ_CP043062.1|WP_010929084.1|3767041_3768175_-|molecular-chaperone-DnaJ
MAKRDYYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLGDEQKRAAYDRYGHAGVDPNAAGMGGGMGGGMGGGFADAFGDIFGEIFGAGRRGGGGPQVYRGADLKYALEITLEQAASGFDTEIRVPSWENCDTCHGSGAKAGTSPKTCRTCGGSGAVRMQQGFFSVQQTCPTCHGTGKEITDPCPSCDGVGRTRRNKTLQVKIPAGIDDGMRIRSSGNGEPGINGGPPGDLYVEIHIKQHKIFQRDGDDLHCELTIPFTTAALGGELQVPTLGGKAEISIPEGTQSGKTFRLRAKGIRGVRGSYPGDLYCHVVVETPVRLSDEQKAILRQFEASLNDGGDRHSPQSKSWTDRVKEFFS
>NZ_CP043062.1|WP_010929085.1|3768275_3770201_-|molecular-chaperone-DnaK
MSKIIGIDLGTTNSCVAVLDGGQVKIIENAEGARTTPSIVAYMDDGETLVGAPAKRQAVTNPKNTLYAVKRLIGRKFDEKAVQKDIDLMPYSIVKADNGDAWVEVHGKKLAPPQVSAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKTEKGDRKIVVYDLGGGTFDVSIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRIIDYIISEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSSSQQTEINLPYITADASGPKHLNLKITRAKLEALVEELIERTIEPCRVAIKDAGVKVSDIDDVILVGGMTRMPKVQDKVKEFFGREPRKDVNPDEAVAAGAAIQGSVLSGERKDVLLLDVTPLSLGIETLGGVMTKMIQKNTTIPTRYSQTFSTADDNQPAVTIKVFQGEREIAAGNKGLGEFNLEGIPPAPRGLPQIEVTFDIDANGILHVSAKDKGTGKENKITIKANSGLSEDEIQRMVKDAEANAEEDHRLAELAQARNQADALVHATRKSLTEYGEKLEAAEKESIEAAIKDLEDILKTGDKAEIDAKVEALSTASQKLGEKMYADMQAQQQAQQQQAADNAKPVDDNVVDADFKEVKRDQ
>NZ_CP043062.1|WP_003821185.1|3770291_3770672_-|thioredoxin-family-protein
MAAAPFDPAEVFQVFGMRRVDSASFDEQVVQAPGDDLRCVFLWGQDCYNCGIFKQTALLQRQALLALELSWFEADVYADEALGRRFSLHGVPTFVLYRSGKRLGRVTGWPGLPQFSAAMQRLRDGT
>NZ_CP043062.1|WP_003814083.1|3770679_3771234_-|nucleotide-exchange-factor-GrpE
MTAPQEPVDSTPESGENAATPGLEDDLSAELAALRAELEAAQATVKAQQEQVLRAAAEAENVRRRAQEDVAKARKFGIESFAESLVPVKDSLEAALAQPDQAAQAWREGVEVTLKQLTAAFERNLLKEIAPAQGDKFDPHLHQAISSVPADQPANTVLQLLQKGYVIADRTLRPALVVVSAGQG
>NZ_CP043062.1|WP_003814085.1|3771375_3771618_-|hypothetical-protein
MNPPRKPTIGTSGPPGHANLEEDQLERELDEALLETFPASDPIAITSEDERDEPDDKVDEALEDTFPASDPPAPAQPGKK
>NZ_CP043062.1|WP_010929086.1|3771699_3772788_-|ferrochelatase
MFLRLFKYLWPERYLPEIPAQDPFDENPPPCGPGRVGVLLVNLGTPDEPTRGAIRRYLGEFLSDPRVIEIPRYLWMPILHGLVLAMRPKKLAPRYAGIWMEEGSPLLVYSQRQAAGVRQGLAARGVHAEVELAMRYGKPSIPAAITALRERGCDHILAVPLYPQYAASTTATVVDAVTRHAGRLRDQPALRFVKRFHNDPAYVEAQAGRIAEFWQAHGRPQKLVMSFHGLPRYSIELGDPYYRDCLDTARLLRERLGLREDEVEVTFQSRFGSARWLEPYTEPTLAELARQGVTEVDVVCPGFVADCLETLEEISQECRDAFVAAGGRQFRYIPALNDCPPWIEGLTDLVERQLRGWPTGNP
>NZ_CP043062.1|WP_003814090.1|3772845_3773850_-|heat-inducible-transcriptional-repressor-HrcA
MDDRARALLKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMADLEELGLIHSPHTSAGRVPTPRGYRMFVDSLLAVRAYQFEPAHIGELLPVSEPSRAVNAAAALLSNLTQFAGVVLTPKRTQIFRQIEFIRLSDKRVLLIIVTPEGDVQNRILSAQRDYTEAELLEAGNFFNVHFSGKSFDAVRRTLSTELAQLRDDISRLMQAAVEAGAEAADDGEAVVISGERKLLDVTDIASDMDRLRKMFSLFEKKTDLLQLLDVSSRAQGVQIYIGGDSQLVPMEEVSVITAPYGVDGKVIGTLGVIGPTRMAYERVIPIVDITARLLSNALSHNQ
>NZ_CP043062.1|WP_003814092.1|3773964_3774864_+|NAD-kinase
MYFPIVALIGRYQDTGLDAPLTALAQMLTQAGRRVLVEAETARNAGVSGYPVADWDEIGRTATLAVVMGGDGTVLGAARHLAPYGVPLIGINHGRLGFITDIPLQDAHDALGRVLEGNYQAEDRMLLQGGVWRGEQQMYSASAVNDVVLNRAGRGGMIEVRVELDGAFMYTQRADGLIIATPTGSTAYSLSANGPILHPGMNAMVLVPVAPQTLSNRPIVIPDSGVLNMTLTAMGRVEIGASVHFDMQTWSDLQPGDRITVQRAPHTIRFVHPEGYSFFSTLRRKLHWNLMPQATDNLE
>NZ_CP043062.1|WP_010929087.1|3774879_3776541_+|DNA-repair-protein-RecN
MLRTLHIRDFVIVEQTELHFGDGFTVFSGETGAGKSILIDALALTLGERGDASMLREGAARADITAVFDAPPALRDWLAERELDSGDELALRRVIDSQGRSRAYINGMPATIAQLRELGDGLVDIHGQHAHQSLMRPEAQRDLLDAHGGHAELRQTVAQAWKQWRALARQLDTAEQDAEALAAERDRLQWQSDELDRLGLGPDEWDALQTEHTRLSHAQSLLDGASRILEALDGEHDSAQYRLNGAAHQLQQMLRHDPALQGIGDELESARIAITEAVSDLNNYVSRVELDPQRLADVEARLSAVFETARKFKCEPHGLPALRDSLHGKLAEMQAASDVQALRAQAEAAQARYEAAAARLSAARRKIAKDLGKQVTQAMQTLSMQGGRFEAALTGGAPSAHGSEQVEFLVAGHAGSTPRPLAKVASGGELSRISLALSVIASRAARVPTLIFDEVDSGVGGAVAEAVGKLLRELGQRHQVLCVTHLPQVAACAHAQYRVSKVESGGSTRSRIAELDAEARVEEVARMLGGIKITATTRDHAREMLGGHTAPAA
>NZ_CP043062.1|WP_010927279.1|3776573_3777794_-|ISL3-like-element-IS1001-family-transposase
MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCEQCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVTDRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFALHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYELEIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNRDNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYEQAEQSGIAALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRAAFPGNAR

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Crispr_ID: NZ_CP043062_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043062_6

3919978-3920062

Orphan

Consensus_repeat	Method
CTGTCCCCGCGGGGACAGGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043062_6

>merge|NZ_CP043062|6|3919978-3920062|CRISPRCasFinder
CTGTCCCCGCGGGGACAGGCACCCTGTCATACGCCATGAACGCTTGACGGCCAAGACGGTATCTGTCCCCGCGGGGACAGGCACC

>NZ_CP043062|6|6|3919978-3920062|CRISPRCasFinder
CTGTCCCCGCGGGGACAGGCACC	CTGTCATACGCCATGAACGCTTGACGGCCAAGACGGTAT
CTGTCCCCGCGGGGACAGGCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043062.1\|WP_003814327.1\|3912876_3914268_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP043062.1\|WP_041937284.1\|3921374_3922076_+\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|236347
NZ_CP043062.1\|WP_003814325.1\|3911879_3912860_+\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP043062.1\|WP_003814321.1\|3907938_3909693_-\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
NZ_CP043062.1\|WP_010929158.1\|3909799_3910696_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176107
NZ_CP043062.1\|WP_003814332.1\|3916414_3917053_-\|membrane-protein	unknown	unknown	gnl\|CDD\|182775
NZ_CP043062.1\|WP_003814329.1\|3914419_3914956_+\|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|223873
NZ_CP043062.1\|WP_010929162.1\|3920072_3921122_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP043062.1\|WP_003814351.1\|3924633_3925590_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP043062.1\|WP_010929160.1\|3917139_3919029_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP043062.1\|WP_010929166.1\|3927007_3929110_-\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|129868
NZ_CP043062.1\|WP_010929161.1\|3919025_3919967_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NZ_CP043062.1\|WP_010929159.1\|3910760_3911744_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE	unknown	unknown	gnl\|CDD\|270295
NZ_CP043062.1\|WP_019247543.1\|3914886_3916272_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|182376
NZ_CP043062.1\|WP_010927027.1\|3925616_3927011_-\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
NZ_CP043062.1\|WP_010929165.1\|3924123_3924615_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|172582
NZ_CP043062.1\|WP_003814344.1\|3922072_3922771_+\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP043062.1\|WP_010929164.1\|3922771_3924127_+\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|130997
NZ_CP043062.1\|WP_010929167.1\|3929280_3930321_+\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270320
NZ_CP043062.1\|WP_003814358.1\|3930364_3931108_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715

Protein	Function_ID	Function_description	E-value
NZ_CP043062.1\|WP_003814327.1\|3912876_3914268_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP043062.1\|WP_041937284.1\|3921374_3922076_+\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|236347	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated.	8.14329e-101
NZ_CP043062.1\|WP_003814325.1\|3911879_3912860_+\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	2.66124e-42
NZ_CP043062.1\|WP_003814321.1\|3907938_3909693_-\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NZ_CP043062.1\|WP_010929158.1\|3909799_3910696_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.752e-38
NZ_CP043062.1\|WP_003814332.1\|3916414_3917053_-\|membrane-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	1.10927e-69
NZ_CP043062.1\|WP_003814329.1\|3914419_3914956_+\|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	5.46598e-54
NZ_CP043062.1\|WP_010929162.1\|3920072_3921122_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP043062.1\|WP_003814351.1\|3924633_3925590_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	6.01101e-118
NZ_CP043062.1\|WP_010929160.1\|3917139_3919029_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP043062.1\|WP_010929166.1\|3927007_3929110_-\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.19046e-96
NZ_CP043062.1\|WP_010929161.1\|3919025_3919967_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.00887e-155
NZ_CP043062.1\|WP_010929159.1\|3910760_3911744_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE	gnl\|CDD\|270295	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	3.25651e-157
NZ_CP043062.1\|WP_019247543.1\|3914886_3916272_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|182376	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA.	1.25625e-84
NZ_CP043062.1\|WP_010927027.1\|3925616_3927011_-\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	3.67215e-107
NZ_CP043062.1\|WP_010929165.1\|3924123_3924615_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|172582	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.	1.33001e-89
NZ_CP043062.1\|WP_003814344.1\|3922072_3922771_+\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.35754e-64
NZ_CP043062.1\|WP_010929164.1\|3922771_3924127_+\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	7.39002e-147
NZ_CP043062.1\|WP_010929167.1\|3929280_3930321_+\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.18155e-85
NZ_CP043062.1\|WP_003814358.1\|3930364_3931108_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.58304e-45

>NZ_CP043062.1|WP_010929161.1|3919025_3919967_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MTPRAIICLAGPTAAGKSASTLALAQRWPLEIINVDSATIYRGMDIGTAKPSAAERAQVPQHLLDIRDPAQSYSAAKFRADALRLIAEIHARGRIPLLAGGTMLYYKALREGLDDLPQADPALRAELEARAARLGWPALHAELALLDPATAARLSPNDSQRIQRALEICRLAGQPMSALLQGERRGDAPSPYRYVTLSLEPSERAALHARIAQRFDAMLAAGLVEEVRGLHARPDLHPGLPSVRCVGYRQMWSYLDGDIDLDTAREQGVAATRQLAKRQLTWLRAQPERVIIDCLAGDAVARTVDAMARALPD
>NZ_CP043062.1|WP_010929160.1|3917139_3919029_+|DNA-mismatch-repair-endonuclease-MutL
MSDRRPIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGSGIPPEELPLALTRHATSKIRSLDELESVASMGFRGEALASIASVADLTIISRTRGAEHAWQIDGGSLQVSPASGPPGTTIDVRQLFDRVPARRKFLRSEATEFGHCVDAMERIALAHPEVAFRLFHHDRAQRQWLPADHGQRIRDVLGAEFVDHVLPVQAAAGAIALMGMVTRPTAARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNVHPAKHEVRFRDSGAVHRFVSQVVGQTLAQTGGAEAVPAGVPDGAAPDAAYAGEPAAAAPGLAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAGIPATDWQSLYRPLPGDAAPAATALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKRALDDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLARGDIESLARAVLRDLGAVGVSRLLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQMEITERADQCNHGRPTWVQWSVNDLDKLFLRGQ
>NZ_CP043062.1|WP_003814332.1|3916414_3917053_-|membrane-protein
MLDFFNMVLHIDQTLGIWVEQYGVWVYLVLFLIVFAETGLVVLPFLPGDSLLFIAGAFGATGHMDPVLTAALLIVAAISGNTVNYTIGRYIGPRVFSMNLRFLDRNALMRTHAFYEKHGGKTIVMSRFIPVIRTFAPFVAGVADMRLARFQLFNIGGALLWVISLVAAGYFFGNIPLVREHLNTIVLIGLGAAIVPVVIGALVRLLQVRRGQ
>NZ_CP043062.1|WP_019247543.1|3914886_3916272_+|N-acetylmuramoyl-L-alanine-amidase
MVERDCPPAHGALSPRAAARRRLISVAATLLVLPVVPRLAHAATILAVRTWPADEYTRVTLELDSELKAEHFTLENPHRLVVDIEGLSVNAALNDLVSKVRHDDPYIQGLRVAQNRPNVVRLVFDLKQSVAPQVFTLKPVADYQYRLVLDLYPKVAQDPLMAILNKQSGPDVDDPLARVLDEIARNQPAPDQPAAPLARGQEPAPALPAPPIKPLPAPGRSASRKRMLTIALDPGHGGEDPGAIGRSGLREKDVVLRIARRLKTLIDAQPYMRAYLTRDDDYFVPLHVRVQKARRVRADLFVSIHADAFIKPTANGSSVFALSERGASSTQARWLADKENAADLIGGVNLGSHDRQVAKVLLDLSTTAQINDSLKVGSAFLDEIKKINRLHKNRVEQAGFAVLKAPDIPSILVETAFISNPKEEALLRSAAHQEKLAQAMMTGIDRYFTANPPLARVGDVS
>NZ_CP043062.1|WP_003814329.1|3914419_3914956_+|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MSAPPTTLCLHLPDEAATEDLARQLAPLVDGRRGGQPGGQIHLQGDLGAGKTAFTRALLRECGIQGRIKSPSYALLESYKVSNLYFYHLDFYRFSDSREWLDAGFRDLLRDDAVVLIEWPERAAGLLPPPDLLISLAYADQGRDASLTAHTARGQTWLNAIVPPPTARSLPAPPPADA
>NZ_CP043062.1|WP_003814327.1|3912876_3914268_-|class-II-fumarate-hydratase
MKTRTEKDTFGPIEVPEQHLWGAQTQRSLHFFAISTEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVVAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVLPALKALRGTLAAKSAAFYDIVKIGRTHLQDATPLTLGQEISGYVAQLDLAEQQIRATLAGLHQLAIGGTAVGTGLNAHPQFSAKVSAELAHDTGSAFVSAPNKFQALASHEALLFAHGALKTLAAGLMKIANDVRWLASGPRSGLGEISIPENEPGSSIMPGKVNPTQCEAVTMLAAQVMGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDMTNARR
>NZ_CP043062.1|WP_003814325.1|3911879_3912860_+|AEC-family-transporter
MSENSSLRRDAEAPLLSIFLPGSMSVALLVLPDFMLVALGWALRHKLGFSREFFAGTERMVYFVLFPALLFQSILRTPISAGHAMQLLQATAALMACGVALAWLAGPVLRPAPVALASAAQCGYRFNTYIGLALAASLAGGPGQTIMALIVGFAVPMANVAAVYGLARHSGNGLLRELARNPLLVSTLLGLACNLAGLSLPGPIDTVMARLGAAALALGIMCVGASLAWEGGKGHGRLIGWMLAVKLAAMPSAALGIAWALGLPALETRMLVLFSALPTASAAYVLAMRMGGDGRMVAVLISLGTLASAATIPLWLTAAAGLGAPN
>NZ_CP043062.1|WP_010929159.1|3910760_3911744_-|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE
MNKVRTLVQAIAVATGLVAAAGAQAADAYPSKAIRVIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSLGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQGSAPSGNTPEEFAKEIKEQYDWAQDVVKKQNIKLD
>NZ_CP043062.1|WP_010929158.1|3909799_3910696_+|LysR-family-transcriptional-regulator
MRLRHIEIFEAIRRTGSLTEAAALHISQPAASKLLAHAEAQLGFKLFERVKGRLVATRETEILAPEVARLNQDLGSVRRLAASLRDRPHGHLRLGCAPALGLGLLPGVVRASRDAQPGITFDIHTHHSAELVQGLLAHELDLAITFDANDHPGLTRTSLGHTELVHLSRRPGAGTTRLQELGGETLIVLDARDASGSLLQMALDAQGLAPRVAIQVQTHYVACALAEAGCGDAVVDAITARAMLRPGMALRRLEPALRVPISVMTRSQDALSTLHHDFIERLRQACSVLQAQPAPQPE
>NZ_CP043062.1|WP_003814321.1|3907938_3909693_-|gamma-glutamyltransferase
MPLRTLLAALCAAAICQAPAWAREAPGVAREDVNPEIASARSERAQAHAQRYMIATANPLASEAGYRILRAGGSATDAIIAAQLVLNLVEPQSSGIGGGAFMVHYDRGAGELRVYDSRETAPAAARPDRFLREGKPLSYAESVNNGRAVGTPGLLRGLELAHRQHGKLPWQALFEPAIAMAEQGFAVSPRLHESIAGDKALAAQPAAARYFYGPDGQAWPVGHRLRNPEFAATLRSIAREGADAFYRGPIARDIVAAVRAHPTPGDLAEADLAGYRAVVREPVCGLYRGYRLCGAPPPSSGPLAVLQMLGELEQYPLARMRPGSVEAVHYFSEAGRLAFADRDFYVADPAFVDVPVRALLDPAYLRQRGALIRPDRSMKTALPGDPQGLLAERARDDAIEVPSTSHLVAVDAAGNVVSMTSTIEAAFGSKIFVRGFLLNNEMTDFSSSYRDPEGRLVANRVEPGKRPRSSMAPMIVFRAGKPVLALGSPGGSAIINYVAKTLVGVLDWKLDVQQAIALPNLGSRNKETELERGTALEALAPALRRMGHEVRITDFPSGIQGIVIGPHGLAGGADPRREGLALGD
