CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP045743	Listeria innocua strain CFSAN044836 chromosome, complete genome	0 crisprs	DEDDh,cas3,WYL,casR,DinG,csa3	0	0	6	0
NZ_CP045744	Listeria innocua strain CFSAN044836 plasmid pCFSAN044836, complete sequence	0 crisprs	cas5,csa3	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

368846 : 386372

Streptococcus_phage(100.0%)

integrase

attL 363441:363456|attR 387248:387263

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
363441:363456	attL	NA	NA	NA	NA
WP_001291561.1\|368846_370064_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
WP_000814511.1\|370145_370349_-	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
WP_000857133.1\|370809_371040_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_000804885.1\|371036_371459_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
WP_001227347.1\|371963_372317_+	helix-turn-helix transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_000336323.1\|372376_372544_-	conjugal transfer protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_000691736.1\|372662_374582_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	99.5
WP_001791010.1\|374597_374714_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_001224320.1\|374958_375894_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	7.7e-170	99.0
WP_000769868.1\|375890_376892_-	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
WP_000804748.1\|376888_379066_-	membrane protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
WP_000331160.1\|379068_381516_-	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
WP_000506270.1\|381499_382006_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000342539.1\|381980_382478_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_001009056.1\|382594_382816_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_000398284.1\|382858_384064_-	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
WP_000879507.1\|384086_384239_-	hypothetical protein	NA	NA	NA	NA
WP_000813488.1\|384241_385627_-	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
WP_000985015.1\|385655_386042_-	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
WP_000420682.1\|386057_386372_-	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
387248:387263	attR	NA	NA	NA	NA

DBSCAN-SWA_2

403885 : 470324

Streptococcus_phage(15.0%)

integrase,protease,tRNA

attL 431582:431598|attR 463618:463634

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033533071.1\|403885_405592_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_003771665.1\|405631_406894_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_003762042.1\|406907_408050_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003762041.1\|408064_408853_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_033838142.1\|408866_409625_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	1.1e-22	40.6
WP_003771660.1\|409854_410412_-	ribosome recycling factor	NA	NA	NA	NA
WP_003723449.1\|410411_411140_-	UMP kinase	NA	NA	NA	NA
WP_003762030.1\|411451_411853_+	hypothetical protein	NA	NA	NA	NA
WP_077904834.1\|411803_413009_+	helicase SNF2	L0P6E9	Lactobacillus_phage	7.8e-90	46.4
WP_003762027.1\|412998_414303_+	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	2.5e-134	52.3
WP_045554129.1\|414312_414819_+	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	1.7e-54	62.8
WP_153648153.1\|414841_415573_+	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	3.1e-81	58.8
WP_003723442.1\|415623_415863_-	YneF family protein	NA	NA	NA	NA
WP_010991490.1\|416085_418080_-	transketolase	NA	NA	NA	NA
WP_003771647.1\|418226_418454_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_153648154.1\|418534_418876_-	cell division suppressor protein YneA	NA	NA	NA	NA
WP_003762009.1\|419033_419648_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_153648155.1\|419677_420199_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010990934.1\|420232_421528_-	arsenic transporter	A0A2H4PQU3	Staphylococcus_phage	5.0e-151	63.5
WP_003762004.1\|421670_423005_-	type I glutamate--ammonia ligase	A0A1V0SJ53	Klosneuvirus	1.0e-05	29.2
WP_003719570.1\|423075_423444_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_153648156.1\|423645_424872_-	hypothetical protein	NA	NA	NA	NA
WP_003771634.1\|424864_426088_-	GTPase HflX	NA	NA	NA	NA
WP_003719566.1\|426195_426429_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_153648157.1\|426550_427468_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_033533077.1\|427592_429269_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_033533078.1\|429492_430200_-	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	1.4e-09	49.3
WP_010990928.1\|430408_432310_+	acetyltransferase	B5WZU0	Pseudomonas_phage	6.6e-43	32.8
431582:431598	attL	NA	NA	NA	NA
WP_153648158.1\|432417_434280_-	LapB repeat-containing protein	NA	NA	NA	NA
WP_153648795.1\|434631_435099_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_153648159.1\|435179_437636_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	3.0e-104	33.0
WP_045553001.1\|437632_439600_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	1.8e-123	42.5
WP_003761982.1\|439775_440186_-	CoA-binding protein	NA	NA	NA	NA
WP_003761980.1\|440343_440940_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_070753236.1\|440982_441855_-	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003761975.1\|441857_442169_-	hypothetical protein	NA	NA	NA	NA
WP_003761973.1\|442191_442611_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003747412.1\|442713_443493_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_153648160.1\|443513_444923_-\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	5.8e-44	27.8
WP_003761964.1\|444936_445476_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_153648161.1\|445497_446400_-	tyrosine recombinase XerC	A0A097EYL9	Mycobacterium_phage	5.2e-14	28.8
WP_033533085.1\|446683_447988_-\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_003766673.1\|448051_450130_-	type I DNA topoisomerase	A0A1V0SB35	Catovirus	4.1e-107	37.7
WP_153648162.1\|450399_451260_-	DNA-protecting protein DprA	NA	NA	NA	NA
WP_045554118.1\|451394_452180_-	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	4.4e-25	39.2
WP_153648163.1\|452176_453043_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_153648164.1\|453130_454387_-\|integrase	tyrosine-type recombinase/integrase	Q9AZK8	Lactococcus_phage	3.5e-16	25.3
WP_153648165.1\|454468_454717_-	DNA-binding protein	Q9AZF3	Lactococcus_phage	7.0e-14	49.3
WP_153648166.1\|457319_457724_-	hypothetical protein	NA	NA	NA	NA
WP_153648167.1\|457928_458657_-	hypothetical protein	NA	NA	NA	NA
WP_153648168.1\|458658_460926_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_153648169.1\|460922_462704_-	site-specific DNA-methyltransferase	A0A2K5B255	Erysipelothrix_phage	1.2e-33	27.1
WP_003771599.1\|463136_463679_-	type I signal peptidase SipZ	NA	NA	NA	NA
463618:463634	attR	NA	NA	NA	NA
WP_003761950.1\|463781_464351_-	type I signal peptidase SipY	NA	NA	NA	NA
WP_003771597.1\|464386_464953_-	type I signal peptidase SipX	NA	NA	NA	NA
WP_003766662.1\|465072_466332_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.0e-145	62.9
WP_003771581.1\|466517_467801_-	trigger factor	NA	NA	NA	NA
WP_003771578.1\|467915_468854_-	hypothetical protein	NA	NA	NA	NA
WP_153648170.1\|469109_469775_-	hypothetical protein	NA	NA	NA	NA
WP_153648171.1\|469790_470324_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_3

1558250 : 1570329

Listeria_phage(44.44%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_070752029.1\|1558250_1559387_-	hypothetical protein	A8ATA9	Listeria_phage	1.4e-53	29.3
WP_010990247.1\|1559396_1560215_-\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	1.8e-37	34.9
WP_045553689.1\|1560211_1562080_-	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	1.3e-19	51.6
WP_153648487.1\|1562066_1562507_-	phenylalanine racemase	NA	NA	NA	NA
WP_003759832.1\|1562512_1562815_-	hypothetical protein	NA	NA	NA	NA
WP_003759830.1\|1562862_1563375_-\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	63.4
WP_010990245.1\|1563387_1563777_-	DUF5072 family protein	NA	NA	NA	NA
WP_153648488.1\|1564056_1564473_-	hypothetical protein	A8ASQ1	Listeria_phage	1.7e-20	38.6
WP_010990243.1\|1564484_1564913_-	hypothetical protein	A8ATZ8	Listeria_phage	2.1e-13	46.9
WP_003764864.1\|1565129_1565465_+	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	2.3e-20	52.5
WP_112120332.1\|1565470_1565923_+	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	8.9e-31	45.8
WP_010990242.1\|1566097_1566793_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_010990241.1\|1566762_1567461_-	EAL domain-containing protein	NA	NA	NA	NA
WP_003772584.1\|1567610_1568444_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_033838291.1\|1568586_1570329_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.6e-56	30.7

DBSCAN-SWA_4

2042812 : 2050656

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_070023918.1\|2042812_2043772_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	1.5e-88	54.1
WP_153648824.1\|2043887_2044871_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.1e-52	38.4
WP_153648591.1\|2044886_2045948_+	galactose-1-epimerase	NA	NA	NA	NA
WP_153648592.1\|2045992_2047723_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.2e-171	52.6
WP_003763899.1\|2047831_2048707_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	4.9e-09	30.5
WP_003768284.1\|2048708_2049677_+	YvcK family protein	A1IMD5	Streptococcus_phage	1.1e-67	42.9
WP_003768282.1\|2049684_2050656_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4

DBSCAN-SWA_5

2197486 : 2239505

Listeria_phage(92.86%)

holin,plate,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003749261.1\|2197486_2197834_+	helix-turn-helix transcriptional regulator	A0A0A7RTK4	Clostridium_phage	9.9e-06	40.7
WP_153648626.1\|2197881_2198349_-	competence protein ComK	NA	NA	NA	NA
WP_003725104.1\|2198339_2199698_-	recombinase family protein	Q9T193	Listeria_phage	4.7e-253	97.3
WP_003725103.1\|2199779_2200667_-	hypothetical protein	A0A0B5CYL8	Listeria_phage	1.1e-160	99.7
WP_003725102.1\|2200890_2201598_-	hypothetical protein	A0A0B5CTT6	Listeria_phage	4.8e-116	93.6
WP_020830685.1\|2201659_2202265_-	hypothetical protein	NA	NA	NA	NA
WP_003725101.1\|2202279_2202498_-	zinc ribbon domain-containing protein	A0A059T6E3	Listeria_phage	2.3e-32	95.8
WP_003725100.1\|2202520_2203012_-	hypothetical protein	A8ATX4	Listeria_phage	7.0e-90	98.2
WP_003725099.1\|2203042_2203351_-	helix-turn-helix transcriptional regulator	A8ATX5	Listeria_phage	1.6e-47	99.0
WP_003725098.1\|2203499_2203769_+	helix-turn-helix transcriptional regulator	A8ATX6	Listeria_phage	3.9e-34	86.5
WP_003725144.1\|2203773_2203959_+	hypothetical protein	NA	NA	NA	NA
WP_020830686.1\|2203918_2204182_-	hypothetical protein	NA	NA	NA	NA
WP_003725140.1\|2204196_2204430_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003741072.1\|2204576_2204795_+	helix-turn-helix transcriptional regulator	A0A1U9WQN6	Geobacillus_phage	1.2e-06	44.0
WP_003725143.1\|2204991_2205294_+	hypothetical protein	NA	NA	NA	NA
WP_031645250.1\|2205467_2205662_+	hypothetical protein	A0A059T6E5	Listeria_phage	2.5e-22	89.1
WP_153648627.1\|2205673_2205955_+	hypothetical protein	Q9T180	Listeria_phage	3.7e-35	89.2
WP_003725092.1\|2206154_2206358_-	KTSC domain-containing protein	A0A1S5S8T9	Streptococcus_phage	2.0e-14	56.7
WP_061385619.1\|2206421_2207210_+	antirepressor	Q9T178	Listeria_phage	1.0e-135	93.5
WP_153648628.1\|2207331_2207865_+	hypothetical protein	A8ASM7	Listeria_phage	7.9e-79	89.0
WP_023552473.1\|2207861_2208077_+	hypothetical protein	Q9T176	Listeria_phage	5.7e-28	91.5
WP_010989962.1\|2208184_2208373_+	hypothetical protein	Q9T175	Listeria_phage	2.0e-21	79.0
WP_010991174.1\|2208605_2209565_+	YqaJ viral recombinase family protein	A8ATY5	Listeria_phage	1.3e-177	99.4
WP_061729903.1\|2209564_2210380_+	recombinase RecT	A8ATY6	Listeria_phage	1.2e-147	97.0
WP_153648629.1\|2210399_2211329_+	DnaD domain protein	A8ATY7	Listeria_phage	1.5e-157	94.5
WP_009932913.1\|2211325_2211427_+	hypothetical protein	NA	NA	NA	NA
WP_061112825.1\|2211410_2212019_+	hypothetical protein	A8ATU1	Listeria_phage	8.2e-56	49.5
WP_061112824.1\|2212030_2212576_+	DUF1642 domain-containing protein	A8ATD8	Listeria_phage	4.6e-34	45.4
WP_061112823.1\|2212572_2212839_+	hypothetical protein	R4IBL5	Listeria_phage	1.2e-35	89.5
WP_162007589.1\|2212858_2213092_+	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	1.2e-15	68.5
WP_031674202.1\|2213108_2213423_+	hypothetical protein	NA	NA	NA	NA
WP_023553777.1\|2213528_2213741_+	hypothetical protein	NA	NA	NA	NA
WP_003733707.1\|2213763_2214258_+	hypothetical protein	A0A1S5SDR7	Streptococcus_phage	6.1e-33	47.6
WP_003733708.1\|2214262_2214475_+	hypothetical protein	NA	NA	NA	NA
WP_153648630.1\|2214475_2214958_+	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	2.6e-73	86.9
WP_003725078.1\|2214977_2215283_+	hypothetical protein	A8ATZ8	Listeria_phage	1.2e-26	63.4
WP_009930874.1\|2215279_2215420_+	BH0509 family protein	A8ATZ9	Listeria_phage	1.4e-14	84.8
WP_003725077.1\|2215385_2215790_+	hypothetical protein	A8AU00	Listeria_phage	3.8e-65	90.3
WP_003734997.1\|2215930_2216086_+	hypothetical protein	A0A0B5D186	Listeria_phage	7.5e-22	96.1
WP_003725075.1\|2216173_2216746_+	sigma-70 family RNA polymerase sigma factor	A0A0B5CTZ3	Listeria_phage	5.5e-86	83.2
WP_096811311.1\|2217006_2217234_+	hypothetical protein	A0A0B5CTV3	Listeria_phage	1.8e-32	94.7
WP_003733714.1\|2217273_2218014_+	hypothetical protein	A8ATU5	Listeria_phage	7.0e-134	98.8
WP_010991159.1\|2218006_2219326_+\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	7.1e-254	94.3
WP_153648631.1\|2219340_2220900_+	hypothetical protein	A8ATU7	Listeria_phage	2.7e-292	96.9
WP_003719493.1\|2220904_2221948_+	gp4	A0A0B5D111	Listeria_phage	9.7e-198	98.3
WP_153648632.1\|2222043_2222598_+	hypothetical protein	A8ATU9	Listeria_phage	3.9e-81	91.3
WP_003723787.1\|2222620_2223493_+	hypothetical protein	A0A0B5CTX8	Listeria_phage	2.3e-152	93.8
WP_003723785.1\|2223662_2224016_+	hypothetical protein	A8ATV2	Listeria_phage	8.4e-61	99.1
WP_026750199.1\|2224015_2224381_+	hypothetical protein	A8ATV3	Listeria_phage	2.1e-62	95.0
WP_080147573.1\|2224370_2224688_+	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	9.5e-48	92.4
WP_003740885.1\|2224684_2225089_+	hypothetical protein	A8ATV5	Listeria_phage	1.2e-63	99.2
WP_003723782.1\|2225060_2225492_+	Ig domain-containing protein	A0A0B5CYK8	Listeria_phage	8.1e-58	82.9
WP_041197790.1\|2225514_2225754_+	hypothetical protein	A8ASK3	Listeria_phage	4.0e-30	88.6
WP_020830700.1\|2225802_2226234_+	hypothetical protein	A8ATV7	Listeria_phage	7.8e-69	94.4
WP_153648633.1\|2226230_2226542_+	hypothetical protein	A0A0B5D116	Listeria_phage	1.9e-40	94.5
WP_031642352.1\|2226546_2231349_+\|tail	phage tail tape measure protein	A0A0B5CTS6	Listeria_phage	0.0e+00	87.0
WP_031642356.1\|2231352_2232177_+\|tail	phage tail family protein	A0A0B5CTY7	Listeria_phage	4.3e-156	98.2
WP_031642358.1\|2232189_2233203_+	hypothetical protein	A0A0B5CYL4	Listeria_phage	4.4e-187	99.4
WP_070213810.1\|2233199_2234228_+	hypothetical protein	A0A0B5D0C2	Listeria_phage	1.1e-166	86.5
WP_153648634.1\|2234224_2235292_+\|plate	BppU family phage baseplate upper protein	A0A0B5CTW3	Listeria_phage	1.4e-183	93.8
WP_031642362.1\|2235288_2235630_+	hypothetical protein	A8ASL1	Listeria_phage	1.5e-54	93.8
WP_003740843.1\|2235630_2235777_+	XkdX family protein	A0A0B5CYN8	Listeria_phage	1.5e-19	100.0
WP_003733957.1\|2235817_2236123_+	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
WP_020830702.1\|2236122_2236404_+\|holin	phage holin	A0A059T664	Listeria_phage	5.1e-45	98.9
WP_003740832.1\|2236403_2237273_+	N-acetylmuramoyl-L-alanine amidase family protein	A8ASL5	Listeria_phage	7.1e-170	98.3
WP_003725050.1\|2237396_2238197_+	hypothetical protein	NA	NA	NA	NA
WP_003725049.1\|2238198_2239023_+	DUF3037 domain-containing protein	NA	NA	NA	NA
WP_003725136.1\|2239271_2239505_+	hypothetical protein	A8ATC5	Listeria_phage	1.2e-34	92.2

DBSCAN-SWA_6

2756575 : 2764858

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_153648764.1\|2756575_2757868_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.1e-17	32.8
WP_003762857.1\|2757948_2758662_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	9.4e-43	39.6
WP_003722248.1\|2758673_2758919_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_153648765.1\|2758922_2759606_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003769069.1\|2759598_2761818_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.2e-159	41.0
WP_003762854.1\|2761802_2763230_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.2e-54	34.6
WP_003769067.1\|2763248_2764295_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.1e-60	42.9
WP_153648766.1\|2764291_2764858_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	6.3e-26	39.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP045744

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 7725

Paenibacillus_phage(25.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728504.1\|686_1031_-	hypothetical protein	NA	NA	NA	NA
WP_003728505.1\|1235_1970_-	AAA family ATPase	NA	NA	NA	NA
WP_013315188.1\|2144_3485_-\|transposase	IS3 family transposase	A0A0C5AC89	Paenibacillus_phage	1.1e-31	38.6
WP_003728507.1\|3760_5875_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	3.4e-117	39.1
WP_003728509.1\|6302_6539_-	helix-turn-helix transcriptional regulator	A0A097PBE6	Streptococcus_pyogenes_phage	6.7e-14	53.4
WP_003731679.1\|6501_6780_+	hypothetical protein	NA	NA	NA	NA
WP_003728510.1\|6899_7127_-	hypothetical protein	NA	NA	NA	NA
WP_003728511.1\|7116_7725_-	recombinase family protein	A0A1W5LU24	Ralstonia_phage	1.0e-21	42.9

DBSCAN-SWA_2

11054 : 28146

Lactobacillus_phage(27.27%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728514.1\|11054_11309_+\|transposase	transposase	Q6J1X3	Lactobacillus_phage	1.6e-13	46.4
WP_115914824.1\|11305_12193_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	7.3e-69	51.1
WP_003731678.1\|12282_12999_-	AP2 domain-containing protein	O03945	Lactobacillus_phage	3.8e-20	31.0
WP_003728517.1\|13014_13737_-	CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_003728518.1\|13740_14166_-	hypothetical protein	NA	NA	NA	NA
WP_003728519.1\|14166_14415_-	hypothetical protein	NA	NA	NA	NA
WP_003728520.1\|14536_15025_-	hypothetical protein	NA	NA	NA	NA
WP_003728521.1\|15183_15567_-	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	2.2e-14	53.4
WP_003731676.1\|15579_16242_-	DUF2786 domain-containing protein	NA	NA	NA	NA
WP_003728462.1\|16241_16568_-	hypothetical protein	A0A2K9V3N4	Faecalibacterium_phage	3.2e-06	40.8
WP_003728463.1\|16698_16950_+	hypothetical protein	NA	NA	NA	NA
WP_003728464.1\|17010_17253_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_003728465.1\|17246_17588_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_003728466.1\|17780_19916_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.6e-247	64.5
WP_003728467.1\|19915_20275_-	Cd(II)-sensing metalloregulatory transcriptional repressor CadC	E4ZFI8	Streptococcus_phage	3.1e-26	50.0
WP_045554658.1\|20554_21109_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	5.4e-38	46.1
WP_003728469.1\|21112_24028_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.9e-174	36.7
WP_031644889.1\|25210_27367_-	copper-translocating P-type ATPase CopB	A0A218MNH6	uncultured_virus	1.1e-70	31.0
WP_003728472.1\|27582_28146_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	2.0e-40	51.1

DBSCAN-SWA_3

31938 : 34583

Streptococcus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043993356.1\|31938_32580_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	3.0e-101	83.6
WP_003728476.1\|32699_34583_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.6e-87	35.3

DBSCAN-SWA_4

37795 : 44889

Erysipelothrix_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728481.1\|37795_39160_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.9e-07	23.5
WP_002389568.1\|39783_40464_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	2.6e-119	90.7
WP_072235488.1\|41029_41437_-	hypothetical protein	H2DE57	Erwinia_phage	1.4e-11	46.0
WP_012952173.1\|41478_41823_-	TnpV protein	NA	NA	NA	NA
WP_011011011.1\|42535_42934_-	hypothetical protein	NA	NA	NA	NA
WP_003728486.1\|43107_43443_+	helix-turn-helix transcriptional regulator	A0A139ZPK3	Marinitoga_camini_virus	2.8e-05	35.0
WP_012952172.1\|44124_44889_-	Fic family protein	A0A0G3Y4Q5	Ostreid_herpesvirus	2.6e-06	29.4

DBSCAN-SWA_5

49563 : 52235

Lactococcus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728496.1\|49563_50790_+\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	4.7e-135	60.6
WP_003755398.1\|50758_51556_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	3.3e-81	63.2
WP_023553716.1\|51647_52235_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.5e-33	41.7

DBSCAN-SWA_6

55672 : 56647

Enterococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728501.1\|55672_56647_+	AAA family ATPase	F0PIG8	Enterococcus_phage	2.4e-33	35.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045743

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP045744

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection