CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP045761	Salmonella enterica subsp. houtenae str. CFSAN000552 strain SGSC 3086 isolate SARC10 chromosome, complete genome	3 crisprs	csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	6	11	6	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045761_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045761_1

630305-631554

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
GGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

20 spacers

The CRISPR arrays of NZ_CP045761_1

>merge|NZ_CP045761|1|630305-631554|CRISPRCasFinder,CRT,PILER-CR
ACGTTTATCCCCGCTGGCGCGGGGAACTCGGAGGAAAGAGCTCGGGTACACACAGCAGAAACGGTTTATCCCCGCTGGCGCGGGGAACTCGCCTGATACCAGCAGGTAAACGCCTCATCGAGCCGGTTTATCCCCGCTGGCGCGGGGAACTCATCTCCGCGCCATGATCATTAGCGAGATCCAACGGTTTATCCCCGCTGGCGCGGGGAACTCGAATGGCCGAGTGTGAATCCTGGGTTAAATACCGGTTTATCCCCGCTGGCGCGGGGAACTCGTTAACGAATCAAACCCCGTCCAGCCGTATTGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGCTGGCGGCGGTTATCGCTCTGTTCAATTCTGGTTTATCCCCGCTGGCGCGGGGAACTCAGAAATCGCGCAAGCGTCTGGCGACGTGTGACCGGTTTATCCCCGCTGGCGCGGGGAACTCCGATGCGGTTGCAAATGGCATCTGGCGGCGCACGGTTTATCCCCGCTGGCGCGGGGAACTCACAAAATTTTAACAACGCCAGCAACTCATGTTCGGTTTATCCCCGCTGGCGCGGGGAACTCCCGTATCCCCAAGGTCAACCATCTCCGCACTCCGGTTTATCCCCGCTGGCGCGGGGAACTCCACTGGATAACATTTAGTTTCCAATATAAGCACGGTTTATCCCCGCTGGCGCGGGGAACTCATCATCACCCGCCCAATATTTTTGGAGCTGGGCGGTTTATCCCCGCTGGCGCGGGGAACTCGTCAGCATGGCATCGGCAATATCGCCATAGCGCGGTTTATCCCCGCTGGCGCGGGGAACTCTTTTCTGAAAGCGTCGCACCAAGAGCCACGGCCGGTTTATCCCCGCTGGCGCGGGGAACTCTCAGGCCACTCGCGCTGTTTATTCACCGCCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCATGGGGCGCGACGTTCCAGATGCCCCACTTTACGGTTTATCCCCGCTGGCGCGGGGAACTCTTTTTCTGGCGGTCATTAGCCGCGTTAATCTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTTGCTTTCGCCTGCGCTGCGGTTGAGCGTGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCATGACACCGTTATCGATGGGCCACTCACCATCCGGTTTATCCCCGCTGGCGCGGGGAACTCATATCCACGGCGCGCGTATCCTGGCGATGCTGGGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP045761|1|1|630305-631554|CRISPRCasFinder
ACGTTTATCCCCGCTGGCGCGGGGAACTC	GGAGGAAAGAGCTCGGGTACACACAGCAGAAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCTGATACCAGCAGGTAAACGCCTCATCGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATCTCCGCGCCATGATCATTAGCGAGATCCAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GAATGGCCGAGTGTGAATCCTGGGTTAAATAC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GTTAACGAATCAAACCCCGTCCAGCCGTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGCTGGCGGCGGTTATCGCTCTGTTCAATTC
TGGTTTATCCCCGCTGGCGCGGGGAACTC	AGAAATCGCGCAAGCGTCTGGCGACGTGTGAC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CGATGCGGTTGCAAATGGCATCTGGCGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACAAAATTTTAACAACGCCAGCAACTCATGTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CCGTATCCCCAAGGTCAACCATCTCCGCACTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CACTGGATAACATTTAGTTTCCAATATAAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATCATCACCCGCCCAATATTTTTGGAGCTGGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GTCAGCATGGCATCGGCAATATCGCCATAGCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTTTCTGAAAGCGTCGCACCAAGAGCCACGGC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCAGGCCACTCGCGCTGTTTATTCACCGCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATGGGGCGCGACGTTCCAGATGCCCCACTTTA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTTTTCTGGCGGTCATTAGCCGCGTTAATCTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTGCTTTCGCCTGCGCTGCGGTTGAGCGTGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATGACACCGTTATCGATGGGCCACTCACCATC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATATCCACGGCGCGCGTATCCTGGCGATGCTG
GGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP045761|1|1|630305-631554|CRT
ACGTTTATCCCCGCTGGCGCGGGGAACTC	GGAGGAAAGAGCTCGGGTACACACAGCAGAAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCTGATACCAGCAGGTAAACGCCTCATCGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATCTCCGCGCCATGATCATTAGCGAGATCCAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GAATGGCCGAGTGTGAATCCTGGGTTAAATAC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GTTAACGAATCAAACCCCGTCCAGCCGTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGCTGGCGGCGGTTATCGCTCTGTTCAATTC
TGGTTTATCCCCGCTGGCGCGGGGAACTC	AGAAATCGCGCAAGCGTCTGGCGACGTGTGAC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CGATGCGGTTGCAAATGGCATCTGGCGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACAAAATTTTAACAACGCCAGCAACTCATGTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CCGTATCCCCAAGGTCAACCATCTCCGCACTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CACTGGATAACATTTAGTTTCCAATATAAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATCATCACCCGCCCAATATTTTTGGAGCTGGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GTCAGCATGGCATCGGCAATATCGCCATAGCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTTTCTGAAAGCGTCGCACCAAGAGCCACGGC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCAGGCCACTCGCGCTGTTTATTCACCGCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATGGGGCGCGACGTTCCAGATGCCCCACTTTA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTTTTCTGGCGGTCATTAGCCGCGTTAATCTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTGCTTTCGCCTGCGCTGCGGTTGAGCGTGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATGACACCGTTATCGATGGGCCACTCACCATC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATATCCACGGCGCGCGTATCCTGGCGATGCTG
GGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP045761|1|1|630307-631554|PILER-CR
GTTTATCCCCGCTGGCGCGGGGAACTCG	GAGGAAAGAGCTCGGGTACACACAGCAGAAACG
GTTTATCCCCGCTGGCGCGGGGAACTCG	CCTGATACCAGCAGGTAAACGCCTCATCGAGCCG
GTTTATCCCCGCTGGCGCGGGGAACTCA	TCTCCGCGCCATGATCATTAGCGAGATCCAACG
GTTTATCCCCGCTGGCGCGGGGAACTCG	AATGGCCGAGTGTGAATCCTGGGTTAAATACCG
GTTTATCCCCGCTGGCGCGGGGAACTCG	TTAACGAATCAAACCCCGTCCAGCCGTATTGCG
GTTTATCCCCGCTGGCGCGGGGAACTCG	CGCTGGCGGCGGTTATCGCTCTGTTCAATTCTG
GTTTATCCCCGCTGGCGCGGGGAACTCA	GAAATCGCGCAAGCGTCTGGCGACGTGTGACCG
GTTTATCCCCGCTGGCGCGGGGAACTCC	GATGCGGTTGCAAATGGCATCTGGCGGCGCACG
GTTTATCCCCGCTGGCGCGGGGAACTCA	CAAAATTTTAACAACGCCAGCAACTCATGTTCG
GTTTATCCCCGCTGGCGCGGGGAACTCC	CGTATCCCCAAGGTCAACCATCTCCGCACTCCG
GTTTATCCCCGCTGGCGCGGGGAACTCC	ACTGGATAACATTTAGTTTCCAATATAAGCACG
GTTTATCCCCGCTGGCGCGGGGAACTCA	TCATCACCCGCCCAATATTTTTGGAGCTGGGCG
GTTTATCCCCGCTGGCGCGGGGAACTCG	TCAGCATGGCATCGGCAATATCGCCATAGCGCG
GTTTATCCCCGCTGGCGCGGGGAACTCT	TTTCTGAAAGCGTCGCACCAAGAGCCACGGCCG
GTTTATCCCCGCTGGCGCGGGGAACTCT	CAGGCCACTCGCGCTGTTTATTCACCGCCAGCG
GTTTATCCCCGCTGGCGCGGGGAACTCA	TGGGGCGCGACGTTCCAGATGCCCCACTTTACG
GTTTATCCCCGCTGGCGCGGGGAACTCT	TTTTCTGGCGGTCATTAGCCGCGTTAATCTCCG
GTTTATCCCCGCTGGCGCGGGGAACTCT	TGCTTTCGCCTGCGCTGCGGTTGAGCGTGTCCG
GTTTATCCCCGCTGGCGCGGGGAACTCA	TGACACCGTTATCGATGGGCCACTCACCATCCG
GTTTATCCCCGCTGGCGCGGGGAACTCA	TATCCACGGCGCGCGTATCCTGGCGATGCTGGG
GTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045761.1\|WP_002954385.1\|624437_625148_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP045761.1\|WP_002954396.1\|637049_638849_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP045761.1\|WP_000372384.1\|628083_628992_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP045761.1\|WP_002954388.1\|626634_628074_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP045761.1\|WP_001199953.1\|639594_640266_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP045761.1\|WP_002954384.1\|622912_623962_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP045761.1\|WP_002954386.1\|625668_625992_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP045761.1\|WP_024139415.1\|626042_626648_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP045761.1\|WP_000340780.1\|640391_640706_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045761.1\|WP_002954395.1\|635337_637050_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP045761.1\|WP_001219241.1\|623958_624438_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP045761.1\|WP_000517480.1\|625166_625478_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP045761.1\|WP_000490494.1\|629243_630290_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP045761.1\|WP_001221536.1\|622170_622932_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP045761.1\|WP_002954399.1\|641960_642143_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045761.1\|WP_000987945.1\|639151_639517_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP045761.1\|WP_002954393.1\|633475_634429_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP045761.1\|WP_002954398.1\|641200_641926_-\|DUF4225-domain-containing-protein	unknown	unknown	gnl\|CDD\|372865
NZ_CP045761.1\|WP_002954397.1\|640811_641138_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045761.1\|WP_002954394.1\|634518_635253_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
NZ_CP045761.1\|WP_002954385.1\|624437_625148_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	7.91858e-118
NZ_CP045761.1\|WP_002954396.1\|637049_638849_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP045761.1\|WP_000372384.1\|628083_628992_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP045761.1\|WP_002954388.1\|626634_628074_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP045761.1\|WP_001199953.1\|639594_640266_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	4.81131e-156
NZ_CP045761.1\|WP_002954384.1\|622912_623962_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP045761.1\|WP_002954386.1\|625668_625992_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	5.42864e-48
NZ_CP045761.1\|WP_024139415.1\|626042_626648_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.06579e-143
NZ_CP045761.1\|WP_002954395.1\|635337_637050_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP045761.1\|WP_001219241.1\|623958_624438_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.77176e-104
NZ_CP045761.1\|WP_000517480.1\|625166_625478_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP045761.1\|WP_000490494.1\|629243_630290_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP045761.1\|WP_001221536.1\|622170_622932_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	6.02604e-147
NZ_CP045761.1\|WP_000987945.1\|639151_639517_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	4.27114e-59
NZ_CP045761.1\|WP_002954393.1\|633475_634429_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP045761.1\|WP_002954398.1\|641200_641926_-\|DUF4225-domain-containing-protein	gnl\|CDD\|372865	pfam13988, DUF4225, Protein of unknown function (DUF4225). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 182 and 282 amino acids in length.	2.90705e-36
NZ_CP045761.1\|WP_002954394.1\|634518_635253_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	3.3731e-138

>NZ_CP045761.1|WP_000490494.1|629243_630290_+|aminopeptidase
MFSATRRFTVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTRMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYDIAANTNPGRNPSYPKGTGCCNDAEVFDKAGMSVLSVEATNWNLGKKDGYQQRMKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP045761.1|WP_000372384.1|628083_628992_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP045761.1|WP_002954388.1|626634_628074_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGSLASGSVNVGERIKVLPSGVESSVARIVTFDGDKEEAYAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQNYDVKLAGKKTRARIETIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELVERGVAPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP045761.1|WP_024139415.1|626042_626648_-|adenylyl-sulfate-kinase
MARHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIILTAFISPHRAERQLVQDRVGHDRFIEIYIDTPLAICEQRDPKGLYKKARAGELRHFTGIDAIYEAPESPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP045761.1|WP_002954386.1|625668_625992_-|DUF3561-family-protein
MRNSHNITFTRSDAFIVDDDTTSSLPGAVVGFMSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKMLFSIMFTLLAVGALFGALFIWLLG
>NZ_CP045761.1|WP_000517480.1|625166_625478_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP045761.1|WP_002954385.1|624437_625148_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLRAVAEAPWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKTAIAHTVERADLWHALTPQFFPRELLHDCLTRALHEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP045761.1|WP_001219241.1|623958_624438_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRIFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP045761.1|WP_002954384.1|622912_623962_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSDAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALTFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP045761.1|WP_001221536.1|622170_622932_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP045761.1|WP_002954393.1|633475_634429_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLNFGNHHNYTLNESRLSHLLSADKEKATRMGSWDKLQDHFRSERKDHALEVLYSIIHGQGRGEPGEMEVNIEDMGKIYAFKKLQHLACPAHQDLFKIKMDASQTQFLFMVGDTVISQSRIQDILNLSDNVVVESMNSEEKQLFLQICEIIGSNIAWHPELLQASVSTLRKEVTSNVQIKEAVYGLVRPAEAPDHQFVEWQSSLSDDEKSMLTCINAGNFDPITQFCKIGYQEVQGEVAFCMMHPCISYLLHTYSPFAEFKETNAGFLNKLNQDYKDYHKNKVFIDAILEKIYLTHERSLHIGENECSRNILLA
>NZ_CP045761.1|WP_002954394.1|634518_635253_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVERVLALAEINAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQISPDIPVILTDTGYLFPETYQFIDELTDKLNLNLKVYRAKESAAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALEELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKQGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP045761.1|WP_002954395.1|635337_637050_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFHGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQKKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESQKAKIEKLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP045761.1|WP_002954396.1|637049_638849_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQAPPSALFPLNPEQLARLQAATTDLTPAQLAWVSGYFWGVLNHQPGANATVPAPAVEMPGITLISASQTGNARRVAETLRDDLIAAKLNVTLINAGDYKFKQIANEKLLVVVASTQGEGEPAEEAVALHKFLLSKKAPKLDNTAFAVFGLGDTSYEFFCQAGKDFDSRLAELGGERLLDRVDADVEYQAAAAEWRARLVEVLKARAPAAPSVQAAASGAVNDVHSSPYTKEAPLTATLAVNQKITGRESEKDVRHIEIDLGDAGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDADALIGLLRPLTPRLYSIASSQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGDVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDIEAADEFLSEMRVERRYQRDVY
>NZ_CP045761.1|WP_000987945.1|639151_639517_+|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGQ
>NZ_CP045761.1|WP_001199953.1|639594_640266_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLYSILAKTKESDKWGAASSEDLLAVIQRQGYTARHVVITGGEPCIHDLMPLTSLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYNVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKLRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP045761.1|WP_000340780.1|640391_640706_-|hypothetical-protein
MDDDIKKILVNAGMKEKNVRFLLKLAAKKNISVSRAFLLYAWKYYAWGGALFFSMLFPATMGGFELFIIYILCCLALALISVFFNPFFINLVWSIKVQIKLRGK
>NZ_CP045761.1|WP_002954397.1|640811_641138_-|hypothetical-protein
MESQITVEKLVALGLTEYKAEHLIKFAQDENLSLQKAYYESHCRIFRADMALLSVFLFFFVSILIGGDRDGLFVLLFLALLYGAGELCFRFHKGYWERLKIYCALKKL
>NZ_CP045761.1|WP_002954398.1|641200_641926_-|DUF4225-domain-containing-protein
MSSYGVMSLQREKEKIDQLVFDIGFQYLHDPAMRSKYMIEERRVTSRYLDEYRYGKLDFGRSIDRLREYHMSLTKYHMQLRMGSIKLYAIAQKERNSTSLTTLSLKGVGFASGLFQILGGIGFCVKDIRSACGKFGVPLIIQGGENSYENGYYLFTHKEPTDIPIRHAYRYIAKLLGGDDKTGDIAFSSVDIALSVGSLGRLTHIDGARKLFYSIREDFIRGWRAMGVAGIGTELVGDASS
>NZ_CP045761.1|WP_002954399.1|641960_642143_-|hypothetical-protein
MDNELEEILAKAGMKKKDSVILIKLAEKKNISLGRAFFLYACSSCFTLLYAVCHKFDLEC

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Crispr_ID: NZ_CP045761_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045761_2

3457453-3458077

Orphan

Consensus_repeat	Method
TAACCNNCTGACCAGCCTGCCGGCG	CRT

10 spacers

The CRISPR arrays of NZ_CP045761_2

>merge|NZ_CP045761|2|3457453-3458077|CRT
TAATAATCTAACCAGCCTGCCAGCGCTGCCGCCAGGACTACAGGAGCTGATTGTCTCTAATAACCCACTGACCAGCCTGCCGGTGCTGCCGCCAGGACTACGGGAGCTGGAGGTCTTTGGTAACCCGCTGACCCACCTGCCGGCGCTGCCGTCAGGACTATGTAAGCTGTGGGTCTTTGGTAATCAACTGACCAGCCTGCCGACGTTGCCGCCAGGACTACAGGATCTGTCGGTATCTGATAACCAACTGGCCAGCCTACCGGCGCTGCCGTCAGAATTATGTAAGCTGTGGGCCTATAATAACCGGCTGACCAGCCTGCCGGCGTTGCCGCCAGGACTACAGGAGCTGTCGGTATCTGATAACCAACTGGCCAGCCTGCCGGCGCTGCCGTCAGAATTATGTAAGCTGTGGGCCTATAATAACCGGCTGACCAGCCTGCCGGCGTTGCCGTCAGGACTGAAGGAGCTGATTGTATCTGGTAACCGGCTGACCAGCCTGCCGGCGCTGCCGTCAGAACTGGAGGAGCTGATGGTATCTGGTAACCGGCTGACCCGCCTGCCGGTGCTGCCGTCAGGACTACGGTCGCTGTCGGTCTTTGGTAACCGGCTGACCCGCCTGCCGGAA

>NZ_CP045761|2|2|3457453-3458077|CRT
TAATAATCTAACCAGCCTGCCAGCG	CTGCCGCCAGGACTACAGGAGCTGATTGTCTCTAA
TAACCCACTGACCAGCCTGCCGGTG	CTGCCGCCAGGACTACGGGAGCTGGAGGTCTTTGG
TAACCCGCTGACCCACCTGCCGGCG	CTGCCGTCAGGACTATGTAAGCTGTGGGTCTTTGG
TAATCAACTGACCAGCCTGCCGACG	TTGCCGCCAGGACTACAGGATCTGTCGGTATCTGA
TAACCAACTGGCCAGCCTACCGGCG	CTGCCGTCAGAATTATGTAAGCTGTGGGCCTATAA
TAACCGGCTGACCAGCCTGCCGGCG	TTGCCGCCAGGACTACAGGAGCTGTCGGTATCTGA
TAACCAACTGGCCAGCCTGCCGGCG	CTGCCGTCAGAATTATGTAAGCTGTGGGCCTATAA
TAACCGGCTGACCAGCCTGCCGGCG	TTGCCGTCAGGACTGAAGGAGCTGATTGTATCTGG
TAACCGGCTGACCAGCCTGCCGGCG	CTGCCGTCAGAACTGGAGGAGCTGATGGTATCTGG
TAACCGGCTGACCCGCCTGCCGGTG	CTGCCGTCAGGACTACGGTCGCTGTCGGTCTTTGG
TAACCGGCTGACCCGCCTGCCGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045761.1\|WP_002950893.1\|3449214_3450321_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP045761.1\|WP_001663874.1\|3478033_3478555_-\|ricin-type-beta-trefoil-lectin-domain-protein	unknown	unknown	gnl\|CDD\|238092
NZ_CP045761.1\|WP_002951021.1\|3467537_3468485_-\|omptin-family-outer-membrane-protease	unknown	unknown	gnl\|CDD\|236813
NZ_CP045761.1\|WP_031622606.1\|3473336_3477491_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|367071
NZ_CP045761.1\|WP_002950888.1\|3453383_3454517_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271181
NZ_CP045761.1\|WP_000476075.1\|3450374_3450836_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239647
NZ_CP045761.1\|WP_024139287.1\|3448488_3449130_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|234690
NZ_CP045761.1\|WP_002951022.1\|3468931_3469222_-\|Lipoprotein-Bor	unknown	unknown	gnl\|CDD\|368828
NZ_CP045761.1\|WP_002950891.1\|3450847_3451177_-\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|226868
NZ_CP045761.1\|WP_079811565.1\|3470574_3472845_-\|SET-domain-containing-protein-lysine-N-methyltransferase	unknown	unknown	gnl\|CDD\|380920
NZ_CP045761.1\|WP_002950889.1\|3452010_3453261_+\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180792
NZ_CP045761.1\|WP_000497446.1\|3477586_3477826_-\|DinI-family-protein	unknown	unknown	gnl\|CDD\|368780
NZ_CP045761.1\|WP_079791281.1\|3460927_3463132_+\|E3-ubiquitin--protein-ligase	unknown	unknown	gnl\|CDD\|185285
NZ_CP045761.1\|WP_001537766.1\|3446316_3446988_-\|two-component-system-response-regulator-PhoP	unknown	unknown	gnl\|CDD\|182755
NZ_CP045761.1\|WP_000693965.1\|3469752_3470154_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367843
NZ_CP045761.1\|WP_023179703.1\|3479102_3479315_-\|cold-shock-like-protein-CspF	unknown	unknown	gnl\|CDD\|185360
NZ_CP045761.1\|WP_153648991.1\|3464201_3467339_-\|SET-domain-containing-protein	unknown	unknown	gnl\|CDD\|380920
NZ_CP045761.1\|WP_023187119.1\|3451173_3451839_-\|23S-rRNA-pseudouridine(2457)-synthase-RluE	unknown	unknown	gnl\|CDD\|183115
NZ_CP045761.1\|WP_024139285.1\|3455817_3456366_+\|DUF2441-domain-containing-protein	unknown	unknown	gnl\|CDD\|287372
NZ_CP045761.1\|WP_002950897.1\|3447114_3448485_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452

Protein	Function_ID	Function_description	E-value
NZ_CP045761.1\|WP_002950893.1\|3449214_3450321_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP045761.1\|WP_001663874.1\|3478033_3478555_-\|ricin-type-beta-trefoil-lectin-domain-protein	gnl\|CDD\|238092	cd00161, RICIN, Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.	1.00368e-14
NZ_CP045761.1\|WP_002951021.1\|3467537_3468485_-\|omptin-family-outer-membrane-protease	gnl\|CDD\|236813	PRK10993, PRK10993, omptin family outer membrane protease.	5.05371e-176
NZ_CP045761.1\|WP_031622606.1\|3473336_3477491_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|367071	pfam02395, Peptidase_S6, Immunoglobulin A1 protease. This family consists of immunoglobulin A1 protease proteins. The immunoglobulin A1 protease cleaves immunoglobulin IgA and is found in pathogenic bacteria such as Neisseria gonorrhoeae. Not all of the members of this family are IgA proteases, EspP from E. coli O157:H7 cleaves human coagulation factor V and hbp is a hemoglobin protease from E. coli EB1.	2.96961e-116
NZ_CP045761.1\|WP_002950888.1\|3453383_3454517_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	4.40651e-47
NZ_CP045761.1\|WP_000476075.1\|3450374_3450836_-\|NUDIX-hydrolase	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	8.57627e-64
NZ_CP045761.1\|WP_024139287.1\|3448488_3449130_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|234690	PRK00218, PRK00218, lysogenization regulator HflD.	2.34169e-114
NZ_CP045761.1\|WP_002951022.1\|3468931_3469222_-\|Lipoprotein-Bor	gnl\|CDD\|368828	pfam06291, Lambda_Bor, Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.	1.69329e-31
NZ_CP045761.1\|WP_002950891.1\|3450847_3451177_-\|DUF1311-domain-containing-protein	gnl\|CDD\|226868	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown].	4.9028e-45
NZ_CP045761.1\|WP_079811565.1\|3470574_3472845_-\|SET-domain-containing-protein-lysine-N-methyltransferase	gnl\|CDD\|380920	cd10522, SET_LegAS4-like, SET domain found in Legionella pneumophila type IV secretion system effector LegAS4 and similar proteins. LegAS4 is a type IV secretion system effector of Legionella pneumophila. It contains a SET domain that is involved in the modification of Lys4 of histone H3 (H3K4) in the nucleolus of the host cell, thereby enhancing heterochromatic rDNA transcription. It also contains an ankyrin repeat domain of unknown function at its C-terminal region.	2.06321e-13
NZ_CP045761.1\|WP_002950889.1\|3452010_3453261_+\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NZ_CP045761.1\|WP_000497446.1\|3477586_3477826_-\|DinI-family-protein	gnl\|CDD\|368780	pfam06183, DinI, DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known.	2.35837e-24
NZ_CP045761.1\|WP_079791281.1\|3460927_3463132_+\|E3-ubiquitin--protein-ligase	gnl\|CDD\|185285	PRK15387, PRK15387, type III secretion system effector E3 ubiquitin transferase SspH2.	0
NZ_CP045761.1\|WP_001537766.1\|3446316_3446988_-\|two-component-system-response-regulator-PhoP	gnl\|CDD\|182755	PRK10816, PRK10816, two-component system response regulator PhoP.	8.2969e-164
NZ_CP045761.1\|WP_000693965.1\|3469752_3470154_-\|hypothetical-protein	gnl\|CDD\|367843	pfam04151, PPC, Bacterial pre-peptidase C-terminal domain. This domain is normally found at the C-terminus of secreted bacterial peptidases. They are not present in the active peptidase. It is possible that they fulfill a similar role to the PKD (pfam00801) domain, which also are found in this context. Visual analysis suggests that PKD and PPC are distantly related (personal obs:Bateman A, Yeats C).	7.05634e-08
NZ_CP045761.1\|WP_023179703.1\|3479102_3479315_-\|cold-shock-like-protein-CspF	gnl\|CDD\|185360	PRK15463, PRK15463, cold shock-like protein CspF; Provisional.	4.46298e-46
NZ_CP045761.1\|WP_153648991.1\|3464201_3467339_-\|SET-domain-containing-protein	gnl\|CDD\|380920	cd10522, SET_LegAS4-like, SET domain found in Legionella pneumophila type IV secretion system effector LegAS4 and similar proteins. LegAS4 is a type IV secretion system effector of Legionella pneumophila. It contains a SET domain that is involved in the modification of Lys4 of histone H3 (H3K4) in the nucleolus of the host cell, thereby enhancing heterochromatic rDNA transcription. It also contains an ankyrin repeat domain of unknown function at its C-terminal region.	1.54013e-12
NZ_CP045761.1\|WP_023187119.1\|3451173_3451839_-\|23S-rRNA-pseudouridine(2457)-synthase-RluE	gnl\|CDD\|183115	PRK11394, PRK11394, 23S rRNA pseudouridine(2457) synthase RluE.	1.94146e-125
NZ_CP045761.1\|WP_024139285.1\|3455817_3456366_+\|DUF2441-domain-containing-protein	gnl\|CDD\|287372	pfam10386, DUF2441, Protein of unknown function (DUF2441). This is a family of highly conserved, predicted, proteins from Bacillus species. The structure forms a homo-dimer. The function is unknown.	4.35076e-06
NZ_CP045761.1\|WP_002950897.1\|3447114_3448485_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0

>NZ_CP045761.1|WP_024139285.1|3455817_3456366_+|DUF2441-domain-containing-protein
MFKFFHADRAGTLSENSVIELNEDGLSYFGTNYSQYFGTPLHEHPANALREALLEIIREKSKLFAEECPSRYKCLFGALNVADAVQFARTIEPVPETDVRIFEVFANSYFIGDVNFIDAEPKNIERKAEYLKNYWLTKIYQGCYVSSPPRPPRLEVLLPLPVRVGKIVGIVPGITGKGAQKV
>NZ_CP045761.1|WP_002950888.1|3453383_3454517_-|tyrosine-type-recombinase/integrase
MAARPRTHKITIPNLYSKLDKRTGRVYWQYKHPITGKFHSLGTDAEEAKQVASEANSIIAEQRTRQILSVNEKIARLRESREFITVTTWLDRYLAIQQEHLETGDIKLNSVKQKNKPVELLRQHAGMMYLKDVSTLEVAEVVDAVKALGHNRMAQVVRTTLIDVFKEAQHAGHVPPGYNPAQATRQPRNRVIRERLSLDEWKEIYTAAEQHPPYLQCAMLLAVVTGQRIGDISRMKFSDIWDDMLHVEHEKTGAKVALPLSLRCEALNISLREVVAKCRDAVVSKYLVHFRHSTSQATRGDRVSANSITTTFKKARNRTGLSWPDRKAPTFHEQRSLSERLYEAQGIDTQKLLGHKSPQQTAKYHDDRGKDWTVVAV
>NZ_CP045761.1|WP_002950889.1|3452010_3453261_+|NADP-dependent-isocitrate-dehydrogenase
MESKVVVPAEGKKITLQNGKLNVPENPIIPFIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIRDYRVAIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTRRLVRAALEYAITNDRDSVTLVHKGNIMKFTEGAFKDWGYQLARDEFGGELIDGGPWLKIKNPNTGKEIVVKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMQWFEAADLIVKGMEGAIAAKTVTYDFERLMEGAKLLKCSEFGDAIIANM
>NZ_CP045761.1|WP_023187119.1|3451173_3451839_-|23S-rRNA-pseudouridine(2457)-synthase-RluE
MRQLISSENTMQKTSFRNHYVKRFSSRQASTSRKENPPKRVVLFNKPYDVLPQFTDEAGRRTLKDFIPVQGVYAAGRLDRDSEGLLVLTNDGALQARLTQPGKRTGKIYYVQVEGIPDNEALQALRTGVTLNDGPTLPAGIEIVAEPDWLWPRTPPIRERKNIPTAWLKVTLYEGRNRQVRRMTAHVGHPTLRLIRYSMGDYTLNGLDNGQWRELAQEKDR
>NZ_CP045761.1|WP_002950891.1|3450847_3451177_-|DUF1311-domain-containing-protein
MSRLLIAFALLTPLSVNAASFDCQKAQAADEKTICAHLALNDKDVEMHAKYQFLKGLFAMGRRGALQDAQQSWLKQRQQCKADVTCLTKAYNERLKQLDALYDHIDKPL
>NZ_CP045761.1|WP_000476075.1|3450374_3450836_-|NUDIX-hydrolase
MFKPHVTVACIVHAEDKFLVVEETINGKSLWNQPAGHLEADETLAQAATRELWEETGITAQPQYFIRMHQWIAPDKTPFLRFLFAIKLDHICATEPHDNDIDCCRWVSADEILNAPNLRSPLVAESIRSYQTGQRYPLSMVGEFNWPFTEGVK
>NZ_CP045761.1|WP_002950893.1|3449214_3450321_-|tRNA-2-thiouridine(34)-synthase-MnmA
MSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADINGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQVRKIAEDLRLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEEPWYVVDKDVENNVLIVAQGHEHPRLMSSGLIAQQLHWVDREPFTGPLRCTVKTRYRQTDIACTINALDDDRIEVIFDEPVAAVTPGQSAVFYSGEVCLGGGIIEQRLPLTV
>NZ_CP045761.1|WP_024139287.1|3448488_3449130_-|high-frequency-lysogenization-protein-HflD
MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSVIDMNPSSTLGVFGGNEANLRLGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSAKGALNTLGDRINGLQRQLDHFDLQSDTLMSAMAGIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRASLLAGIRAAVLWQQVGGGRLQLMFSRHRLTTQAKQILAHLTPEL
>NZ_CP045761.1|WP_002950897.1|3447114_3448485_-|adenylosuccinate-lyase
MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADANGYLDTLVANFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAAIPALHAVSEFIHFACTSEDINNLSHALMLKSARDEVILPYWRQVINAVKDLATQYRDIPLLSRTHGQPATPSTLGKEMANVAYRMERQFRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCIARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLHHLANKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDSLALPEAEKTRLKAMTPANYIGRAVALVDELK
>NZ_CP045761.1|WP_001537766.1|3446316_3446988_-|two-component-system-response-regulator-PhoP
MRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGYLFELR
>NZ_CP045761.1|WP_079791281.1|3460927_3463132_+|E3-ubiquitin--protein-ligase
MPFHVGSGCLPATISNLLINRIAQSATPPEMSLWEKMKEFFCSTHQTEALECIWMICHPPAGTTREAVVSRFEQLRTLAYAGCEESIQSGRHGEGQFCILDADSQEILSVTLDDYGNYTVNCLGYHETHRFTLETEQGEECAGPAEGTPQTPAEYDTAWPEWERAAPAGESRDRAETVQEMRACLNNGNAVLNVGESGLTTLPGCLPAHITTLIIPRNNLTRLPALPPGLQELIVSNNPLTSLPALPSALRDLTVVDNHLLTSLPELPSGLQMLSAYGNQLTRLPALPSGLKELSVSNNQLTSLPELPSELSKLHVDNNRLTSLPELPSELSKLYADNNQLTGLPELPSELKELAVSGNPLPSLPALPPGLHSLWIHHNQLTRQPEIITGLSSEVTVYLGGPLPERILQALQDITSAPGYSGPRIHFNMAGPSVHWGTRALHLAVADWLMPAREGEPAPADRWHVFGREDNADAFSLFLDRLSETENFKKDAGFKAQILSWLAHLAEDDALRAKTFAMATEATSSCEDRVTLALHQMQNVQLVHNAEKGKYDNNLAALVVTGREMFRLEKLEQIAREKAGTLTLVDDVEVYLAYQNKLRKPLGLTRVTAEMRFFGVSGVTVTDLQAAELQVKAAEKSEFREWILQWGPLHSVLERKAPERVNALREKQISDYEHTYRMLSDTELKPSGLVGNTDAERTIGARAMENAKKAFLDGLRPLVDEILGSYLKARRRIN
>NZ_CP045761.1|WP_153648991.1|3464201_3467339_-|SET-domain-containing-protein
MRGIGAVIHFSPPTGSIAPSPDVSGRWNSIRDWFSLPVRDEAALCFRVFYQPDEAMPPSDRLKNFLKLKALASPGRQDNFTTERILGTGETICMIASGKNSDLPSVTLHLSDQEWHMTQSQELAPAAESGEGPRSKGIPITSTQIQAWLDLPQEAKRDAGGWRKWTRTQGITLGSAGLCLTNTGLTPYGRERLHPPKERSLPITVGQLRTWRDLSVEARSETGGWVKWALAQGIAITSAKKHLTNTGLTLYGMERLQRPEERGATITEAQILTWLNMPPEERNQAGGWITWAQAQGIATNSARLYLSNTGLTARGMARLQLSEEKGVPITDRQIQAWRDLPQATKHQTGGWAKWALAQEISITSAQKYLTNTGLTLPGVEMLQPPGEKTAPITESQLLAWLNMSAQEHNETGGWRTWAQTQKIAINSARKYLTNTGLTPRGMERLQRAEEKDHSITNRQIQAWQDLPQATKLEIGGWKKWAQTQGISLRSAGNFLTNVGLTPFGTERLQPPEERGAPITNAQIQAWRDLPQKAKREAGGRIKWAQTQRIAIRSAENFLTNSGLTPFGAERLLPPVERGVPITTTQIQAWQELSQEAKRAAGGCIKWAQEQGITIGSAIACLTNTGLTFNGRKRLLPPEERGSTITKAQFLKWADMSPEERSEAGGWRAWAQAQGISIRSAGNVLTNSGLTPFGTERLKSPEERGAPITNVQIRTWRDLPQEAKRQAGGWIKWAQAQEIAIGSASGYLTNTGLKANGMARLRQSPSATVTLSRPQASTSADTSDEIPVSESPSPQDSEDIAAPPAKQMKEEEDDVTWRTHQINNNLLILQHWRDPTISVMAQAEGRIETLQVTRWRPLFNALPRQTKARINQEIRWFLQNEGRHDARMNEMMSVAIPLDDRDGYRGRTIYARTDLAAFTVLGPYSGRLLDSETVRGEYEKEYGREASNYYFATRSQERIVSGFPQGNILSLLNSPVFTQRTAEAEARQNVSAVLVGKNIHFFLTTRDVRAGEELWFDYGPDYQHFEPGEALRSAQVKEEPLSSEEE
>NZ_CP045761.1|WP_002951021.1|3467537_3468485_-|omptin-family-outer-membrane-protease
MRLKLLGIVLTAPVAFNSLASTEFSFFTPEKVSTDISLGTLSGKTKERVYDPTEGGRKVSQLDWKYNNAAIIKGAINWDLIPWLSVGAAGWSTIDSRGANMVDKDWMDAGHAGTWTDESRHPNTHLNYANEFDLNIKGWLLNESDYRLGLMAGYQESRYSFNATGGTYIYSENGGFRNETGSFPDGERGIGYKQQFKMPYIGLTGSYRYDNFEFSSAFKYSGWVRATDNDEHYARGITFRSKVKNQNYYSIVANAGYYVTPNAKVYVEGAWNRLTNKKGDTTLYDRSNSTSEHSKNTAGIENYNFMTTVGLKYTF
>NZ_CP045761.1|WP_002951022.1|3468931_3469222_-|Lipoprotein-Bor
MIKAVSAFVLVLFLSGCAQQTFKMSSIPVASPKKVITHHFFISGLGQKKTVDATAICGGADKVMRTETQQTFVNGLLGFVTLGIYTPLEARVYCSN
>NZ_CP045761.1|WP_000693965.1|3469752_3470154_-|hypothetical-protein
MKIKHIGKAVFLLALVTSTCFAAGKSINVEFRKGHYRAQYSGIIKGYDYDTYKFQAKKGQQLHISMSNESADTYLFGPGISDSVDLSRYSPALNDAGKYTLPASGNYELRILQTRNDARRNKTKKYRISIQIK
>NZ_CP045761.1|WP_079811565.1|3470574_3472845_-|SET-domain-containing-protein-lysine-N-methyltransferase
MRGIGAVIHFRPPTDSSMPSPDLSGRWNSIRDWFSLPVQDEAAQCFRVFYQPDEATSPSDRLKNFLKLKALASPGRQDNFATERILGTGETICMIASGKNSDFPPVTLHLSDQEWHMTQSQEETADCTVLPLSAGNPAATTAEESAGASRKGSRITNTQIQAWRDLSPEAKRKAGGWKIWAQPQGISISGAKQYLTNAGLTSRGVERLQPPGEKGSSITNRQIQAWRDLPQEEKLEAGGWIKWVQTQGLSISGAKQYLTNTGLTSRGVERLQPPGEKGSSITNAQIQAWRDLPQEAKLEAGGWMKWVQAQGVSIASAGNFLTSTGLTPFGTDRLKQPEERGTSITNMQIRTWRDLPQEAKRKVGGWMTWAQALGIDIGSACSYLTNTGLTPKGVVRLSPAARGIPITETQLLAWFNMSSEQRRASGGWATWAQTQGISYISARKYLAPLDSEIPSSGTSRPQPSATVTSDSPRASTSAATGDEITVSVSTPPASSGEKRALPSTKEDISAPPAKQMKEEEDDVTWRTHQINNNLLILQHWRDPTISVMAQAEGRIETLQVTRWRPLFNALPRQTKARINQEIRWFLQNEGRHDARMNEMMSVAIPLDDRDGYRGRTIYARTDLAAFTVLGPYSGRLLDSETVRGEYEKEYGREASNYYFATRSQERIVSGFPQGNILSLLNSPVFTQRTAEAEARQNVSAVLVGKNIHFFLTTRDIRAGEELWFDYGPDYQHFEPGEALRSVQVKVEPPSPKSDSI
>NZ_CP045761.1|WP_031622606.1|3473336_3477491_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MNKIYALKYSVRQGALVPVSELATRVKKSSRTSLIKKLIPSVIINTMLLGYSASSLAAVVRDDIPYQTIRDFAENKGQFTPGSMNIPVYNKAGAVIGYLNNAPMPDFSSANHQSAVATLVSPQYIVSVKHNGGYQSVSFGDGENGYRLVDRNNQPGRDFHAPRLNKLVTEVEPSLMTESGMVSGAYSGKNRYPVFYRIGSGTQEIKDANGHITSISGAYSYLTGGTAGSPGSYNQGQMISTNTNKQLYSLVQGPMGTHPRSGDSGSPLFAYDSVLQKWVIVGVDSSGGGGGTNWAVVDANFVNQAIQDDTDAPVTFIAGQGPLRWAFDSTDGTGTLTQQGTTYQMHGQKGADLNAGKNLVFNGADGQVVLEDAVNQGAGALTFNRNYTVFTNNGATWRGAGLDIIRDAEVTWQVNGVQGDNLHKIGEGVLKVNGIGINPGGLKVGDGTVILAQRPDEDEKVQAFSSVNIASGRPTVVLTDSRQVNPDNISWGFRGGRLDINGNDITFHKINAADNGANIINTSDTFATVSIKPLTDMTVTINDWDKNKSSGGAAGLLYKYSNPYTHTVDYFIQKRKGYGYYPVNQADNDSWEYVGHNETQAIERIKSRQPVDDRIYHGNIAGNIHLNIDTSHSNGGVIFDGNIETPEGELMQSGGQLTFQGHPVIHAYNGKGVTDKLKSLGDDSVRNQPTSFDQSDWENRTFKLKTLLLKNTDFGLARNASLNGNIEAVQSSVTLGTPNLYIDLNDGNGTKVTPQKGTSVAGQDMDMSRYAGKVTLSERSILDVREIFTGSIQSQDSTVTVSSRHAKLDDYSRFGNTTLTLQEGARLSAAGGWWSDSDVIVGPAATLILAGSPAGSLPGQMSPAFYSTDYGAGYQLGAGSELQFSPYTLVTGDIRAEGDADITIGSSENIALADNLPLEEQMIYSLFNGFRNVYSGIVSAPQGRMAMTDTQWQMSGDSRTRTLRMTRSLAGFTGRGFNTLTTDTLQASQSAFALRTDLKNSDKIVVNQKAEGRDNTLFVNFLKKPSGKESLNIPLVSAPAGANPAMFKAAERVTGFSLVTPTLHTTEQDGKIQWVLDGFKSAPDKGSAASANSFMGMGYKNFMTEVNNLNKRMGDLRDTQGEDGMWVRIMNGAGTGDAGYSDRYTHLQTGFDKKHRLTGADLFTGVLMSYTDSSASGRAYSGDTHSLGGGLYASVMFDSGIYMDVIGKYIHHDNDYNAGFAGLGKRNYGTHSWYAGLEGGYRYHLTESLYIEPQAELVYGTVSGTTLKWNDNGMDVSMRSKTYNPLIGRTGVALGKTFSGKDWSITARTGVDYQFDLVANGETALRDASGEKRFTGEKDSRMLYNVGLNAQVKDNVRFGLELEQSAFGKYNVDHAINANFRYMF
>NZ_CP045761.1|WP_000497446.1|3477586_3477826_-|DinI-family-protein
MFVELVYDKRNVEGLPGAREIILNELTKRVHQIFPAAQVSVKPMQANALNSDCTKTEKERLNRMLEEMFEEADMWLIAE
>NZ_CP045761.1|WP_001663874.1|3478033_3478555_-|ricin-type-beta-trefoil-lectin-domain-protein
MALLSGKTALVLCLSSILCGCTTDGLPAPYSINLSFPVITQNQINSGGYYINDAEPIRTTEGLCLDTGSGQQNHLTLQECKNVPSQLFSFHRDKITHREKCLDAAGQGTKEGTPIILYSCTGNDNQRWFTDDNKIKGKQSRKCLGTNSFFVRKGDPVVLADCDFSRALEFTIR
>NZ_CP045761.1|WP_023179703.1|3479102_3479315_-|cold-shock-like-protein-CspF
MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACSQHETEALIPGIRVEFCRINGLRGPTAANVYLS

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Crispr_ID: NZ_CP045761_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045761_3

3675949-3676094

Orphan

Consensus_repeat	Method
GGTTCGCTTATGGCCTGCTGCTCCTGCTTGCGGGCTTTGGCGCGGGCGATAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045761_3

>merge|NZ_CP045761|3|3675949-3676094|CRISPRCasFinder
GGTTCGCTTGCGGCCTGTTGCTCCTGCTTACGGGCTTTGGCGCGGGCGATAGCCGCCTCCACCGCGGCTTTACGCGGGTCGACCGGTTCGGCAGGTTCGCTTATGGCCTGCTGCTCCTGCTTGCGGGCTTTGGCGCGGGCGATAGC

>NZ_CP045761|3|2|3675949-3676094|CRISPRCasFinder
GGTTCGCTTGCGGCCTGTTGCTCCTGCTTACGGGCTTTGGCGCGGGCGATAGC	CGCCTCCACCGCGGCTTTACGCGGGTCGACCGGTTCGGCA
GGTTCGCTTATGGCCTGCTGCTCCTGCTTGCGGGCTTTGGCGCGGGCGATAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045761.1\|WP_000100919.1\|3670709_3672215_-\|dipeptide/tripeptide-permease-DtpA	unknown	unknown	gnl\|CDD\|181969
NZ_CP045761.1\|WP_002951376.1\|3674789_3675848_-\|electron-transport-complex-subunit-RsxD	unknown	unknown	gnl\|CDD\|234844
NZ_CP045761.1\|WP_001030325.1\|3672835_3673471_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661
NZ_CP045761.1\|WP_000998242.1\|3680460_3681501_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183212
NZ_CP045761.1\|WP_162007610.1\|3680127_3680253_-\|division-septum-protein-Blr	unknown	unknown	gnl\|CDD\|380226
NZ_CP045761.1\|WP_002951738.1\|3678428_3679010_-\|electron-transport-complex-subunit-RsxA	unknown	unknown	gnl\|CDD\|235352
NZ_CP045761.1\|WP_002951686.1\|3683978_3685571_-\|PTS-maltose-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|182245
NZ_CP045761.1\|WP_002951693.1\|3681575_3682577_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
NZ_CP045761.1\|WP_000765718.1\|3669999_3670605_-\|glutathione-transferase-GstA	unknown	unknown	gnl\|CDD\|182533
NZ_CP045761.1\|WP_023187182.1\|3679086_3679527_-\|DUF2569-domain-containing-protein	unknown	unknown	gnl\|CDD\|371223
NZ_CP045761.1\|WP_000920820.1\|3674165_3674786_-\|electron-transport-complex-subunit-RsxG	unknown	unknown	gnl\|CDD\|179350
NZ_CP045761.1\|WP_001132092.1\|3666575_3666905_+\|C-type-lysozyme-inhibitor	unknown	unknown	gnl\|CDD\|236902
NZ_CP045761.1\|WP_000789738.1\|3669080_3669941_+\|pyridoxal-kinase-PdxY	unknown	unknown	gnl\|CDD\|235592
NZ_CP045761.1\|WP_001092595.1\|3677850_3678429_-\|electron-transport-complex-subunit-RsxB	unknown	unknown	gnl\|CDD\|235347
NZ_CP045761.1\|WP_000459432.1\|3682796_3683969_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|224090
NZ_CP045761.1\|WP_002951734.1\|3679615_3679831_-\|transcription-modulator-YdgT	unknown	unknown	gnl\|CDD\|182426
NZ_CP045761.1\|WP_002951683.1\|3685743_3686772_+\|Mal-regulon-transcriptional-regulator-MalI	unknown	unknown	gnl\|CDD\|182193
NZ_CP045761.1\|WP_000168622.1\|3667746_3669021_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP045761.1\|WP_001282328.1\|3666963_3667620_+\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|235555
NZ_CP045761.1\|WP_001289628.1\|3673470_3674163_-\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091

Protein	Function_ID	Function_description	E-value
NZ_CP045761.1\|WP_000100919.1\|3670709_3672215_-\|dipeptide/tripeptide-permease-DtpA	gnl\|CDD\|181969	PRK09584, tppB, dipeptide/tripeptide permease DtpA.	0
NZ_CP045761.1\|WP_002951376.1\|3674789_3675848_-\|electron-transport-complex-subunit-RsxD	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	0
NZ_CP045761.1\|WP_001030325.1\|3672835_3673471_-\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	7.55839e-157
NZ_CP045761.1\|WP_000998242.1\|3680460_3681501_+\|oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	0
NZ_CP045761.1\|WP_162007610.1\|3680127_3680253_-\|division-septum-protein-Blr	gnl\|CDD\|380226	NF033231, small_Blr, division septum protein Blr. Members of this family are Blr, named beta-lactam resistance protein because mutants have heightened sensitivity to beta-lactam antibiotics, but actually involved in cell division. The protein is very small.	1.01677e-20
NZ_CP045761.1\|WP_002951738.1\|3678428_3679010_-\|electron-transport-complex-subunit-RsxA	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	1.10671e-115
NZ_CP045761.1\|WP_002951686.1\|3683978_3685571_-\|PTS-maltose-transporter-subunit-IICB	gnl\|CDD\|182245	PRK10110, PRK10110, PTS maltose transporter subunit IICB.	0
NZ_CP045761.1\|WP_002951693.1\|3681575_3682577_-\|adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	9.52633e-156
NZ_CP045761.1\|WP_000765718.1\|3669999_3670605_-\|glutathione-transferase-GstA	gnl\|CDD\|182533	PRK10542, PRK10542, glutathionine S-transferase; Provisional.	1.5183e-150
NZ_CP045761.1\|WP_023187182.1\|3679086_3679527_-\|DUF2569-domain-containing-protein	gnl\|CDD\|371223	pfam10754, DUF2569, Protein of unknown function (DUF2569). This family is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homolog thereof.	7.00593e-38
NZ_CP045761.1\|WP_000920820.1\|3674165_3674786_-\|electron-transport-complex-subunit-RsxG	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	1.54389e-142
NZ_CP045761.1\|WP_001132092.1\|3666575_3666905_+\|C-type-lysozyme-inhibitor	gnl\|CDD\|236902	PRK11372, PRK11372, C-type lysozyme inhibitor.	2.77627e-80
NZ_CP045761.1\|WP_000789738.1\|3669080_3669941_+\|pyridoxal-kinase-PdxY	gnl\|CDD\|235592	PRK05756, PRK05756, pyridoxal kinase PdxY.	0
NZ_CP045761.1\|WP_001092595.1\|3677850_3678429_-\|electron-transport-complex-subunit-RsxB	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	5.4717e-131
NZ_CP045761.1\|WP_000459432.1\|3682796_3683969_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	1.31595e-173
NZ_CP045761.1\|WP_002951734.1\|3679615_3679831_-\|transcription-modulator-YdgT	gnl\|CDD\|182426	PRK10391, PRK10391, transcription modulator YdgT.	1.9931e-47
NZ_CP045761.1\|WP_002951683.1\|3685743_3686772_+\|Mal-regulon-transcriptional-regulator-MalI	gnl\|CDD\|182193	PRK10014, PRK10014, DNA-binding transcriptional repressor MalI; Provisional.	0
NZ_CP045761.1\|WP_000168622.1\|3667746_3669021_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP045761.1\|WP_001282328.1\|3666963_3667620_+\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|235555	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase.	1.19915e-127
NZ_CP045761.1\|WP_001289628.1\|3673470_3674163_-\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	3.25756e-133

>NZ_CP045761.1|WP_002951376.1|3674789_3675848_-|electron-transport-complex-subunit-RsxD
MVFRIASSPYTHNQRQTSRIMLLVLIAALPGIAAQTWFFGWGTLFQIVLAAITSLVAEAIVLRLRKQPVASHLQDYSALLTGLLLAVSIPPLAPWWMVVLGTGFAIIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPYEIAATTPDMLDTLRMIFTGHTASGGGMTLLRTGIDGISQATPLDTFKTSLRAGHSVEQIMQYPIYSGVLAGVGWQWVNLAWLVGGVFLLWQKAIRWHIPVSFLLTLALCAALGWLFSPATLASPQLHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGVLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
>NZ_CP045761.1|WP_000920820.1|3674165_3674786_-|electron-transport-complex-subunit-RsxG
MLKTIRKHGITLALFAAGSTGLTAVINQMTKSTIHEQALQQQHALFDQVLPPDRYNNNLQESCYLVDAPALGKGTHRVFIARKDDKPVAAIIEATAPDGYSGAIQLIVGADFNGTILGTRVTEHHETPGLGDKIERRLSDWITHFSGKTISGENDTHWAVKKDGGDFDQFTGATITPRAVVNAVKRAGLYAESLPAQLPHLTACGE
>NZ_CP045761.1|WP_001289628.1|3673470_3674163_-|electron-transport-complex-subunit-E
MSEIKDIVVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTVSALRRWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKGPWLSALDGFSIGMGATGAMFVLGSLREILGNGTLFDGADSLLGGWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAVKYLIDEKMKKRRAETAPSAVPAGETGKV
>NZ_CP045761.1|WP_001030325.1|3672835_3673471_-|endonuclease-III
MNKAKRLEILTRLRDSNPHPTTELNFTSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKSYIKTIGLFNSKAENVIKTCRILLDKHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPNEFKVDCHHWLILHGRYTCIARKPRCGSCLIEDLCEYKEKVDI
>NZ_CP045761.1|WP_000100919.1|3670709_3672215_-|dipeptide/tripeptide-permease-DtpA
MSTANNKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAVVLAIGYALVAWSGHDAGVVYMGMAAIAVGNGLFKANPSSLLSTCYAKDDPRLDGAFTMYYMSVNIGSFFSMLATPWLAARYGWSTAFALSVVGMLITVVNFAFCQRWVKSYGSKPDFEPINFRNLLLTIVGIVVLITVATWLLHNQDIARMVLGVIALGIVIIFGKEAFSMHGAARRKMIVAFILMLQAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAFEPEQYQALNPFWIIIGSPILAAIYNRMGDTLPMPMKFAIGMVLCSGAFLILPLGAKFANDAGIVSVNWLIVSYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGANIIGGYVANLMAVPSDVTDPLMSLEVYGRVFMQIGVATAVIAVLMLLTAPKLNRMTQDDDTAEKGSKAATV
>NZ_CP045761.1|WP_000765718.1|3669999_3670605_-|glutathione-transferase-GstA
MKLFYKPGACSLASHITLREIGKDFTLDGVDLAKKRLENGDDYLAVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVSSLARYHTLEWLNYIATELHKGFTPLFRPDTPEMLKPAVRAGLEKKFQYVDEALSDDQWICGQRFTLADAYLFTVLRWAYGVKLNMDGLTHIESYMRRVAERPTVAAALKAEGLN
>NZ_CP045761.1|WP_000789738.1|3669080_3669941_+|pyridoxal-kinase-PdxY
MKNILAIQSHVVFGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIADIGQLAHCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRYALPASDIIAPNLIELEILSKHSVNNVNDAVQAARELIAQGPEIVLVKHLARAGYSSERFEMLLVTAQEAWHISRPLVDFGSRQPVGVGDVTSGLLLVKLLQGATLQQALEHVTAAVYEIMIATKTMQEYELQVVAAQERIANPEHYFSATRL
>NZ_CP045761.1|WP_000168622.1|3667746_3669021_+|tyrosine--tRNA-ligase
MASSNLIKQLQERGLVAQVTDEDALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVAKIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMDIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLIAAKRITESLFNGNLGELSEADFEQLAQDGVPMIELEKGTDLMQALVDAELQPSRGQARKTIASNAVTINGEKQSDPEYIFNDEDRLFGRYTLLRRGKKNYCLICWK
>NZ_CP045761.1|WP_001282328.1|3666963_3667620_+|pyridoxamine-5'-phosphate-oxidase
MSDNDQLQQIAHLRREYTKGGLRRRDLPAEPLTLFERWLGQACDARLADPTAMVVATVDDKGQPYQRIVLLKHYDEKGLVFYTNLGSRKAHQIEHNPRISLLFPWHMLERQVMVTGIAERLTTLEVVRYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSIEQMEFWQGGEHRLHDRFLYQRDDGAWKIDRLAP
>NZ_CP045761.1|WP_001132092.1|3666575_3666905_+|C-type-lysozyme-inhibitor
MPMKKIVIMCLPVLLTGCSVYQQFVERMQTDTLEYQCDEKPLTVNVNNPREEVSFVYDNKLLTLKQGISASGARYTDGIYVFWSRGEGATVYKRDRIVLNNCQLQNPKR
>NZ_CP045761.1|WP_001092595.1|3677850_3678429_-|electron-transport-complex-subunit-RsxB
MNTIWIAVGALTFLGLVFGAILGYASRRFAVEDDPVVEKIDAILPQSQCGQCGYPGCRPYAEAVGLQGEKINRCAPGGEAVMLKMAELLNVEPQPCDGEEQQAAPVRMLAIIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCIELRPVNETPDSWKWDLNTIPVRIIPVEQHA
>NZ_CP045761.1|WP_002951738.1|3678428_3679010_-|electron-transport-complex-subunit-RsxA
MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVMTLASICAWLIDTWILIPLDLVYLRTLAFILVIAVVVQFTEMVVRKTSPALYRLLGIFLPLITTNCAVLGVALLNINLGHHFLQSALYGFSASVGFSLVMVLFAAIRERLAVADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL
>NZ_CP045761.1|WP_023187182.1|3679086_3679527_-|DUF2569-domain-containing-protein
MTTTPPQRIGGWLLGPLAWLLVALLSASVALLLYVMALATPQTLKTLSGQETGNLLLWGISFITAIAMWYYTLWLTIAFFKRRRCVPKHYIIWLLMSVLLAIKAFAFSPVSDAFAVRQLLFPLLATALIVPYLKRSARVKTTFVNP
>NZ_CP045761.1|WP_002951734.1|3679615_3679831_-|transcription-modulator-YdgT
MTVQDYLLKFRKISSLESLEKLFDHLNYNLTDDRDIVNMYRAADHRRAELVSGGRLFDVGQVPQSVWRYVQ
>NZ_CP045761.1|WP_162007610.1|3680127_3680253_-|division-septum-protein-Blr
MNRLIELTGWIVLVISVILLGIANHIDNYQPPEPVASVQNK
>NZ_CP045761.1|WP_000998242.1|3680460_3681501_+|oxidoreductase
MNDKIRVGLIGYGYASKTFHAPLIMGTPGLELAAVSSSDETKVKADWPAVSVVSEPRHLFNDPHIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALARSTGRVLSVFHNRRWDSDFLTLKALLADGVLGEVSLFESHFDRFRPQVRDRWREQGGPGSGIWYDLAPHLLDQAIQLFGLPVSMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTLVEGETRKEENWLTLPGNYPAYYAAIRDALNGNGENPVPASQAIQIMELIELGMESAKHRATLCLA
>NZ_CP045761.1|WP_002951693.1|3681575_3682577_-|adenosine-deaminase
MIDITLPLTDIHRHLDGNIRAQTILDLGRQFNIALPAQTLETLIPHVQVTATEPDLVSFLSKLDWGVKVLASLDACRRVAFENIEDAARNGLHYVELRFSPGYMAMAHQLPIAGVVEAVIDGVRDGCNTFGIEARLIGIMSRTFGEAACLQELDALLAHREKITALDLAGDELGFPGSLFLSHFNRARDAGWHITVHAGEAAGPESIWQAIRELGAERIGHGVKAVEDRALMDFLAQQRIGIESCLTSNIQTSTVASLADHPLKTFLEHGVLASLNTDDPAVQGVDIIHEYHVAAPAAGLSREQIRQAQINGLEIAFLSDGEKRALREKVVAA
>NZ_CP045761.1|WP_000459432.1|3682796_3683969_-|pyridoxal-phosphate-dependent-aminotransferase
MFDFSQEVDRRGTWCTQWDYVADRFGEADLLPFTISDMDFATAPCILEALNQRLSHGVLGYSRWNNEAFLGAITHWFATRHQTTIDARALVYGPSVIYMVSELIRQWSDEGDGVVVHTPAYDAFYKAIEGNHRIVTPVPLEKEGNAWYCDMAKLEAALARPESKILLLCSPQNPTGKVWTRDELETVSALCERHGVRVISDEIHMDMVWGDQPHIPWSNVARGDWALFSSGSKSFNIPALTGAYGIIENSISRERYLAALKGRDGLSSPAVLSLTAHIAAYQHGAPWLDALRAWLAANMRYIEQALNDAFPTLNWQAPPSTYLAWIDLRPLGIDDQKLQNALIHQEKVAIMPGDTYGAEGRGFVRLNAGCPRLKLEKGVNGLINAIRAVR
>NZ_CP045761.1|WP_002951686.1|3683978_3685571_-|PTS-maltose-transporter-subunit-IICB
MTTKTTPKITLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSFSSHDVITLLPVLGNPLLQAIFTWMSKVGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGFVGYAVMNLAVNFWLTAKGILPTTDAVVLKANNVQNILGIPSIDTGILGAVIAGIIVWMLHERFHAIRLPDALAFFGGTRFVPIVSAVVMGLVGLVIPLVWPVFAMGISGLGHIINSAGDFGPMIFGTGERLLLPFGLHHILVALIRFTEAGGTQEVCGHTVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRPKIKGLLISGLIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTIMAILGVTIGNTDGNIIDFVVFGILHGLSTKWYLVPVVAVIWFAVYYVIFRFAITRFNLKTPGREAEIATRIEKAIAGAPGKSGYNVPAILAALGGTENIVSLDNCITRLRLSVKDMSLVDVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMVGLMNTVQA
>NZ_CP045761.1|WP_002951683.1|3685743_3686772_+|Mal-regulon-transcriptional-regulator-MalI
MAIAKKITIHDVALAAGVSVSTVSLVLSGKGRISAATGERVNAAIEQLGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHGGKDGEQLNQRFTMLLNQGVDGVVIADAAGSSEALRAQADVQGIPVVFASRASYLDDADTVRPDNMQAAQLLTEYLIRQGHQRIAWLGGQSASLTRAERVGGYCATLLKYGLPFHSEWVVECASSQKQAAESITALLRYNPTISAVVCYNETIAMGAWFGLLRAGRQSGESGVDRYFEQQVSLAAFADVAESALDDLPIIWASTPAREIGYTLAERILQRIAHDEHHLRSQTIAARLVTQK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP045761_1	1.6\|630640\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	630640-630671	32	NZ_CP045761.1	1020118-1020149	0	1.0
NZ_CP045761_1	1.20\|631494\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631494-631525	32	NZ_CP045761.1	4009116-4009147	0	1.0
NZ_CP045761_1	1.26\|630641\|33\|NZ_CP045761\|PILER-CR	630641-630673	33	NZ_CP045761.1	1020118-1020150	0	1.0
NZ_CP045761_1	1.40\|631495\|33\|NZ_CP045761\|PILER-CR	631495-631527	33	NZ_CP045761.1	4009115-4009147	0	1.0
NZ_CP045761_2	2.1\|3457478\|35\|NZ_CP045761\|CRT	3457478-3457512	35	NZ_CP045761.1	3461603-3461637	0	1.0
NZ_CP045761_2	2.2\|3457538\|35\|NZ_CP045761\|CRT	3457538-3457572	35	NZ_CP045761.1	4201869-4201903	1	0.971
NZ_CP045761_2	2.1\|3457478\|35\|NZ_CP045761\|CRT	3457478-3457512	35	NZ_CP045761.1	4197816-4197850	2	0.943
NZ_CP045761_2	2.2\|3457538\|35\|NZ_CP045761\|CRT	3457538-3457572	35	NZ_CP045761.1	4201929-4201963	2	0.943
NZ_CP045761_2	2.2\|3457538\|35\|NZ_CP045761\|CRT	3457538-3457572	35	NZ_CP045761.1	4201989-4202023	2	0.943

1. spacer 1.6|630640|32|NZ_CP045761|CRISPRCasFinder,CRT matches to position: 1020118-1020149, mismatch: 0, identity: 1.0

gcgctggcggcggttatcgctctgttcaattc	CRISPR spacer
gcgctggcggcggttatcgctctgttcaattc	Protospacer
********************************

2. spacer 1.20|631494|32|NZ_CP045761|CRISPRCasFinder,CRT matches to position: 4009116-4009147, mismatch: 0, identity: 1.0

atatccacggcgcgcgtatcctggcgatgctg	CRISPR spacer
atatccacggcgcgcgtatcctggcgatgctg	Protospacer
********************************

3. spacer 1.26|630641|33|NZ_CP045761|PILER-CR matches to position: 1020118-1020150, mismatch: 0, identity: 1.0

gcgctggcggcggttatcgctctgttcaattct	CRISPR spacer
gcgctggcggcggttatcgctctgttcaattct	Protospacer
*********************************

4. spacer 1.40|631495|33|NZ_CP045761|PILER-CR matches to position: 4009115-4009147, mismatch: 0, identity: 1.0

atatccacggcgcgcgtatcctggcgatgctgg	CRISPR spacer
atatccacggcgcgcgtatcctggcgatgctgg	Protospacer
*********************************

5. spacer 2.1|3457478|35|NZ_CP045761|CRT matches to position: 3461603-3461637, mismatch: 0, identity: 1.0

ctgccgccaggactacaggagctgattgtctctaa	CRISPR spacer
ctgccgccaggactacaggagctgattgtctctaa	Protospacer
***********************************

6. spacer 2.2|3457538|35|NZ_CP045761|CRT matches to position: 4201869-4201903, mismatch: 1, identity: 0.971

ctgccgccaggactacgggagctggaggtctttgg	CRISPR spacer
ctgccgccaggactacgggagctggaggtctctgg	Protospacer
*******************************.***

7. spacer 2.1|3457478|35|NZ_CP045761|CRT matches to position: 4197816-4197850, mismatch: 2, identity: 0.943

ctgccgccaggactacaggagctgattgtctctaa	CRISPR spacer
ctgccgccaggactacggaagctgattgtctctaa	Protospacer
****************.*.****************

8. spacer 2.2|3457538|35|NZ_CP045761|CRT matches to position: 4201929-4201963, mismatch: 2, identity: 0.943

ctgccgccaggactacgggagctggaggtctttgg	CRISPR spacer
ctgccgccaggactacgggagctggagatctctgg	Protospacer
***************************.***.***

9. spacer 2.2|3457538|35|NZ_CP045761|CRT matches to position: 4201989-4202023, mismatch: 2, identity: 0.943

ctgccgccaggactacgggagctggaggtctttgg	CRISPR spacer
ctgccgccaggactacgggagctggagatctctgg	Protospacer
***************************.***.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045761_1	1.7\|630701\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	630701-630732	32	NZ_CP014707	Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence	47357-47388	0	1.0
NZ_CP045761_1	1.7\|630701\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	630701-630732	32	CP053410	Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence	83044-83075	0	1.0
NZ_CP045761_1	1.27\|630702\|33\|NZ_CP045761\|PILER-CR	630702-630734	33	NZ_CP014707	Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence	47357-47389	0	1.0
NZ_CP045761_1	1.27\|630702\|33\|NZ_CP045761\|PILER-CR	630702-630734	33	CP053410	Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence	83043-83075	0	1.0
NZ_CP045761_1	1.7\|630701\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	630701-630732	32	NZ_KY515226	Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence	96079-96110	2	0.938
NZ_CP045761_1	1.7\|630701\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	630701-630732	32	NZ_KP763470	Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence	11443-11474	2	0.938
NZ_CP045761_1	1.27\|630702\|33\|NZ_CP045761\|PILER-CR	630702-630734	33	NZ_KP763470	Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence	11443-11475	3	0.909
NZ_CP045761_1	1.27\|630702\|33\|NZ_CP045761\|PILER-CR	630702-630734	33	NZ_KY515226	Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence	96078-96110	3	0.909
NZ_CP045761_1	1.6\|630640\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	630640-630671	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1328144-1328175	7	0.781
NZ_CP045761_1	1.6\|630640\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	630640-630671	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	113699-113730	7	0.781
NZ_CP045761_1	1.13\|631067\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631067-631098	32	NZ_CP045296	Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence	452221-452252	7	0.781
NZ_CP045761_1	1.8\|630762\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	630762-630793	32	MT711976	Streptomyces phage Coruscant, complete genome	103642-103673	8	0.75
NZ_CP045761_1	1.13\|631067\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631067-631098	32	NZ_CP031599	Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence	121112-121143	8	0.75
NZ_CP045761_1	1.13\|631067\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631067-631098	32	NC_042034	Mycobacterium phage ChrisnMich, complete sequence	37098-37129	8	0.75
NZ_CP045761_1	1.18\|631372\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631372-631403	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	1018861-1018892	8	0.75
NZ_CP045761_1	1.26\|630641\|33\|NZ_CP045761\|PILER-CR	630641-630673	33	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1328144-1328176	8	0.758
NZ_CP045761_1	1.26\|630641\|33\|NZ_CP045761\|PILER-CR	630641-630673	33	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	113699-113731	8	0.758
NZ_CP045761_1	1.14\|631128\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631128-631159	32	MN693862	Marine virus AFVG_250M91, complete genome	23029-23060	9	0.719
NZ_CP045761_1	1.14\|631128\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631128-631159	32	MN694690	Marine virus AFVG_250M90, complete genome	1218-1249	9	0.719
NZ_CP045761_1	1.14\|631128\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631128-631159	32	MN694690	Marine virus AFVG_250M90, complete genome	31689-31720	9	0.719
NZ_CP045761_1	1.14\|631128\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631128-631159	32	MN693992	Marine virus AFVG_250M87, complete genome	20635-20666	9	0.719
NZ_CP045761_1	1.14\|631128\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631128-631159	32	MN694247	Marine virus AFVG_250M89, complete genome	5765-5796	9	0.719
NZ_CP045761_1	1.14\|631128\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631128-631159	32	MN693850	Marine virus AFVG_250M88, complete genome	8596-8627	9	0.719
NZ_CP045761_1	1.16\|631250\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631250-631281	32	NC_016040	Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence	12629-12660	9	0.719
NZ_CP045761_1	1.18\|631372\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631372-631403	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	874696-874727	9	0.719
NZ_CP045761_1	1.19\|631433\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631433-631464	32	MH590604	Microbacterium phage ColaCorta, complete genome	26027-26058	9	0.719
NZ_CP045761_1	1.19\|631433\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631433-631464	32	MT553340	Microbacterium phage Glamour, complete genome	26019-26050	9	0.719
NZ_CP045761_1	1.19\|631433\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631433-631464	32	MH513982	Microbacterium phage Sansa, complete genome	26105-26136	9	0.719
NZ_CP045761_1	1.19\|631433\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631433-631464	32	MH590606	Microbacterium phage Andromedas, complete genome	26027-26058	9	0.719
NZ_CP045761_1	1.19\|631433\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631433-631464	32	MG839027	Microbacterium phage Eleri, complete genome	26028-26059	9	0.719
NZ_CP045761_1	1.34\|631129\|33\|NZ_CP045761\|PILER-CR	631129-631161	33	MN693862	Marine virus AFVG_250M91, complete genome	23028-23060	9	0.727
NZ_CP045761_1	1.34\|631129\|33\|NZ_CP045761\|PILER-CR	631129-631161	33	MN694690	Marine virus AFVG_250M90, complete genome	1218-1250	9	0.727
NZ_CP045761_1	1.34\|631129\|33\|NZ_CP045761\|PILER-CR	631129-631161	33	MN694690	Marine virus AFVG_250M90, complete genome	31689-31721	9	0.727
NZ_CP045761_1	1.34\|631129\|33\|NZ_CP045761\|PILER-CR	631129-631161	33	MN693992	Marine virus AFVG_250M87, complete genome	20635-20667	9	0.727
NZ_CP045761_1	1.34\|631129\|33\|NZ_CP045761\|PILER-CR	631129-631161	33	MN694247	Marine virus AFVG_250M89, complete genome	5764-5796	9	0.727
NZ_CP045761_1	1.34\|631129\|33\|NZ_CP045761\|PILER-CR	631129-631161	33	MN693850	Marine virus AFVG_250M88, complete genome	8595-8627	9	0.727
NZ_CP045761_1	1.6\|630640\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	630640-630671	32	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	146209-146240	10	0.688
NZ_CP045761_1	1.13\|631067\|32\|NZ_CP045761\|CRISPRCasFinder,CRT	631067-631098	32	NZ_CP015091	Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence	91994-92025	10	0.688

1. spacer 1.7|630701|32|NZ_CP045761|CRISPRCasFinder,CRT matches to NZ_CP014707 (Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence) position: , mismatch: 0, identity: 1.0

agaaatcgcgcaagcgtctggcgacgtgtgac	CRISPR spacer
agaaatcgcgcaagcgtctggcgacgtgtgac	Protospacer
********************************

2. spacer 1.7|630701|32|NZ_CP045761|CRISPRCasFinder,CRT matches to CP053410 (Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

agaaatcgcgcaagcgtctggcgacgtgtgac	CRISPR spacer
agaaatcgcgcaagcgtctggcgacgtgtgac	Protospacer
********************************

3. spacer 1.27|630702|33|NZ_CP045761|PILER-CR matches to NZ_CP014707 (Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence) position: , mismatch: 0, identity: 1.0

agaaatcgcgcaagcgtctggcgacgtgtgacc	CRISPR spacer
agaaatcgcgcaagcgtctggcgacgtgtgacc	Protospacer
*********************************

4. spacer 1.27|630702|33|NZ_CP045761|PILER-CR matches to CP053410 (Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

agaaatcgcgcaagcgtctggcgacgtgtgacc	CRISPR spacer
agaaatcgcgcaagcgtctggcgacgtgtgacc	Protospacer
*********************************

5. spacer 1.7|630701|32|NZ_CP045761|CRISPRCasFinder,CRT matches to NZ_KY515226 (Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence) position: , mismatch: 2, identity: 0.938

agaaatcgcgcaagcgtctggcgacgtgtgac	CRISPR spacer
agaaaccgcgcaagcgtctggcgtcgtgtgac	Protospacer
*****.***************** ********

6. spacer 1.7|630701|32|NZ_CP045761|CRISPRCasFinder,CRT matches to NZ_KP763470 (Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence) position: , mismatch: 2, identity: 0.938

agaaatcgcgcaagcgtctggcgacgtgtgac	CRISPR spacer
agaaaccgcgcaagcgtctggcgtcgtgtgac	Protospacer
*****.***************** ********

7. spacer 1.27|630702|33|NZ_CP045761|PILER-CR matches to NZ_KP763470 (Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence) position: , mismatch: 3, identity: 0.909

agaaatcgcgcaagcgtctggcgacgtgtgacc	CRISPR spacer
agaaaccgcgcaagcgtctggcgtcgtgtgact	Protospacer
*****.***************** ********.

8. spacer 1.27|630702|33|NZ_CP045761|PILER-CR matches to NZ_KY515226 (Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence) position: , mismatch: 3, identity: 0.909

agaaatcgcgcaagcgtctggcgacgtgtgacc	CRISPR spacer
agaaaccgcgcaagcgtctggcgtcgtgtgact	Protospacer
*****.***************** ********.

9. spacer 1.6|630640|32|NZ_CP045761|CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

gcgctggcggcggttatcgctctgttcaattc	CRISPR spacer
gcgctggcggcggtgatcgcgctggggagttg	Protospacer
************** ***** ***   *.**

10. spacer 1.6|630640|32|NZ_CP045761|CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 7, identity: 0.781

gcgctggcggcggttatcgctctgttcaattc	CRISPR spacer
gcgctggcggcggtgatcgcgctggggagttg	Protospacer
************** ***** ***   *.**

11. spacer 1.13|631067|32|NZ_CP045761|CRISPRCasFinder,CRT matches to NZ_CP045296 (Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcatggcatcggcaatatcgccatagcg	CRISPR spacer
ttaagcatggcatcggcaatatggccgaaggc	Protospacer
 * ******************* ***. **

12. spacer 1.8|630762|32|NZ_CP045761|CRISPRCasFinder,CRT matches to MT711976 (Streptomyces phage Coruscant, complete genome) position: , mismatch: 8, identity: 0.75

cgatgcggttgcaaatggcatctggcggcgca-	CRISPR spacer
ggatgcagttgcaaaaggcatct-gcaatacaa	Protospacer
 *****.******** ******* **....**

13. spacer 1.13|631067|32|NZ_CP045761|CRISPRCasFinder,CRT matches to NZ_CP031599 (Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcatggcatcggcaatatcgccatagcg	CRISPR spacer
gccagcatggcatcggtaatatagctccaccc	Protospacer
*.**************.***** **. .* *

14. spacer 1.13|631067|32|NZ_CP045761|CRISPRCasFinder,CRT matches to NC_042034 (Mycobacterium phage ChrisnMich, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcatggcatcggcaatatcgccatagcg	CRISPR spacer
gcctgcctgtcatcggcaatatcgccaagcag	Protospacer
*.* ** ** ***************** .  *

15. spacer 1.18|631372|32|NZ_CP045761|CRISPRCasFinder,CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

ttgctttcgcctgcgctgcggttgagcgtgtc	CRISPR spacer
agtatttcgcccgcgctgcggttgagctcgac	Protospacer
    *******.*************** .* *

16. spacer 1.26|630641|33|NZ_CP045761|PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.758

gcgctggcggcggttatcgctctgttcaattct	CRISPR spacer
gcgctggcggcggtgatcgcgctggggagttgg	Protospacer
************** ***** ***   *.**

17. spacer 1.26|630641|33|NZ_CP045761|PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 8, identity: 0.758

gcgctggcggcggttatcgctctgttcaattct	CRISPR spacer
gcgctggcggcggtgatcgcgctggggagttgg	Protospacer
************** ***** ***   *.**

18. spacer 1.14|631128|32|NZ_CP045761|CRISPRCasFinder,CRT matches to MN693862 (Marine virus AFVG_250M91, complete genome) position: , mismatch: 9, identity: 0.719

ttttctgaaagcgtcgcaccaagagccacggc	CRISPR spacer
acgttttgcagcgccgcaccaagaggcacggc	Protospacer
 . *.* . ****.*********** ******

19. spacer 1.14|631128|32|NZ_CP045761|CRISPRCasFinder,CRT matches to MN694690 (Marine virus AFVG_250M90, complete genome) position: , mismatch: 9, identity: 0.719

ttttctgaaagcgtcgcaccaagagccacggc	CRISPR spacer
acgttttgcagcgccgcaccaagaggcacggc	Protospacer
 . *.* . ****.*********** ******

20. spacer 1.14|631128|32|NZ_CP045761|CRISPRCasFinder,CRT matches to MN694690 (Marine virus AFVG_250M90, complete genome) position: , mismatch: 9, identity: 0.719

ttttctgaaagcgtcgcaccaagagccacggc	CRISPR spacer
acgttttgcagcgccgcaccaagaggcacggc	Protospacer
 . *.* . ****.*********** ******

21. spacer 1.14|631128|32|NZ_CP045761|CRISPRCasFinder,CRT matches to MN693992 (Marine virus AFVG_250M87, complete genome) position: , mismatch: 9, identity: 0.719

ttttctgaaagcgtcgcaccaagagccacggc	CRISPR spacer
acgttttgcagcgccgcaccaagaggcacggc	Protospacer
 . *.* . ****.*********** ******

22. spacer 1.14|631128|32|NZ_CP045761|CRISPRCasFinder,CRT matches to MN694247 (Marine virus AFVG_250M89, complete genome) position: , mismatch: 9, identity: 0.719

ttttctgaaagcgtcgcaccaagagccacggc	CRISPR spacer
acgttttgcagcgccgcaccaagaggcacggc	Protospacer
 . *.* . ****.*********** ******

23. spacer 1.14|631128|32|NZ_CP045761|CRISPRCasFinder,CRT matches to MN693850 (Marine virus AFVG_250M88, complete genome) position: , mismatch: 9, identity: 0.719

ttttctgaaagcgtcgcaccaagagccacggc	CRISPR spacer
acgttttgcagcgccgcaccaagaggcacggc	Protospacer
 . *.* . ****.*********** ******

24. spacer 1.16|631250|32|NZ_CP045761|CRISPRCasFinder,CRT matches to NC_016040 (Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence) position: , mismatch: 9, identity: 0.719

atggggcgcgacgttccagatgccccacttta-------	CRISPR spacer
atggggcgcgacggtgcagatgc-------tagcgggac	Protospacer
************* * *******       **

25. spacer 1.18|631372|32|NZ_CP045761|CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.719

ttgctttcgcctgcgctgcggttgagcgtgtc	CRISPR spacer
agtatttcgcccgcgctgcggttcagctcgac	Protospacer
    *******.*********** *** .* *

26. spacer 1.19|631433|32|NZ_CP045761|CRISPRCasFinder,CRT matches to MH590604 (Microbacterium phage ColaCorta, complete genome) position: , mismatch: 9, identity: 0.719

atgacaccgttatcgatgggccactcaccatc	CRISPR spacer
agcataccgttctcgatgagccactcacggaa	Protospacer
*  *.****** ******.********* .

27. spacer 1.19|631433|32|NZ_CP045761|CRISPRCasFinder,CRT matches to MT553340 (Microbacterium phage Glamour, complete genome) position: , mismatch: 9, identity: 0.719

atgacaccgttatcgatgggccactcaccatc	CRISPR spacer
agcataccgttctcgatgagccactcacggaa	Protospacer
*  *.****** ******.********* .

28. spacer 1.19|631433|32|NZ_CP045761|CRISPRCasFinder,CRT matches to MH513982 (Microbacterium phage Sansa, complete genome) position: , mismatch: 9, identity: 0.719

atgacaccgttatcgatgggccactcaccatc	CRISPR spacer
agcataccgttctcgatgagccactcacggaa	Protospacer
*  *.****** ******.********* .

29. spacer 1.19|631433|32|NZ_CP045761|CRISPRCasFinder,CRT matches to MH590606 (Microbacterium phage Andromedas, complete genome) position: , mismatch: 9, identity: 0.719

atgacaccgttatcgatgggccactcaccatc	CRISPR spacer
agcataccgttctcgatgagccactcacggaa	Protospacer
*  *.****** ******.********* .

30. spacer 1.19|631433|32|NZ_CP045761|CRISPRCasFinder,CRT matches to MG839027 (Microbacterium phage Eleri, complete genome) position: , mismatch: 9, identity: 0.719

atgacaccgttatcgatgggccactcaccatc	CRISPR spacer
agcataccgttctcgatgagccactcacggaa	Protospacer
*  *.****** ******.********* .

31. spacer 1.34|631129|33|NZ_CP045761|PILER-CR matches to MN693862 (Marine virus AFVG_250M91, complete genome) position: , mismatch: 9, identity: 0.727

ttttctgaaagcgtcgcaccaagagccacggcc	CRISPR spacer
acgttttgcagcgccgcaccaagaggcacggcc	Protospacer
 . *.* . ****.*********** *******

32. spacer 1.34|631129|33|NZ_CP045761|PILER-CR matches to MN694690 (Marine virus AFVG_250M90, complete genome) position: , mismatch: 9, identity: 0.727

ttttctgaaagcgtcgcaccaagagccacggcc	CRISPR spacer
acgttttgcagcgccgcaccaagaggcacggcc	Protospacer
 . *.* . ****.*********** *******

33. spacer 1.34|631129|33|NZ_CP045761|PILER-CR matches to MN694690 (Marine virus AFVG_250M90, complete genome) position: , mismatch: 9, identity: 0.727

ttttctgaaagcgtcgcaccaagagccacggcc	CRISPR spacer
acgttttgcagcgccgcaccaagaggcacggcc	Protospacer
 . *.* . ****.*********** *******

34. spacer 1.34|631129|33|NZ_CP045761|PILER-CR matches to MN693992 (Marine virus AFVG_250M87, complete genome) position: , mismatch: 9, identity: 0.727

ttttctgaaagcgtcgcaccaagagccacggcc	CRISPR spacer
acgttttgcagcgccgcaccaagaggcacggcc	Protospacer
 . *.* . ****.*********** *******

35. spacer 1.34|631129|33|NZ_CP045761|PILER-CR matches to MN694247 (Marine virus AFVG_250M89, complete genome) position: , mismatch: 9, identity: 0.727

ttttctgaaagcgtcgcaccaagagccacggcc	CRISPR spacer
acgttttgcagcgccgcaccaagaggcacggcc	Protospacer
 . *.* . ****.*********** *******

36. spacer 1.34|631129|33|NZ_CP045761|PILER-CR matches to MN693850 (Marine virus AFVG_250M88, complete genome) position: , mismatch: 9, identity: 0.727

ttttctgaaagcgtcgcaccaagagccacggcc	CRISPR spacer
acgttttgcagcgccgcaccaagaggcacggcc	Protospacer
 . *.* . ****.*********** *******

37. spacer 1.6|630640|32|NZ_CP045761|CRISPRCasFinder,CRT matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 10, identity: 0.688

gcgctggcggcggttatcgctctgttcaattc	CRISPR spacer
gcgctggcggcggttctcgccctcgcggtgcc	Protospacer
*************** ****.**  . .  .*

38. spacer 1.13|631067|32|NZ_CP045761|CRISPRCasFinder,CRT matches to NZ_CP015091 (Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence) position: , mismatch: 10, identity: 0.688

gtcagcatggcatcggcaatatcgccatagcg	CRISPR spacer
cgcagcatggcatcaccaatatcgcggtgatc	Protospacer
  ************. ********* .*...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

349753 : 473335

110

Cronobacter_phage(44.44%)

transposase,plate,head,portal,holin,tail,integrase,terminase,tRNA,capsid

attL 466662:466678|attR 478115:478131

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001134569.1\|349753_350305_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000253558.1\|350329_350965_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_002954249.1\|350968_352333_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_002954248.1\|352343_353237_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_002954247.1\|353352_354207_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_023186140.1\|354262_354523_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	6.5e-18	53.5
WP_000986043.1\|354657_355038_-	holo-ACP synthase	NA	NA	NA	NA
WP_002954244.1\|355037_355769_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_002954243.1\|355780_356509_-	DNA repair protein RecO	NA	NA	NA	NA
WP_000102226.1\|356520_357426_-	GTPase Era	NA	NA	NA	NA
WP_001068341.1\|357422_358103_-	ribonuclease III	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
WP_000002558.1\|358376_359351_-	signal peptidase I	NA	NA	NA	NA
WP_000790154.1\|359367_361167_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
WP_002954242.1\|361418_361898_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_000812027.1\|361894_362851_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_001168376.1\|362850_363501_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_000003307.1\|363532_364108_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_125873061.1\|364104_364269_-	rpoE leader peptide RseD	NA	NA	NA	NA
WP_000989166.1\|364532_366155_+	L-aspartate oxidase	NA	NA	NA	NA
WP_000083350.1\|366139_366877_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219178.1\|367006_368341_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.2e-43	29.7
WP_000627811.1\|368456_368840_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
WP_002954241.1\|369158_369848_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	2.7e-55	49.5
WP_002954240.1\|369962_371000_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_002954239.1\|371193_371613_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	3.0e-17	40.8
WP_002954238.1\|371685_372384_+	DTW domain-containing protein	NA	NA	NA	NA
WP_002954237.1\|372420_375081_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949281.1\|375195_376551_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_002954236.1\|376595_376919_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_002954235.1\|376915_378217_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.8e-44	31.3
WP_002954234.1\|378320_378776_-	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	6.6e-34	50.0
WP_002954306.1\|384950_387524_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	5.3e-128	35.6
WP_002954305.1\|387653_388385_-	polyphenol oxidase	NA	NA	NA	NA
WP_024139406.1\|388381_389362_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197658.1\|389493_390231_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178449.1\|390502_390841_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_039511383.1\|390998_391385_+	hypothetical protein	NA	NA	NA	NA
WP_024139405.1\|392938_394639_-	hypothetical protein	F1BUJ7	Cronobacter_phage	2.9e-223	81.1
WP_000200789.1\|394641_395187_-	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
WP_002954300.1\|395158_395884_-	hypothetical protein	F1BUK1	Cronobacter_phage	8.6e-68	56.4
WP_002954299.1\|395873_396419_-\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	3.3e-88	89.5
WP_002954298.1\|396431_398546_-	hypothetical protein	S4TP62	Salmonella_phage	3.5e-186	65.6
WP_001001824.1\|398555_399143_-	hypothetical protein	F1BUK5	Cronobacter_phage	1.1e-89	82.1
WP_002954297.1\|399135_400320_-\|plate	phage baseplate	F1BUK6	Cronobacter_phage	1.5e-178	78.1
WP_002954296.1\|400316_400646_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_002954295.1\|400642_402610_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	4.3e-271	70.5
WP_000411498.1\|402797_403055_-	hypothetical protein	A5X9I7	Aeromonas_virus	3.1e-20	61.0
WP_000376378.1\|403201_403534_-	hypothetical protein	F1BUL2	Cronobacter_phage	4.4e-35	70.0
WP_000175558.1\|403533_403875_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
WP_001154426.1\|403871_404168_-\|holin	holin	C7BGD7	Burkholderia_phage	2.4e-16	48.2
WP_000166745.1\|404180_404636_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.7e-58	71.5
WP_001534842.1\|404632_405760_-	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	5.6e-175	83.2
WP_001534848.1\|405756_406461_-	hypothetical protein	F1BUL6	Cronobacter_phage	1.8e-70	59.9
WP_001534864.1\|406457_406940_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	3.0e-37	48.7
WP_031622697.1\|406936_407428_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	3.0e-48	63.3
WP_000505908.1\|407482_407674_-	hypothetical protein	NA	NA	NA	NA
WP_001534829.1\|407692_408391_-\|terminase	terminase	F1BUM0	Cronobacter_phage	3.6e-63	52.6
WP_002954293.1\|408402_409431_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	2.8e-133	71.6
WP_001534870.1\|409465_410302_-\|capsid	phage capsid scaffolding protein	F1BUM4	Cronobacter_phage	4.8e-46	49.2
WP_002954292.1\|410445_412230_+\|terminase	phage terminase	F1BUM5	Cronobacter_phage	3.5e-248	69.7
WP_001534877.1\|412226_413246_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.1e-136	68.5
WP_031622694.1\|413245_413575_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	8.7e-28	58.2
WP_001534889.1\|413618_414581_-	hypothetical protein	NA	NA	NA	NA
WP_002954291.1\|414718_417373_-	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	2.1e-241	46.6
WP_001534831.1\|417412_417631_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	2.8e-06	45.0
WP_002954290.1\|417633_418203_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.5e-43	47.4
WP_001534817.1\|418212_418545_-	hypothetical protein	NA	NA	NA	NA
WP_002954289.1\|418570_418909_-	phage regulatory protein	NA	NA	NA	NA
WP_000185337.1\|419006_419312_+	helix-turn-helix transcriptional regulator	A0A0M5M1I9	Salmonella_phage	1.6e-15	47.5
WP_024132356.1\|419378_420371_+\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	1.4e-108	58.2
WP_102025861.1\|420534_420582_+	hypothetical protein	NA	NA	NA	NA
WP_002954287.1\|420681_421842_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_002954286.1\|421802_422711_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000225181.1\|422768_423890_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168062.1\|423899_424970_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_001212372.1\|425410_425929_+	YfiR family protein	NA	NA	NA	NA
WP_002954283.1\|425921_427142_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	1.7e-07	37.0
WP_000065257.1\|427297_427645_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_002954282.1\|427685_428453_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043266.1\|428623_429172_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256453.1\|429190_429439_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460056.1\|429690_431052_-	signal recognition particle protein	NA	NA	NA	NA
WP_001664422.1\|431217_432009_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_127624524.1\|432028_433315_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_023187382.1\|433375_433969_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059150.1\|434092_434971_+	NAD(+) kinase	NA	NA	NA	NA
WP_002954280.1\|435056_436718_+	DNA repair protein RecN	NA	NA	NA	NA
WP_002954279.1\|436866_437205_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001112990.1\|437366_437657_-	RnfH family protein	NA	NA	NA	NA
WP_000242604.1\|437646_438123_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001518569.1\|438272_438755_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_002954276.1\|439374_450282_+	BapA prefix-like domain-containing protein	NA	NA	NA	NA
WP_002954275.1\|450346_451756_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_002954274.1\|451752_453933_+	type I secretion system permease/ATPase	F2Y2R6	Organic_Lake_phycodnavirus	9.9e-19	27.8
WP_072094795.1\|453940_455104_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_024139403.1\|455703_456933_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	2.7e-215	91.2
WP_002954272.1\|456971_457685_+	hypothetical protein	NA	NA	NA	NA
WP_024139402.1\|457819_458665_+	DNA adenine methylase	A0A0P0YLW3	Yellowstone_lake_mimivirus	5.7e-15	26.4
WP_002954270.1\|458683_460375_+	AAA family ATPase	NA	NA	NA	NA
WP_024139401.1\|460409_461042_+	hypothetical protein	NA	NA	NA	NA
WP_024139400.1\|461554_463681_-	hypothetical protein	NA	NA	NA	NA
WP_024139399.1\|463996_464437_+	hypothetical protein	NA	NA	NA	NA
WP_079791243.1\|464584_466204_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_079791242.1\|466285_467362_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
466662:466678	attL	NA	NA	NA	NA
WP_002953965.1\|467877_468192_+	hypothetical protein	NA	NA	NA	NA
WP_002953966.1\|468242_468668_-	hypothetical protein	NA	NA	NA	NA
WP_002953967.1\|468762_469161_-	hypothetical protein	NA	NA	NA	NA
WP_002953968.1\|469170_470775_-	hypothetical protein	NA	NA	NA	NA
WP_002953969.1\|470790_472116_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_002953970.1\|472066_473335_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
478115:478131	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2503883 : 2574724

uncultured_Mediterranean_phage(14.29%)

protease,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000753960.1\|2503883_2505311_+\|protease	serine endoprotease DegP	A0A1B1IT49	uncultured_Mediterranean_phage	5.5e-26	29.2
WP_000272192.1\|2506038_2506425_-	DUF3461 family protein	NA	NA	NA	NA
WP_002946960.1\|2506671_2507973_+	MHS family MFS transporter	NA	NA	NA	NA
WP_001186671.1\|2508009_2508834_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_001094537.1\|2508863_2511536_-	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_002946964.1\|2511643_2512438_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_000246886.1\|2512761_2513487_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_000808102.1\|2513742_2514594_+	elongation factor Ts	NA	NA	NA	NA
WP_000224567.1\|2514738_2515464_+	UMP kinase	NA	NA	NA	NA
WP_000622422.1\|2515610_2516168_+	ribosome recycling factor	NA	NA	NA	NA
WP_000811909.1\|2516309_2517506_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_000947408.1\|2517815_2518574_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	R9W0U9	Flavobacterium_phage	3.2e-25	42.2
WP_000922422.1\|2518586_2519444_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_000949022.1\|2519455_2520808_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240919.1\|2520839_2523272_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_002946985.1\|2523394_2523880_+	molecular chaperone Skp	NA	NA	NA	NA
WP_002946988.1\|2523883_2524909_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_002946990.1\|2525014_2525470_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565954.1\|2525473_2526262_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000741222.1\|2526261_2527410_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000569413.1\|2527406_2528003_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	2.5e-25	39.3
WP_024139237.1\|2528026_2531509_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.0e-207	36.7
WP_000055755.1\|2531521_2532481_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_002947153.1\|2532661_2534425_+	chitinase	NA	NA	NA	NA
WP_002947141.1\|2534501_2536643_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_002947139.1\|2536698_2537088_+	VOC family protein	NA	NA	NA	NA
WP_002947136.1\|2537150_2538449_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062326.1\|2538491_2538752_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_001518678.1\|2538738_2538939_-	YaeP family protein	NA	NA	NA	NA
WP_001185313.1\|2539136_2539682_+	YaeQ family protein	NA	NA	NA	NA
WP_000560532.1\|2539678_2540101_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_002947110.1\|2540132_2540834_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_001260679.1\|2540907_2542626_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_024139236.1\|2542733_2543441_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202313.1\|2543437_2543842_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874218.1\|2543960_2544776_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001287490.1\|2544814_2545468_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_002947095.1\|2545460_2546492_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	2.5e-36	40.6
WP_002947093.1\|2546681_2547248_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_002955139.1\|2553848_2554124_+	hypothetical protein	A0A1B5FPC6	Escherichia_phage	8.4e-08	41.0
WP_002955141.1\|2554674_2555532_+	hypothetical protein	NA	NA	NA	NA
WP_002955143.1\|2555698_2555842_-	hypothetical protein	NA	NA	NA	NA
WP_000737718.1\|2555879_2556218_-	hypothetical protein	NA	NA	NA	NA
WP_002955144.1\|2556220_2557084_-	phage lysin	NA	NA	NA	NA
WP_000013178.1\|2557118_2557598_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_002955145.1\|2557622_2558972_-	hypothetical protein	NA	NA	NA	NA
WP_031622830.1\|2558982_2562507_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_002955147.1\|2562523_2563927_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_002955148.1\|2563931_2564693_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_002955149.1\|2564689_2567440_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.8e-86	31.6
WP_031622831.1\|2567448_2568186_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002955151.1\|2568265_2569609_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_000147698.1\|2569611_2570145_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002955152.1\|2570141_2571431_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_024139506.1\|2571447_2572494_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002955154.1\|2572460_2574296_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002955155.1\|2574295_2574724_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_3

3145342 : 3184309

Salmonella_phage(15.38%)

transposase,bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079791240.1\|3145342_3145825_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	6.2e-14	31.5
WP_002951970.1\|3146436_3147330_+	virulence genes transcriptional activator SpvR	NA	NA	NA	NA
WP_001576629.1\|3147503_3147668_+	glycoside hydrolase family protein	A0A0M4R365	Salmonella_phage	3.3e-12	63.0
WP_002951990.1\|3147841_3148453_+	hypothetical protein	NA	NA	NA	NA
WP_001526987.1\|3148415_3148583_+	hypothetical protein	NA	NA	NA	NA
WP_002951998.1\|3148634_3150416_+	SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB	NA	NA	NA	NA
WP_024139308.1\|3150695_3151421_+	type III secretion system effector phosphothreonine lyase SpvC	NA	NA	NA	NA
WP_024139309.1\|3151683_3152334_+	SPI-2 type III secretion system effector cysteine hydrolase SpvD	NA	NA	NA	NA
WP_153648987.1\|3153851_3154868_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_139387167.1\|3155792_3156002_+	hypothetical protein	A0A077SLN2	Escherichia_phage	2.8e-24	76.8
WP_139387166.1\|3156014_3156608_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SLN2	Escherichia_phage	1.7e-82	83.2
WP_126487936.1\|3157032_3157350_+	hypothetical protein	NA	NA	NA	NA
WP_002953204.1\|3158041_3158446_-	hypothetical protein	NA	NA	NA	NA
WP_002953208.1\|3159853_3160399_+	glycoside hydrolase family 19 protein	T1SBJ3	Salmonella_phage	3.6e-79	79.4
WP_153648988.1\|3161338_3162235_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
WP_000658251.1\|3163210_3163390_+	hypothetical protein	NA	NA	NA	NA
WP_161715685.1\|3163634_3163829_-\|bacteriocin	colicin V family bacteriocin	NA	NA	NA	NA
WP_001663761.1\|3164173_3164413_-	DinI family protein	K7PKR6	Enterobacteria_phage	9.8e-29	81.0
WP_001160724.1\|3164724_3165048_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_002949837.1\|3165044_3165875_+	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	7.4e-07	29.9
WP_002949839.1\|3165871_3166885_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_001136497.1\|3166980_3168414_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000566418.1\|3168424_3169426_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_000815320.1\|3169464_3171183_-	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	8.3e-29	24.3
WP_024139270.1\|3171309_3172278_-	NADH oxidoreductase	NA	NA	NA	NA
WP_002949850.1\|3172289_3173942_-	hydroxylamine reductase	NA	NA	NA	NA
WP_000491122.1\|3174085_3174985_-	lysine exporter LysO family protein	NA	NA	NA	NA
WP_000599758.1\|3175185_3176844_+	ATP-dependent endonuclease	NA	NA	NA	NA
WP_001663762.1\|3176840_3177791_-	VirK/YbjX family protein	NA	NA	NA	NA
WP_001201746.1\|3177936_3179055_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.1e-08	38.9
WP_002949857.1\|3179051_3180998_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	5.9e-39	42.2
WP_000447499.1\|3181136_3181358_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520774.1\|3181681_3182002_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934070.1\|3182032_3184309_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.7e-165	42.1

DBSCAN-SWA_4

4196440 : 4210391

Phage_Gifsy-2(27.27%)

integrase,tail

attL 4193982:4193998|attR 4208047:4208063

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4193982:4193998	attL	NA	NA	NA	NA
WP_153648996.1\|4196440_4198552_-	E3 ubiquitin--protein ligase	Q9MBL9	Phage_Gifsy-2	6.9e-25	45.7
WP_079791287.1\|4198806_4198983_-	hypothetical protein	Q8HAB3	Salmonella_phage	1.3e-06	65.9
WP_153648997.1\|4200364_4202731_-	E3 ubiquitin--protein ligase	Q9MBL9	Phage_Gifsy-2	3.8e-24	45.7
WP_077907681.1\|4202887_4203340_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	8.8e-55	73.0
WP_002953407.1\|4203420_4204245_-	hypothetical protein	Q8HAB4	Salmonella_phage	2.0e-36	40.2
WP_002953404.1\|4204675_4205359_+	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	2.7e-87	74.3
WP_000597305.1\|4205941_4206220_+	hypothetical protein	A0A2L1IV28	Escherichia_phage	1.8e-26	55.4
WP_001240607.1\|4206219_4206504_+	HigA family addiction module antidote protein	A0A2L1IV52	Escherichia_phage	4.7e-22	54.5
WP_139387176.1\|4206662_4207001_-	T3SS effector NleG family protein	B6DZB9	Enterobacteria_phage	1.2e-19	47.3
WP_071594981.1\|4207637_4208039_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.8e-27	49.2
WP_000746717.1\|4208405_4208756_-	YebY family protein	NA	NA	NA	NA
4208047:4208063	attR	NA	NA	NA	NA
WP_002953395.1\|4208772_4209648_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_001664129.1\|4209648_4210023_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000856224.1\|4210160_4210391_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3

DBSCAN-SWA_5

4383555 : 4394829

Paramecium_bursaria_Chlorella_virus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000704818.1\|4383555_4384722_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	5.3e-112	53.2
WP_002953882.1\|4384957_4386364_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.2e-36	28.3
WP_153649001.1\|4386536_4387907_-	colanic acid biosynthesis phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	6.4e-32	27.3
WP_002953996.1\|4387903_4388668_-	glycosyltransferase	A0A1V0SAH6	Catovirus	1.3e-10	34.7
WP_002953995.1\|4388770_4390165_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	2.0e-60	32.4
WP_002953994.1\|4390174_4390621_-	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA
WP_002953993.1\|4390630_4391593_-	GDP-L-fucose synthase	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	5.8e-88	51.4
WP_002953992.1\|4391596_4392718_-	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	1.0e-128	65.4
WP_002953991.1\|4392736_4393738_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_002953990.1\|4393806_4394829_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	3.4e-86	48.3

DBSCAN-SWA_6

4465996 : 4474553

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195344.1\|4465996_4468030_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	4.7e-55	27.6
WP_002954031.1\|4468270_4468729_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.4e-54	73.9
WP_000950420.1\|4468870_4469341_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.0e-74	92.1
WP_002954032.1\|4469387_4470107_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272840.1\|4470103_4471789_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	3.8e-276	90.7
WP_002954033.1\|4472011_4472743_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.1e-102	88.4
WP_001261696.1\|4472802_4472910_+	protein YohO	NA	NA	NA	NA
WP_000824860.1\|4472890_4473622_-	ABC transporter permease	NA	NA	NA	NA
WP_002954034.1\|4473605_4474553_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	1.8e-09	27.4

Anti-CRISPR protein detection

Acr_ID: NZ_CP045761.1|WP_000856224.1|4210160_4210391_+|DNA-polymerase-III-subunit-theta

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP045761.1|WP_000856224.1|4210160_4210391_+|DNA-polymerase-III-subunit-theta

4210160_4210391_+

76 aa aa

4196440-4210391

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP045761_2	Orphan	2.1\|3457478\|35\|NZ_CP045761\|CRT	3457478-3457512	35	4197850-4197816	2
NZ_CP045761_2	Orphan	2.2\|3457538\|35\|NZ_CP045761\|CRT	3457538-3457572	35	4201903-4201869	1
NZ_CP045761_2	Orphan	2.2\|3457538\|35\|NZ_CP045761\|CRT	3457538-3457572	35	4201963-4201929	2
NZ_CP045761_2	Orphan	2.2\|3457538\|35\|NZ_CP045761\|CRT	3457538-3457572	35	4202023-4201989	2

1. spacer 2.1|3457478|35|NZ_CP045761|CRT matches to NZ_CP045761 position: 4197850-4197816, mismatch: 2

ctgccgccaggactacaggagctgattgtctctaa	CRISPR spacer
ctgccgccaggactacggaagctgattgtctctaa	Protospacer
****************.*.****************

2. spacer 2.2|3457538|35|NZ_CP045761|CRT matches to NZ_CP045761 position: 4201903-4201869, mismatch: 1

ctgccgccaggactacgggagctggaggtctttgg	CRISPR spacer
ctgccgccaggactacgggagctggaggtctctgg	Protospacer
*******************************.***

3. spacer 2.2|3457538|35|NZ_CP045761|CRT matches to NZ_CP045761 position: 4201963-4201929, mismatch: 2

ctgccgccaggactacgggagctggaggtctttgg	CRISPR spacer
ctgccgccaggactacgggagctggagatctctgg	Protospacer
***************************.***.***

4. spacer 2.2|3457538|35|NZ_CP045761|CRT matches to NZ_CP045761 position: 4202023-4201989, mismatch: 2

ctgccgccaggactacgggagctggaggtctttgg	CRISPR spacer
ctgccgccaggactacgggagctggagatctctgg	Protospacer
***************************.***.***

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045761

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information