>NZ_CP043062.1|WP_010929162.1|3920072_3921122_-|phosphoribosylformylglycinamidine-cyclo-ligase
MTNQHSAPLTYRDAGVDIDAGDALVDRIKPLAARTMRPGVLVGIGGFGALFEVPKKFREPVLVSGTDGVGTKLRLAFDWNRHDTVGIDLVAMSVNDILVQGAEPLYFLDYFACGKLSVDTAAAVVGGIARGCELAGCALIGGETAEMPGMYPDGEYDLAGFAVGAVDKSAIIDGKSIQPGDVVLGLASSGAHSNGYSLVRKILERAGARPDQDFHGQPLVDVVMAPTRIYVKQVLAALDRHGPAIKGLAHITGGGLLDNVPRILQPGMAAQLQRDGWEMPKLFQWLQQQGSVADAEMHRVFNCGIGMVLVVAADQADAVAATLREQGEIVNRIGEIVPQQDGMAQTVVV
>NZ_CP043062.1|WP_041937284.1|3921374_3922076_+|DnaA-regulatory-inactivator-Hda
MNRQLLLDVLPAPAPTLNNYIAGPNGQALAAAHALTAGRAIYLWGPAGCGRTHLLRGLSARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESAATGRAFALAVSGDRAPMSLPLREDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQLAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITTPLLRAMLADPHSQAT
>NZ_CP043062.1|WP_003814344.1|3922072_3922771_+|HAD-IB-family-hydrolase
MTTRRLALFDLDHTLLPLDSDYQWADFLARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAWHEEFMRDVIRPSLTAQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAANPSPGLREIAQARGWQVIDLFDHLEDAKS
>NZ_CP043062.1|WP_010929164.1|3922771_3924127_+|polynucleotide-adenylyltransferase-PcnB
MITETIRKFVGRLFAPALRGPQRIGAERHGIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRNDGLHHGLLPLLDVVLEQPGGENFVELALERTDARVRAGKTISPSFLFAALLWQLVDVRWKQLRAQGEHNIPALVQAADSVLDEQTEKLAIQRRFSSDMREIWFMQPRFERRAGKTIYRMLEQPRFRAACDFLQLRAAAGEFDSVLAQWWMDLANGDDATRAEMIEETAHLPREASDAPAQKRRRPRRRPSNRPREPQ
>NZ_CP043062.1|WP_010929165.1|3924123_3924615_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MNGSPASALAYVGLGANLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVDAQGPDFVNAVAALDTTLAPLDLLDLLQALEQRHGRERPYRNAPRTLDLDLLLYGEQAIDHPRLSVPHPRIHERAFVLAPLCELAPGLRLAQGDCAALLAALEDQAIEPLR
>NZ_CP043062.1|WP_003814351.1|3924633_3925590_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKKRIWGTLLAAAMTVGSGAAHAGYPDKAVRIVVPFAAGGGVDALARPFAKELGDILGQSIVVENKPSNTGQIGATDVARAAADGYTLLLSSAAFATTPAFYPQVPYDPVKDFSPVMIMAAAPQVLVASNRFKAASLPDVLAQARQSDRINFALSASTGIQALATAMLAGQGGVTFMTIPYKGAGAAFMDLISGEVDLMIDNPASSLVHVRAGKLRVLATTGSKRMAILPDVPTVAETLPGFEARNWFVLAAPQGTPPAVIQKLNEASARALNTPAMRQMLERDGIDLVADSPAHAAAFLQDEIAKWGKVVKEGNLQP
>NZ_CP043062.1|WP_010927027.1|3925616_3927011_-|MmgE/PrpD-family-protein
MTMNQAVSPLAGTPAVSAELARFAATSRWEDVPQAVRHEGRRSLLNYFAVALAAARDPVLDTATRTYARFASDARASLVGRARRLDMLNAAALNAMAANVYDFDDTHHPTIIHPTAPVAPALFALAETRPLSGAQLLHAFVLGVEATCRIGNAMSPGHYARGWHITSTCGVFGAALGAARCLGLPGDAMVAALGCAAVQAGGLVETLGTAAKSISVGNAARNGLLSALLAAEGFDGPPQPLEGVRGYLRVAADAPDIAAVSAGLGERWEVLNNTYKPYPCGVVLNPVIDACLALAADPRIAGGGWAAIERIELTGHPLLKQRTDRPGVATGRQSQVSAQHAVAVALVRGRAGLPEFSDEAVADAGLRALGLRLGFRDDASMSVDAVKVRIAFQDGTLLEREVQAARGSRERPLQDGEIEEKLRELCRHGGARVDADRLIEAVWTLDEAGDAAAVMRLAAEQPAA
>NZ_CP043062.1|WP_010929166.1|3927007_3929110_-|TRAP-transporter-large-permease-subunit
MSSIEMPAPVMPIEPAELAGASPYPLAIDQDFCLIRWMAAISRACGALATVALLLMALSMCYEIFSRYLFNAPTAWATEISGYLLVATVFFGLAAAQASNSHVQVELWIDRLSAPVRLRVELLCQWLALLFCVVLGWQMASFNVREYLNDTRDWGLLSTPQWMPELAVSVGIVVFCMSILVDIYRLSPPAQAWRRWLTPTLLALLAAALVALGANAVPMAAGGRFDWGMALIVAALLACAWAWSGVRTLAHVVLVVGGCAVLYGLARGQSLGWVAFLLVASMMLLLFLGVRIGVALGLVGLFGVYFLLSRPQLSLLAERAWSSTNTFTLTAVPMFIFMGGLLLRSGITAGMFDALVRWFGRAPGGLAHASAGASAVFAAVSGSSLATAATLGKVACPDMIERGYSPRLTYGVAAAGATLGILIPPSIPMIIYGTTVGASVTHLFLAGMLPGLLLMACFMLGALVWALAVPGSAPVARAYTLREKLSASRGMVPFVAIIGAVLGSMYTGVATPTEAAAIGAVSAFVLCLVRRQLSWRALFEIAHDSAKVTALLLLIVVGAGIFSWVFDYLRLPREVVNLIQGADLSPALIVAAMVLAYLVLGMFVESIAMMLMTLPVTYPIAMSLGLDPIWFGVFLVLMIELGLITPPVGMVLFVLRSMNEKARFTDIIRGALPFVLIILLFLCLIYIYPQIVMWLPQQVK
>NZ_CP043062.1|WP_010929167.1|3929280_3930321_+|TRAP-transporter-substrate-binding-protein
MSQRFPLPRGFQAALAAAALCTASWSGAAAQTYDLTMAVITSPGDGYSILTASVPERVAKATDGKVKVTVSDSLVPPAQIATAVREGRVDMSAALHTYLAADEPRMGIFNLPGLINNIQEYKQVCDAFWCEDTRKIWKDKWNAIVLAEGAWCTQQLFSKDPIHKVEDFKGKRLRVHNPQTAEVVNALGGKPVAMPTTEIFPALERGVIDGLFISTCVGGSLEFWRIAKNVQNWSLGPINGWAILANPDSWQKLPADVQKQVQGAMDALQQEAFGNYDTFVSNAQQEMMKKGVTFWVAPEEERAKLMQQQYIGPSYEAWNKRAKQVGFDGPAYLDRVRTTLGKSASN
>NZ_CP043062.1|WP_003814358.1|3930364_3931108_+|GntR-family-transcriptional-regulator
MPFPFCNTNRMTSPAAPEGEFKVQRVASVLRHSVTESIRNAILVGRFRPGERLPERELCEMTGVSRTLVREALRQLESEGLIVVIPHRGPVVERLSPEQARGIYQVREELEGLACQLFAEHATEPQLAALQEAFQALKRALTRGTPLEQIAAKNAFYQQLLDGAGNEALTTTLRLLNSRVMLLRSTSMQAPGRAKHSVAELSNLLQALVARDGKAARKAGSLHVRNAASVAIAILQDSLADAAATAE

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Crispr_ID: NZ_CP043062_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043062_7

4130670-4130763

Orphan

Consensus_repeat	Method
GTGCCTGTCCCCGCCGGGACAGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043062_7

>merge|NZ_CP043062|7|4130670-4130763|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCACCCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGCGTGCCTGTCCCCGCCGGGACAGGCAC

>NZ_CP043062|7|7|4130670-4130763|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCAC	CCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGC
GTGCCTGTCCCCGCCGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043062.1\|WP_010927279.1\|4130800_4132021_-\|ISL3-like-element-IS1001-family-transposase	unknown	unknown	gnl\|CDD\|225995
NZ_CP043062.1\|WP_010929253.1\|4119095_4120289_-\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|180775
NZ_CP043062.1\|WP_010929261.1\|4137344_4137800_-\|multidrug/biocide-efflux-PACE-transporter	unknown	unknown	gnl\|CDD\|226610
NZ_CP043062.1\|WP_010929260.1\|4136415_4137339_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP043062.1\|WP_010929255.1\|4122767_4123685_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NZ_CP043062.1\|WP_010929256.1\|4124733_4125519_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|181723
NZ_CP043062.1\|WP_010927085.1\|4135666_4136326_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP043062.1\|WP_010929259.1\|4128321_4130439_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NZ_CP043062.1\|WP_157734664.1\|4138855_4139128_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP043062.1\|WP_041937294.1\|4121409_4122582_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173841
NZ_CP043062.1\|WP_003814676.1\|4120354_4121383_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|366103
NZ_CP043062.1\|WP_003814701.1\|4132163_4132634_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP043062.1\|WP_003814694.1\|4126940_4127696_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NZ_CP043062.1\|WP_003814685.1\|4123695_4124667_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NZ_CP043062.1\|WP_003814706.1\|4134755_4135670_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP043062.1\|WP_033446464.1\|4133166_4134612_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP043062.1\|WP_010929258.1\|4127806_4128325_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NZ_CP043062.1\|WP_003814713.1\|4137796_4138900_-\|ChbG/HpnK-family-deacetylase	unknown	unknown	gnl\|CDD\|212118
NZ_CP043062.1\|WP_003820700.1\|4132722_4133067_-\|TIGR01244-family-phosphatase	unknown	unknown	gnl\|CDD\|225984
NZ_CP043062.1\|WP_010929257.1\|4125515_4126745_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110

Protein	Function_ID	Function_description	E-value
NZ_CP043062.1\|WP_010927279.1\|4130800_4132021_-\|ISL3-like-element-IS1001-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.63558e-80
NZ_CP043062.1\|WP_010929253.1\|4119095_4120289_-\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|180775	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase.	2.86943e-175
NZ_CP043062.1\|WP_010929261.1\|4137344_4137800_-\|multidrug/biocide-efflux-PACE-transporter	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	1.97335e-52
NZ_CP043062.1\|WP_010929260.1\|4136415_4137339_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	6.02976e-19
NZ_CP043062.1\|WP_010929255.1\|4122767_4123685_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.19908e-60
NZ_CP043062.1\|WP_010929256.1\|4124733_4125519_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|181723	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein.	3.47115e-155
NZ_CP043062.1\|WP_010927085.1\|4135666_4136326_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	4.25651e-32
NZ_CP043062.1\|WP_010929259.1\|4128321_4130439_-\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NZ_CP043062.1\|WP_157734664.1\|4138855_4139128_+\|hypothetical-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.3327e-06
NZ_CP043062.1\|WP_041937294.1\|4121409_4122582_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	3.96966e-84
NZ_CP043062.1\|WP_003814676.1\|4120354_4121383_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|366103	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain. C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.	1.19321e-12
NZ_CP043062.1\|WP_003814701.1\|4132163_4132634_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.38587e-30
NZ_CP043062.1\|WP_003814694.1\|4126940_4127696_-\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.14565e-78
NZ_CP043062.1\|WP_003814685.1\|4123695_4124667_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.06741e-117
NZ_CP043062.1\|WP_003814706.1\|4134755_4135670_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	8.05606e-10
NZ_CP043062.1\|WP_033446464.1\|4133166_4134612_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	6.70342e-111
NZ_CP043062.1\|WP_010929258.1\|4127806_4128325_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.18053e-44
NZ_CP043062.1\|WP_003814713.1\|4137796_4138900_-\|ChbG/HpnK-family-deacetylase	gnl\|CDD\|212118	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria. This subfamily contains many hypothetical proteins, and belongs to the YdjC-like family of uncharacterized proteins from bacteria. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.	1.3947e-92
NZ_CP043062.1\|WP_003820700.1\|4132722_4133067_-\|TIGR01244-family-phosphatase	gnl\|CDD\|225984	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown].	3.40043e-35
NZ_CP043062.1\|WP_010929257.1\|4125515_4126745_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	6.62375e-118

>NZ_CP043062.1|WP_010929259.1|4128321_4130439_-|elongation-factor-G
MTRRTSIERYRNIGISAHIDAGKTTTTERILFYTGITHKLGEVHEGAATMDWMEQERGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQPQSETVWRQANKYGVPRIAFVNKMDRVGADFFRVQRQIVERLKGDAVPIQIPVGAEDHFEGVVDLVKMKAIIWDDASQGVRFEYRDIPPELQAQAEQWREKMIEKAAEANEALLEKYLSGQPLSEDEIKSGLRARTVANEIVPMLCGSAFKNKGVQAMLDAVIDYLPSPADVPAIIGHDERDREIERHPADDEPFSALAFKIMTDPFVGQLVFFRVYSGVVKSGDSVLNPLKSKKERLGRILQMHANERREISEVYAGDIAAAVGIKEITTGDTLTDPAHVIILERMTFPEPVISQAVEPRTKADQEKMGIALNRLAQEDPSFRVRTDEESGQTIISGMGELHLEILVDRMKREFGVEANVGKPQVAYRETIRSTVTDVEGKFVKQSGGRGQYGHVVLKLEPQEQGKGYEFVDAIKGGVVPREFIPAVDRGVRETLNTGVLAGYPVVDVKVTLVFGSYHDVDSNENAFRMAASMAFKEGMRRAKPVLLEPMMHVEVETPEDFTGNVMGDLSSRRGMVQGMEDIAGGGGKLVRAEVPLAEMFGYSTSLRSLTQGRATYSMEFKHYAEAPRQVAEQIIAARGSGAAARG
>NZ_CP043062.1|WP_010929258.1|4127806_4128325_+|MgtC/SapB-family-protein
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGAIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRHLEKRIAARDDKRVVAQPPP
>NZ_CP043062.1|WP_003814694.1|4126940_4127696_-|TerC-family-protein
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRAREGRGAGAAGG
>NZ_CP043062.1|WP_010929257.1|4125515_4126745_-|CoA-transferase
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAGHRRGPPASGGNRS
>NZ_CP043062.1|WP_010929256.1|4124733_4125519_-|crotonase/enoyl-CoA-hydratase-family-protein
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSRQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSRACELAFTGRSIDAARARELGLVPEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG
>NZ_CP043062.1|WP_003814685.1|4123695_4124667_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE
>NZ_CP043062.1|WP_010929255.1|4122767_4123685_+|LysR-family-transcriptional-regulator
MELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>NZ_CP043062.1|WP_041937294.1|4121409_4122582_-|acyl-CoA-dehydrogenase
MGAILGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAAGAPVSAHWIADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRKIWTTNAHRSHYMCALVRTSGASEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVLFDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRRDAAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR
>NZ_CP043062.1|WP_003814676.1|4120354_4121383_-|acyl-CoA-dehydrogenase
MVSTMQQDLYETFARALAGLCPLERVRELEAAADPRAGAARAWNEVDALGYGDALSPAEHGGAGLSLADAEGLLRAAGAMALPFPFADTLLARALLRAAGQAVPDGPIALGVALPHGAGWRCAPIAGVALAQAVAVEHDGCLALWPAPDAVQPGLFRPRASGAPAWRGTPAQAGRAGAPAGAVQAWRNAADAAGMAGAMQAVLDRCVAYVQERQQFGRALGRFQAVQQDISMLAEQVAAVAMAARLACASGALFPDPALAACARLRACEAVPVVCALAHAVHGAIGITEELPLGLYTARLHEWRATGMSEDDCAELLGRRVLADGERTLLDVVRGMVSAAHA
>NZ_CP043062.1|WP_010929253.1|4119095_4120289_-|acetyl-CoA-C-acyltransferase
MSVHPDPVVIVAARRTPIGAFQGALAHYSAPQLGAHALAAAVRQAGLQPDAAQEALMGCCLFAGLGQAPARQAVLGAGLPTDVQATTLSKMCGSGMKAAMLAHDMLRAGSADVVLAGGMESMSNAPHLIPKARQGYRLGDGQLLDHMYRDGLQDAYEGRLMGHYADLAAREYGFSREQQDAYAHESVLRAQRSVAEGEFAEEIAPIAGLARRGAPAAMVAVDETPGLCDVSRLASLKPVFNADGTVTAGNASSISDGAAALVLTRQAHAERLGLAPQARIVGHATAALPPGQFPAAPVRAIARLFERVGWDRDSVDLFEINEAFAVVTMIALRELGLPAERVNVNGGACALGHPVGATGARLIVTLMHALRRRGLRRGVACLCLGGGEATAIAIERA
>NZ_CP043062.1|WP_010927279.1|4130800_4132021_-|ISL3-like-element-IS1001-family-transposase
MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCEQCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVTDRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFALHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYELEIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNRDNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYEQAEQSGIAALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRAAFPGNAR
>NZ_CP043062.1|WP_003814701.1|4132163_4132634_-|universal-stress-protein
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>NZ_CP043062.1|WP_003820700.1|4132722_4133067_-|TIGR01244-family-phosphatase
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>NZ_CP043062.1|WP_033446464.1|4133166_4134612_-|PLP-dependent-aminotransferase-family-protein
MTVATSSPSGAGWQPVRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRRGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPTGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYRRHIERVRARVNEARLRSIQALQQLGLSVPHEPHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>NZ_CP043062.1|WP_003814706.1|4134755_4135670_+|DMT-family-transporter
MSPPSAQASAPSASPHAPSWEGYGYGLIGVLVFALTLPMTRLAVGELSPLLVGLGRALLAAVPAAALLWLTRSRRPDRAEWSGIVLAAVGIVVGWPVASTLAMASVPAAHGAVFNGLLPLSTAVFAAWRSGERPSPAFWSFAVLGAVLVAGYALRQGHGALQPGDLWLLLAVVLGGMGYAEGARASRTLGGWRTICWALVVSVPALLPAVLWLAHDAAWPSLPVAGAFAYLAFGSMFLGFFAWYRGLAIGGIARVGQIQLLQPFLTVVAAALLFNEQVEPITYVFAVAVVLVIAGGRRAMVRKA
>NZ_CP043062.1|WP_010927085.1|4135666_4136326_+|LysE-family-translocator
MIGSDLSSLDQAPLASLSVLMPLVLFTLVNSLTPGPNNVMLASSGLTFGFRRTIPHLLGISVGFSIMLLMVGLGLGATLERLPWLYSTLKYGGAAYLLYLAWKIATSGPMESGAERGKPLTFIQAALFQWVNPKAWVMIVSVVATYTPQHGYFANLIIATLVCGVVNLPSVGVWAAFGMALRRWLHRPAAVRAFNVGMAVLLVVSLYPVGLDLLALYTG
>NZ_CP043062.1|WP_010929260.1|4136415_4137339_+|alpha/beta-fold-hydrolase
MVCLPFRLSWRRMAAVLLLAAGALGFNQLDAWQRQAIFSPQTDQQRWWREPPAGTEVFDLALPNGDKVHAWYWQSPRRDAPTVLYLHGARWNLNGSAFRMEGWTGMGYSMLAIDYRGFGQSTPLLPSEQSASQDAAAALQELARRQPDPARRFIYGHSLGGAIAIDLAARPDLPPFAGLIVESSFTSIGAMLGTMKWGWVPGATLLVTQPFASVDKLAALTTLMLLLHGTADRVVPHTMSDELYRAAQQVPADLKRLVKIEGASHSGAIRSGRIYEDAVADFVRDAGRGYAGRQGAPTPLTASRPGT
>NZ_CP043062.1|WP_010929261.1|4137344_4137800_-|multidrug/biocide-efflux-PACE-transporter
MSSSSKQTPKTIKERFLHAFFFEIIAIGLSAPVAAWAMDQPLFDMGVLTAVIAWIALLWNMVYNAGFERLERRFGVVRTMPVRVAHAVGFELGLVLIIVLLAAWWLAISFWEAFMLDIGLLMFYLPYAFFYNLAYDKLRARWWGRIEPAGA
>NZ_CP043062.1|WP_003814713.1|4137796_4138900_-|ChbG/HpnK-family-deacetylase
MTSERYDEGQQPAHHVGPQRGQAGPFHAGDRDGPMGGGRGASDGNEPGNLSQQAAHVEEVSPLRNQAGDVRCRRIAVCGDDFGMNEAIDGALIELAGAGRLSAVSCMPLAPAFAADAPALARLDVDLGVHVDFTEAFAGAAPAAPGLAALLWRAYAGQLDPDWIDARLASQFDAFERAFGRAPDYVDGHQHVHQLPGILPRLRALLKRRYAGQRIWLRHTAPGLQFGLPLAEAAKARLIGALGAGALARAAGQEGWQTNRRMLGVYGFTGGPRRYAGLLHHWLMNARDGDLLMCHPGWPQVHGAAHASQRAAEYEVLAHPELGTWLARNGLRIVRLSQVRGRQASQESGKVRNVPHSGSFRRLASRL
>NZ_CP043062.1|WP_157734664.1|4138855_4139128_+|hypothetical-protein
MVGWLLAFVVSFTGHFRLTFRHLAASWTIAARRFFLVSALGFAINELSYAWLLHATSLPYDVLLALVLIGLAFLTFVASRLWAFRHRHAP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP043062_4	4.1\|3081341\|29\|NZ_CP043062\|CRISPRCasFinder	3081341-3081369	29	NC_022049	Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence	376987-377015	3	0.897
NZ_CP043062_3	3.1\|2769603\|28\|NZ_CP043062\|CRISPRCasFinder	2769603-2769630	28	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	479490-479517	6	0.786
NZ_CP043062_3	3.1\|2769603\|28\|NZ_CP043062\|CRISPRCasFinder	2769603-2769630	28	NZ_CP045303	Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence	2432-2459	6	0.786
NZ_CP043062_4	4.1\|3081341\|29\|NZ_CP043062\|CRISPRCasFinder	3081341-3081369	29	NZ_AP014706	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence	210180-210208	6	0.793
NZ_CP043062_4	4.1\|3081341\|29\|NZ_CP043062\|CRISPRCasFinder	3081341-3081369	29	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1136080-1136108	7	0.759
NZ_CP043062_4	4.1\|3081341\|29\|NZ_CP043062\|CRISPRCasFinder	3081341-3081369	29	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	537092-537120	7	0.759
NZ_CP043062_4	4.1\|3081341\|29\|NZ_CP043062\|CRISPRCasFinder	3081341-3081369	29	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	812700-812728	7	0.759
NZ_CP043062_4	4.1\|3081341\|29\|NZ_CP043062\|CRISPRCasFinder	3081341-3081369	29	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	60621-60649	7	0.759
NZ_CP043062_4	4.1\|3081341\|29\|NZ_CP043062\|CRISPRCasFinder	3081341-3081369	29	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	323975-324003	7	0.759
NZ_CP043062_4	4.1\|3081341\|29\|NZ_CP043062\|CRISPRCasFinder	3081341-3081369	29	NZ_CP015007	Aminobacter aminovorans strain KCTC 2477 plasmid pAA02, complete sequence	18398-18426	8	0.724
NZ_CP043062_4	4.1\|3081341\|29\|NZ_CP043062\|CRISPRCasFinder	3081341-3081369	29	NZ_CP032676	Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence	396287-396315	8	0.724
NZ_CP043062_4	4.1\|3081341\|29\|NZ_CP043062\|CRISPRCasFinder	3081341-3081369	29	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	87037-87065	9	0.69
NZ_CP043062_4	4.1\|3081341\|29\|NZ_CP043062\|CRISPRCasFinder	3081341-3081369	29	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	48029-48057	9	0.69
NZ_CP043062_4	4.1\|3081341\|29\|NZ_CP043062\|CRISPRCasFinder	3081341-3081369	29	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	210011-210039	9	0.69

1. spacer 4.1|3081341|29|NZ_CP043062|CRISPRCasFinder matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 3, identity: 0.897

gccccgcaccctgcgccacgc--ccattcgg	CRISPR spacer
gccccgcaccctgcgccacgccgccaatc--	Protospacer
*********************  *** **

2. spacer 3.1|2769603|28|NZ_CP043062|CRISPRCasFinder matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 6, identity: 0.786

ataccgtcttggcaggccagcgggacgg	CRISPR spacer
cgaccgtcttggcgggcgagcgggacaa	Protospacer
  ***********.*** ********..

3. spacer 3.1|2769603|28|NZ_CP043062|CRISPRCasFinder matches to NZ_CP045303 (Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

ataccgtcttggcaggccagcgggacgg	CRISPR spacer
gcccagtcctggcaggccagcgggatgg	Protospacer
.. * ***.****************.**

4. spacer 4.1|3081341|29|NZ_CP043062|CRISPRCasFinder matches to NZ_AP014706 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence) position: , mismatch: 6, identity: 0.793

gccccgcaccctgcgccacgcccattcgg-	CRISPR spacer
cgcccgcaccctgcgccaggccc-tccgcc	Protospacer
  **************** **** *.**

5. spacer 4.1|3081341|29|NZ_CP043062|CRISPRCasFinder matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 7, identity: 0.759

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
gccccgcgccctgcgtcacgcccagcacc	Protospacer
*******.*******.******** .

6. spacer 4.1|3081341|29|NZ_CP043062|CRISPRCasFinder matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
tggccgcacccagcgccacgcccatggcg	Protospacer
   ******** *************   *

7. spacer 4.1|3081341|29|NZ_CP043062|CRISPRCasFinder matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 7, identity: 0.759

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
cgtccgcaccctgcgccacggccagcccg	Protospacer
  .***************** *** .* *

8. spacer 4.1|3081341|29|NZ_CP043062|CRISPRCasFinder matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 7, identity: 0.759

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
ccgccgcaccctgcgccccgaccatttca	Protospacer
 * ************** ** *****. .

9. spacer 4.1|3081341|29|NZ_CP043062|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 7, identity: 0.759

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
tgcccgcatcctgcgcaacgcccatctcg	Protospacer
  ******.******* ********.. *

10. spacer 4.1|3081341|29|NZ_CP043062|CRISPRCasFinder matches to NZ_CP015007 (Aminobacter aminovorans strain KCTC 2477 plasmid pAA02, complete sequence) position: , mismatch: 8, identity: 0.724

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
cgtacgcgccctgcgccacgcccatgtag	Protospacer
  . ***.***************** ..*

11. spacer 4.1|3081341|29|NZ_CP043062|CRISPRCasFinder matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 8, identity: 0.724

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
tccccgcaccctgtgccacgccacgacca	Protospacer
 ************.********    * .

12. spacer 4.1|3081341|29|NZ_CP043062|CRISPRCasFinder matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 9, identity: 0.69

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
caaccgcaccctgcgcctcgcccacctca	Protospacer
   ************** ******... .

13. spacer 4.1|3081341|29|NZ_CP043062|CRISPRCasFinder matches to NC_005838 (Thermus thermophilus HB27 plasmid pTT27, complete sequence) position: , mismatch: 9, identity: 0.69

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
caaccgcaccctgcgcctcgcccacctca	Protospacer
   ************** ******... .

14. spacer 4.1|3081341|29|NZ_CP043062|CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 9, identity: 0.69

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
caaccgcaccctgcgcctcgcccacctca	Protospacer
   ************** ******... .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1364860 : 1372926

Moraxella_phage(28.57%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003811006.1\|1364860_1365448_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	2.1e-16	46.8
WP_010928878.1\|1365466_1365850_-	thiol reductase thioredoxin	V9SJ74	Achromobacter_phage	1.8e-08	25.8
WP_010928877.1\|1365985_1367011_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_010928876.1\|1367216_1368509_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.9e-65	35.8
WP_010928875.1\|1368643_1369684_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	7.9e-91	51.3
WP_023852762.1\|1369728_1370364_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003811017.1\|1370501_1371260_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.2e-69	51.2
WP_010928874.1\|1371244_1372024_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.8e-32	46.9
WP_010928873.1\|1372041_1372926_+	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	4.6e-15	49.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP043062

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection