CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP045790	Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence	1 crisprs	NA	0	1	6	0
NZ_CP045789	Campylobacter jejuni strain CFSAN032806 chromosome, complete genome	1 crisprs	cas2,cas1,cas9,csa3,DEDDh	0	14	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045790_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045790_1

32297-32392

Orphan

Consensus_repeat	Method
AGAAATCATTACATTTAAGTCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045790_1

>merge|NZ_CP045790|1|32297-32392|CRISPRCasFinder
AGAAATCATTACATTTAAGTCAATTGTTTTTTTAAAGTCCCTATTTTCCATATGTTATTTTCGTAAAAATGTCAAAAATCATTACATTTAAGTCAA

>NZ_CP045790|1|1|32297-32392|CRISPRCasFinder
AGAAATCATTACATTTAAGTCAA	TTGTTTTTTTAAAGTCCCTATTTTCCATATGTTATTTTCGTAAAAATGTC
AAAAATCATTACATTTAAGTCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045790.1\|WP_021083574.1\|28779_29391_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045790.1\|WP_031263757.1\|24990_25602_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350289
NZ_CP045790.1\|WP_002801489.1\|26337_27726_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP045790.1\|WP_002790340.1\|32830_33034_+\|addiction-module-toxin,-HicA-family	unknown	unknown	gnl\|CDD\|224638
NZ_CP045790.1\|WP_002823310.1\|30136_31363_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226990
NZ_CP045790.1\|WP_079275893.1\|18941_24737_+\|helicase	unknown	unknown	gnl\|CDD\|226993
NZ_CP045790.1\|WP_021034322.1\|31480_31774_+\|EexN-family-lipoprotein	unknown	unknown	unknown
NZ_CP045790.1\|WP_057036742.1\|33037_34831_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|238545
NZ_CP045790.1\|WP_057036741.1\|28470_28752_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045790.1\|WP_002779628.1\|40071_40623_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045790.1\|WP_002803413.1\|34960_35575_-\|resolvase	unknown	unknown	gnl\|CDD\|184041
NZ_CP045790.1\|WP_021034330.1\|27725_28277_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045790.1\|WP_002779627.1\|39517_40075_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NZ_CP045790.1\|WP_002801138.1\|35571_35979_-\|vapd	unknown	unknown	gnl\|CDD\|225846
NZ_CP045790.1\|WP_002823273.1\|31852_32128_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045790.1\|WP_002779625.1\|36462_36726_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP045790.1\|WP_021083573.1\|29394_30054_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045790.1\|WP_002801148.1\|32619_32838_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP045790.1\|WP_002779624.1\|35969_36293_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045790.1\|WP_021034332.1\|36738_39507_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346

Protein	Function_ID	Function_description	E-value
NZ_CP045790.1\|WP_002803413.1\|34960_35575_-\|resolvase	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	1.1543e-37
NZ_CP045790.1\|WP_031263757.1\|24990_25602_+\|NYN-domain-containing-protein	gnl\|CDD\|350289	cd18722, PIN_NicB-like, LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins. Curiously NicB from Pseudomonas putida S16 is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine. This subfamily also includes the uncharacterized CPP15 (plasmid) protein from Campylobacter jejuni. This subfamily belongs to LabA-like PIN domain family which includes Synechococcus elongatus PCC 7942 LabA, human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	9.67711e-26
NZ_CP045790.1\|WP_002801489.1\|26337_27726_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	4.91898e-05
NZ_CP045790.1\|WP_002823310.1\|30136_31363_+\|hypothetical-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	1.3304e-26
NZ_CP045790.1\|WP_002790340.1\|32830_33034_+\|addiction-module-toxin,-HicA-family	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	6.85308e-14
NZ_CP045790.1\|WP_002779627.1\|39517_40075_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	3.85249e-36
NZ_CP045790.1\|WP_057036742.1\|33037_34831_+\|AAA-family-ATPase	gnl\|CDD\|238545	cd01125, repA, Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.	1.49086e-13
NZ_CP045790.1\|WP_002801138.1\|35571_35979_-\|vapd	gnl\|CDD\|225846	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown].	2.07007e-09
NZ_CP045790.1\|WP_079275893.1\|18941_24737_+\|helicase	gnl\|CDD\|226993	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair].	1.99633e-71
NZ_CP045790.1\|WP_002779625.1\|36462_36726_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	1.41173e-06
NZ_CP045790.1\|WP_002801148.1\|32619_32838_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.74784e-11
NZ_CP045790.1\|WP_021034332.1\|36738_39507_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0

>NZ_CP045790.1|WP_002823273.1|31852_32128_-|hypothetical-protein
MCKIIKYLDYARLNTLEKLYFDLTIMLIVTFLSFLFLVFEFFIYENIAVFFQDCFLMSVIFIIGMIGLFHTCKGLRKYKEILKSNKREEFI
>NZ_CP045790.1|WP_021034322.1|31480_31774_+|EexN-family-lipoprotein
MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAKTDTECANAYEARYSKSFDYKPQVSTKELMQKAREQNKNMELK
>NZ_CP045790.1|WP_002823310.1|30136_31363_+|hypothetical-protein
MPQKRIYLYVPFKDKEKAKSLGAMWDDKEKKWFAPKTLDKNIFSQWLYPHQKKEFSFDENEVLTAFKSALENQGLIIEGLPIMDGKIHRVKTTNDKGRELSGAYSGFLDDYPAGFVQNFKTGIKENWKMPIEKNQSNNIKNSQKLHEQIKKDQELREKEILTLQEKTALKLEDEYNNAKWANSNHAYLKKKGFDENFYLKQDKMGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTQEEKDQGVEYLAKKQGCFHIIGAKTLHNLKEFYICEGFATAATIYKALNKPVIMGVDAGNLSKIVETLKNKFENTPITLIADNDKKRELKGLSNVGVETAKEIQQRFSDIKVIIPKISDQEAGQGVSDFNDIFLNKGLDEVKKQLNFIDFHNKLKAFKSMEKTQPEKEITR
>NZ_CP045790.1|WP_021083573.1|29394_30054_+|hypothetical-protein
MNNTINFNELFSQIRLYSYDNNIVKHYDNLKLVGKITPKIATLEIILRNKLDNKLSEQDSNWIKNSNDENIKKAKDEIEKREKNRILSHHQYLSRISLGTIIYLIKENRMQDSIMNLKNINFRNYNQYNRNFFLKNGKKRNFGNIYKVDIVLSLLQNLRNRSYHWENILKTTEKNSKHYPRLTTKIENVYIGINPQKIELFLDDLIKTFDERILKYCQD
>NZ_CP045790.1|WP_021083574.1|28779_29391_+|hypothetical-protein
MEKDYKIKVTDVSELNEQYKEAIQEGTYEGEDVNKFFNTIKTFDIAESLLKKDFSNQYIKFDIITDKEKIPLNIRLGDKNFEKGIEHLINIGSSKISKENINPEIKKDLNNQLGTYKPKVYDEMLDGTFKALKNLSEVANKDIGVMISEFANSYSETREKFEKKQINKKSFFKEKMNEFFKKKLNKILPDREISNEKTYSRSR
>NZ_CP045790.1|WP_057036741.1|28470_28752_+|hypothetical-protein
MLKESKLIEELKREYDEKLKKLLQKEKENKERIFKKFSSALFKDFEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKQ
>NZ_CP045790.1|WP_021034330.1|27725_28277_-|hypothetical-protein
MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSCDTDEKNKINDEICKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLLLNSIKNEKLFTNIEIDEFIKTRTEINAIGKNIYQLLKILRSGNSVKINENNLNKTMDNIRDKIDILSDQLGAIIEKNNERI
>NZ_CP045790.1|WP_002801489.1|26337_27726_-|relaxase/mobilization-nuclease-domain-containing-protein
MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNRDKYTKDIKTGKLISKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDRYAGEDEILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMYPNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFAKALNELGVEAKATNKKQREVEINQEFSVKLNANNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSYYVSYKTKKGITTIWGQDLERVVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEVVKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRVLQELGNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGERGRSDNILRWTSARNNEIKRDG
>NZ_CP045790.1|WP_031263757.1|24990_25602_+|NYN-domain-containing-protein
MEAKELAKRLKDYVWETLRRNEDYLHRVYIYDCEPLDKNVPMPPIEKTDKSKNLSKTTTYKFRSELLNHLRKQPYFAVRLGEIDENSFQWKFRDYDKFRKILRKEIDICELTSEDFVLDIKQKGVDMKIGLDIATLANKHHAEKIILITADSDFIPAVKHARKEGIIVQLDPMRIPETQIKKGLLEHIDILSSVFINKNKNGN
>NZ_CP045790.1|WP_079275893.1|18941_24737_+|helicase
MSKKTKRQIEDEKDYGGRSLFDLIELEFSQGEENEQQNRELSEHREVTDNIERTSISSNTPSVDRQENSAIQFDNTREMGRVLSEHNQESRNVRSHDTSITTSSNGISNFGEQRSEQEERSGANRYGDTSGRADKSQSIHSNRTPNLFSFISRNDDERQGTGTRRDNQQSVLETATRNDGYERRSLKSGQKLDFVSDDEIYLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKEFKELISTLDYVEYEKAKTSTLDAFYTPKIIIDTIYQGLNQLGFNNDGHTKEIFEPSAGIGSFLSYAKNYSDKYHFTCVELDTISANILKHLHPNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDTTLNKTSVHNYFIGNAIKNLKEDGIAAFVVSSYFLDSKNSTIRNYIAEQATFLGAVRLPNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYDDRFDEAEKRGMHPDVFNDFRINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKTLPKNIYKYQETKIKLSYYRIDRESPEYEKYSKTLSKLKDGNYFEYNNEIYMKIRSDDELVFSKPVLNEHDTRRIKKLIALRDQFNTLIEYEKNESSDLLVENQRKYLNKLYDEFVAKEGYLNRDANKKAFREDVEANKILALEKNYSSGISKSVALKEGIDPIAPSATKADIFFKRTINAQKEIKISTPKEALIASINEYGRIDLKFLETNLNQPLEETLKSLEQDKLIFKDHKNPANYVLAEKYLSGNVKAKHKEVKKLVEDGFNEFVNNLESLEQVLPKDLKAVDISISLGTTWIPIKYYKQFIEETLQITPKDYDLFLMEKTGEWSLKGFGHSLSPYIRSQYATEKIGCFDLFEHGLLRKPIRIYDKKLDPSGKEIRELNPKETAIANSKLENLKNEFIEWIYKDYDRRTDLENIYNERFNTNIEPQYNGEHLELPNFNANIKLKKHQKNAIYRAIQENSIIFDHQVGAGKTLVAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEFYHAYTNANILVATNDDLKKDNREKFFSKITTNNFDAIIMTHSQFKLIPAPYEVIKKQYEEDINILEQTLEKKQNDDNVMRYSVKDLEKRIENFKVKLSDLQTTHKKSKAIDFSELGIDALIIDEAHEFKNLLITTSMGDISGLGNLKGSQKAYDLYSKTQYIHEQNKKLYFLTGTPISNSITELYTLQRYIQPNILKEKGIQAFDSWASTFGEVTNAWELDSSGINYKIVARFNKFKNVPELSTMYKSVADIVTNNDIMKYQKDFVPKLYNDKPINIVAPRSEEIAEFIGIQDENGRWNEGSIVWRMEHQQDDITRNNLLACTTDARKAGLDFRLINPHCDDYANSKINKLIENVFNEYNAWNDDKGTQLIFCDLSTPKQHSQKVALNGNIATPNLNKEEFVNINETIEQTEEENSKSLDELLAEQAKFDVYTDILKKLVAKGIPQNEIRFIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQFRKAGADVRTLEDVTSGAADAAEMKAEATGNPLILLQVQLNSDLRQEEMLYSGYKRQIHNNEESLITNLSKIELLKKDIAKMEILNSIIKENNSEHFQGKYYINDDEKDFIVFKNDTSDLNKSRQAELERNFEKIVKTIADDYQKEYKVLEFKGLLISGERTDLNTLNFYVSTTDGKTIIEPENLIYKRDEKTFFKLESYVNFGGFVKRLNNFYNDLEKFTQLNKNKIENLEKEIVELKSITGDNTPKYKRKDYLEALREDNRIIMDEIEKMSKQKNYKSDFVPKSAKILEDLNKHNKILKDRELLI
>NZ_CP045790.1|WP_002801148.1|32619_32838_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDQDGYFARILELEGCVSQGNTYEEALVNIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NZ_CP045790.1|WP_002790340.1|32830_33034_+|addiction-module-toxin,-HicA-family
MPELPRMTAKEAEKLLLQNDFSIDRQKGSHRIYKKGLYRMVIPHHSGEILHPKIIKQLFEIIEVAKD
>NZ_CP045790.1|WP_057036742.1|33037_34831_+|AAA-family-ATPase
MPKRNTIETITLGLFSDEDVSIICEDTIKLERGSVAVLSGNSEVGKSFLALKVCANAINDGLKPFFWSVEDKNKAILERIKNIESFYSFNTAELEFSNELPKINKEPINCLKEELNKLADCDLIVLDTFSAFFSTLGFKDQNNQNDVQNFFNILTDIAKSNNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFEKGEDKNSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPSIVNLRANSIDSNTLEIINKKDISAVSVNELAKGYVTMNENRGVFYLSSRKLTDTNFYKVFKENDNKIDFKMTGANGSSYAISLKNSLLTQTHRNILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKNSNNYSWLKQKFTEISRFAYDLAFTQNVEDKDKKTITQRDKGILMFDSVERITKENGTIVSVFVLTVRREYIKKLETESTLSYDDDLSKILINLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYKFYKENSIISRQKKEIIKLKDKLIEFGINIYGKGVEFADYDDEFFHNKYKNENDLFFIYQSNNKVKRYIKRDDPMNQLNTKDNRFLLQKSLFD
>NZ_CP045790.1|WP_002803413.1|34960_35575_-|resolvase
MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIILDEILEVKISSTKSQEKRKIKDLKQRLQSGDLLIATELSRLGRSMLEIINLVLEFNANNINFLFLRQRELSNFNNPSSKLILSIYAYLAENERDLISQRTKAGLENAKASGKKLGRPKGSLNSIYDKDIDKIQTLLDKDLSIRSIWKLFYKDSGKTYDGLLWFIKKRKLKQK
>NZ_CP045790.1|WP_002801138.1|35571_35979_-|vapd
MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPIDERRVARIVTKLAKKFTWFGECVKEFDITEIGEQYSLKDTIQNLCIKEINKQAGYNKDFHGKFKEFTQKTPKNQKLKDLER
>NZ_CP045790.1|WP_002779624.1|35969_36293_-|hypothetical-protein
MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKINKETYHCKGDKYDLGCMALFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEGEGIWE
>NZ_CP045790.1|WP_002779625.1|36462_36726_+|TrbC/VirB2-family-protein
MKIKLLSLILLSPIFVFAAGGIDKVNTFMENLSTALYALGAVLLTIAFMWGGSKIMFQGQTLREVAPIFIGGVIFGSASAIAGYIIT
>NZ_CP045790.1|WP_021034332.1|36738_39507_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MEKNPLFKGLTRPPMIFGVPMTPFVIAMGSIILVAFYSQNIFLVGFSIPVFFIMKAMTKKDDFIFRLMFLKMRFFSNPASKNYYKAKTYSTNSYRQMPPNSNFPKISVFGLNAEPNFEKLIPFSSLINDSVVITKDYLLMTTWEIGGISFEAEDDDELDIKNDLLNMLFKSFANEPVSFYFHNCRYSIEDKLTSKFNNAFLEEIDRKYYESFKQGTLKKNSLYLTLIFNPLKVKIEKTTFMKSSFENKRKTISVFLAKFSEFADRLEANIKDFNPKRLKTYSKDDKTYSKQLEFYNYLLGGKFNPIRVLPNPIDQYLNGNLQNIQFGHDTIQFNQNDSTKRFARCIEIKDYTNETFAGILDILMYLDVEYTITQSFSPIPRVDAKSAISKQKKQLIATEDDGFSQVEQIDEALDQLTNGEISFGKYHFSILVYGNTIKECKDNTNEVVTKMNELGFGVTLATIALPATFFSQLPSNFAIRPRINLISSINFSSLIALHNFSMGKRDKNCWGDAVSILKTPNKQPYYFNFHQSSGVNKNDFGELFLANTLILGQSSGGKTVFMNFIVDQMMKYASKDTFPDDIPEENRKFTAIYLDKDKGALGNILCAGGRYISIENGKPTGFNPFMVENTQENIRQLQSLMKLLVTRNNEILTTREEEMLNNAVNSLMKGFEKEERKYPISLLLENLTENVDDDNSLKSRLALFKKGKQFGWVFDNEYDNLDFPDDINLFGIDGTEFLDDKDVSEILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSVEDFLKLKNATTLIEQSATMVFLPNPKAKEEEYVKGVGLSYDEYMIIKGFNVAKRQFLIKRQDEKVICTLDLSSLGNENLKILSTGTAHIDTIEKIFSQENKSLDEKVLELKEFYKNS
>NZ_CP045790.1|WP_002779627.1|39517_40075_+|Rha-family-transcriptional-regulator
MSNKVIINKQEVQFGTQDNQIFCTSLDVAKVFGKEHKNILRDIENILNDLREIGTSNCLLNFELSFKVHKIQGFKGRERKYPYYNLTRDGFSLLAMGFTGKEALQWKILFIDAFNEMQKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVTITDNPYSKEAKNVFSLNYLVDNRTPKDPKKLQ
>NZ_CP045790.1|WP_002779628.1|40071_40623_+|hypothetical-protein
MSDKELEIFELCERLVDLLGDKEAVADLQTLLERHPEMFQNKEQVANLIKKVIHDPEIIINNPTPKSEKDYIAGKKLNEKKMGEVGIRKDENISKIFHANEKRIKNLELMAKKDVVVDGRNAHTSYTQAQSLDGRLVQKNISSATNKIIPQQNKSTNDFKAKLEEFSTKKTNAVKSINKEFKR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_KJ646012	Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence	39947-39996	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP045793	Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence	2492-2541	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NC_017282	Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence	33083-33132	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP013035	Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence	5473-5522	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP007752	Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence	6604-6653	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP014745	Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence	72201-72250	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP023546	Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence	3064-3113	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	77864-77913	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP011017	Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence	25209-25258	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP044168	Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence	11714-11763	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP040609	Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence	4066-4115	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP017861	Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence	11000-11049	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP043764	Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence	30424-30473	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP007750	Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence	5167-5216	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP048762	Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence	17612-17661	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_MK541988	Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence	9361-9410	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_MK541989	Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence	33146-33195	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NC_022354	Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence	34776-34825	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_KX686749	Campylobacter coli strain Tx40 plasmid unnamed, complete sequence	16533-16582	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP007182	Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence	17073-17122	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NC_006134	Campylobacter coli plasmid pCC31, complete sequence	20905-20954	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP007180	Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence	20269-20318	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP010073	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence	8503-8552	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP023544	Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence	18106-18155	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	CP002030	Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence	18942-18991	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP017418	Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence	13094-13143	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP017419	Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence	13120-13169	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP017866	Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence	40967-41016	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP017879	Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence	4231-4280	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP017416	Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence	13533-13582	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP017872	Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence	6212-6261	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP020775	Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence	21028-21077	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NC_022355	Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence	18073-18122	0	1.0
NZ_CP045790_1	1.1\|32320\|50\|NZ_CP045790\|CRISPRCasFinder	32320-32369	50	NZ_CP017869	Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence	18541-18590	1	0.98

1. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_KJ646012 (Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

2. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP045793 (Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

3. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NC_017282 (Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

4. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP013035 (Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

5. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP007752 (Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

6. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

7. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP023546 (Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

8. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

9. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP011017 (Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

10. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP044168 (Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

11. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP040609 (Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

12. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP017861 (Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

13. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP043764 (Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

14. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP007750 (Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

15. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP048762 (Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

16. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_MK541988 (Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

17. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_MK541989 (Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

18. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NC_022354 (Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

19. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_KX686749 (Campylobacter coli strain Tx40 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

20. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP007182 (Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

21. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NC_006134 (Campylobacter coli plasmid pCC31, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

22. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP007180 (Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

23. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP010073 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

24. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP023544 (Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

25. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to CP002030 (Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

26. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP017418 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

27. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP017419 (Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

28. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP017866 (Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

29. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP017879 (Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

30. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP017416 (Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

31. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP017872 (Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

32. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP020775 (Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

33. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NC_022355 (Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	Protospacer
**************************************************

34. spacer 1.1|32320|50|NZ_CP045790|CRISPRCasFinder matches to NZ_CP017869 (Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence) position: , mismatch: 1, identity: 0.98

ttgtttttttaaagtccctattttccatatgttattttcgtaaaaatgtc	CRISPR spacer
ttgtttttttaaagtccctattttccatatgttcttttcgtaaaaatgtc	Protospacer
********************************* ****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 7682

Streptococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002834241.1\|427_1849_+	hypothetical protein	NA	NA	NA	NA
WP_021034342.1\|2132_3053_-	aminoglycoside O-phosphotransferase APH(2'')-Ig	A0A0N9SKF6	Staphylococcus_phage	1.1e-22	28.7
WP_021034343.1\|3751_5671_+	tetracycline resistance ribosomal protection protein Tet(O)	A0A1B0RXH7	Streptococcus_phage	0.0e+00	98.4
WP_002779755.1\|5722_5896_+	conjugal transfer protein	D0R0F6	Streptococcus_phage	4.6e-28	100.0
WP_002578723.1\|6911_7682_+	nucleoside phosphorylase	F5CA76	Streptococcus_phi-m46.1-like_phage	1.8e-44	57.7

DBSCAN-SWA_2

10811 : 12834

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_107131212.1\|10811_11408_+	AAA family ATPase	E4ZFP8	Streptococcus_phage	2.6e-94	100.0
WP_000627290.1\|11404_11947_+	streptothricin N-acetyltransferase Sat4	A0A1B0RXL7	Streptococcus_phage	8.9e-94	100.0
WP_001096887.1\|12039_12834_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	E4ZFP6	Streptococcus_phage	2.3e-154	100.0

DBSCAN-SWA_3

17740 : 25602

Campylobacter_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002779704.1\|17740_18007_+	hypothetical protein	A0A2R3ZY63	Campylobacter_phage	6.8e-39	90.4
WP_002790730.1\|18065_18626_+	hypothetical protein	NA	NA	NA	NA
WP_002823208.1\|18628_18895_+	hypothetical protein	NA	NA	NA	NA
WP_079275893.1\|18941_24737_+	helicase	I3PUW5	Vibrio_phage	1.2e-284	39.8
WP_031263757.1\|24990_25602_+	NYN domain-containing protein	A4JWQ6	Burkholderia_virus	6.2e-27	43.3

DBSCAN-SWA_4

30136 : 31363

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002823310.1\|30136_31363_+	hypothetical protein	A0A1W6JT61	Escherichia_phage	2.3e-20	31.1

DBSCAN-SWA_5

34960 : 35575

Bacteroides_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002803413.1\|34960_35575_-	resolvase	H2A0H0	Bacteroides_phage	5.4e-15	33.0

DBSCAN-SWA_6

39517 : 41079

Campylobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002779627.1\|39517_40075_+	Rha family transcriptional regulator	X2KM03	Campylobacter_phage	7.4e-19	50.8
WP_002779628.1\|40071_40623_+	hypothetical protein	NA	NA	NA	NA
WP_002779629.1\|40656_41079_+	single-stranded DNA-binding protein	A9DEQ4	Yersinia_phage	1.7e-12	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP045789

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045789_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045789_1

1112802-1113301

TypeII

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR

7 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP045789_1

>merge|NZ_CP045789|1|1112802-1113301|CRISPRCasFinder,CRT,PILER-CR
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTGTGGTGTGCTTGGGTCTGTATTTATATCAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAGATGCTTTAACAGTATGTTCTTTAGCAGGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATACTTTTTCACAATATGGTAAAGTAGTTGTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATATTTAATGTTGTGTAAAGTGATAATGGTACGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATATATCCATCTTTCATATCTTTGATTTTAACGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAACTGCTATAAGAGGAGCTACTGGTCAAGAAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGCACCTGTTTTTGATTGAACGAAGCAACCAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

>NZ_CP045789|1|1|1112802-1113301|CRISPRCasFinder
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATT	GTGGTGTGCTTGGGTCTGTATTTATATCA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	GATGCTTTAACAGTATGTTCTTTAGCAGG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	CTTTTTCACAATATGGTAAAGTAGTTGTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	TTTAATGTTGTGTAAAGTGATAATGGTAC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	TATCCATCTTTCATATCTTTGATTTTAAC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	ACTGCTATAAGAGGAGCTACTGGTCAAGAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATG	CACCTGTTTTTGATTGAACGAAGCAACCA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

>NZ_CP045789|1|1|1112802-1113301|CRT
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATT	GTGGTGTGCTTGGGTCTGTATTTATATCA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	GATGCTTTAACAGTATGTTCTTTAGCAGG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	CTTTTTCACAATATGGTAAAGTAGTTGTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	TTTAATGTTGTGTAAAGTGATAATGGTAC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	TATCCATCTTTCATATCTTTGATTTTAAC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	ACTGCTATAAGAGGAGCTACTGGTCAAGAA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATG	CACCTGTTTTTGATTGAACGAAGCAACCA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

>NZ_CP045789|1|1|1112803-1113300|PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATT	GTGGTGTGCTTGGGTCTGTATTTATATCAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	GATGCTTTAACAGTATGTTCTTTAGCAGGG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	CTTTTTCACAATATGGTAAAGTAGTTGTAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	TTTAATGTTGTGTAAAGTGATAATGGTACG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	TATCCATCTTTCATATCTTTGATTTTAACG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	ACTGCTATAAGAGGAGCTACTGGTCAAGAAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATG	CACCTGTTTTTGATTGAACGAAGCAACCAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045789.1\|WP_002872138.1\|1120428_1121034_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP045789.1\|WP_057036709.1\|1108015_1109164_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP045789.1\|WP_002781229.1\|1111041_1111488_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP045789.1\|WP_057036708.1\|1109276_1110818_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP045789.1\|WP_002851546.1\|1123584_1124034_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP045789.1\|WP_002797819.1\|1113868_1114759_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP045789.1\|WP_079264288.1\|1104028_1106833_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NZ_CP045789.1\|WP_057036707.1\|1111491_1112682_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP045789.1\|WP_002872139.1\|1121030_1121780_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP045789.1\|WP_002851537.1\|1106832_1107024_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP045789.1\|WP_002851155.1\|1122482_1123520_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP045789.1\|WP_002851320.1\|1119378_1120368_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP045789.1\|WP_024088174.1\|1106998_1107712_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP045789.1\|WP_002851174.1\|1102461_1103394_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NZ_CP045789.1\|WP_002872140.1\|1121754_1122486_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|225539
NZ_CP045789.1\|WP_002895475.1\|1114755_1117710_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP045789.1\|WP_002851264.1\|1103390_1104032_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP045789.1\|WP_002779488.1\|1110819_1111041_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP045789.1\|WP_002855462.1\|1124163_1125384_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235168
NZ_CP045789.1\|WP_002797817.1\|1113444_1113876_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043

Protein	Function_ID	Function_description	E-value
NZ_CP045789.1\|WP_002872138.1\|1120428_1121034_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	8.91047e-68
NZ_CP045789.1\|WP_057036709.1\|1108015_1109164_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP045789.1\|WP_002781229.1\|1111041_1111488_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
NZ_CP045789.1\|WP_057036708.1\|1109276_1110818_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.58604e-118
NZ_CP045789.1\|WP_002851546.1\|1123584_1124034_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_CP045789.1\|WP_002797819.1\|1113868_1114759_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.93781e-121
NZ_CP045789.1\|WP_079264288.1\|1104028_1106833_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP045789.1\|WP_057036707.1\|1111491_1112682_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	8.33419e-143
NZ_CP045789.1\|WP_002872139.1\|1121030_1121780_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	7.0307e-91
NZ_CP045789.1\|WP_002851537.1\|1106832_1107024_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP045789.1\|WP_002851155.1\|1122482_1123520_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.54942e-34
NZ_CP045789.1\|WP_002851320.1\|1119378_1120368_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP045789.1\|WP_024088174.1\|1106998_1107712_-\|hypothetical-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.000158962
NZ_CP045789.1\|WP_002851174.1\|1102461_1103394_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.78832e-90
NZ_CP045789.1\|WP_002872140.1\|1121754_1122486_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	4.70824e-101
NZ_CP045789.1\|WP_002895475.1\|1114755_1117710_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP045789.1\|WP_002851264.1\|1103390_1104032_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP045789.1\|WP_002779488.1\|1110819_1111041_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP045789.1\|WP_002855462.1\|1124163_1125384_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP045789.1\|WP_002797817.1\|1113444_1113876_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.92184e-59

>NZ_CP045789.1|WP_057036707.1|1111491_1112682_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECGMLENESLVDIIFMP
>NZ_CP045789.1|WP_002781229.1|1111041_1111488_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP045789.1|WP_002779488.1|1110819_1111041_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP045789.1|WP_057036708.1|1109276_1110818_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATIEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHFTTSKQVFMGLAGAFVIKAKKDALSHLKERDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGEFRLESAYYDRDKMMVEEEPNTLFLASISLKKENLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHVHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP045789.1|WP_057036709.1|1108015_1109164_-|carboxynorspermidine-decarboxylase
MFYENIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKQYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_CP045789.1|WP_024088174.1|1106998_1107712_-|hypothetical-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIALAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP045789.1|WP_002851537.1|1106832_1107024_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP045789.1|WP_079264288.1|1104028_1106833_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPINTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP045789.1|WP_002851264.1|1103390_1104032_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP045789.1|WP_002851174.1|1102461_1103394_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRMLPASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP045789.1|WP_002797817.1|1113444_1113876_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_CP045789.1|WP_002797819.1|1113868_1114759_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP045789.1|WP_002895475.1|1114755_1117710_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NZ_CP045789.1|WP_002851320.1|1119378_1120368_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKILENSDAFIIGEICINEGIVLE
>NZ_CP045789.1|WP_002872138.1|1120428_1121034_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLDFKSISADKIAHKILDENALELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKTRLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>NZ_CP045789.1|WP_002872139.1|1121030_1121780_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAEIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNFS
>NZ_CP045789.1|WP_002872140.1|1121754_1122486_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP045789.1|WP_002851155.1|1122482_1123520_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF
>NZ_CP045789.1|WP_002851546.1|1123584_1124034_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NZ_CP045789.1|WP_002855462.1|1124163_1125384_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDESLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045789_1	1.1\|1112839\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1112839-1112867	29	MN530981	Campylobacter phage DA10, complete genome	3258-3286	0	1.0
NZ_CP045789_1	1.5\|1113103\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113103-1113131	29	MN530981	Campylobacter phage DA10, complete genome	24735-24763	0	1.0
NZ_CP045789_1	1.6\|1113169\|30\|NZ_CP045789\|CRISPRCasFinder,CRT	1113169-1113198	30	MN530981	Campylobacter phage DA10, complete genome	9916-9945	0	1.0
NZ_CP045789_1	1.7\|1113236\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113236-1113264	29	MN530981	Campylobacter phage DA10, complete genome	13944-13972	0	1.0
NZ_CP045789_1	1.8\|1112839\|30\|NZ_CP045789\|PILER-CR	1112839-1112868	30	MN530981	Campylobacter phage DA10, complete genome	3257-3286	0	1.0
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	MN530981	Campylobacter phage DA10, complete genome	24734-24763	0	1.0
NZ_CP045789_1	1.13\|1113169\|31\|NZ_CP045789\|PILER-CR	1113169-1113199	31	MN530981	Campylobacter phage DA10, complete genome	9916-9946	0	1.0
NZ_CP045789_1	1.14\|1113236\|30\|NZ_CP045789\|PILER-CR	1113236-1113265	30	MN530981	Campylobacter phage DA10, complete genome	13943-13972	0	1.0
NZ_CP045789_1	1.2\|1112905\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1112905-1112933	29	MN530981	Campylobacter phage DA10, complete genome	30207-30235	1	0.966
NZ_CP045789_1	1.3\|1112971\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1112971-1112999	29	MN530981	Campylobacter phage DA10, complete genome	1772-1800	1	0.966
NZ_CP045789_1	1.4\|1113037\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113037-1113065	29	MN530981	Campylobacter phage DA10, complete genome	4022-4050	1	0.966
NZ_CP045789_1	1.9\|1112905\|30\|NZ_CP045789\|PILER-CR	1112905-1112934	30	MN530981	Campylobacter phage DA10, complete genome	30207-30236	1	0.967
NZ_CP045789_1	1.10\|1112971\|30\|NZ_CP045789\|PILER-CR	1112971-1113000	30	MN530981	Campylobacter phage DA10, complete genome	1772-1801	1	0.967
NZ_CP045789_1	1.11\|1113037\|30\|NZ_CP045789\|PILER-CR	1113037-1113066	30	MN530981	Campylobacter phage DA10, complete genome	4021-4050	1	0.967
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	245985-246014	4	0.867
NZ_CP045789_1	1.3\|1112971\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1112971-1112999	29	LC519601	Cronobacter phage vB_CsaP_009 DNA, complete genome	63756-63784	5	0.828
NZ_CP045789_1	1.3\|1112971\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1112971-1112999	29	MN812223	Flavobacterium phage vB_FspS_mumin6-4, complete genome	18716-18744	5	0.828
NZ_CP045789_1	1.3\|1112971\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1112971-1112999	29	MN812227	Flavobacterium phage vB_FspS_mymlan6-1, complete genome	19196-19224	5	0.828
NZ_CP045789_1	1.3\|1112971\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1112971-1112999	29	MN812222	Flavobacterium phage vB_FspS_mumin6-3, complete genome	18716-18744	5	0.828
NZ_CP045789_1	1.5\|1113103\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113103-1113131	29	NC_017296	Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence	42290-42318	5	0.828
NZ_CP045789_1	1.5\|1113103\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113103-1113131	29	NC_015686	Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence	42290-42318	5	0.828
NZ_CP045789_1	1.5\|1113103\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113103-1113131	29	NC_001988	Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence	42290-42318	5	0.828
NZ_CP045789_1	1.10\|1112971\|30\|NZ_CP045789\|PILER-CR	1112971-1113000	30	MN812223	Flavobacterium phage vB_FspS_mumin6-4, complete genome	18716-18745	5	0.833
NZ_CP045789_1	1.10\|1112971\|30\|NZ_CP045789\|PILER-CR	1112971-1113000	30	MN812227	Flavobacterium phage vB_FspS_mymlan6-1, complete genome	19196-19225	5	0.833
NZ_CP045789_1	1.10\|1112971\|30\|NZ_CP045789\|PILER-CR	1112971-1113000	30	MN812222	Flavobacterium phage vB_FspS_mumin6-3, complete genome	18716-18745	5	0.833
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	JN638751	Bacillus phage G, complete genome	262323-262352	5	0.833
NZ_CP045789_1	1.3\|1112971\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1112971-1112999	29	MT740244	Proteus phage 3H10_20, partial genome	21109-21137	6	0.793
NZ_CP045789_1	1.5\|1113103\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113103-1113131	29	NZ_CP036551	Bacteroides fragilis strain DCMOUH0042B plasmid pBFO42_1, complete sequence	5720-5748	6	0.793
NZ_CP045789_1	1.5\|1113103\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113103-1113131	29	NZ_KJ830768	Bacteroides fragilis strain 69566 plasmid pBF69566b, complete sequence	1055-1083	6	0.793
NZ_CP045789_1	1.5\|1113103\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113103-1113131	29	MF417868	Uncultured Caudovirales phage clone 7AX_1, partial genome	82443-82471	6	0.793
NZ_CP045789_1	1.7\|1113236\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113236-1113264	29	MW117965	Synechococcus phage S-H38, complete genome	9860-9888	6	0.793
NZ_CP045789_1	1.10\|1112971\|30\|NZ_CP045789\|PILER-CR	1112971-1113000	30	LC519601	Cronobacter phage vB_CsaP_009 DNA, complete genome	63755-63784	6	0.8
NZ_CP045789_1	1.10\|1112971\|30\|NZ_CP045789\|PILER-CR	1112971-1113000	30	NZ_CP053469	Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence	5846-5875	6	0.8
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	AP012341	Staphylococcus phage phi7401PVL DNA, complete genome	31811-31840	6	0.8
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	MG029515	Staphylococcus phage phiSa2wa_st80, complete genome	30237-30266	6	0.8
NZ_CP045789_1	1.1\|1112839\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1112839-1112867	29	NC_009928	Acaryochloris marina MBIC11017 plasmid pREB3, complete sequence	40433-40461	7	0.759
NZ_CP045789_1	1.2\|1112905\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1112905-1112933	29	MH542234	Staphylococcus phage Terranova, complete genome	102573-102601	7	0.759
NZ_CP045789_1	1.3\|1112971\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1112971-1112999	29	MT028297	Proteus phage Privateer, complete genome	20196-20224	7	0.759
NZ_CP045789_1	1.4\|1113037\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113037-1113065	29	MN694358	Marine virus AFVG_250M310, complete genome	19568-19596	7	0.759
NZ_CP045789_1	1.5\|1113103\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113103-1113131	29	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	118960-118988	7	0.759
NZ_CP045789_1	1.5\|1113103\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113103-1113131	29	JN638751	Bacillus phage G, complete genome	262323-262351	7	0.759
NZ_CP045789_1	1.7\|1113236\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113236-1113264	29	CP006878	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602a, complete sequence	31817-31845	7	0.759
NZ_CP045789_1	1.8\|1112839\|30\|NZ_CP045789\|PILER-CR	1112839-1112868	30	NC_009928	Acaryochloris marina MBIC11017 plasmid pREB3, complete sequence	40432-40461	7	0.767
NZ_CP045789_1	1.10\|1112971\|30\|NZ_CP045789\|PILER-CR	1112971-1113000	30	MT740244	Proteus phage 3H10_20, partial genome	21108-21137	7	0.767
NZ_CP045789_1	1.10\|1112971\|30\|NZ_CP045789\|PILER-CR	1112971-1113000	30	NZ_CP018299	Photobacterium damselae strain Phdp Wu-1 plasmid plas1, complete sequence	267044-267073	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	MG770897	Staphylococcus phage SH-St 15644, complete genome	10956-10985	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	MG029513	Staphylococcus phage phiSa2wa_st72, complete genome	32262-32291	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	AB045978	Staphylococcus phage phiSLT DNA, complete genome	27848-27877	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	KY056620	Staphylococcus phage P240, complete genome	11106-11135	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	MT366568	Staphylococcus phage R4, complete genome	11106-11135	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	JQ957932	Staphylococcus phage StauST398-2, complete genome	30689-30718	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	NC_002661	Staphylococcus phage phiSLT, complete genome	27848-27877	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	MK940809	Staphylococcus phage Sa2wa_st8, complete genome	30963-30992	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	EU861005	Staphylococcus phage phiSauS-IPLA35, complete genome	31057-31086	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	MG029509	Staphylococcus phage phiSa2wa_st5, complete genome	29872-29901	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	MG029517	Staphylococcus phage phiSa2wa_st93, complete genome	30962-30991	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	MG029516	Staphylococcus phage phiSa2wa_st93mssa, complete genome	30962-30991	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	MK801680	Staphylococcus phage SAP8, complete genome	11117-11146	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	MK801681	Staphylococcus phage SAP11, complete genome	9608-9637	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	MF417868	Uncultured Caudovirales phage clone 7AX_1, partial genome	82442-82471	7	0.767
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	JQ779023	Staphylococcus phage SMSAP5, complete genome	34389-34418	7	0.767
NZ_CP045789_1	1.14\|1113236\|30\|NZ_CP045789\|PILER-CR	1113236-1113265	30	MW117965	Synechococcus phage S-H38, complete genome	9860-9889	7	0.767
NZ_CP045789_1	1.14\|1113236\|30\|NZ_CP045789\|PILER-CR	1113236-1113265	30	CP006878	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602a, complete sequence	31816-31845	7	0.767
NZ_CP045789_1	1.14\|1113236\|30\|NZ_CP045789\|PILER-CR	1113236-1113265	30	MT334653	Buttiauxella phage vB_ButM_GuL6, complete genome	59359-59388	7	0.767
NZ_CP045789_1	1.2\|1112905\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1112905-1112933	29	NC_014389	Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence	340622-340650	8	0.724
NZ_CP045789_1	1.5\|1113103\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113103-1113131	29	MT773554	Myoviridae sp. isolate BML_2 genomic sequence	84750-84778	8	0.724
NZ_CP045789_1	1.7\|1113236\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113236-1113264	29	NZ_LR134418	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9	350898-350926	8	0.724
NZ_CP045789_1	1.7\|1113236\|29\|NZ_CP045789\|CRISPRCasFinder,CRT	1113236-1113264	29	MT334653	Buttiauxella phage vB_ButM_GuL6, complete genome	59359-59387	8	0.724
NZ_CP045789_1	1.9\|1112905\|30\|NZ_CP045789\|PILER-CR	1112905-1112934	30	MH542234	Staphylococcus phage Terranova, complete genome	102573-102602	8	0.733
NZ_CP045789_1	1.10\|1112971\|30\|NZ_CP045789\|PILER-CR	1112971-1113000	30	MT028297	Proteus phage Privateer, complete genome	20195-20224	8	0.733
NZ_CP045789_1	1.11\|1113037\|30\|NZ_CP045789\|PILER-CR	1113037-1113066	30	MN694358	Marine virus AFVG_250M310, complete genome	19568-19597	8	0.733
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	118960-118989	8	0.733
NZ_CP045789_1	1.12\|1113103\|30\|NZ_CP045789\|PILER-CR	1113103-1113132	30	MT773554	Myoviridae sp. isolate BML_2 genomic sequence	84749-84778	8	0.733
NZ_CP045789_1	1.9\|1112905\|30\|NZ_CP045789\|PILER-CR	1112905-1112934	30	NC_014389	Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence	340622-340651	9	0.7
NZ_CP045789_1	1.14\|1113236\|30\|NZ_CP045789\|PILER-CR	1113236-1113265	30	NZ_LR134418	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9	350898-350927	9	0.7

1. spacer 1.1|1112839|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

gtggtgtgcttgggtctgtatttatatca	CRISPR spacer
gtggtgtgcttgggtctgtatttatatca	Protospacer
*****************************

2. spacer 1.5|1113103|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tatccatctttcatatctttgattttaac	CRISPR spacer
tatccatctttcatatctttgattttaac	Protospacer
*****************************

3. spacer 1.6|1113169|30|NZ_CP045789|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

actgctataagaggagctactggtcaagaa	CRISPR spacer
actgctataagaggagctactggtcaagaa	Protospacer
******************************

4. spacer 1.7|1113236|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

cacctgtttttgattgaacgaagcaacca	CRISPR spacer
cacctgtttttgattgaacgaagcaacca	Protospacer
*****************************

5. spacer 1.8|1112839|30|NZ_CP045789|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tgtggtgtgcttgggtctgtatttatatca	CRISPR spacer
tgtggtgtgcttgggtctgtatttatatca	Protospacer
******************************

6. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

atatccatctttcatatctttgattttaac	CRISPR spacer
atatccatctttcatatctttgattttaac	Protospacer
******************************

7. spacer 1.13|1113169|31|NZ_CP045789|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

aactgctataagaggagctactggtcaagaa	CRISPR spacer
aactgctataagaggagctactggtcaagaa	Protospacer
*******************************

8. spacer 1.14|1113236|30|NZ_CP045789|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

gcacctgtttttgattgaacgaagcaacca	CRISPR spacer
gcacctgtttttgattgaacgaagcaacca	Protospacer
******************************

9. spacer 1.2|1112905|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

gatgctttaacagtatgttctttagcagg	CRISPR spacer
gatgctttaacagtatgttctttagcggg	Protospacer
**************************.**

10. spacer 1.3|1112971|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

ctttttcacaatatggtaaagtagttgta	CRISPR spacer
ctttttcacaatatggtaaagtagtggta	Protospacer
************************* ***

11. spacer 1.4|1113037|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

tttaatgttgtgtaaagtgataatggtac	CRISPR spacer
tttaatgttgtataaagtgataatggtac	Protospacer
***********.*****************

12. spacer 1.9|1112905|30|NZ_CP045789|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

agatgctttaacagtatgttctttagcagg	CRISPR spacer
agatgctttaacagtatgttctttagcggg	Protospacer
***************************.**

13. spacer 1.10|1112971|30|NZ_CP045789|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

actttttcacaatatggtaaagtagttgta	CRISPR spacer
actttttcacaatatggtaaagtagtggta	Protospacer
************************** ***

14. spacer 1.11|1113037|30|NZ_CP045789|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

atttaatgttgtgtaaagtgataatggtac	CRISPR spacer
atttaatgttgtataaagtgataatggtac	Protospacer
************.*****************

15. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 4, identity: 0.867

atatccatctttcatatctttgattttaac--	CRISPR spacer
atattcatctttcatatcttt--tttcaacca	Protospacer
****.****************  ***.***

16. spacer 1.3|1112971|29|NZ_CP045789|CRISPRCasFinder,CRT matches to LC519601 (Cronobacter phage vB_CsaP_009 DNA, complete genome) position: , mismatch: 5, identity: 0.828

ctttttcacaatatggtaaagtagttgta	CRISPR spacer
ctttttcagaatatggtaaagcagtttct	Protospacer
******** ************.**** .

17. spacer 1.3|1112971|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MN812223 (Flavobacterium phage vB_FspS_mumin6-4, complete genome) position: , mismatch: 5, identity: 0.828

ctttttcacaatatggtaaagtagttgta	CRISPR spacer
ctttttcattatatggtaaagtaggtaaa	Protospacer
********. ************** *. *

18. spacer 1.3|1112971|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MN812227 (Flavobacterium phage vB_FspS_mymlan6-1, complete genome) position: , mismatch: 5, identity: 0.828

ctttttcacaatatggtaaagtagttgta	CRISPR spacer
ctttttcattatatggtaaagtaggtaaa	Protospacer
********. ************** *. *

19. spacer 1.3|1112971|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MN812222 (Flavobacterium phage vB_FspS_mumin6-3, complete genome) position: , mismatch: 5, identity: 0.828

ctttttcacaatatggtaaagtagttgta	CRISPR spacer
ctttttcattatatggtaaagtaggtaaa	Protospacer
********. ************** *. *

20. spacer 1.5|1113103|29|NZ_CP045789|CRISPRCasFinder,CRT matches to NC_017296 (Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence) position: , mismatch: 5, identity: 0.828

tatccatctttcatatctttgattttaac	CRISPR spacer
tgttcataattcatatctttgattttaaa	Protospacer
*.*.***  *******************

21. spacer 1.5|1113103|29|NZ_CP045789|CRISPRCasFinder,CRT matches to NC_015686 (Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence) position: , mismatch: 5, identity: 0.828

tatccatctttcatatctttgattttaac	CRISPR spacer
tgttcataattcatatctttgattttaaa	Protospacer
*.*.***  *******************

22. spacer 1.5|1113103|29|NZ_CP045789|CRISPRCasFinder,CRT matches to NC_001988 (Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence) position: , mismatch: 5, identity: 0.828

tatccatctttcatatctttgattttaac	CRISPR spacer
tgttcataattcatatctttgattttaaa	Protospacer
*.*.***  *******************

23. spacer 1.10|1112971|30|NZ_CP045789|PILER-CR matches to MN812223 (Flavobacterium phage vB_FspS_mumin6-4, complete genome) position: , mismatch: 5, identity: 0.833

actttttcacaatatggtaaagtagttgta	CRISPR spacer
actttttcattatatggtaaagtaggtaaa	Protospacer
*********. ************** *. *

24. spacer 1.10|1112971|30|NZ_CP045789|PILER-CR matches to MN812227 (Flavobacterium phage vB_FspS_mymlan6-1, complete genome) position: , mismatch: 5, identity: 0.833

actttttcacaatatggtaaagtagttgta	CRISPR spacer
actttttcattatatggtaaagtaggtaaa	Protospacer
*********. ************** *. *

25. spacer 1.10|1112971|30|NZ_CP045789|PILER-CR matches to MN812222 (Flavobacterium phage vB_FspS_mumin6-3, complete genome) position: , mismatch: 5, identity: 0.833

actttttcacaatatggtaaagtagttgta	CRISPR spacer
actttttcattatatggtaaagtaggtaaa	Protospacer
*********. ************** *. *

26. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 5, identity: 0.833

-atatccatctttcatatctttgattttaac	CRISPR spacer
gatgt-catttttcatatcttttattttatc	Protospacer
 **.* ***.************ ****** *

27. spacer 1.3|1112971|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MT740244 (Proteus phage 3H10_20, partial genome) position: , mismatch: 6, identity: 0.793

ctttttcacaatatggtaaagtagttgta	CRISPR spacer
ctttttcagaatatggtaaagcagtatct	Protospacer
******** ************.***  .

28. spacer 1.5|1113103|29|NZ_CP045789|CRISPRCasFinder,CRT matches to NZ_CP036551 (Bacteroides fragilis strain DCMOUH0042B plasmid pBFO42_1, complete sequence) position: , mismatch: 6, identity: 0.793

tatccatctttcatatctttgattttaac	CRISPR spacer
tctccttctttcatatctttggttttttt	Protospacer
* *** ***************.****  .

29. spacer 1.5|1113103|29|NZ_CP045789|CRISPRCasFinder,CRT matches to NZ_KJ830768 (Bacteroides fragilis strain 69566 plasmid pBF69566b, complete sequence) position: , mismatch: 6, identity: 0.793

tatccatctttcatatctttgattttaac	CRISPR spacer
tctccttctttcatatctttggttttttt	Protospacer
* *** ***************.****  .

30. spacer 1.5|1113103|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MF417868 (Uncultured Caudovirales phage clone 7AX_1, partial genome) position: , mismatch: 6, identity: 0.793

tatccatctttcatatctttgattttaac	CRISPR spacer
tcttcatctttaatatctttgatattagt	Protospacer
* *.******* *********** ***..

31. spacer 1.7|1113236|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MW117965 (Synechococcus phage S-H38, complete genome) position: , mismatch: 6, identity: 0.793

cacctgtttttgattgaacgaagcaacca	CRISPR spacer
tagaagtttttgattgaaggaaacaacca	Protospacer
.*   ************* ***.******

32. spacer 1.10|1112971|30|NZ_CP045789|PILER-CR matches to LC519601 (Cronobacter phage vB_CsaP_009 DNA, complete genome) position: , mismatch: 6, identity: 0.8

actttttcacaatatggtaaagtagttgta	CRISPR spacer
gctttttcagaatatggtaaagcagtttct	Protospacer
.******** ************.**** .

33. spacer 1.10|1112971|30|NZ_CP045789|PILER-CR matches to NZ_CP053469 (Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

actttttcacaatatggtaaagtagttgta	CRISPR spacer
actttttcacaatatgataaacaaactgtt	Protospacer
****************.****  *..***

34. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to AP012341 (Staphylococcus phage phi7401PVL DNA, complete genome) position: , mismatch: 6, identity: 0.8

atatccatctttcatatcttt----gattttaac	CRISPR spacer
atagccatctttcatatcttttgaaaattt----	Protospacer
*** *****************    .****

35. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to MG029515 (Staphylococcus phage phiSa2wa_st80, complete genome) position: , mismatch: 6, identity: 0.8

atatccatctttcatatcttt----gattttaac	CRISPR spacer
atagccatctttcatatcttttgaaaattt----	Protospacer
*** *****************    .****

36. spacer 1.1|1112839|29|NZ_CP045789|CRISPRCasFinder,CRT matches to NC_009928 (Acaryochloris marina MBIC11017 plasmid pREB3, complete sequence) position: , mismatch: 7, identity: 0.759

gtggtgtgcttgggtctgtatttatatca	CRISPR spacer
ctcaattgcttgggtctgtttttatagca	Protospacer
 * .  ************* ****** **

37. spacer 1.2|1112905|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MH542234 (Staphylococcus phage Terranova, complete genome) position: , mismatch: 7, identity: 0.759

gatgctttaacagtatgttctttagcagg	CRISPR spacer
gttgctttaacattatgttctttttttgc	Protospacer
* ********** **********  . *

38. spacer 1.3|1112971|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MT028297 (Proteus phage Privateer, complete genome) position: , mismatch: 7, identity: 0.759

ctttttcacaatatggtaaagtagttgta	CRISPR spacer
ctttttcagaatatggtaaagctgtatct	Protospacer
******** ************. **  .

39. spacer 1.4|1113037|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MN694358 (Marine virus AFVG_250M310, complete genome) position: , mismatch: 7, identity: 0.759

tttaatgttgtgtaaagtgataatggtac	CRISPR spacer
gaaactgttgtgcaaattgataatggtag	Protospacer
   * *******.*** ***********

40. spacer 1.5|1113103|29|NZ_CP045789|CRISPRCasFinder,CRT matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 7, identity: 0.759

tatccatctttcatatctttgattttaac	CRISPR spacer
aacacttctttcatatctgtgattttagt	Protospacer
 *. * ************ ********..

41. spacer 1.5|1113103|29|NZ_CP045789|CRISPRCasFinder,CRT matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 7, identity: 0.759

tatccatctttcatatctttgattttaac	CRISPR spacer
atgtcatttttcatatcttttattttatc	Protospacer
   .***.************ ****** *

42. spacer 1.7|1113236|29|NZ_CP045789|CRISPRCasFinder,CRT matches to CP006878 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602a, complete sequence) position: , mismatch: 7, identity: 0.759

cacctgtttttgattgaacgaagcaacca	CRISPR spacer
ggtccgtttccgattgaacgaagcaaccg	Protospacer
 ..*.****..*****************.

43. spacer 1.8|1112839|30|NZ_CP045789|PILER-CR matches to NC_009928 (Acaryochloris marina MBIC11017 plasmid pREB3, complete sequence) position: , mismatch: 7, identity: 0.767

tgtggtgtgcttgggtctgtatttatatca	CRISPR spacer
tctcaattgcttgggtctgtttttatagca	Protospacer
* * .  ************* ****** **

44. spacer 1.10|1112971|30|NZ_CP045789|PILER-CR matches to MT740244 (Proteus phage 3H10_20, partial genome) position: , mismatch: 7, identity: 0.767

actttttcacaatatggtaaagtagttgta	CRISPR spacer
gctttttcagaatatggtaaagcagtatct	Protospacer
.******** ************.***  .

45. spacer 1.10|1112971|30|NZ_CP045789|PILER-CR matches to NZ_CP018299 (Photobacterium damselae strain Phdp Wu-1 plasmid plas1, complete sequence) position: , mismatch: 7, identity: 0.767

actttttcacaatatggtaaagtagttgta	CRISPR spacer
acttgttcacaataaggtaaagttcattaa	Protospacer
**** ********* ********   *  *

46. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to MG770897 (Staphylococcus phage SH-St 15644, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

47. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to MG029513 (Staphylococcus phage phiSa2wa_st72, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

48. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to AB045978 (Staphylococcus phage phiSLT DNA, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

49. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to KY056620 (Staphylococcus phage P240, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

50. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to MT366568 (Staphylococcus phage R4, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

51. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to JQ957932 (Staphylococcus phage StauST398-2, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

52. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to NC_002661 (Staphylococcus phage phiSLT, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

53. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to MK940809 (Staphylococcus phage Sa2wa_st8, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

54. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to EU861005 (Staphylococcus phage phiSauS-IPLA35, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

55. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to MG029509 (Staphylococcus phage phiSa2wa_st5, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

56. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to MG029517 (Staphylococcus phage phiSa2wa_st93, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

57. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to MG029516 (Staphylococcus phage phiSa2wa_st93mssa, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

58. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to MK801680 (Staphylococcus phage SAP8, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

59. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to MK801681 (Staphylococcus phage SAP11, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

60. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to MF417868 (Uncultured Caudovirales phage clone 7AX_1, partial genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatctttgattttaac	CRISPR spacer
gtcttcatctttaatatctttgatattagt	Protospacer
.* *.******* *********** ***..

61. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to JQ779023 (Staphylococcus phage SMSAP5, complete genome) position: , mismatch: 7, identity: 0.767

atatccatctttcatatcttt----gattttaac	CRISPR spacer
ataaccatctttcatatcttttgaaaactt----	Protospacer
*** *****************    .*.**

62. spacer 1.14|1113236|30|NZ_CP045789|PILER-CR matches to MW117965 (Synechococcus phage S-H38, complete genome) position: , mismatch: 7, identity: 0.767

gcacctgtttttgattgaacgaagcaacca	CRISPR spacer
atagaagtttttgattgaaggaaacaacca	Protospacer
..*   ************* ***.******

63. spacer 1.14|1113236|30|NZ_CP045789|PILER-CR matches to CP006878 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602a, complete sequence) position: , mismatch: 7, identity: 0.767

gcacctgtttttgattgaacgaagcaacca	CRISPR spacer
gggtccgtttccgattgaacgaagcaaccg	Protospacer
* ..*.****..*****************.

64. spacer 1.14|1113236|30|NZ_CP045789|PILER-CR matches to MT334653 (Buttiauxella phage vB_ButM_GuL6, complete genome) position: , mismatch: 7, identity: 0.767

-gcacctgtttttgattgaacgaagcaacca	CRISPR spacer
tgta-ttgtttttgattgaatcaagcaacgc	Protospacer
 *.* .**************. *******

65. spacer 1.2|1112905|29|NZ_CP045789|CRISPRCasFinder,CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 8, identity: 0.724

gatgctttaacagtatgttctttagcagg	CRISPR spacer
agtgctttaacaatatcttctttagttat	Protospacer
..**********.*** ********. .

66. spacer 1.5|1113103|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MT773554 (Myoviridae sp. isolate BML_2 genomic sequence) position: , mismatch: 8, identity: 0.724

tatccatctttcatatctttgattttaac	CRISPR spacer
atagaatctttaatatctttaattttaat	Protospacer
     ****** ********.*******.

67. spacer 1.7|1113236|29|NZ_CP045789|CRISPRCasFinder,CRT matches to NZ_LR134418 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9) position: , mismatch: 8, identity: 0.724

cacctgtttttgattgaacgaagcaacca	CRISPR spacer
gacctgtttatgatagaacgaagcttgtg	Protospacer
 ******** **** *********   ..

68. spacer 1.7|1113236|29|NZ_CP045789|CRISPRCasFinder,CRT matches to MT334653 (Buttiauxella phage vB_ButM_GuL6, complete genome) position: , mismatch: 8, identity: 0.724

cacctgtttttgattgaacgaagcaacca	CRISPR spacer
gtattgtttttgattgaatcaagcaacgc	Protospacer
   .**************. *******

69. spacer 1.9|1112905|30|NZ_CP045789|PILER-CR matches to MH542234 (Staphylococcus phage Terranova, complete genome) position: , mismatch: 8, identity: 0.733

agatgctttaacagtatgttctttagcagg	CRISPR spacer
tgttgctttaacattatgttctttttttgc	Protospacer
 * ********** **********  . *

70. spacer 1.10|1112971|30|NZ_CP045789|PILER-CR matches to MT028297 (Proteus phage Privateer, complete genome) position: , mismatch: 8, identity: 0.733

actttttcacaatatggtaaagtagttgta	CRISPR spacer
gctttttcagaatatggtaaagctgtatct	Protospacer
.******** ************. **  .

71. spacer 1.11|1113037|30|NZ_CP045789|PILER-CR matches to MN694358 (Marine virus AFVG_250M310, complete genome) position: , mismatch: 8, identity: 0.733

atttaatgttgtgtaaagtgataatggtac	CRISPR spacer
tgaaactgttgtgcaaattgataatggtag	Protospacer
    * *******.*** ***********

72. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 8, identity: 0.733

atatccatctttcatatctttgattttaac	CRISPR spacer
gaacacttctttcatatctgtgattttagt	Protospacer
. *. * ************ ********..

73. spacer 1.12|1113103|30|NZ_CP045789|PILER-CR matches to MT773554 (Myoviridae sp. isolate BML_2 genomic sequence) position: , mismatch: 8, identity: 0.733

atatccatctttcatatctttgattttaac	CRISPR spacer
aatagaatctttaatatctttaattttaat	Protospacer
*     ****** ********.*******.

74. spacer 1.9|1112905|30|NZ_CP045789|PILER-CR matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 9, identity: 0.7

agatgctttaacagtatgttctttagcagg	CRISPR spacer
cagtgctttaacaatatcttctttagttat	Protospacer
 ..**********.*** ********. .

75. spacer 1.14|1113236|30|NZ_CP045789|PILER-CR matches to NZ_LR134418 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 9) position: , mismatch: 9, identity: 0.7

gcacctgtttttgattgaacgaagcaacca	CRISPR spacer
agacctgtttatgatagaacgaagcttgtg	Protospacer
. ******** **** *********   ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

181888 : 240955

Campylobacter_phage(24.14%)

tRNA,plate,head,protease,integrase,tail,terminase,transposase

attL 230203:230220|attR 241121:241138

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002875506.1\|181888_183640_-\|tRNA	aspartate--tRNA ligase	A0A1V0SAC0	Catovirus	1.8e-10	24.6
WP_002859582.1\|183730_184591_+	NAD(+) kinase	NA	NA	NA	NA
WP_002875507.1\|184590_186114_+	DNA repair protein RecN	NA	NA	NA	NA
WP_002870095.1\|186219_187464_+	bile resistance response regulator CbrR	NA	NA	NA	NA
WP_052794366.1\|187454_188270_+	TatD family hydrolase	NA	NA	NA	NA
WP_002874294.1\|188269_189388_+	lytic transglycosylase domain-containing protein	A0A218M4G6	Pasteurella_phage	1.6e-09	34.1
WP_002852227.1\|189347_190175_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	5.6e-23	50.0
WP_002875509.1\|190180_190669_+	HAD-IIIA family hydrolase	A0A140XBD6	Dickeya_phage	2.5e-15	41.2
WP_057036754.1\|190659_191175_+	hypothetical protein	NA	NA	NA	NA
WP_052794365.1\|191156_191618_+	organic solvent tolerance protein OstA	NA	NA	NA	NA
WP_002859990.1\|191614_192211_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_002859588.1\|192207_192702_+	hypothetical protein	NA	NA	NA	NA
WP_002875511.1\|192702_194508_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_002868420.1\|194628_196419_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	1.6e-160	47.6
WP_057036755.1\|196434_197988_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.4e-128	47.7
WP_032582494.1\|198186_198609_-	hypothetical protein	A0A0P0IY73	Acinetobacter_phage	1.3e-28	50.8
WP_002875200.1\|199802_200351_-	hypothetical protein	NA	NA	NA	NA
WP_079264856.1\|200343_201450_-	hypothetical protein	NA	NA	NA	NA
WP_002867648.1\|201436_202312_-	GTPase Era	NA	NA	NA	NA
WP_002875198.1\|202308_203628_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	4.0e-39	28.2
WP_002781630.1\|203624_204167_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_002875197.1\|204166_204610_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_002867646.1\|204622_205843_-	argininosuccinate synthase	NA	NA	NA	NA
WP_002860004.1\|205997_206243_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_002858585.1\|206239_206647_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_002855252.1\|206639_207368_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-25	31.8
WP_002854994.1\|207367_208618_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_002875392.1\|209636_210686_+	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	5.3e-103	51.8
WP_002875393.1\|210678_212709_+	hypothetical protein	NA	NA	NA	NA
WP_002870152.1\|212774_213743_-\|tail	phage tail protein	A0A219Y9Y2	Aeromonas_phage	4.3e-14	26.8
WP_002789964.1\|213736_213928_-\|tail	tail protein	NA	NA	NA	NA
WP_002875691.1\|213920_214295_-\|tail	tail protein	NA	NA	NA	NA
WP_002789978.1\|216289_216520_+	hypothetical protein	NA	NA	NA	NA
WP_057036738.1\|216627_216864_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002865794.1\|216874_217390_-\|tail	tail protein	A0A0F7LDZ1	Escherichia_phage	5.8e-10	25.7
WP_019108978.1\|217536_218727_-\|tail	phage tail sheath family protein	A7YGA3	Campylobacter_phage	7.9e-196	99.0
WP_057036737.1\|218737_219751_-	hypothetical protein	A7YGH6	Campylobacter_phage	1.0e-191	98.8
WP_002938257.1\|219874_220246_-	DUF1353 domain-containing protein	A7YGH7	Campylobacter_phage	1.5e-68	100.0
WP_002924980.1\|220242_220749_-	DUF4376 domain-containing protein	A7YGA6	Campylobacter_phage	5.7e-87	99.4
WP_057036736.1\|220773_221805_-\|tail	phage tail protein	A7YGU3	Campylobacter_phage	2.2e-186	98.5
WP_002935514.1\|221804_222425_-\|tail	phage tail protein I	A7YGM6	Campylobacter_phage	9.6e-60	98.3
WP_057036735.1\|222522_223689_-\|plate	baseplate assembly protein	A0A1X9SH02	Bradyrhizobium_phage	3.3e-13	25.8
WP_002795239.1\|223685_223976_-\|plate	baseplate assembly protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_039332519.1\|224171_224804_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	7.1e-10	35.5
WP_002865847.1\|224800_225265_-	DUF1804 family protein	NA	NA	NA	NA
WP_002790001.1\|225395_226436_+	hypothetical protein	NA	NA	NA	NA
WP_002790002.1\|226435_227323_+\|head	head protein	A0A2K9VH18	Faecalibacterium_phage	3.5e-63	43.7
WP_002875630.1\|227322_227550_+	hypothetical protein	NA	NA	NA	NA
WP_002790896.1\|227546_227900_+	hypothetical protein	NA	NA	NA	NA
WP_002790266.1\|227896_228262_+	hypothetical protein	NA	NA	NA	NA
WP_002827121.1\|228251_228641_+	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	1.9e-21	47.1
WP_002827119.1\|228651_228993_+	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|228989_229238_+	hypothetical protein	NA	NA	NA	NA
WP_002790261.1\|229349_229664_+	hypothetical protein	NA	NA	NA	NA
WP_002865465.1\|229753_231280_+\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	6.4e-49	31.1
230203:230220	attL	NA	NA	NA	NA
WP_002913010.1\|231276_232659_+	DUF935 family protein	A0A0M3LRU4	Mannheimia_phage	6.3e-11	23.2
WP_002870187.1\|232775_233909_+	hypothetical protein	A0A1C6ZDL9	Pseudomonas_phage	5.1e-27	34.2
WP_002918728.1\|234047_234527_-	hypothetical protein	A7YGZ0	Campylobacter_phage	2.8e-06	30.2
WP_002918730.1\|234513_234705_-	hypothetical protein	NA	NA	NA	NA
WP_002909839.1\|234756_235185_-	hypothetical protein	NA	NA	NA	NA
WP_002864977.1\|235181_235361_-	hypothetical protein	NA	NA	NA	NA
WP_002791413.1\|235475_235862_-	hypothetical protein	D5GVQ0	Campylobacter_virus	2.7e-36	56.4
WP_002791414.1\|235858_236131_-	hypothetical protein	NA	NA	NA	NA
WP_057036763.1\|236194_236374_-	hypothetical protein	NA	NA	NA	NA
WP_057036764.1\|236370_236856_-	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	4.2e-18	34.0
WP_057036766.1\|237050_237389_-	hypothetical protein	NA	NA	NA	NA
WP_002824157.1\|237522_237708_-	hypothetical protein	NA	NA	NA	NA
WP_096777898.1\|237704_237896_-	RNA polymerase subunit sigma-70	NA	NA	NA	NA
WP_096777899.1\|238837_240955_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
241121:241138	attR	NA	NA	NA	NA

DBSCAN-SWA_2

550373 : 654064

108

Campylobacter_phage(20.0%)

tRNA,plate,head,protease,integrase,tail,terminase,transposase

attL 604960:604978|attR 643646:643664

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002868674.1\|550373_550892_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_002853001.1\|550990_551407_+	hypothetical protein	NA	NA	NA	NA
WP_002868673.1\|551415_553032_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	R4TQL5	Phaeocystis_globosa_virus	1.4e-70	43.9
WP_002868672.1\|553035_554286_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_002868671.1\|554282_555854_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_002868670.1\|555850_556906_-	3-dehydroquinate synthase	A0A0P0C619	Ostreococcus_mediterraneus_virus	1.3e-27	34.5
WP_002856550.1\|556951_558352_-	potassium transporter TrkA	NA	NA	NA	NA
WP_002924299.1\|558381_559503_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	6.4e-70	38.8
WP_002853764.1\|559504_560272_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_024088204.1\|560403_560853_-	hypothetical protein	NA	NA	NA	NA
WP_002875006.1\|560868_564114_-	cytochrome c biogenesis protein	NA	NA	NA	NA
WP_002852965.1\|564131_564827_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.4e-11	24.9
WP_002853599.1\|564813_565584_-	ABC transporter ATP-binding protein	M1HRF1	Paramecium_bursaria_Chlorella_virus	2.3e-10	26.1
WP_002854133.1\|565580_566633_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_002852952.1\|566632_567529_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_002853905.1\|567547_568657_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010790606.1\|568678_569794_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002853959.1\|569824_570259_-	c-type cytochrome	NA	NA	NA	NA
WP_002853004.1\|570267_570459_-	mini-MOMP protein	NA	NA	NA	NA
WP_002852919.1\|570510_571017_-	YqhA family protein	NA	NA	NA	NA
WP_002875384.1\|571025_572057_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_002875385.1\|572056_573358_-	fla regulon two-component system response regulator	NA	NA	NA	NA
WP_002871768.1\|573414_573864_-	hypothetical protein	NA	NA	NA	NA
WP_002875387.1\|573839_574355_-	flagellar assembly lipoprotein FlgP	NA	NA	NA	NA
WP_002871770.1\|574423_577012_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	1.5e-98	32.0
WP_002853564.1\|577052_577628_-	ComF family protein	NA	NA	NA	NA
WP_002852941.1\|577624_578269_-	hypothetical protein	NA	NA	NA	NA
WP_002868661.1\|578345_580142_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.1e-23	24.5
WP_002871771.1\|580267_581542_+	multidrug efflux RND transporter outer membrane subunit CmeD	NA	NA	NA	NA
WP_002858463.1\|581538_582279_+	multidrug efflux RND transporter periplasmic adaptor subunit CmeE	NA	NA	NA	NA
WP_002875388.1\|582281_585299_+	multidrug efflux RND transporter permease subunit CmeF	S5VTK5	Leptospira_phage	2.3e-66	24.6
WP_002852998.1\|585322_586129_-	adenylosuccinate lyase	NA	NA	NA	NA
WP_002853863.1\|586129_586849_-	arginyltransferase	NA	NA	NA	NA
WP_002853000.1\|586848_587100_-	hypothetical protein	NA	NA	NA	NA
WP_002856595.1\|587103_588549_-	acetyl-CoA carboxylase subunit A	NA	NA	NA	NA
WP_002853553.1\|588688_589852_+	putative lipid II flippase FtsW	NA	NA	NA	NA
WP_002871773.1\|589848_590877_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_002852987.1\|592018_592870_-	ATP-binding protein	NA	NA	NA	NA
WP_002852985.1\|592932_593823_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002852949.1\|593819_594425_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_002852974.1\|594414_595560_-	2-iminoacetate synthase ThiH	NA	NA	NA	NA
WP_002869461.1\|595562_596339_-	thiazole synthase	NA	NA	NA	NA
WP_079264859.1\|596341_597145_-	thiamine biosynthesis protein ThiF	A0A1V0SIK8	Klosneuvirus	6.9e-10	32.6
WP_002853007.1\|597141_597333_-	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_002871776.1\|597342_598440_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_002779102.1\|598443_599043_-	lysine transporter LysE	NA	NA	NA	NA
WP_002864286.1\|599035_599737_-	NAD-dependent protein deacylase	A0A023MHA7	Escherichia_phage	1.6e-31	42.8
WP_002875392.1\|602365_603415_+	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	5.3e-103	51.8
WP_002875393.1\|603407_605438_+	hypothetical protein	NA	NA	NA	NA
604960:604978	attL	NA	NA	NA	NA
WP_002870152.1\|605503_606472_-\|tail	phage tail protein	A0A219Y9Y2	Aeromonas_phage	4.3e-14	26.8
WP_002789964.1\|606465_606657_-\|tail	tail protein	NA	NA	NA	NA
WP_002875691.1\|606649_607024_-\|tail	tail protein	NA	NA	NA	NA
WP_002789978.1\|609018_609249_+	hypothetical protein	NA	NA	NA	NA
WP_057036738.1\|609356_609593_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002865794.1\|609603_610119_-\|tail	tail protein	A0A0F7LDZ1	Escherichia_phage	5.8e-10	25.7
WP_019108978.1\|610265_611456_-\|tail	phage tail sheath family protein	A7YGA3	Campylobacter_phage	7.9e-196	99.0
WP_057036737.1\|611466_612480_-	hypothetical protein	A7YGH6	Campylobacter_phage	1.0e-191	98.8
WP_002938257.1\|612603_612975_-	DUF1353 domain-containing protein	A7YGH7	Campylobacter_phage	1.5e-68	100.0
WP_002924980.1\|612971_613478_-	DUF4376 domain-containing protein	A7YGA6	Campylobacter_phage	5.7e-87	99.4
WP_057036736.1\|613502_614534_-\|tail	phage tail protein	A7YGU3	Campylobacter_phage	2.2e-186	98.5
WP_002935514.1\|614533_615154_-\|tail	phage tail protein I	A7YGM6	Campylobacter_phage	9.6e-60	98.3
WP_057036735.1\|615251_616418_-\|plate	baseplate assembly protein	A0A1X9SH02	Bradyrhizobium_phage	3.3e-13	25.8
WP_002795239.1\|616414_616705_-\|plate	baseplate assembly protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_039332519.1\|616900_617533_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	7.1e-10	35.5
WP_002865847.1\|617529_617994_-	DUF1804 family protein	NA	NA	NA	NA
WP_002790001.1\|618124_619165_+	hypothetical protein	NA	NA	NA	NA
WP_002790002.1\|619164_620052_+\|head	head protein	A0A2K9VH18	Faecalibacterium_phage	3.5e-63	43.7
WP_002875630.1\|620051_620279_+	hypothetical protein	NA	NA	NA	NA
WP_002790896.1\|620275_620629_+	hypothetical protein	NA	NA	NA	NA
WP_002790266.1\|620625_620991_+	hypothetical protein	NA	NA	NA	NA
WP_002827121.1\|620980_621370_+	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	1.9e-21	47.1
WP_002827119.1\|621380_621722_+	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|621718_621967_+	hypothetical protein	NA	NA	NA	NA
WP_002790261.1\|622078_622393_+	hypothetical protein	NA	NA	NA	NA
WP_002865465.1\|622482_624009_+\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	6.4e-49	31.1
WP_002913010.1\|624005_625388_+	DUF935 family protein	A0A0M3LRU4	Mannheimia_phage	6.3e-11	23.2
WP_002870187.1\|625504_626638_+	hypothetical protein	A0A1C6ZDL9	Pseudomonas_phage	5.1e-27	34.2
WP_002918728.1\|626776_627256_-	hypothetical protein	A7YGZ0	Campylobacter_phage	2.8e-06	30.2
WP_002918730.1\|627242_627434_-	hypothetical protein	NA	NA	NA	NA
WP_002909839.1\|627485_627914_-	hypothetical protein	NA	NA	NA	NA
WP_002864977.1\|627910_628090_-	hypothetical protein	NA	NA	NA	NA
WP_002791413.1\|628204_628591_-	hypothetical protein	D5GVQ0	Campylobacter_virus	2.7e-36	56.4
WP_002791414.1\|628587_628860_-	hypothetical protein	NA	NA	NA	NA
WP_002791416.1\|628923_629103_-	hypothetical protein	NA	NA	NA	NA
WP_057036764.1\|629099_629585_-	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	4.2e-18	34.0
WP_057036766.1\|629779_630118_-	hypothetical protein	NA	NA	NA	NA
WP_002824157.1\|630251_630437_-	hypothetical protein	NA	NA	NA	NA
WP_096777900.1\|630609_630801_-	RNA polymerase subunit sigma-70	NA	NA	NA	NA
WP_002790751.1\|630797_631655_-	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	9.6e-26	31.2
WP_096777901.1\|631743_633861_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_002790505.1\|633861_634062_-	hypothetical protein	NA	NA	NA	NA
WP_002874962.1\|634341_634974_+	LexA family transcriptional regulator	S5FUZ3	Shigella_phage	2.2e-11	30.0
WP_002858188.1\|636874_639085_-	endonuclease MutS2	NA	NA	NA	NA
WP_002858449.1\|639074_639425_-	hypothetical protein	NA	NA	NA	NA
WP_072223327.1\|639417_640716_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_002871781.1\|640779_642753_-	LTA synthase family protein	NA	NA	NA	NA
WP_002871782.1\|642764_643541_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_002853034.1\|643533_643707_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
643646:643664	attR	NA	NA	NA	NA
WP_002871783.1\|643703_645161_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	9.4e-98	40.7
WP_057036690.1\|645170_646532_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_002869114.1\|646528_646639_-	membrane protein	NA	NA	NA	NA
WP_002874958.1\|646632_649386_-\|tRNA	isoleucine--tRNA ligase	A0A2P1ELB8	Moumouvirus	1.1e-67	24.9
WP_002853490.1\|649484_650573_+	CinA family protein	B5TK85	Pseudomonas_phage	2.7e-09	34.6
WP_002874957.1\|650584_651010_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_052791331.1\|651074_651695_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_002874954.1\|651694_652300_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_002853053.1\|652424_652961_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_002852927.1\|652957_654064_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

DBSCAN-SWA_3

1012232 : 1029000

Synechococcus_phage(46.15%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002875658.1\|1012232_1012955_-	hypothetical protein	E3SJ89	Synechococcus_phage	6.8e-17	27.3
WP_052794438.1\|1012951_1014475_-	capsular biosynthesis protein	B2ZYD9	Ralstonia_phage	3.0e-30	26.3
WP_002875574.1\|1014471_1014870_-	capsule biosynthesis phosphatase	A0A2K9L0P7	Tupanvirus	3.8e-09	41.0
WP_057036771.1\|1014909_1016826_-	hypothetical protein	E3SJ94	Synechococcus_phage	1.2e-07	30.5
WP_002826453.1\|1016827_1017568_-	LPS biosynthesis protein	A0A1D8KNV9	Synechococcus_phage	5.3e-49	46.9
WP_002875572.1\|1017564_1017894_-	hypothetical protein	NA	NA	NA	NA
WP_002826455.1\|1017896_1018232_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_002826457.1\|1018224_1018950_-	NTP transferase domain-containing protein	A0A1D8KNV9	Synechococcus_phage	2.1e-29	33.2
WP_002826458.1\|1018943_1019582_-	HAD family phosphatase	M1I080	Acanthocystis_turfacea_Chlorella_virus	2.2e-35	43.3
WP_153676902.1\|1020454_1022236_-	DUF2972 domain-containing protein	NA	NA	NA	NA
WP_002826582.1\|1022351_1023026_-	NTP transferase domain-containing protein	A0A2K9L821	Tupanvirus	5.4e-08	26.1
WP_002875645.1\|1023013_1023619_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	5.4e-15	33.7
WP_002875644.1\|1023606_1024626_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	7.8e-59	41.0
WP_002875642.1\|1024622_1025654_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	7.2e-145	72.4
WP_052784009.1\|1025662_1026724_-	GDP-L-fucose synthase	M1HKX0	Paramecium_bursaria_Chlorella_virus	8.3e-88	50.4
WP_079459990.1\|1027845_1029000_-	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	9.1e-80	43.5

DBSCAN-SWA_4

1672480 : 1755476

Campylobacter_phage(25.81%)

tRNA,plate,head,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057036695.1\|1672480_1673986_+\|tRNA	lysine--tRNA ligase	A0A1V0SIS0	Klosneuvirus	1.1e-88	39.3
WP_002859480.1\|1673982_1675227_+	serine hydroxymethyltransferase	A0A219YB23	Aeromonas_phage	7.0e-102	51.9
WP_002859481.1\|1675223_1675769_+	DUF1882 domain-containing protein	NA	NA	NA	NA
WP_002923848.1\|1675782_1676619_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_002858718.1\|1676615_1677404_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_052791366.1\|1677478_1678378_-	hypothetical protein	NA	NA	NA	NA
WP_002930171.1\|1678467_1679283_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_002854660.1\|1679351_1680134_+	fumarate reductase cytochrome b subunit	NA	NA	NA	NA
WP_052794415.1\|1680117_1682109_+	fumarate reductase flavoprotein subunit	M1HTN0	Paramecium_bursaria_Chlorella_virus	3.2e-16	26.0
WP_002854302.1\|1682101_1682827_+	fumarate reductase iron-sulfur subunit	NA	NA	NA	NA
WP_002923849.1\|1682854_1685041_+	ATP-binding protein	NA	NA	NA	NA
WP_057036696.1\|1685030_1686860_+	ATP-binding protein	NA	NA	NA	NA
WP_002860264.1\|1686859_1687564_+	sel1 repeat family protein	NA	NA	NA	NA
WP_002855611.1\|1687699_1688428_+	gluconate 2-dehydrogenase subunit 3 family protein	NA	NA	NA	NA
WP_002868707.1\|1688429_1690151_+	GMC family oxidoreductase	NA	NA	NA	NA
WP_153676900.1\|1690478_1690628_+	hypothetical protein	NA	NA	NA	NA
WP_153676901.1\|1690624_1690996_+	hypothetical protein	NA	NA	NA	NA
WP_002868709.1\|1691046_1691295_+	hypothetical protein	NA	NA	NA	NA
WP_002859493.1\|1691305_1692010_-	hypothetical protein	NA	NA	NA	NA
WP_002858673.1\|1692117_1692480_+	HIT family protein	NA	NA	NA	NA
WP_002855621.1\|1692553_1693126_+	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_002858716.1\|1693130_1694087_-	membrane protein	NA	NA	NA	NA
WP_002858725.1\|1694148_1694358_-	transcriptional regulator	NA	NA	NA	NA
WP_002855619.1\|1694526_1694754_+	superinfection immunity protein	M4MA40	Vibrio_phage	2.2e-06	44.3
WP_002818736.1\|1694762_1695395_+	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_002824822.1\|1695407_1695824_+	hypothetical protein	NA	NA	NA	NA
WP_052794417.1\|1695953_1697531_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	9.9e-53	27.3
WP_002859498.1\|1697520_1697856_+	hypothetical protein	NA	NA	NA	NA
WP_002860258.1\|1697930_1698314_+	hypothetical protein	NA	NA	NA	NA
WP_002875084.1\|1698357_1698942_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	4.2e-17	36.1
WP_002875083.1\|1699069_1700296_+	hypothetical protein	NA	NA	NA	NA
WP_002859502.1\|1700288_1701026_+	hypothetical protein	NA	NA	NA	NA
WP_052794400.1\|1707260_1708469_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_002859004.1\|1708468_1709530_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_052794399.1\|1709609_1711088_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_002859879.1\|1711159_1711903_+	3-oxoacyl-ACP reductase FabG	A0A0N9R355	Chrysochromulina_ericina_virus	1.5e-11	25.8
WP_072223319.1\|1711909_1712320_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_002854950.1\|1714488_1715454_+	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA
WP_002855106.1\|1715457_1716315_+	heterodisulfide reductase subunit B	NA	NA	NA	NA
WP_072225850.1\|1716338_1717007_-	thiaminase II	NA	NA	NA	NA
WP_002854831.1\|1717116_1717350_+	acyl carrier protein	NA	NA	NA	NA
WP_052794397.1\|1717375_1718590_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_002858530.1\|1718591_1719530_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_002871176.1\|1721804_1722401_+	NUDIX hydrolase	NA	NA	NA	NA
WP_002875030.1\|1722432_1723530_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.9e-11	69.1
WP_002855201.1\|1723539_1723755_-	YdcH family protein	NA	NA	NA	NA
WP_002854974.1\|1723939_1724134_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_002858571.1\|1724273_1724921_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_002875031.1\|1724917_1725679_+	3'-5' exonuclease	A0A1X9I5C8	Streptococcus_phage	3.7e-13	33.5
WP_002875392.1\|1726100_1727150_+	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	5.3e-103	51.8
WP_002875393.1\|1727142_1729173_+	hypothetical protein	NA	NA	NA	NA
WP_002870152.1\|1729238_1730207_-\|tail	phage tail protein	A0A219Y9Y2	Aeromonas_phage	4.3e-14	26.8
WP_002789964.1\|1730200_1730392_-\|tail	tail protein	NA	NA	NA	NA
WP_002875691.1\|1730384_1730759_-\|tail	tail protein	NA	NA	NA	NA
WP_002875690.1\|1730760_1732725_-\|tail	phage tail tape measure protein	A7YG97	Campylobacter_phage	7.4e-05	19.5
WP_002789978.1\|1732754_1732985_+	hypothetical protein	NA	NA	NA	NA
WP_057036738.1\|1733092_1733329_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002865794.1\|1733339_1733855_-\|tail	tail protein	A0A0F7LDZ1	Escherichia_phage	5.8e-10	25.7
WP_019108978.1\|1734001_1735192_-\|tail	phage tail sheath family protein	A7YGA3	Campylobacter_phage	7.9e-196	99.0
WP_057036737.1\|1735202_1736216_-	hypothetical protein	A7YGH6	Campylobacter_phage	1.0e-191	98.8
WP_002938257.1\|1736339_1736711_-	DUF1353 domain-containing protein	A7YGH7	Campylobacter_phage	1.5e-68	100.0
WP_002924980.1\|1736707_1737214_-	DUF4376 domain-containing protein	A7YGA6	Campylobacter_phage	5.7e-87	99.4
WP_057036736.1\|1737238_1738270_-\|tail	phage tail protein	A7YGU3	Campylobacter_phage	2.2e-186	98.5
WP_002935514.1\|1738269_1738890_-\|tail	phage tail protein I	A7YGM6	Campylobacter_phage	9.6e-60	98.3
WP_057036735.1\|1738987_1740154_-\|plate	baseplate assembly protein	A0A1X9SH02	Bradyrhizobium_phage	3.3e-13	25.8
WP_002795239.1\|1740150_1740441_-\|plate	baseplate assembly protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_002795238.1\|1740437_1740629_-	hypothetical protein	NA	NA	NA	NA
WP_039332519.1\|1740637_1741270_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	7.1e-10	35.5
WP_002865847.1\|1741266_1741731_-	DUF1804 family protein	NA	NA	NA	NA
WP_002790001.1\|1741861_1742902_+	hypothetical protein	NA	NA	NA	NA
WP_002790002.1\|1742901_1743789_+\|head	head protein	A0A2K9VH18	Faecalibacterium_phage	3.5e-63	43.7
WP_014517220.1\|1743788_1744100_+	hypothetical protein	NA	NA	NA	NA
WP_002790896.1\|1744096_1744450_+	hypothetical protein	NA	NA	NA	NA
WP_002790266.1\|1744446_1744812_+	hypothetical protein	NA	NA	NA	NA
WP_002827121.1\|1744801_1745191_+	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	1.9e-21	47.1
WP_002827119.1\|1745201_1745543_+	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|1745539_1745788_+	hypothetical protein	NA	NA	NA	NA
WP_002790261.1\|1745899_1746214_+	hypothetical protein	NA	NA	NA	NA
WP_002865465.1\|1746303_1747830_+\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	6.4e-49	31.1
WP_002913010.1\|1747826_1749209_+	DUF935 family protein	A0A0M3LRU4	Mannheimia_phage	6.3e-11	23.2
WP_002870187.1\|1749325_1750459_+	hypothetical protein	A0A1C6ZDL9	Pseudomonas_phage	5.1e-27	34.2
WP_002918728.1\|1750597_1751077_-	hypothetical protein	A7YGZ0	Campylobacter_phage	2.8e-06	30.2
WP_002918730.1\|1751063_1751255_-	hypothetical protein	NA	NA	NA	NA
WP_002790255.1\|1751306_1751735_-	hypothetical protein	NA	NA	NA	NA
WP_002864977.1\|1751731_1751911_-	hypothetical protein	NA	NA	NA	NA
WP_002791413.1\|1752025_1752412_-	hypothetical protein	D5GVQ0	Campylobacter_virus	2.7e-36	56.4
WP_002791414.1\|1752408_1752681_-	hypothetical protein	NA	NA	NA	NA
WP_057036763.1\|1752744_1752924_-	hypothetical protein	NA	NA	NA	NA
WP_057036764.1\|1752920_1753406_-	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	4.2e-18	34.0
WP_057036766.1\|1753600_1753939_-	hypothetical protein	NA	NA	NA	NA
WP_002824157.1\|1754072_1754258_-	hypothetical protein	NA	NA	NA	NA
WP_096777900.1\|1754430_1754622_-	RNA polymerase subunit sigma-70	NA	NA	NA	NA
WP_002790751.1\|1754618_1755476_-	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	9.6e-26	31.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045790

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP045789

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection