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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP045845 Kluyvera intermedia strain N2-1 chromosome, complete genome 6 crisprs PD-DExK,cas3,DEDDh,DinG,csa3,cas14j 0 1 10 0
NZ_CP045846 Kluyvera intermedia strain N2-1 plasmid pN2-1, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP045845
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045845_1 875939-876072 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045845_2 1273098-1273237 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045845_3 1393078-1393163 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045845_4 3589549-3589653 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045845_5 3958801-3958943 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045845_6 4150528-4150635 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 CP052389 Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1 144507-144543 7 0.811
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 NZ_CP047177 Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence 26271-26307 7 0.811
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 CP052389 Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1 228087-228123 9 0.757
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 2050-2086 10 0.73
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 NZ_CP024423 Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence 19761-19797 10 0.73
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 NZ_CP044080 Paracoccus yeei strain FDAARGOS_643 plasmid unnamed3, complete sequence 20910-20946 10 0.73
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 NZ_CP031082 Paracoccus yeei strain CCUG 32053 plasmid pYEE4, complete sequence 32538-32574 10 0.73
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 NZ_CP020441 Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence 37669-37705 11 0.703
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 NZ_CP050835 Klebsiella pneumoniae strain Bckp021 plasmid pBckp021-1, complete sequence 218175-218211 12 0.676
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 LR134252 Klebsiella aerogenes strain NCTC9997 genome assembly, plasmid: 2 39380-39416 12 0.676
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 NZ_CP040862 Klebsiella pneumoniae strain Xen39 plasmid unnamed3, complete sequence 259753-259789 12 0.676
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 NZ_CP007734 Klebsiella pneumoniae subsp. pneumoniae KPNIH27 plasmid pKPN-262, complete sequence 189178-189214 12 0.676
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 NZ_CP026186 Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-3967, complete sequence 107065-107101 12 0.676
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 NZ_CP031614 Klebsiella pneumoniae strain ZYST1 plasmid pZYST1C1, complete sequence 107283-107319 12 0.676
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 NZ_CP018361 Klebsiella oxytoca strain CAV1752 plasmid pCAV1752-278, complete sequence 88892-88928 12 0.676
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 NZ_AP014952 Klebsiella oxytoca strain JKo3 plasmid pKO_JKo3_1, complete sequence 102176-102212 12 0.676
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 NZ_CP014763 Klebsiella pneumoniae strain KPNIH39 plasmid pKPN-332, complete sequence 233993-234029 12 0.676
NZ_CP045845_5 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder 3958854-3958890 37 MN661402 Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence 127649-127685 12 0.676

1. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to CP052389 (Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1) position: , mismatch: 7, identity: 0.811

actcccggcggcgctgcgcttg-gccgggctacacaag	CRISPR spacer
atgcccggcggcgctgcgcttgcgcgggcctacgaaa-	Protospacer
*. ******************* ** ** ****. ** 

2. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to NZ_CP047177 (Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.811

actcccggc--ggcgctgcgcttggccgggctacacaag	CRISPR spacer
--ttccggcctggcgctgcgcttggccggggtgcacact	Protospacer
  *.*****  ******************* *.****  

3. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to CP052389 (Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1) position: , mismatch: 9, identity: 0.757

actcccggcggcgctgcgcttggccgggctacacaag-	CRISPR spacer
gcgcccggcggcgctgcgcttgcgcgggcc-tacgggt	Protospacer
.* *******************  *****. .**..* 

4. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 10, identity: 0.73

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
ttccccggcggcgctgcgcctggacgggctactggct	Protospacer
 ..****************.*** ********  .  

5. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 10, identity: 0.73

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
cgtgccggcggcgctgcgctttgccgggctgctggcc	Protospacer
  * ***************** ********.*  .  

6. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to NZ_CP044080 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.73

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
cgtgccggcggcgctgcgctttgccgggctgctggcc	Protospacer
  * ***************** ********.*  .  

7. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to NZ_CP031082 (Paracoccus yeei strain CCUG 32053 plasmid pYEE4, complete sequence) position: , mismatch: 10, identity: 0.73

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
cgtgccggcggcgctgcgctttgccgggctgctggcc	Protospacer
  * ***************** ********.*  .  

8. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to NZ_CP020441 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.703

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
cgtgccggcggcgctgcgctttaccgggctgctggcc	Protospacer
  * ***************** .*******.*  .  

9. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to NZ_CP050835 (Klebsiella pneumoniae strain Bckp021 plasmid pBckp021-1, complete sequence) position: , mismatch: 12, identity: 0.676

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
ctgcccggcggcgctgcgcttgcgcgggcctgggggg	Protospacer
 . *******************  *****.  . ..*

10. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to LR134252 (Klebsiella aerogenes strain NCTC9997 genome assembly, plasmid: 2) position: , mismatch: 12, identity: 0.676

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
ctgcccggcggcgctgcgcttgcgcgggcctgggggg	Protospacer
 . *******************  *****.  . ..*

11. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to NZ_CP040862 (Klebsiella pneumoniae strain Xen39 plasmid unnamed3, complete sequence) position: , mismatch: 12, identity: 0.676

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
ctgcccggcggcgctgcgcttgcgcgggcctgggggg	Protospacer
 . *******************  *****.  . ..*

12. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to NZ_CP007734 (Klebsiella pneumoniae subsp. pneumoniae KPNIH27 plasmid pKPN-262, complete sequence) position: , mismatch: 12, identity: 0.676

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
ctgcccggcggcgctgcgcttgcgcgggcctgggggg	Protospacer
 . *******************  *****.  . ..*

13. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to NZ_CP026186 (Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-3967, complete sequence) position: , mismatch: 12, identity: 0.676

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
ctgcccggcggcgctgcgcttgcgcgggcctgggggg	Protospacer
 . *******************  *****.  . ..*

14. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to NZ_CP031614 (Klebsiella pneumoniae strain ZYST1 plasmid pZYST1C1, complete sequence) position: , mismatch: 12, identity: 0.676

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
ctgcccggcggcgctgcgcttgcgcgggcctgggggg	Protospacer
 . *******************  *****.  . ..*

15. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to NZ_CP018361 (Klebsiella oxytoca strain CAV1752 plasmid pCAV1752-278, complete sequence) position: , mismatch: 12, identity: 0.676

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
ctgcccggcggcgctgcgcttgcgcgggcctgggggg	Protospacer
 . *******************  *****.  . ..*

16. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to NZ_AP014952 (Klebsiella oxytoca strain JKo3 plasmid pKO_JKo3_1, complete sequence) position: , mismatch: 12, identity: 0.676

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
ctgcccggcggcgctgcgcttgcgcgggcctgggggg	Protospacer
 . *******************  *****.  . ..*

17. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to NZ_CP014763 (Klebsiella pneumoniae strain KPNIH39 plasmid pKPN-332, complete sequence) position: , mismatch: 12, identity: 0.676

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
ctgcccggcggcgctgcgcttgcgcgggcctgggggg	Protospacer
 . *******************  *****.  . ..*

18. spacer 5.1|3958854|37|NZ_CP045845|CRISPRCasFinder matches to MN661402 (Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence) position: , mismatch: 12, identity: 0.676

actcccggcggcgctgcgcttggccgggctacacaag	CRISPR spacer
ctgcccggcggcgctgcgcttgcgcgggcctgggggg	Protospacer
 . *******************  *****.  . ..*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1103958 : 1114921 11 Enterobacteria_phage(75.0%) integrase,capsid attL 1104540:1104562|attR 1114933:1114955
DBSCAN-SWA_2 1445552 : 1453918 8 Morganella_phage(33.33%) NA NA
DBSCAN-SWA_3 1576481 : 1585042 9 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_4 1608188 : 1616245 7 Planktothrix_phage(33.33%) tRNA NA
DBSCAN-SWA_5 1783766 : 1794606 12 Enterobacteria_phage(40.0%) integrase,tail attL 1781982:1781996|attR 1791027:1791041
DBSCAN-SWA_6 2360460 : 2368454 9 Escherichia_phage(66.67%) NA NA
DBSCAN-SWA_7 2643426 : 2704530 73 Enterobacteria_phage(35.14%) tRNA,terminase,portal,holin,integrase,tail,protease attL 2667000:2667014|attR 2711195:2711209
DBSCAN-SWA_8 3007677 : 3105105 97 Salmonella_phage(58.49%) tRNA,portal,integrase,lysis,capsid,head,tail,protease,plate attL 3071440:3071464|attR 3105555:3105579
DBSCAN-SWA_9 3381175 : 3395641 17 Salmonella_phage(35.71%) integrase attL 3380818:3380865|attR 3394449:3394496
DBSCAN-SWA_10 3495838 : 3500989 8 uncultured_Caudovirales_phage(66.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP045846
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 71945 : 157689 82 Escherichia_phage(33.33%) integrase,protease,transposase attL 134803:134862|attR 148112:148932
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage