CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP045831	Salmonella enterica subsp. enterica serovar Hvittingfoss strain AUSMDU00005056 chromosome, complete genome	2 crisprs	PD-DExK,DEDDh,cas4,WYL,csa3,cas3,DinG	0	7	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045831_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045831_1

987014-987408

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

6 spacers

The CRISPR arrays of NZ_CP045831_1

>merge|NZ_CP045831|1|987014-987408|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGGCGCCGTAGGGGTTTGCAGAATTTTATAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTCCCAATCAGTGACGCGGTAAATATCCAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTAGGTAGTGACTCACCATTCAGATATTTTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGTGTGCGTGTGGCTGGAATTTTTTAATCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCACCAGCGGGGATAAACCGATTTTAGAATTACGCATTGAGCCGATGATGTAGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP045831|1|1|987014-987347|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGCGCCGTAGGGGTTTGCAGAATTTTATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCCCAATCAGTGACGCGGTAAATATCCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGTAGTGACTCACCATTCAGATATTTTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGTGTGCGTGTGGCTGGAATTTTTTAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCACCAGCGGGGATAAACCG

>NZ_CP045831|1|1|987014-987408|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGCGCCGTAGGGGTTTGCAGAATTTTATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCCCAATCAGTGACGCGGTAAATATCCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGTAGTGACTCACCATTCAGATATTTTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGTGTGCGTGTGGCTGGAATTTTTTAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCACCAGCGGGGATAAACCG	ATTTTAGAATTACGCATTGAGCCGATGATGTA
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP045831|1|1|987014-987408|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGCGCCGTAGGGGTTTGCAGAATTTTATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCCCAATCAGTGACGCGGTAAATATCCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGTAGTGACTCACCATTCAGATATTTTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGTGTGCGTGTGGCTGGAATTTTTTAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCACCAGCGGGGATAAACCG	ATTTTAGAATTACGCATTGAGCCGATGATGTA
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045831.1\|WP_000490481.1\|996990_998037_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP045831.1\|WP_000178270.1\|976574_977081_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP045831.1\|WP_000210451.1\|981863_982664_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP045831.1\|WP_020437818.1\|990988_992701_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP045831.1\|WP_000108313.1\|988392_988755_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP045831.1\|WP_000832395.1\|976089_976560_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP045831.1\|WP_000842512.1\|980665_981253_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP045831.1\|WP_153781906.1\|977886_980586_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP045831.1\|WP_001044459.1\|977100_977874_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP045831.1\|WP_079986738.1\|999205_1000645_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP045831.1\|WP_000036734.1\|984611_985910_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP045831.1\|WP_000372384.1\|998287_999196_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP045831.1\|WP_001173663.1\|1000631_1001237_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP045831.1\|WP_001079646.1\|975556_976093_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP045831.1\|WP_064042870.1\|987505_988303_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP045831.1\|WP_000210863.1\|982891_984529_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP045831.1\|WP_024143111.1\|993749_994703_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP045831.1\|WP_001199961.1\|986045_986717_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP045831.1\|WP_020437817.1\|992802_993537_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP045831.1\|WP_153781907.1\|989189_990989_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862

Protein	Function_ID	Function_description	E-value
NZ_CP045831.1\|WP_000490481.1\|996990_998037_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP045831.1\|WP_000178270.1\|976574_977081_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
NZ_CP045831.1\|WP_000210451.1\|981863_982664_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP045831.1\|WP_020437818.1\|990988_992701_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP045831.1\|WP_000108313.1\|988392_988755_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP045831.1\|WP_000832395.1\|976089_976560_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.31755e-98
NZ_CP045831.1\|WP_000842512.1\|980665_981253_-\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP045831.1\|WP_153781906.1\|977886_980586_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP045831.1\|WP_001044459.1\|977100_977874_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP045831.1\|WP_079986738.1\|999205_1000645_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP045831.1\|WP_000036734.1\|984611_985910_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP045831.1\|WP_000372384.1\|998287_999196_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP045831.1\|WP_001173663.1\|1000631_1001237_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP045831.1\|WP_001079646.1\|975556_976093_-\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	7.785e-121
NZ_CP045831.1\|WP_064042870.1\|987505_988303_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.55787e-103
NZ_CP045831.1\|WP_000210863.1\|982891_984529_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP045831.1\|WP_024143111.1\|993749_994703_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP045831.1\|WP_001199961.1\|986045_986717_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP045831.1\|WP_020437817.1\|992802_993537_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47425e-138
NZ_CP045831.1\|WP_153781907.1\|989189_990989_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0

>NZ_CP045831.1|WP_001199961.1|986045_986717_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP045831.1|WP_000036734.1|984611_985910_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP045831.1|WP_000210863.1|982891_984529_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP045831.1|WP_000210451.1|981863_982664_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP045831.1|WP_000842512.1|980665_981253_-|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP045831.1|WP_153781906.1|977886_980586_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDNDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKLALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLPRIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPTTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP045831.1|WP_001044459.1|977100_977874_-|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP045831.1|WP_000178270.1|976574_977081_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP045831.1|WP_000832395.1|976089_976560_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTSVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP045831.1|WP_001079646.1|975556_976093_-|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>NZ_CP045831.1|WP_064042870.1|987505_988303_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNASAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP045831.1|WP_000108313.1|988392_988755_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP045831.1|WP_153781907.1|989189_990989_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMSGITLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGIWYQNDPALVKELVELLWLKGDEPVMVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP045831.1|WP_020437818.1|990988_992701_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP045831.1|WP_020437817.1|992802_993537_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNDLPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQESRYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP045831.1|WP_024143111.1|993749_994703_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMDVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP045831.1|WP_000490481.1|996990_998037_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP045831.1|WP_000372384.1|998287_999196_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP045831.1|WP_079986738.1|999205_1000645_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYCEETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPSVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP045831.1|WP_001173663.1|1000631_1001237_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS

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Crispr_ID: NZ_CP045831_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045831_2

996459-996976

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCNAGCGGGGATAAACCG	CRT

8 spacers

The CRISPR arrays of NZ_CP045831_2

>merge|NZ_CP045831|2|996459-996976|CRISPRCasFinder,CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCGCGTCAGGTTTCTGATGATGCGCGGCTGCTGGCGTGTTCCCCGCGCTAGCGGGGATAAACCGTTATTCTCCTGAATTGCCATTTTTCGATATGAGTGTTCCCCGCGCTAGCGGGGATAAACCGCAGATCGACCGACTTGAGGTTGAAGTGGTTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGATTCCCGGTAAATGGTTGTGGTGGCTGATCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTGCCAAACCGGCGCCGCTTTGTCTCTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATCTCTCTGGCTAATATCCTGCACCCGTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGACCAGGGGGGTTTTTCCACGTATCGCCGCTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCACAACGCCTGGATATCCGCCCATCGGCCGTGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP045831|2|2|996459-996976|CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGTCAGGTTTCTGATGATGCGCGGCTGCTGGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTATTCTCCTGAATTGCCATTTTTCGATATGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CAGATCGACCGACTTGAGGTTGAAGTGGTTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTCCCGGTAAATGGTTGTGGTGGCTGATCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTGCCAAACCGGCGCCGCTTTGTCTCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATCTCTCTGGCTAATATCCTGCACCCGTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAGGGGGGTTTTTCCACGTATCGCCGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP045831|2|2|996459-996976|CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGTCAGGTTTCTGATGATGCGCGGCTGCTGGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTATTCTCCTGAATTGCCATTTTTCGATATGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CAGATCGACCGACTTGAGGTTGAAGTGGTTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTCCCGGTAAATGGTTGTGGTGGCTGATCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTGCCAAACCGGCGCCGCTTTGTCTCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATCTCTCTGGCTAATATCCTGCACCCGTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAGGGGGGTTTTTCCACGTATCGCCGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCACAACGCCTGGATATCCGCCCATCGGCC
GTGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045831.1\|WP_001118109.1\|1001254_1001611_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP045831.1\|WP_000490481.1\|996990_998037_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP045831.1\|WP_000210451.1\|981863_982664_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP045831.1\|WP_020437818.1\|990988_992701_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP045831.1\|WP_000108313.1\|988392_988755_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP045831.1\|WP_000372384.1\|998287_999196_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP045831.1\|WP_020437817.1\|992802_993537_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP045831.1\|WP_000517480.1\|1001801_1002113_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP045831.1\|WP_000036734.1\|984611_985910_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP045831.1\|WP_153781908.1\|1003317_1004367_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP045831.1\|WP_020839118.1\|1002131_1002842_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP045831.1\|WP_001173663.1\|1000631_1001237_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP045831.1\|WP_001221537.1\|1004347_1005109_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP045831.1\|WP_079986738.1\|999205_1000645_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP045831.1\|WP_064042870.1\|987505_988303_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP045831.1\|WP_000210863.1\|982891_984529_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP045831.1\|WP_024143111.1\|993749_994703_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP045831.1\|WP_001199961.1\|986045_986717_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP045831.1\|WP_001219244.1\|1002841_1003321_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP045831.1\|WP_153781907.1\|989189_990989_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862

Protein	Function_ID	Function_description	E-value
NZ_CP045831.1\|WP_001118109.1\|1001254_1001611_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP045831.1\|WP_000490481.1\|996990_998037_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP045831.1\|WP_000210451.1\|981863_982664_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP045831.1\|WP_020437818.1\|990988_992701_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP045831.1\|WP_000108313.1\|988392_988755_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP045831.1\|WP_000372384.1\|998287_999196_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP045831.1\|WP_020437817.1\|992802_993537_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47425e-138
NZ_CP045831.1\|WP_000517480.1\|1001801_1002113_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP045831.1\|WP_000036734.1\|984611_985910_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP045831.1\|WP_153781908.1\|1003317_1004367_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP045831.1\|WP_020839118.1\|1002131_1002842_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.27466e-119
NZ_CP045831.1\|WP_001173663.1\|1000631_1001237_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP045831.1\|WP_001221537.1\|1004347_1005109_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
NZ_CP045831.1\|WP_079986738.1\|999205_1000645_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP045831.1\|WP_064042870.1\|987505_988303_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.55787e-103
NZ_CP045831.1\|WP_000210863.1\|982891_984529_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP045831.1\|WP_024143111.1\|993749_994703_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP045831.1\|WP_001199961.1\|986045_986717_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP045831.1\|WP_001219244.1\|1002841_1003321_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP045831.1\|WP_153781907.1\|989189_990989_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0

>NZ_CP045831.1|WP_024143111.1|993749_994703_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMDVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP045831.1|WP_020437817.1|992802_993537_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNDLPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQESRYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP045831.1|WP_020437818.1|990988_992701_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP045831.1|WP_153781907.1|989189_990989_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMSGITLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGIWYQNDPALVKELVELLWLKGDEPVMVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP045831.1|WP_000108313.1|988392_988755_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP045831.1|WP_064042870.1|987505_988303_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNASAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP045831.1|WP_001199961.1|986045_986717_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP045831.1|WP_000036734.1|984611_985910_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP045831.1|WP_000210863.1|982891_984529_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP045831.1|WP_000210451.1|981863_982664_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP045831.1|WP_000490481.1|996990_998037_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP045831.1|WP_000372384.1|998287_999196_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP045831.1|WP_079986738.1|999205_1000645_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYCEETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPSVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP045831.1|WP_001173663.1|1000631_1001237_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP045831.1|WP_001118109.1|1001254_1001611_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP045831.1|WP_000517480.1|1001801_1002113_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP045831.1|WP_020839118.1|1002131_1002842_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP045831.1|WP_001219244.1|1002841_1003321_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP045831.1|WP_153781908.1|1003317_1004367_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWQHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP045831.1|WP_001221537.1|1004347_1005109_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045831_2	2.8\|996916\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	996916-996947	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	35345-35376	0	1.0
NZ_CP045831_1	1.6\|987348\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	987348-987379	32	CP053405	Salmonella enterica strain 2010K-2057 plasmid unnamed2, complete sequence	21764-21795	1	0.969
NZ_CP045831_2	2.8\|996916\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	996916-996947	32	NZ_CP029990	Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence	95164-95195	1	0.969
NZ_CP045831_2	2.8\|996916\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	996916-996947	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	9403-9434	1	0.969
NZ_CP045831_2	2.8\|996916\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	996916-996947	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	39737-39768	1	0.969
NZ_CP045831_2	2.8\|996916\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	996916-996947	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	113376-113407	1	0.969
NZ_CP045831_1	1.6\|987348\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	987348-987379	32	NZ_CP012163	Enterobacter roggenkampii strain 35734 plasmid p35734-109.753kb, complete sequence	32903-32934	2	0.938
NZ_CP045831_1	1.6\|987348\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	987348-987379	32	NZ_CP009851	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pENT-c88, complete sequence	36222-36253	2	0.938
NZ_CP045831_1	1.6\|987348\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	987348-987379	32	NZ_CP029434	Klebsiella quasipneumoniae strain CAV2013 plasmid pCAV2013-61, complete sequence	11707-11738	2	0.938
NZ_CP045831_1	1.6\|987348\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	987348-987379	32	NZ_CP029428	Klebsiella quasipneumoniae strain CAV2018 plasmid pCAV2018-51, complete sequence	48089-48120	2	0.938
NZ_CP045831_1	1.6\|987348\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	987348-987379	32	NZ_CP029440	Klebsiella quasipneumoniae strain CAV1947 plasmid pCAV1947-61, complete sequence	49931-49962	2	0.938
NZ_CP045831_2	2.8\|996916\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	996916-996947	32	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	270963-270994	7	0.781
NZ_CP045831_2	2.4\|996672\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	996672-996703	32	MH986725	Pseudoalteromonas phage DW, complete genome	13387-13418	8	0.75
NZ_CP045831_2	2.6\|996794\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	996794-996825	32	NZ_CP035036	Pantoea ananatis strain NN08200 plasmid unnamed2, complete sequence	307302-307333	8	0.75
NZ_CP045831_1	1.2\|987104\|32\|NZ_CP045831\|PILER-CR,CRISPRCasFinder,CRT	987104-987135	32	MT586120	Synechococcus phage S-CAM7 isolate 0809CC03, complete genome	22559-22590	9	0.719
NZ_CP045831_1	1.2\|987104\|32\|NZ_CP045831\|PILER-CR,CRISPRCasFinder,CRT	987104-987135	32	NC_031927	Synechococcus phage S-CAM7 isolate 0910CC49, complete genome	22808-22839	9	0.719
NZ_CP045831_1	1.2\|987104\|32\|NZ_CP045831\|PILER-CR,CRISPRCasFinder,CRT	987104-987135	32	KU686213	Synechococcus phage S-CAM7 isolate 0910SB42, complete genome	23726-23757	9	0.719
NZ_CP045831_1	1.2\|987104\|32\|NZ_CP045831\|PILER-CR,CRISPRCasFinder,CRT	987104-987135	32	MK774614	Aeromonas phage CF8, complete genome	203348-203379	10	0.688
NZ_CP045831_1	1.5\|987287\|32\|NZ_CP045831\|PILER-CR,CRISPRCasFinder,CRT	987287-987318	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
NZ_CP045831_2	2.3\|996610\|33\|NZ_CP045831\|CRISPRCasFinder,CRT	996610-996642	33	MK813940	Aeromonas phage 4_L372X, complete genome	42218-42250	10	0.697
NZ_CP045831_2	2.6\|996794\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	996794-996825	32	MH389777	Dickeya phage vB_DsoM_JA11, complete genome	84345-84376	10	0.688
NZ_CP045831_2	2.6\|996794\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	996794-996825	32	MH460462	Dickeya phage vB_DsoM_JA33, complete genome	84335-84366	10	0.688
NZ_CP045831_2	2.6\|996794\|32\|NZ_CP045831\|CRISPRCasFinder,CRT	996794-996825	32	MH460460	Dickeya phage vB_DsoM_JA13, complete genome	84540-84571	10	0.688

1. spacer 2.8|996916|32|NZ_CP045831|CRISPRCasFinder,CRT matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatatccgcccatcggcc	Protospacer
********************************

2. spacer 1.6|987348|32|NZ_CP045831|CRISPRCasFinder,CRT matches to CP053405 (Salmonella enterica strain 2010K-2057 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

attttagaattacgcattgagccgatgatgta	CRISPR spacer
attttagagttacgcattgagccgatgatgta	Protospacer
********.***********************

3. spacer 2.8|996916|32|NZ_CP045831|CRISPRCasFinder,CRT matches to NZ_CP029990 (Salmonella enterica subsp. diarizonae serovar 48:i:z strain SA20121591 plasmid pSA20121591.1, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

4. spacer 2.8|996916|32|NZ_CP045831|CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

5. spacer 2.8|996916|32|NZ_CP045831|CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

6. spacer 2.8|996916|32|NZ_CP045831|CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgcacaacgcctggatattcgcccatcggcc	Protospacer
*******************.************

7. spacer 1.6|987348|32|NZ_CP045831|CRISPRCasFinder,CRT matches to NZ_CP012163 (Enterobacter roggenkampii strain 35734 plasmid p35734-109.753kb, complete sequence) position: , mismatch: 2, identity: 0.938

attttagaattacgcattgagccgatgatgta	CRISPR spacer
attttagagttacgcatcgagccgatgatgta	Protospacer
********.********.**************

8. spacer 1.6|987348|32|NZ_CP045831|CRISPRCasFinder,CRT matches to NZ_CP009851 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pENT-c88, complete sequence) position: , mismatch: 2, identity: 0.938

attttagaattacgcattgagccgatgatgta	CRISPR spacer
attttagagttacgcatcgagccgatgatgta	Protospacer
********.********.**************

9. spacer 1.6|987348|32|NZ_CP045831|CRISPRCasFinder,CRT matches to NZ_CP029434 (Klebsiella quasipneumoniae strain CAV2013 plasmid pCAV2013-61, complete sequence) position: , mismatch: 2, identity: 0.938

attttagaattacgcattgagccgatgatgta	CRISPR spacer
attttagagttacgcattgagccaatgatgta	Protospacer
********.**************.********

10. spacer 1.6|987348|32|NZ_CP045831|CRISPRCasFinder,CRT matches to NZ_CP029428 (Klebsiella quasipneumoniae strain CAV2018 plasmid pCAV2018-51, complete sequence) position: , mismatch: 2, identity: 0.938

attttagaattacgcattgagccgatgatgta	CRISPR spacer
attttagagttacgcattgagccaatgatgta	Protospacer
********.**************.********

11. spacer 1.6|987348|32|NZ_CP045831|CRISPRCasFinder,CRT matches to NZ_CP029440 (Klebsiella quasipneumoniae strain CAV1947 plasmid pCAV1947-61, complete sequence) position: , mismatch: 2, identity: 0.938

attttagaattacgcattgagccgatgatgta	CRISPR spacer
attttagagttacgcattgagccaatgatgta	Protospacer
********.**************.********

12. spacer 2.8|996916|32|NZ_CP045831|CRISPRCasFinder,CRT matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcacaacgcctggatatccgcccatcggcc	CRISPR spacer
tcgagaaacgcctggatctccgcccaccgccg	Protospacer
*** . *********** ********.** *

13. spacer 2.4|996672|32|NZ_CP045831|CRISPRCasFinder,CRT matches to MH986725 (Pseudoalteromonas phage DW, complete genome) position: , mismatch: 8, identity: 0.75

attcccggtaaatggttgtggtggctgatcca	CRISPR spacer
tatcgtgcgaaatggttgtggtcactgatcca	Protospacer
  ** .*  ************* .********

14. spacer 2.6|996794|32|NZ_CP045831|CRISPRCasFinder,CRT matches to NZ_CP035036 (Pantoea ananatis strain NN08200 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gcatctctctggctaatatcctgc--acccgttc	CRISPR spacer
tcatctcgctggctgatatcctgccggctggt--	Protospacer
 ****** ******.*********  .*. **

15. spacer 1.2|987104|32|NZ_CP045831|PILER-CR,CRISPRCasFinder,CRT matches to MT586120 (Synechococcus phage S-CAM7 isolate 0809CC03, complete genome) position: , mismatch: 9, identity: 0.719

gctcccaatcagtgacgcggtaaatatccaga	CRISPR spacer
tgcgcagatcagtgccgccgtaaatatccaaa	Protospacer
  . * .******* *** ***********.*

16. spacer 1.2|987104|32|NZ_CP045831|PILER-CR,CRISPRCasFinder,CRT matches to NC_031927 (Synechococcus phage S-CAM7 isolate 0910CC49, complete genome) position: , mismatch: 9, identity: 0.719

gctcccaatcagtgacgcggtaaatatccaga	CRISPR spacer
tgcgcagatcagtgccgccgtaaatatccaaa	Protospacer
  . * .******* *** ***********.*

17. spacer 1.2|987104|32|NZ_CP045831|PILER-CR,CRISPRCasFinder,CRT matches to KU686213 (Synechococcus phage S-CAM7 isolate 0910SB42, complete genome) position: , mismatch: 9, identity: 0.719

gctcccaatcagtgacgcggtaaatatccaga	CRISPR spacer
tgcgcagatcagtgccgccgtaaatatccaaa	Protospacer
  . * .******* *** ***********.*

18. spacer 1.2|987104|32|NZ_CP045831|PILER-CR,CRISPRCasFinder,CRT matches to MK774614 (Aeromonas phage CF8, complete genome) position: , mismatch: 10, identity: 0.688

gctcccaatcagtgacgcggtaaatatccaga	CRISPR spacer
aactgaaatctgtgacgcggtaaataacctgt	Protospacer
. ..  **** *************** ** *

19. spacer 1.5|987287|32|NZ_CP045831|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

20. spacer 2.3|996610|33|NZ_CP045831|CRISPRCasFinder,CRT matches to MK813940 (Aeromonas phage 4_L372X, complete genome) position: , mismatch: 10, identity: 0.697

cagatcgaccgacttgaggttgaagtggttggc	CRISPR spacer
actgctggacgacttaaggttgcagtggttggc	Protospacer
   ...*. ******.****** **********

21. spacer 2.6|996794|32|NZ_CP045831|CRISPRCasFinder,CRT matches to MH389777 (Dickeya phage vB_DsoM_JA11, complete genome) position: , mismatch: 10, identity: 0.688

gcatctctctggctaatatcctgcacccgttc	CRISPR spacer
ttcagaccgtggctaatattctgcgcccgttc	Protospacer
 .    *. **********.****.*******

22. spacer 2.6|996794|32|NZ_CP045831|CRISPRCasFinder,CRT matches to MH460462 (Dickeya phage vB_DsoM_JA33, complete genome) position: , mismatch: 10, identity: 0.688

gcatctctctggctaatatcctgcacccgttc	CRISPR spacer
ttcagaccgtggctaatattctgcgcccgttc	Protospacer
 .    *. **********.****.*******

23. spacer 2.6|996794|32|NZ_CP045831|CRISPRCasFinder,CRT matches to MH460460 (Dickeya phage vB_DsoM_JA13, complete genome) position: , mismatch: 10, identity: 0.688

gcatctctctggctaatatcctgcacccgttc	CRISPR spacer
ttcagaccgtggctaatattctgcgcccgttc	Protospacer
 .    *. **********.****.*******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

649352 : 682525

Cronobacter_phage(71.43%)

integrase,terminase,portal,holin,capsid,head,tail

attL 646084:646099|attR 678405:678420

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
646084:646099	attL	NA	NA	NA	NA
WP_001748617.1\|649352_650390_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	7.1e-124	65.6
WP_001748619.1\|650376_651270_-	hypothetical protein	NA	NA	NA	NA
WP_001748620.1\|651298_651877_-	phage repressor protein	A0A218M4J1	Erwinia_phage	1.5e-27	39.5
WP_001247709.1\|651996_652218_+	hypothetical protein	NA	NA	NA	NA
WP_000460877.1\|652248_652752_+	hypothetical protein	F1BUN6	Cronobacter_phage	3.5e-60	72.5
WP_000643375.1\|652761_652989_+	hypothetical protein	NA	NA	NA	NA
WP_024139063.1\|652978_653404_+	hypothetical protein	F1BUN5	Cronobacter_phage	2.9e-23	49.6
WP_001748623.1\|653403_653805_+	hypothetical protein	F1BUN2	Cronobacter_phage	1.9e-48	66.9
WP_071592686.1\|653951_654128_+	DUF2732 family protein	NA	NA	NA	NA
WP_000422609.1\|654118_654715_+	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	3.8e-74	72.3
WP_000153512.1\|654711_655041_+	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	3.0e-12	45.2
WP_001748626.1\|655030_655891_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	F1BUN1	Cronobacter_phage	4.9e-131	82.4
WP_001748627.1\|655887_657909_+	replication endonuclease	F1BUM9	Cronobacter_phage	2.1e-297	74.8
WP_001748628.1\|658028_658235_+	hypothetical protein	NA	NA	NA	NA
WP_001552031.1\|658208_658532_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	8.0e-50	92.3
WP_000038208.1\|658528_659590_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	2.3e-162	77.1
WP_001151948.1\|659586_661362_-	hypothetical protein	F1BUM5	Cronobacter_phage	6.3e-290	82.9
WP_000018798.1\|661522_662323_+\|capsid	phage capsid scaffolding protein	F1BUM4	Cronobacter_phage	3.2e-76	54.8
WP_000550496.1\|662384_663407_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.1e-158	81.2
WP_001748629.1\|663410_664115_+\|terminase	phage terminase subunit	F1BUM0	Cronobacter_phage	1.2e-87	67.8
WP_000398492.1\|664118_664313_+	hypothetical protein	Q8W634	Enterobacteria_phage	3.3e-11	58.6
WP_031607006.1\|664373_664862_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	1.1e-63	81.3
WP_000084220.1\|664858_665365_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	5.2e-64	69.8
WP_000560080.1\|665361_666069_+	hypothetical protein	F1BUL6	Cronobacter_phage	1.3e-100	76.1
WP_001748631.1\|666065_667193_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	7.3e-175	83.5
WP_000166743.1\|667189_667645_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
WP_001154425.1\|667654_667948_+\|holin	holin	C7BGD7	Burkholderia_phage	1.3e-14	46.2
WP_000175560.1\|667944_668286_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
WP_001748632.1\|668285_668618_+	hypothetical protein	F1BUL2	Cronobacter_phage	8.8e-36	70.9
WP_000411337.1\|668764_669022_+	hypothetical protein	A5X9I7	Aeromonas_virus	3.6e-21	63.4
WP_001748633.1\|669209_671180_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	2.1e-265	68.8
WP_001002797.1\|671176_671506_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_000136921.1\|671502_672687_+	hypothetical protein	F1BUK6	Cronobacter_phage	6.7e-179	78.4
WP_001534884.1\|672679_673267_+	hypothetical protein	F1BUK5	Cronobacter_phage	2.2e-90	82.6
WP_001748634.1\|673276_675382_+	hypothetical protein	S4TP62	Salmonella_phage	1.9e-200	69.4
WP_072208497.1\|675481_675940_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	2.4e-76	94.6
WP_001748636.1\|675929_676655_+	hypothetical protein	F1BUK1	Cronobacter_phage	1.5e-67	56.0
WP_000200790.1\|676626_677172_+	hypothetical protein	F1BUJ9	Cronobacter_phage	1.5e-64	73.1
WP_001748638.1\|677174_678875_+	hypothetical protein	F1BUJ7	Cronobacter_phage	4.4e-224	81.4
678405:678420	attR	NA	NA	NA	NA
WP_001620119.1\|680047_680554_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_001519776.1\|680677_682525_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7

DBSCAN-SWA_2

1705341 : 1714512

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569168.1\|1705341_1706289_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
WP_000824854.1\|1706272_1707004_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1706984_1707092_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|1707151_1707883_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272850.1\|1708105_1709791_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_000598637.1\|1709787_1710507_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1710553_1711021_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001197951.1\|1711077_1711608_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703145.1\|1711779_1712238_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	6.4e-53	72.5
WP_000195330.1\|1712478_1714512_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_3

1875263 : 1885864

Morganella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001219016.1\|1875263_1875737_-	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	1.6e-38	76.6
WP_058805781.1\|1876383_1876674_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.3e-08	50.9
WP_000598921.1\|1877045_1877843_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_001532308.1\|1878323_1878485_+	hypothetical protein	NA	NA	NA	NA
WP_000394197.1\|1878611_1879031_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_079959574.1\|1879033_1880302_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.2e-226	91.9
WP_000208509.1\|1880756_1880969_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131163.1\|1880979_1881168_+	hypothetical protein	NA	NA	NA	NA
WP_079959573.1\|1881427_1882624_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	6.1e-111	56.3
WP_153781928.1\|1883273_1883585_+	hypothetical protein	NA	NA	NA	NA
WP_021000456.1\|1883664_1884360_+	phosphohydrolase	S4W232	Pandoravirus	1.6e-07	28.0
WP_001157314.1\|1884433_1885864_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.8e-105	57.4

DBSCAN-SWA_4

2605508 : 2693759

104

Enterobacteria_phage(36.0%)

protease,integrase,terminase,tRNA,portal,holin,capsid,lysis,head,tail

attL 2626318:2626332|attR 2696392:2696406

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045900085.1\|2605508_2606036_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_000272238.1\|2606032_2606134_-	hypothetical protein	NA	NA	NA	NA
WP_000460698.1\|2606339_2606786_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_052934800.1\|2606765_2607560_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000205341.1\|2607660_2608845_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_001222527.1\|2608963_2609311_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_000487135.1\|2609296_2609608_-	hypothetical protein	NA	NA	NA	NA
WP_000673492.1\|2609676_2609928_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_001589065.1\|2610123_2610222_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_000512149.1\|2610360_2610609_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_020438048.1\|2610922_2611564_-	membrane protein	NA	NA	NA	NA
WP_000513733.1\|2611793_2611976_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_001248993.1\|2611978_2612341_-	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_000457190.1\|2612514_2613153_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_000617990.1\|2613349_2613895_-	chorismate mutase	NA	NA	NA	NA
WP_000908466.1\|2613977_2614133_+	hypothetical protein	NA	NA	NA	NA
WP_000208086.1\|2614211_2614460_+	hypothetical protein	NA	NA	NA	NA
WP_000190263.1\|2614714_2615563_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_001738208.1\|2615631_2616225_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000175795.1\|2616369_2617158_-	cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9)	NA	NA	NA	NA
WP_023233865.1\|2617266_2617917_-	metal-binding protein ZinT	NA	NA	NA	NA
WP_001183699.1\|2618110_2618437_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
WP_050068351.1\|2618630_2619764_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_001748355.1\|2619845_2620436_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_024158791.1\|2620429_2621227_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_000966643.1\|2621220_2622033_-	ABC transporter permease	NA	NA	NA	NA
WP_001520270.1\|2622022_2622997_-	ABC transporter permease	NA	NA	NA	NA
WP_153781998.1\|2622996_2624631_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000182479.1\|2625312_2625627_+	hypothetical protein	NA	NA	NA	NA
WP_000929982.1\|2625775_2626306_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	2.8e-36	70.5
2626318:2626332	attL	NA	NA	NA	NA
WP_079986795.1\|2626387_2627431_-	exo-alpha-sialidase	NA	NA	NA	NA
WP_001624421.1\|2627769_2628240_-	Hsp20 family protein	NA	NA	NA	NA
WP_000927827.1\|2628389_2628662_-	hypothetical protein	NA	NA	NA	NA
WP_000758946.1\|2628861_2628987_-	hypothetical protein	NA	NA	NA	NA
WP_000977725.1\|2629364_2629709_+	c-type lysozyme inhibitor	NA	NA	NA	NA
WP_000789471.1\|2630930_2631488_-	virulence membrane protein PagC	Q9LA63	Enterobacterial_phage	1.0e-15	33.0
WP_001535993.1\|2632299_2632563_+	virulence protein PagD	NA	NA	NA	NA
WP_001537306.1\|2632694_2632907_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_001532066.1\|2633322_2633844_+	lipoprotein	NA	NA	NA	NA
WP_000289207.1\|2634034_2634274_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	1.9e-32	87.3
WP_001033398.1\|2634763_2635552_+	hypothetical protein	NA	NA	NA	NA
WP_079986793.1\|2636542_2637667_-	type III secretion system effector SopF	NA	NA	NA	NA
WP_001521673.1\|2638127_2638340_-	isocitrate dehydrogenase	Q77Z09	Phage_21	1.5e-20	92.6
WP_000334551.1\|2638593_2639265_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.1e-80	59.9
WP_001520226.1\|2639584_2641696_-	type III secretion system effector E3 ubiquitin transferase SspH1	Q9MBL9	Phage_Gifsy-2	2.1e-26	46.9
WP_000457876.1\|2643229_2643355_-	hypothetical protein	NA	NA	NA	NA
WP_047594311.1\|2644223_2644802_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.8e-87	83.6
WP_153781943.1\|2644801_2647231_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	1.3e-88	63.7
WP_000178849.1\|2647284_2647527_-	hypothetical protein	NA	NA	NA	NA
WP_047588350.1\|2647565_2650928_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	80.2
WP_006669493.1\|2650990_2651638_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	7.1e-90	78.6
WP_000662740.1\|2651535_2652273_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-128	84.6
WP_023229841.1\|2652279_2652978_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	1.2e-103	75.9
WP_000447370.1\|2652987_2653317_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	7.3e-43	71.3
WP_047588341.1\|2653319_2656361_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	4.1e-289	64.8
WP_077915924.1\|2656332_2656671_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	6.0e-32	63.6
WP_000479607.1\|2656667_2657063_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_077915925.1\|2657113_2657860_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.8e-100	77.7
WP_000033885.1\|2657867_2658269_-\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000677089.1\|2658265_2658844_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000083293.1\|2658830_2659208_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-28	55.6
WP_000201486.1\|2659218_2659578_-	DNA packaging protein	NA	NA	NA	NA
WP_000522566.1\|2659635_2660664_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_047588326.1\|2660718_2661066_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.4e-20	53.8
WP_047594315.1\|2661078_2662575_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	4.0e-96	52.1
WP_023237960.1\|2662564_2664145_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.3e-189	63.0
WP_039513171.1\|2664141_2664345_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	9.5e-17	72.3
WP_039513168.1\|2664328_2666260_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.8e-258	65.7
WP_001102153.1\|2666231_2666777_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000669693.1\|2667062_2667464_+	hypothetical protein	NA	NA	NA	NA
WP_024133404.1\|2667699_2668149_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.9e-57	85.7
WP_047588313.1\|2668181_2668808_-	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	5.1e-93	79.7
WP_000781783.1\|2668810_2669158_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.3e-45	80.4
WP_001110787.1\|2669427_2670114_+\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	3.6e-132	99.6
WP_000657897.1\|2670328_2670517_-	hypothetical protein	NA	NA	NA	NA
WP_000211410.1\|2671025_2671589_-	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
WP_047594317.1\|2671861_2672539_-	antiterminator	I6PDF8	Cronobacter_phage	5.0e-62	54.0
WP_047594319.1\|2672538_2672676_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.1e-08	78.9
WP_001604756.1\|2672672_2672900_-	Bacteriophage lambda NinG	A0A0M4RU10	Salmonella_phage	6.2e-17	72.5
WP_058663890.1\|2672896_2673496_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.0e-95	82.9
WP_023209018.1\|2673559_2673865_-	hypothetical protein	NA	NA	NA	NA
WP_047594324.1\|2674495_2676475_-	MBL fold metallo-hydrolase	A0A2P0VMX1	Tetraselmis_virus	1.1e-162	46.3
WP_024146760.1\|2676871_2678023_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_001604747.1\|2678288_2678684_-	DUF977 family protein	A0A088CBK9	Shigella_phage	5.8e-18	38.8
WP_023225836.1\|2678701_2679454_-	replication protein	A0A088CBP4	Shigella_phage	7.7e-104	77.0
WP_052031995.1\|2679460_2680336_-	hypothetical protein	A0A088CD36	Shigella_phage	9.1e-32	58.5
WP_001672225.1\|2680381_2680876_-	hypothetical protein	NA	NA	NA	NA
WP_001033911.1\|2680862_2681117_-	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
WP_001574209.1\|2681215_2681614_+	helix-turn-helix domain-containing protein	K7PH19	Enterobacteria_phage	1.2e-18	56.0
WP_001525799.1\|2682044_2682224_-	hypothetical protein	NA	NA	NA	NA
WP_023233097.1\|2682654_2682939_+	hypothetical protein	K7PGY4	Enterobacteria_phage	1.7e-08	53.2
WP_045718428.1\|2683013_2683349_+	hypothetical protein	NA	NA	NA	NA
WP_058663886.1\|2683486_2686177_+	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	3.7e-116	75.6
WP_001126032.1\|2686169_2687000_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
WP_001033922.1\|2687035_2687356_+	hypothetical protein	A0A222YY67	Escherichia_phage	1.8e-33	59.2
WP_000066251.1\|2687348_2687681_+	hypothetical protein	S4TNP2	Salmonella_phage	8.8e-20	81.8
WP_000069466.1\|2687677_2688181_+	hypothetical protein	A0A075B8H2	Enterobacteria_phage	6.0e-36	92.3
WP_000089141.1\|2688230_2688467_+	excisionase	NA	NA	NA	NA
WP_023139988.1\|2688456_2689599_+\|integrase	tyrosine-type recombinase/integrase	O21929	Phage_21	1.8e-173	80.0
WP_000444508.1\|2689712_2690963_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_001249412.1\|2691134_2691800_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000825952.1\|2691796_2692126_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_000476071.1\|2692137_2692599_+	NUDIX hydrolase	NA	NA	NA	NA
WP_000004540.1\|2692652_2693759_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
2696392:2696406	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2839638 : 2882194

Escherichia_phage(37.14%)

protease,integrase,terminase,lysis,tail

attL 2845447:2845460|attR 2886824:2886837

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000938180.1\|2839638_2840319_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.8e-83	71.5
WP_058652155.1\|2840703_2840970_+	hypothetical protein	A0A0M3ULK3	Salmonella_phage	1.3e-37	87.4
WP_072208501.1\|2841434_2842925_+	type III secretion effector GogB	Q9MBM1	Phage_Gifsy-1	6.1e-254	98.4
WP_001216644.1\|2843389_2843614_+	hypothetical protein	NA	NA	NA	NA
WP_058652153.1\|2843733_2844315_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	7.8e-96	90.1
WP_058652152.1\|2844314_2846024_-\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	1.5e-91	66.0
2845447:2845460	attL	NA	NA	NA	NA
WP_058652151.1\|2846020_2846647_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	6.6e-93	72.1
WP_065314153.1\|2846630_2847857_-	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	2.4e-147	63.4
WP_001261467.1\|2847853_2848186_-	hypothetical protein	NA	NA	NA	NA
WP_058652150.1\|2848182_2848899_-	hypothetical protein	NA	NA	NA	NA
WP_024154636.1\|2848895_2849939_-	hypothetical protein	NA	NA	NA	NA
WP_000061271.1\|2849938_2850214_-	hypothetical protein	NA	NA	NA	NA
WP_000011138.1\|2850210_2850927_-	hypothetical protein	A0A0U2JGI7	Escherichia_phage	1.3e-28	36.5
WP_058652149.1\|2850926_2852981_-	hypothetical protein	A0A2R3UAN6	Myoviridae_environmental_samples	2.9e-20	35.8
WP_000268743.1\|2853104_2853692_-	hypothetical protein	NA	NA	NA	NA
WP_058652148.1\|2853691_2854129_-	hypothetical protein	NA	NA	NA	NA
WP_058652147.1\|2854132_2855527_-	hypothetical protein	A0A0U2KD19	Escherichia_phage	2.7e-70	36.8
WP_023225461.1\|2855532_2856471_-	hypothetical protein	A0A0U2SH76	Escherichia_phage	2.9e-52	39.9
WP_031604700.1\|2856454_2856865_-	hypothetical protein	NA	NA	NA	NA
WP_001114360.1\|2856882_2857308_-	hypothetical protein	NA	NA	NA	NA
WP_001643824.1\|2857320_2857806_-	hypothetical protein	NA	NA	NA	NA
WP_001110972.1\|2857870_2858902_-	DUF2184 domain-containing protein	A0A0U2QQI2	Escherichia_phage	1.5e-73	45.5
WP_023181116.1\|2858919_2859792_-	hypothetical protein	NA	NA	NA	NA
WP_058652146.1\|2859812_2861387_-	NUDIX hydrolase	Q6UJ14	Burkholderia_virus	1.7e-20	48.6
WP_058652145.1\|2861387_2862263_-	hypothetical protein	A0A0U2I1R8	Escherichia_phage	4.1e-40	39.0
WP_058652144.1\|2862234_2863665_-	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	2.6e-92	37.9
WP_058652143.1\|2863664_2864936_-	hypothetical protein	A0A0U2JTW9	Escherichia_phage	1.1e-83	38.3
WP_058652142.1\|2864925_2865900_-\|terminase	terminase small subunit	C5IHM0	Burkholderia_virus	1.1e-28	37.3
WP_058652141.1\|2865980_2866181_-	hypothetical protein	NA	NA	NA	NA
WP_001113128.1\|2866259_2866442_-	DUF826 domain-containing protein	NA	NA	NA	NA
WP_125744431.1\|2866667_2867108_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.2e-53	78.7
WP_020898616.1\|2867128_2867617_-	lysozyme	M9P0E5	Enterobacteria_phage	2.3e-56	67.5
WP_001526513.1\|2867594_2867897_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000658037.1\|2868099_2868288_-	hypothetical protein	NA	NA	NA	NA
WP_000640103.1\|2868680_2869259_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.4e-44	52.0
WP_000717784.1\|2869255_2869549_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	2.1e-33	65.3
WP_001643788.1\|2869545_2870142_-	DUF1367 family protein	H9C173	Pectobacterium_phage	6.5e-82	74.2
WP_000474096.1\|2870210_2870402_-	hypothetical protein	NA	NA	NA	NA
WP_058652139.1\|2870585_2870924_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.1e-49	85.7
WP_000180135.1\|2870923_2871094_-	hypothetical protein	I6S1S6	Salmonella_phage	6.3e-06	87.5
WP_010835728.1\|2871090_2871693_-	restriction endonuclease subunit M	A0A2R9YJG0	Escherichia_phage	7.8e-99	87.8
WP_000918618.1\|2871685_2871934_-	hypothetical protein	NA	NA	NA	NA
WP_010835727.1\|2871937_2872618_-	hypothetical protein	NA	NA	NA	NA
WP_010835726.1\|2872655_2874044_-	helicase DnaB	Q76H51	Enterobacteria_phage	2.3e-106	47.3
WP_058652138.1\|2874040_2875021_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	4.0e-44	79.6
WP_001195066.1\|2875023_2875248_-	hypothetical protein	H9C163	Pectobacterium_phage	1.0e-08	44.7
WP_001643782.1\|2875270_2875717_-	hypothetical protein	H9C162	Pectobacterium_phage	5.5e-25	50.4
WP_023228218.1\|2875781_2875985_-	transcriptional regulator	K7PHK4	Enterobacteria_phage	4.0e-07	46.6
WP_024142132.1\|2876063_2876465_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.5e-37	55.6
WP_000387662.1\|2877118_2877442_+	hypothetical protein	NA	NA	NA	NA
WP_023228220.1\|2877449_2877695_+	hypothetical protein	A0A1B1W282	Salmonella_phage	3.5e-13	53.8
WP_058652137.1\|2877724_2879998_+	hypothetical protein	H9C157	Pectobacterium_phage	1.8e-108	35.2
WP_010835720.1\|2879994_2880549_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	9.8e-48	59.3
WP_000916251.1\|2880551_2880734_+	hypothetical protein	NA	NA	NA	NA
WP_001643772.1\|2880946_2881171_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_058652136.1\|2881171_2882194_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	3.0e-90	52.9
2886824:2886837	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045831

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection