CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP033249	Clostridium butyricum strain CFSA3989 chromosome, complete genome	7 crisprs	cas3,csa3,DEDDh,DinG,RT,WYL	0	0	6	0
NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	2 crisprs	WYL,DEDDh,RT,csa3	0	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP033249_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033249_1

309769-309916

Orphan

Consensus_repeat	Method
TTTTTTTTAAGGAAACTCGACTCACATACGTTCGCTGAGTAAGTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033249_1

>merge|NZ_CP033249|1|309769-309916|CRISPRCasFinder
TTTTTTTTAAGGAAACTCGACTCACATACGTTCGCTGAGTAAGTTCGCTTAACTAAATCATAGATTTGAGGAATTGATTGAGTGAATGTGGATGTTTAGAGTTTTTTTTAAAGGAAACTCGACTCACATACGTTCGCTGAGTAAGTTC

>NZ_CP033249|1|1|309769-309916|CRISPRCasFinder
TTTTTTTTAAGGAAACTCGACTCACATACGTTCGCTGAGTAAGTTC	GCTTAACTAAATCATAGATTTGAGGAATTGATTGAGTGAATGTGGATGTTTAGAGT
TTTTTTTAAAGGAAACTCGACTCACATACGTTCGCTGAGTAAGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033249.1\|WP_045144756.1\|316318_316669_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP033249.1\|WP_002582698.1\|318818_319571_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP033249.1\|WP_045144468.1\|306983_308303_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP033249.1\|WP_002582700.1\|321406_321718_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|224364
NZ_CP033249.1\|WP_045145033.1\|310237_312064_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP033249.1\|WP_002582688.1\|301581_302067_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP033249.1\|WP_002582690.1\|303645_306849_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP033249.1\|WP_033127302.1\|308433_309465_+\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|376628
NZ_CP033249.1\|WP_002582684.1\|295997_296999_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP033249.1\|WP_153739040.1\|314216_314846_+\|DUF3990-domain-containing-protein	unknown	unknown	gnl\|CDD\|379042
NZ_CP033249.1\|WP_002582687.1\|300725_301523_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197313
NZ_CP033249.1\|WP_002582695.1\|314862_315390_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033249.1\|WP_134787688.1\|316771_317476_+\|transposase	unknown	unknown	gnl\|CDD\|379016
NZ_CP033249.1\|WP_080776183.1\|317770_317905_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376980
NZ_CP033249.1\|WP_002582685.1\|297264_298938_+\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|200472
NZ_CP033249.1\|WP_052661670.1\|317518_317734_+\|transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP033249.1\|WP_153739039.1\|309545_309689_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033249.1\|WP_002582710.1\|316047_316326_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033249.1\|WP_153739038.1\|302390_303641_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP033249.1\|WP_002582686.1\|299064_300720_+\|PTS-IIBC-component	unknown	unknown	gnl\|CDD\|131058

Protein	Function_ID	Function_description	E-value
NZ_CP033249.1\|WP_045144756.1\|316318_316669_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	7.28822e-38
NZ_CP033249.1\|WP_002582698.1\|318818_319571_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	5.71608e-86
NZ_CP033249.1\|WP_002582688.1\|301581_302067_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	3.11468e-15
NZ_CP033249.1\|WP_002582700.1\|321406_321718_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|224364	COG1447, CelC, Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism].	1.76357e-36
NZ_CP033249.1\|WP_045145033.1\|310237_312064_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP033249.1\|WP_002582690.1\|303645_306849_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP033249.1\|WP_002582684.1\|295997_296999_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	6.76559e-106
NZ_CP033249.1\|WP_033127302.1\|308433_309465_+\|cell-wall-binding-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	2.87979e-13
NZ_CP033249.1\|WP_153739040.1\|314216_314846_+\|DUF3990-domain-containing-protein	gnl\|CDD\|379042	pfam13151, DUF3990, Protein of unknown function (DUF3990). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	2.28608e-05
NZ_CP033249.1\|WP_080776183.1\|317770_317905_+\|hypothetical-protein	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	0.000488742
NZ_CP033249.1\|WP_002582687.1\|300725_301523_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197313	cd09079, RgfB-like, Streptococcus agalactiae RgfB, part of a putative two component signal transduction system, and related proteins. This family includes Streptococcus agalactiae RgfB (for regulator of fibrinogen binding) and related proteins. The function of RgfB is unknown. It is part of a putative two component signal transduction system designated rgfBDAC (the rgf locus was identified in a screen for mutants of Streptococcus agalactiae with altered binding to fibrinogen). RgfA,-C,and -D do not belong to this superfamily: rgfA encodes a putative response regulator, and rgfC, a putative histidine kinase. All four genes are co-transcribed, and may be involved in regulating expression of bacterial cell surface components. This family belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.	2.19468e-109
NZ_CP033249.1\|WP_052661670.1\|317518_317734_+\|transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	8.1436e-20
NZ_CP033249.1\|WP_002582685.1\|297264_298938_+\|alpha-glucosidase	gnl\|CDD\|200472	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins. The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP033249.1\|WP_045144468.1\|306983_308303_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.0413e-05
NZ_CP033249.1\|WP_134787688.1\|316771_317476_+\|transposase	gnl\|CDD\|379016	pfam13005, zf-IS66, zinc-finger binding domain of transposase IS66. This is a zinc-finger region of the N-terminus of the insertion element IS66 transposase.	6.37673e-10
NZ_CP033249.1\|WP_153739038.1\|302390_303641_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.02606e-55
NZ_CP033249.1\|WP_002582686.1\|299064_300720_+\|PTS-IIBC-component	gnl\|CDD\|131058	TIGR02003, PTS_system_glucose-specific_IIBC_component, PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0

>NZ_CP033249.1|WP_153739039.1|309545_309689_+|hypothetical-protein
MWIIYFFLFFLWKFKKKAILYIIDKIYLYDKIYAGYKMSRERCDGDR
>NZ_CP033249.1|WP_033127302.1|308433_309465_+|cell-wall-binding-protein
MKNIGKATILSLGLAFVCSVTAFADTSSNDKLENEIYNHMINRDDVFYFTYYSNSALDLLQEVAKKDDYLERSIAVYKTRKAGYFFEAEIQYRTNKEQEDYINSELSRIVNNLIDSRMSTEEKIEAINNYVVKIYKYDDTLKSDNVYTALTTKSTICQGYAMTVYKMLNILGIDCRIINGDKSGTSHAWNLVKIDGVWYHLDSTNNDNIVRDKYLLKSDDYMIENGFTWDKTQYPSASSNYFLNKTEYLDYNNDKENDISEYYEGGYWYKDNNSKWHYKRNSGYEVMGWFKYNNNWYYFGEDCIMKTGWINTDGNWYYLYSNGMLATNTIIDGYSLDENGVLH
>NZ_CP033249.1|WP_045144468.1|306983_308303_+|TolC-family-protein
MRKNLNKIVAFAIGVSVISGLAIPVMADTKVTYANSDSTNQNNAKQVLTLEDAINGAKSCSNTIAILDENIRLMQNINSLSDKKDDVVNSSDDSGSGLTDTQKDYDEDKRKLQLNQLEQKRDFMVDKLSQSVTNAYNALIISQLEISQLKNDIELQKTEIQQYNLKKSLGLVTDINIDQVNLGLQKNLNDLDNKQNTLKDDKENFKVLTGKDVDQYTLEDKIEYKKFALDGSLDEYLDGVIDEYVSYTQEINDLNKDFWNDDDNKVGNDKVSDAKKFYESMKDSTPPKLSDYLKEGQSYDEKITAIETYISKSSTYTNGLSYYTGMIGARMNYLQNKSSVTTSELELNETKDQYKKALRTMYTNLLNIEKSIDLLNSNVELSNKQLRINKINYDLGLKTKLDYDKSVSESETLNNQLKSTINSYNTLKAQLEKPWIALS
>NZ_CP033249.1|WP_002582690.1|303645_306849_+|efflux-RND-transporter-permease-subunit
MSMTKTSVKRPLTIIMVFLVVLMFGGIGYSKMPANLMPDIDVPVALVMTQWSGAGPEDIDDQISEPIEKSLSSISNVKTTVSKSSEGVSMVVAQFEYGTDVDEKLNDIRSKIDTVKMTLPDDVDTPSILKMDMNAQAIAQIVVSGEGSSDDIMKYAEDTVQVKLESIDGITSADINGGDKTQINVIADPTILSSYGVSLDTIKGLLSATNKSYPYGSITQGDDKIVIRSVDKVEALEDIKAIQIPMSNGETVSLDKICTVEYGTVDKQSIYRYNGQESLVMDVQKQQDANTVQVMKNVNSKISELNNENSQFNLKIVNDTSEYINSSINDVMKNLILSAVIAFFVILLFLKSGRASFVVAVSIPTSIIGAIALLYFTGETLNMVTLSSLVIAVGMVVDNATVVIENIFKYRKDPNLSLEEAAIQGTNTVSTAVMASTLTTVAIFLPILFTEGFTKIMFGSLAKTLIFALTLSLIVALTLVPSIFAKLSGGKNGAKMEEKPSPIFDKISEGYKNIIVLALKHKAVVILISVGMFIGAIVLGATGAIGMDFMSSGDEGMVSISIKLPEGLDLEPSDYYVSMAEEKVSDIPEIETMITQIGSGSAMGSGGSTASISLDLVSSKERKRTTDEIEQDVVERLKVIPDCEINVSQTSSMSMGGSGDAQVDIKGPDLDVLEEIVNQAKANVEKVSGFRNIETSLADSNKEAQFKIDKRKASLLGINTSSIASTLRTAISGSDATTVTIDDYDYDVNLKFKDSSINSIDDIGQIKVTSASGQQVPLNAFAEIKMADGLKSISRTDGDYSVSITAKADNMDTSTASRLLTQAVNEVDMPRDYSIDVGGSAEMMNESMSSLVMAMVIALILVYMVMVAQFESFSKPFIIMFSIPFAFVGVVIALVISRISLNVVGMLGAILLVGIVVNNGIVLIDYIGQLREAKVQGTLEDIVAKGCAARLRPVLMTTMTTVVGMIPSALAFGEGGDMMQPLAVVIIGGLSVSTLVTLVLIPTVYLIFDKIENSLRSKFGQIFDKIKIPHIGPKKSKMDINILSKDIEDKKESKNDDAHEKDSDLKK
>NZ_CP033249.1|WP_153739038.1|302390_303641_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKYLIALLLTVSTFMLTGCGSTEPVQEEKAIAVSVQSAKGGDIENTNIFSGTTKIKDETAVTVEMGGTIEEMNVQLGEKVTKGQTLLKIKGTDIENSIKSAQAAVNSAQAAYNDSDVSMANTENQLESGLTNAKVAYDKAVSGYEETKRQFDNTTQLYEAGAISENDYKQAKANLEQTQRSVDQAKASLDAAQKSYDTGVGNRESAKAAIESAKVGLESALSNRDKLTLQSPVDGVITAKNFDVNEMATQGQPAFIISSPDILQIDLSITQADIGKFSEGQTVSVKIDEQVIDGTVNYVPTVAEASSSLYKVEVLIDNSEGQFKSGMSAEVEVSIEKESNVVKVPKKAILEEEGNKYVYIVGDDNRAVKKEISTGIETADTVEIKSGVESDDTVVIGGLSLISDNTKLFPVVKED
>NZ_CP033249.1|WP_002582688.1|301581_302067_-|MarR-family-transcriptional-regulator
MSDSKLYKTSCMLLDFLSLVRDGLFIENDFTKNFPINSNEFQTKICSLSMPPSHINVILYLAKVKSSPISHIAKKLNISKSNMTPIIDKLIDLELVHRYTDSKDRRILRVELTPKAIELFEYVESAAKDAIKNKISTLSDEDLNDLTSSLDTLSTIFKKLK
>NZ_CP033249.1|WP_002582687.1|300725_301523_+|endonuclease/exonuclease/phosphatase-family-protein
MKLLTLNCHSWQEENQLDKIKYLAKVISEKNYDVIALQEVSQSIDCKIIDGILKEDNFIVLLKEELNKFTKSNYEFYWDFSHIGYDIYEEGLAIMTRHKFINSESFFITKSTDRTYWKTRKIIKSSIEINNKEVDFYSCHLGWWKDDEEPFTYQADKLLDTVNSKKTAIFMGDFNNNAFVRNEGYDYLINKNLNDLYLKTDKSEEECSATVKGKIDGWDENKEKLRLDLILSNELLKVKNARVIFNGINKEIISDHYGVELEIDF
>NZ_CP033249.1|WP_002582686.1|299064_300720_+|PTS-IIBC-component
MGNSKGKLFSFEFWQKFGKALMVVVAVMPAAGLMICIGKLIGMCGDLSLLKTVANVVEQLGWGIIGNLHVLFAVAIGGSWAKERAGGAFAALIAFILINLTTGSIFGVTSDMLSDPNATVTSLFGQNLIVGNYFTSILGNPALNMGVFVGIISGFLGASLYNKYYNFNKLPNALSFFNGKRFVPFVVIAGSVVTAIILAIVWPFAQSGLNAFGMWLAKSKDTAPIISPFIYGCLERLLLPFGLHHMLTIPVNYTELGGVYTVMTGANTGSIISGQDPLWYAWISDLINLKGAGDTAAYNNLLATVTPARFKFGQVILSSASLIGAALAMYRNVDEDKKKKYKSMFLSAGLAVFLTGVTEPLEFMFMFVSPILYGIYAVIAGIGFAVADLINVRIQAFGFVEFLTRIPMFAKAGIIMDVVNFVICAVIFFGLNYFVFNFLIKKLNLATPGRRGNYIEDEEETGKEAAVTKVSGNDLAVKIISLLGEKDNIVDVDACMTRLRVTVKDKALVAGEKEWKQNGAMGLVVKDKGIQAIYGPKADVLKSDIQDILGV
>NZ_CP033249.1|WP_002582685.1|297264_298938_+|alpha-glucosidase
MKKVWWKEAIGYQIYPRSFKDSNGDGIGDLKGIISKLDYLKDLGIDVIWICPMYKSPNDDNGYDISDYQDITEEFGTMEDFDELLREVHQRGMKLIIDLVVNHTSDEHKWFIESKSSKDNPKRDWYIWKEGKNGAEPNNWESIFKGSAWEKDDITEEYYLHLFTKKQPDLNWENPEVRKAIFEMINWWLDKGIDGFRVDAISHIKKDQTFEDLPNPDKKDYVESFDKHMNYKGIHMFLNELKQETFSKYDIMTVGEANGVKAEVDAELWVGEENGSFNMVFQFEHLDLWESDDSDGISKIIKLKKALSKWQDSLYGIGWNALFVENHDISRVISTLGNDDKYRSECAKAFALMYFMQQGTPFIYQGQEIGMTNVKFHSIKDYDDVKSINIYNELVESGESEENALEHVWSISRDNARTPMQWNSSKYAGFSDNKPWIGLNENYLEINVEDELKDDNSILNFYKNLIKIKKSNEALIYGKYELILEEHEQIYAYMRVENEEKYLVLCNLSNDYVNYCYDELQLDSDNLLISNYKVDKHSQSHSFELKPWECRLYKINN
>NZ_CP033249.1|WP_002582684.1|295997_296999_+|LacI-family-transcriptional-regulator
MKVTIKEVAKEANVSTSTVSRVISDSPQISEKTKEKVREVITRLNYKPNAIARSLANKKTRIIGVVLPSEAQDLFFNPFFLKAMQGMSSYAKKKKYYITYAFSDNEKEEVNYIKDFITSNLIAGICLLRLRTDDKSIEYLKRADFPFVVIGRPENPESMLWVDNDNFKSTYNLMNTLIKKGHKDIAFLGAKEELTVTKDRLKGYKVACEMNGLTCADKNIIMKTEFNEDEGFNGALELFDKSNPTAVLVQDDLLAFGLLKALKDKGIENVSVVAFNNTPLAEFQEPPLASVDINASELGYYAAKVLIEYLENNNVDDNHYIVDSKLIERESLR
>NZ_CP033249.1|WP_045145033.1|310237_312064_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYLGSGKATSFLINGLSKLEYRGYDSAGVAVVNNGNIEVRKFKGRLANLAENIKEHPVEGSMGIGHTRWATHGAPSDVNSHPHLNSKETIAVVQNGIIENYLPLRNWLKGEGYTFKSETDTEVIPNLIDYYYEGDLFKAVTKALKKLEGSYALGVVCKNEPDKLIAVRKECPLIVGLGKCESFIASDIPAVLSYTRDVYLLEDHEIAVLDKNGVKLYTTDGDEITKDIYHVTWSEDAAEKGGFEDFMLKEIHEQPKAIRDTMAGRISMEKSMILDDLKITKEDLENTDRVFIVACGTAYHAGLVGKNVIESLARIPVEVDIASEFRYRNPLVTDKSLVIVVSQSGETADTLAALRNCKTIGATIVALTNVVGSSVSREADHVLYTLAGPEISVASTKAYTTQIIGMYMIAMTFAKILGKLKSDRLDKLKEELLDLPGKVELVLEDKEKIKAIAEKMYKEDDMFYLGRGIDYAVALEGSLKLKEISYIHSEAYAGGELKHGPIALIEDGTEVITLLTQEALKEKMVSNVVEIKARGAKVTGICYEGTKGLEEVLDEIIYIPRTLDMFAPVLSVAVLQLFSYYVAKAKGCDIDKPRNLAKSVTVE
>NZ_CP033249.1|WP_153739040.1|314216_314846_+|DUF3990-domain-containing-protein
MTENNNIINLYYGTKNLELDFKYKIDPDFDGGKIFEFGNGFYLTPNKDLAESYAKHNSLIELAAPKNRPSLDILMKGIIVSGHLHIYELDYNNFKKNTNVKEFESIKDYRNVLKETLGGYNENINYRPNRDATFGEICGQFWDDYWDEGNSNRGKLSHDELIEKCIEEMKKNAGKRERQICIHKTKIGPNEQNIFDEFLKKVDCKEITL
>NZ_CP033249.1|WP_002582695.1|314862_315390_+|hypothetical-protein
MKIGKEGIKLVILFQEKLGISLSEAVIILLKNKTAQSLLKEELALSITGTNKNLSALMSITVQREFYDFELIRPDEIELIRQYYDIEIGKDNFLTTSGIKRVSKCEINKNIEELVKLYVDKFLRRERIYNLISKNSSVGEDTTKRGFLKAANSSRIKTVINKENICKMKEDYLDK
>NZ_CP033249.1|WP_002582710.1|316047_316326_+|hypothetical-protein
MIDKLSSYSGTIKDFCKENNILEKKFYYHRRKLANKNKVVFHEIPLKSENTSAVSITNESDIKIKIGKATIYIPANEIAALTAIVRNLSCNV
>NZ_CP033249.1|WP_045144756.1|316318_316669_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MFNIYKIDTVYIACGVTDLRKSIDGLIMIMKNELKLNPFEKALFVFCNKQMNRIKILHFDEGFWRYYYRLENGILKWPKTREEAIKAEKKELIWLLKGYEIRTKSKIKSVKEENSF
>NZ_CP033249.1|WP_134787688.1|316771_317476_+|transposase
MEDKNFDELDDKTKVIISKMEKAIKEKDSEIKNKNEEIEDLKNQIALLKGQILNKNSKIFGQSSEQANEDQLSFFNEAEKDSDSKISEPDLETITYARKKAVSHNGKKDNTANLKRVVIEHKLDNSKKICDKCGTQLSFIGTQKKELLKFKPAEIYIEEHITEVWACKKCEAEADKANIISAATPKTLLHKSMASNELAAHVITMKYLHSMPLTRMETYFHMMDVRLSKQTLSN
>NZ_CP033249.1|WP_052661670.1|317518_317734_+|transposase
MKHNLLKSSYVHAYEMPIKVIDSKGKESKSKHYMWVYVSDTEDSSIILYDYQKTRSSSCPTKFLEGFSGYL
>NZ_CP033249.1|WP_080776183.1|317770_317905_+|hypothetical-protein
MKRLYCLAHIRRKFFDIVTELHGDALKHSRAIIGFNYCEKLYIL
>NZ_CP033249.1|WP_002582698.1|318818_319571_-|DeoR/GlpR-transcriptional-regulator
MLKEERHRSIVNLLQEKGIIKVKDITNLMNVTEMTVRRDLQELENKGVLQRIHGGAQLSNSLILTELSHYEKQNINIDSKKDIARKIANFINNGDLIFLGIGTTIELVYEFINVDYLKIVTNSLHIFNKFINNPKYELILVGGSYRNRTGAFVGAIANDVLSKLKINKAFIGVNGIYDNNISNSNEDEGTIQSIVLNNSSEKYIIADSSKLNKYDFYQFYNLKDVTALITDNKINDENLSRYSKYTKIIF
>NZ_CP033249.1|WP_002582700.1|321406_321718_+|PTS-lactose/cellobiose-transporter-subunit-IIA
MSVSKQDLEQIAFEIVAYSGDARSKLLQAVKEAKNKNFEVCRKLIEDAKECLASAHKSQTLFITSEAQGDNIEISFLTVHAQDHLMTTILLKDIIDSLLDIYI

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Crispr_ID: NZ_CP033249_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033249_2

315579-315717

Orphan

Consensus_repeat	Method
TTTTGATTAAACTTTATT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP033249_2

>merge|NZ_CP033249|2|315579-315717|PILER-CR
TTTTGATTAAACTTTATTACAAAAATTAAATAAGGCTATTTGTAAAAATTAAAGTTTTGATTAAACTTTATTTTAAATTATATTTTATTAAATTATGTGTTTATCACATTTATAGACTCTAGTTTGATTAAACTTTATT

>NZ_CP033249|2|1|315579-315717|PILER-CR
TTTTGATTAAACTTTATT	ACAAAAATTAAATAAGGCTATTTGTAAAAATTAAAG
TTTTGATTAAACTTTATT	TTAAATTATATTTTATTAAATTATGTGTTTATCACATTTATAGACTCTA
GTTTGATTAAACTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033249.1\|WP_045144756.1\|316318_316669_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP033249.1\|WP_002582698.1\|318818_319571_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP033249.1\|WP_045144468.1\|306983_308303_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP033249.1\|WP_002582700.1\|321406_321718_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|224364
NZ_CP033249.1\|WP_045145033.1\|310237_312064_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP033249.1\|WP_045145014.1\|323605_323845_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379554
NZ_CP033249.1\|WP_002582690.1\|303645_306849_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP033249.1\|WP_035779546.1\|322093_323248_+\|exo-alpha-sialidase	unknown	unknown	gnl\|CDD\|271234
NZ_CP033249.1\|WP_033127302.1\|308433_309465_+\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|376628
NZ_CP033249.1\|WP_153739040.1\|314216_314846_+\|DUF3990-domain-containing-protein	unknown	unknown	gnl\|CDD\|379042
NZ_CP033249.1\|WP_080776183.1\|317770_317905_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376980
NZ_CP033249.1\|WP_002582687.1\|300725_301523_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197313
NZ_CP033249.1\|WP_002582710.1\|316047_316326_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033249.1\|WP_134787688.1\|316771_317476_+\|transposase	unknown	unknown	gnl\|CDD\|379016
NZ_CP033249.1\|WP_002582703.1\|323861_324020_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377437
NZ_CP033249.1\|WP_052661670.1\|317518_317734_+\|transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP033249.1\|WP_153739039.1\|309545_309689_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033249.1\|WP_002582695.1\|314862_315390_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033249.1\|WP_153739038.1\|302390_303641_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP033249.1\|WP_002582688.1\|301581_302067_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759

Protein	Function_ID	Function_description	E-value
NZ_CP033249.1\|WP_045144756.1\|316318_316669_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	7.28822e-38
NZ_CP033249.1\|WP_002582698.1\|318818_319571_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	5.71608e-86
NZ_CP033249.1\|WP_045144468.1\|306983_308303_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.0413e-05
NZ_CP033249.1\|WP_002582700.1\|321406_321718_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|224364	COG1447, CelC, Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism].	1.76357e-36
NZ_CP033249.1\|WP_045145033.1\|310237_312064_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP033249.1\|WP_002582688.1\|301581_302067_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	3.11468e-15
NZ_CP033249.1\|WP_002582690.1\|303645_306849_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP033249.1\|WP_035779546.1\|322093_323248_+\|exo-alpha-sialidase	gnl\|CDD\|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	2.69928e-71
NZ_CP033249.1\|WP_033127302.1\|308433_309465_+\|cell-wall-binding-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	2.87979e-13
NZ_CP033249.1\|WP_153739040.1\|314216_314846_+\|DUF3990-domain-containing-protein	gnl\|CDD\|379042	pfam13151, DUF3990, Protein of unknown function (DUF3990). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	2.28608e-05
NZ_CP033249.1\|WP_080776183.1\|317770_317905_+\|hypothetical-protein	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	0.000488742
NZ_CP033249.1\|WP_002582687.1\|300725_301523_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197313	cd09079, RgfB-like, Streptococcus agalactiae RgfB, part of a putative two component signal transduction system, and related proteins. This family includes Streptococcus agalactiae RgfB (for regulator of fibrinogen binding) and related proteins. The function of RgfB is unknown. It is part of a putative two component signal transduction system designated rgfBDAC (the rgf locus was identified in a screen for mutants of Streptococcus agalactiae with altered binding to fibrinogen). RgfA,-C,and -D do not belong to this superfamily: rgfA encodes a putative response regulator, and rgfC, a putative histidine kinase. All four genes are co-transcribed, and may be involved in regulating expression of bacterial cell surface components. This family belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.	2.19468e-109
NZ_CP033249.1\|WP_153739038.1\|302390_303641_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.02606e-55
NZ_CP033249.1\|WP_002582703.1\|323861_324020_+\|hypothetical-protein	gnl\|CDD\|377437	pfam04986, Y2_Tnp, Putative transposase. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801. This is a rolling-circle transposase.	1.62244e-08
NZ_CP033249.1\|WP_045145014.1\|323605_323845_+\|hypothetical-protein	gnl\|CDD\|379554	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain. This domain is likely to be a zinc-binding domain. It is found at the N-terminus of transposases belonging to the IS91 family.	8.46876e-17
NZ_CP033249.1\|WP_052661670.1\|317518_317734_+\|transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	8.1436e-20
NZ_CP033249.1\|WP_134787688.1\|316771_317476_+\|transposase	gnl\|CDD\|379016	pfam13005, zf-IS66, zinc-finger binding domain of transposase IS66. This is a zinc-finger region of the N-terminus of the insertion element IS66 transposase.	6.37673e-10

>NZ_CP033249.1|WP_002582695.1|314862_315390_+|hypothetical-protein
MKIGKEGIKLVILFQEKLGISLSEAVIILLKNKTAQSLLKEELALSITGTNKNLSALMSITVQREFYDFELIRPDEIELIRQYYDIEIGKDNFLTTSGIKRVSKCEINKNIEELVKLYVDKFLRRERIYNLISKNSSVGEDTTKRGFLKAANSSRIKTVINKENICKMKEDYLDK
>NZ_CP033249.1|WP_153739040.1|314216_314846_+|DUF3990-domain-containing-protein
MTENNNIINLYYGTKNLELDFKYKIDPDFDGGKIFEFGNGFYLTPNKDLAESYAKHNSLIELAAPKNRPSLDILMKGIIVSGHLHIYELDYNNFKKNTNVKEFESIKDYRNVLKETLGGYNENINYRPNRDATFGEICGQFWDDYWDEGNSNRGKLSHDELIEKCIEEMKKNAGKRERQICIHKTKIGPNEQNIFDEFLKKVDCKEITL
>NZ_CP033249.1|WP_045145033.1|310237_312064_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYLGSGKATSFLINGLSKLEYRGYDSAGVAVVNNGNIEVRKFKGRLANLAENIKEHPVEGSMGIGHTRWATHGAPSDVNSHPHLNSKETIAVVQNGIIENYLPLRNWLKGEGYTFKSETDTEVIPNLIDYYYEGDLFKAVTKALKKLEGSYALGVVCKNEPDKLIAVRKECPLIVGLGKCESFIASDIPAVLSYTRDVYLLEDHEIAVLDKNGVKLYTTDGDEITKDIYHVTWSEDAAEKGGFEDFMLKEIHEQPKAIRDTMAGRISMEKSMILDDLKITKEDLENTDRVFIVACGTAYHAGLVGKNVIESLARIPVEVDIASEFRYRNPLVTDKSLVIVVSQSGETADTLAALRNCKTIGATIVALTNVVGSSVSREADHVLYTLAGPEISVASTKAYTTQIIGMYMIAMTFAKILGKLKSDRLDKLKEELLDLPGKVELVLEDKEKIKAIAEKMYKEDDMFYLGRGIDYAVALEGSLKLKEISYIHSEAYAGGELKHGPIALIEDGTEVITLLTQEALKEKMVSNVVEIKARGAKVTGICYEGTKGLEEVLDEIIYIPRTLDMFAPVLSVAVLQLFSYYVAKAKGCDIDKPRNLAKSVTVE
>NZ_CP033249.1|WP_153739039.1|309545_309689_+|hypothetical-protein
MWIIYFFLFFLWKFKKKAILYIIDKIYLYDKIYAGYKMSRERCDGDR
>NZ_CP033249.1|WP_033127302.1|308433_309465_+|cell-wall-binding-protein
MKNIGKATILSLGLAFVCSVTAFADTSSNDKLENEIYNHMINRDDVFYFTYYSNSALDLLQEVAKKDDYLERSIAVYKTRKAGYFFEAEIQYRTNKEQEDYINSELSRIVNNLIDSRMSTEEKIEAINNYVVKIYKYDDTLKSDNVYTALTTKSTICQGYAMTVYKMLNILGIDCRIINGDKSGTSHAWNLVKIDGVWYHLDSTNNDNIVRDKYLLKSDDYMIENGFTWDKTQYPSASSNYFLNKTEYLDYNNDKENDISEYYEGGYWYKDNNSKWHYKRNSGYEVMGWFKYNNNWYYFGEDCIMKTGWINTDGNWYYLYSNGMLATNTIIDGYSLDENGVLH
>NZ_CP033249.1|WP_045144468.1|306983_308303_+|TolC-family-protein
MRKNLNKIVAFAIGVSVISGLAIPVMADTKVTYANSDSTNQNNAKQVLTLEDAINGAKSCSNTIAILDENIRLMQNINSLSDKKDDVVNSSDDSGSGLTDTQKDYDEDKRKLQLNQLEQKRDFMVDKLSQSVTNAYNALIISQLEISQLKNDIELQKTEIQQYNLKKSLGLVTDINIDQVNLGLQKNLNDLDNKQNTLKDDKENFKVLTGKDVDQYTLEDKIEYKKFALDGSLDEYLDGVIDEYVSYTQEINDLNKDFWNDDDNKVGNDKVSDAKKFYESMKDSTPPKLSDYLKEGQSYDEKITAIETYISKSSTYTNGLSYYTGMIGARMNYLQNKSSVTTSELELNETKDQYKKALRTMYTNLLNIEKSIDLLNSNVELSNKQLRINKINYDLGLKTKLDYDKSVSESETLNNQLKSTINSYNTLKAQLEKPWIALS
>NZ_CP033249.1|WP_002582690.1|303645_306849_+|efflux-RND-transporter-permease-subunit
MSMTKTSVKRPLTIIMVFLVVLMFGGIGYSKMPANLMPDIDVPVALVMTQWSGAGPEDIDDQISEPIEKSLSSISNVKTTVSKSSEGVSMVVAQFEYGTDVDEKLNDIRSKIDTVKMTLPDDVDTPSILKMDMNAQAIAQIVVSGEGSSDDIMKYAEDTVQVKLESIDGITSADINGGDKTQINVIADPTILSSYGVSLDTIKGLLSATNKSYPYGSITQGDDKIVIRSVDKVEALEDIKAIQIPMSNGETVSLDKICTVEYGTVDKQSIYRYNGQESLVMDVQKQQDANTVQVMKNVNSKISELNNENSQFNLKIVNDTSEYINSSINDVMKNLILSAVIAFFVILLFLKSGRASFVVAVSIPTSIIGAIALLYFTGETLNMVTLSSLVIAVGMVVDNATVVIENIFKYRKDPNLSLEEAAIQGTNTVSTAVMASTLTTVAIFLPILFTEGFTKIMFGSLAKTLIFALTLSLIVALTLVPSIFAKLSGGKNGAKMEEKPSPIFDKISEGYKNIIVLALKHKAVVILISVGMFIGAIVLGATGAIGMDFMSSGDEGMVSISIKLPEGLDLEPSDYYVSMAEEKVSDIPEIETMITQIGSGSAMGSGGSTASISLDLVSSKERKRTTDEIEQDVVERLKVIPDCEINVSQTSSMSMGGSGDAQVDIKGPDLDVLEEIVNQAKANVEKVSGFRNIETSLADSNKEAQFKIDKRKASLLGINTSSIASTLRTAISGSDATTVTIDDYDYDVNLKFKDSSINSIDDIGQIKVTSASGQQVPLNAFAEIKMADGLKSISRTDGDYSVSITAKADNMDTSTASRLLTQAVNEVDMPRDYSIDVGGSAEMMNESMSSLVMAMVIALILVYMVMVAQFESFSKPFIIMFSIPFAFVGVVIALVISRISLNVVGMLGAILLVGIVVNNGIVLIDYIGQLREAKVQGTLEDIVAKGCAARLRPVLMTTMTTVVGMIPSALAFGEGGDMMQPLAVVIIGGLSVSTLVTLVLIPTVYLIFDKIENSLRSKFGQIFDKIKIPHIGPKKSKMDINILSKDIEDKKESKNDDAHEKDSDLKK
>NZ_CP033249.1|WP_153739038.1|302390_303641_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKYLIALLLTVSTFMLTGCGSTEPVQEEKAIAVSVQSAKGGDIENTNIFSGTTKIKDETAVTVEMGGTIEEMNVQLGEKVTKGQTLLKIKGTDIENSIKSAQAAVNSAQAAYNDSDVSMANTENQLESGLTNAKVAYDKAVSGYEETKRQFDNTTQLYEAGAISENDYKQAKANLEQTQRSVDQAKASLDAAQKSYDTGVGNRESAKAAIESAKVGLESALSNRDKLTLQSPVDGVITAKNFDVNEMATQGQPAFIISSPDILQIDLSITQADIGKFSEGQTVSVKIDEQVIDGTVNYVPTVAEASSSLYKVEVLIDNSEGQFKSGMSAEVEVSIEKESNVVKVPKKAILEEEGNKYVYIVGDDNRAVKKEISTGIETADTVEIKSGVESDDTVVIGGLSLISDNTKLFPVVKED
>NZ_CP033249.1|WP_002582688.1|301581_302067_-|MarR-family-transcriptional-regulator
MSDSKLYKTSCMLLDFLSLVRDGLFIENDFTKNFPINSNEFQTKICSLSMPPSHINVILYLAKVKSSPISHIAKKLNISKSNMTPIIDKLIDLELVHRYTDSKDRRILRVELTPKAIELFEYVESAAKDAIKNKISTLSDEDLNDLTSSLDTLSTIFKKLK
>NZ_CP033249.1|WP_002582687.1|300725_301523_+|endonuclease/exonuclease/phosphatase-family-protein
MKLLTLNCHSWQEENQLDKIKYLAKVISEKNYDVIALQEVSQSIDCKIIDGILKEDNFIVLLKEELNKFTKSNYEFYWDFSHIGYDIYEEGLAIMTRHKFINSESFFITKSTDRTYWKTRKIIKSSIEINNKEVDFYSCHLGWWKDDEEPFTYQADKLLDTVNSKKTAIFMGDFNNNAFVRNEGYDYLINKNLNDLYLKTDKSEEECSATVKGKIDGWDENKEKLRLDLILSNELLKVKNARVIFNGINKEIISDHYGVELEIDF
>NZ_CP033249.1|WP_002582710.1|316047_316326_+|hypothetical-protein
MIDKLSSYSGTIKDFCKENNILEKKFYYHRRKLANKNKVVFHEIPLKSENTSAVSITNESDIKIKIGKATIYIPANEIAALTAIVRNLSCNV
>NZ_CP033249.1|WP_045144756.1|316318_316669_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MFNIYKIDTVYIACGVTDLRKSIDGLIMIMKNELKLNPFEKALFVFCNKQMNRIKILHFDEGFWRYYYRLENGILKWPKTREEAIKAEKKELIWLLKGYEIRTKSKIKSVKEENSF
>NZ_CP033249.1|WP_134787688.1|316771_317476_+|transposase
MEDKNFDELDDKTKVIISKMEKAIKEKDSEIKNKNEEIEDLKNQIALLKGQILNKNSKIFGQSSEQANEDQLSFFNEAEKDSDSKISEPDLETITYARKKAVSHNGKKDNTANLKRVVIEHKLDNSKKICDKCGTQLSFIGTQKKELLKFKPAEIYIEEHITEVWACKKCEAEADKANIISAATPKTLLHKSMASNELAAHVITMKYLHSMPLTRMETYFHMMDVRLSKQTLSN
>NZ_CP033249.1|WP_052661670.1|317518_317734_+|transposase
MKHNLLKSSYVHAYEMPIKVIDSKGKESKSKHYMWVYVSDTEDSSIILYDYQKTRSSSCPTKFLEGFSGYL
>NZ_CP033249.1|WP_080776183.1|317770_317905_+|hypothetical-protein
MKRLYCLAHIRRKFFDIVTELHGDALKHSRAIIGFNYCEKLYIL
>NZ_CP033249.1|WP_002582698.1|318818_319571_-|DeoR/GlpR-transcriptional-regulator
MLKEERHRSIVNLLQEKGIIKVKDITNLMNVTEMTVRRDLQELENKGVLQRIHGGAQLSNSLILTELSHYEKQNINIDSKKDIARKIANFINNGDLIFLGIGTTIELVYEFINVDYLKIVTNSLHIFNKFINNPKYELILVGGSYRNRTGAFVGAIANDVLSKLKINKAFIGVNGIYDNNISNSNEDEGTIQSIVLNNSSEKYIIADSSKLNKYDFYQFYNLKDVTALITDNKINDENLSRYSKYTKIIF
>NZ_CP033249.1|WP_002582700.1|321406_321718_+|PTS-lactose/cellobiose-transporter-subunit-IIA
MSVSKQDLEQIAFEIVAYSGDARSKLLQAVKEAKNKNFEVCRKLIEDAKECLASAHKSQTLFITSEAQGDNIEISFLTVHAQDHLMTTILLKDIIDSLLDIYI
>NZ_CP033249.1|WP_035779546.1|322093_323248_+|exo-alpha-sialidase
MLVGTSSNTIFAKEIEKNNEIPAVKVFNKENNIWNSKYFRIPSMQTLSDGSIIAFSDIRYNGPNDHGYIDIGCARSVDGGKTWGDYKIVMENDRKDSTYSRVMDSTTVVTNTGRIILLAGSWNKDGNWAMTTSTLREDWSVQMVYSDDNGETWSKKVDLTTNSSKIKNQRSNTIGWLCGVGSGIVMDDGTIVMPAQIALKENNVNNYYSTIIYSKDNGETWTMGNKVPDLKTSENMVIELDGALIMSSRNDSTGYRSAYISHDLGETWKVYEPLNTKISTGKGSGCQGSFIKVTNSNGHRIGLISAPKNTKGGYIRDNITVYMIDFDDLSKGIKELGIPYPKDGNNLGGGYSCLSFKNGHLGIAYEADGSIEYKDITSYYLSIN
>NZ_CP033249.1|WP_045145014.1|323605_323845_+|hypothetical-protein
MDIELKFEKCNETKKVGFICKSRFCTSCGKIYVDNWIESMLSKLINIRYRYVVFTITKELRIYFGKDRSKLKLLPLKLS
>NZ_CP033249.1|WP_002582703.1|323861_324020_+|hypothetical-protein
MRGLNKSEEFIPEIITVIHMFGRNLNWNPHVHMILTEGGTRKKTELRHIKYI

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Crispr_ID: NZ_CP033249_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033249_3

2119714-2119797

Orphan

Consensus_repeat	Method
TCCATATTCATTTAGATAATACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033249_3

>merge|NZ_CP033249|3|2119714-2119797|CRISPRCasFinder
TCCATATTCATTTAGATAATACCATGAATTATTACTATAAACCCATCCTCTTTGCATTATTCCATCTTCATTTAGATAATACCA

>NZ_CP033249|3|2|2119714-2119797|CRISPRCasFinder
TCCATATTCATTTAGATAATACCA	TGAATTATTACTATAAACCCATCCTCTTTGCATTAT
TCCATCTTCATTTAGATAATACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033249.1\|WP_153739340.1\|2125506_2127543_-\|penicillin-binding-transpeptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223839
NZ_CP033249.1\|WP_153739339.1\|2121959_2125187_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP033249.1\|WP_002580018.1\|2129527_2130424_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP033249.1\|WP_024040140.1\|2107460_2108510_-\|M42-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349907
NZ_CP033249.1\|WP_002580029.1\|2114355_2115276_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP033249.1\|WP_003411911.1\|2115320_2116247_-\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132882
NZ_CP033249.1\|WP_003427738.1\|2132922_2134302_-\|Trk-system-potassium-transporter-TrkA	unknown	unknown	gnl\|CDD\|236541
NZ_CP033249.1\|WP_153739336.1\|2117811_2119209_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|341130
NZ_CP033249.1\|WP_046057739.1\|2130592_2131309_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP033249.1\|WP_153739333.1\|2110384_2111437_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235440
NZ_CP033249.1\|WP_153739342.1\|2131484_2132933_-\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223246
NZ_CP033249.1\|WP_003427727.1\|2127703_2127967_-\|late-competence-development-ComFB-family-protein	unknown	unknown	gnl\|CDD\|378482
NZ_CP033249.1\|WP_153739341.1\|2128122_2129439_-\|polynucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|237339
NZ_CP033249.1\|WP_002580031.1\|2111539_2113207_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|235154
NZ_CP033249.1\|WP_153739338.1\|2120519_2121890_+\|iron-hydrogenase	unknown	unknown	gnl\|CDD\|274983
NZ_CP033249.1\|WP_002580027.1\|2116384_2116882_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224248
NZ_CP033249.1\|WP_153739335.1\|2117145_2117748_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|197609
NZ_CP033249.1\|WP_153739334.1\|2113583_2114195_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224882
NZ_CP033249.1\|WP_003411879.1\|2108699_2110232_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_002580014.1\|2134573_2135158_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225023

Protein	Function_ID	Function_description	E-value
NZ_CP033249.1\|WP_153739340.1\|2125506_2127543_-\|penicillin-binding-transpeptidase-domain-containing-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	5.47722e-114
NZ_CP033249.1\|WP_153739339.1\|2121959_2125187_-\|histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.62862e-49
NZ_CP033249.1\|WP_002580018.1\|2129527_2130424_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	7.6785e-65
NZ_CP033249.1\|WP_024040140.1\|2107460_2108510_-\|M42-family-metallopeptidase	gnl\|CDD\|349907	cd05657, M42_glucanase_like, M42 Peptidase, endoglucanase-like subfamily. Peptidase M42 family, glucanase (endo-1,4-beta-glucanase or endoglucanase)-like subfamily. Proteins in this subfamily are co-catalytic metallopeptidases, found in archaea and bacteria. They show similarity to cellulase and endo-1,4-beta-glucanase (endoglucanase) which typically bind two zinc or cobalt atoms. Some of the enzymes exhibit typical aminopeptidase specificity, whereas others are also capable of N-terminal deblocking activity, i.e. hydrolyzing acylated N-terminal residues. Many of these enzymes are assembled either as tetrahedral dodecamers or as octahedral tetracosameric structures, with the active site located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers.	2.89442e-153
NZ_CP033249.1\|WP_002580029.1\|2114355_2115276_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.36116e-15
NZ_CP033249.1\|WP_003411911.1\|2115320_2116247_-\|LD-carboxypeptidase	gnl\|CDD\|132882	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment of preformed D-Ala-D-Ala dipeptides. Some enzymes possessing LD-carboxypeptidase activity also act as LD-transpeptidase by replacing the terminal D-Ala with another D-amino acid. MccF contributes to self-immunity towards microcin C7 (MccC7), a ribosomally encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. Its possible biological role is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	1.61632e-119
NZ_CP033249.1\|WP_003427738.1\|2132922_2134302_-\|Trk-system-potassium-transporter-TrkA	gnl\|CDD\|236541	PRK09496, trkA, Trk system potassium transporter TrkA.	2.32061e-170
NZ_CP033249.1\|WP_153739336.1\|2117811_2119209_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	4.38815e-25
NZ_CP033249.1\|WP_046057739.1\|2130592_2131309_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	7.53256e-95
NZ_CP033249.1\|WP_153739333.1\|2110384_2111437_-\|histidinol-phosphate-transaminase	gnl\|CDD\|235440	PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional.	0
NZ_CP033249.1\|WP_153739342.1\|2131484_2132933_-\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|223246	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	2.70728e-114
NZ_CP033249.1\|WP_003427727.1\|2127703_2127967_-\|late-competence-development-ComFB-family-protein	gnl\|CDD\|378482	pfam10719, ComFB, Late competence development protein ComFB. This family is conserved in bacteria. Some members, with three conserved cysteines, are annotated as late competence development protein ComFB.	2.66768e-22
NZ_CP033249.1\|WP_153739341.1\|2128122_2129439_-\|polynucleotide-adenylyltransferase	gnl\|CDD\|237339	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional.	4.81342e-94
NZ_CP033249.1\|WP_002580031.1\|2111539_2113207_-\|2-isopropylmalate-synthase	gnl\|CDD\|235154	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated.	0
NZ_CP033249.1\|WP_153739338.1\|2120519_2121890_+\|iron-hydrogenase	gnl\|CDD\|274983	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3. See for descriptions of different groups.	2.54508e-112
NZ_CP033249.1\|WP_002580027.1\|2116384_2116882_-\|hypothetical-protein	gnl\|CDD\|224248	COG1329, COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription].	4.54629e-28
NZ_CP033249.1\|WP_153739335.1\|2117145_2117748_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|197609	smart00257, LysM, Lysin motif.	0.000164218
NZ_CP033249.1\|WP_153739334.1\|2113583_2114195_+\|hypothetical-protein	gnl\|CDD\|224882	COG1971, COG1971, Predicted membrane protein [Function unknown].	7.42919e-11
NZ_CP033249.1\|WP_003411879.1\|2108699_2110232_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.73004e-19
NZ_CP033249.1\|WP_002580014.1\|2134573_2135158_+\|hypothetical-protein	gnl\|CDD\|225023	COG2112, COG2112, Predicted Ser/Thr protein kinase [Signal transduction mechanisms].	7.13675e-06

>NZ_CP033249.1|WP_153739336.1|2117811_2119209_-|L,D-transpeptidase-family-protein
MNEFMYEKSTKISCILLIVLFLIYFLGAFYFKTHFFFKTSVNGIDISFKTVDEAKDIVYNELSDFKVVLKDDSNEDKIESKDINLEYNGDKKIEEIKEKQSFFKWASALIDNKQYENLDIFTYDESMLEEKVKDLNFFKNLDVIEPKNPQFQYTDGKYIVLEEVKGNKLNYEKTVKAIKSAIEHGNKVVDLNTTGCYERPKYTRDSEKVKEVKDIIDKYVYSKIVYSFDELMETVDGSIINKWIDIDDDMNPSINEKKVKEYIDSLCEKYNTVGKERKFDSSIGKTVIVKGGYYGWKINSNEEVKALIENIKHGQSVFKEPIYSQKGLSRSDDDIGDTYVEVNITRQHLWFYKNGKLLTQGDIVTGCQSKNTPTAEGVYGLNYKQKDATLKGDGYSSKVSYWMPFNGNIGLHDARWRSSFGGNIYKTNGTHGCVNMPQYLAKIIFENIESNTPIICYSEDTKNNN
>NZ_CP033249.1|WP_153739335.1|2117145_2117748_+|LysM-peptidoglycan-binding-domain-containing-protein
MKKYYYLFLFTALISILLLSCQFIPSLKSNKSISPNNNSFDIHSNDANQNSDSTNNYENSNNNSDDFVIPCSNAVHITIREFINNQQCSRYLVKENETLNDILIRYNSTCAPNASLKLIKELNNITSTNDVKAGTTLKIPETTMKNGSLYTISQGDTWSKICEKYYPVYDIDSIMKLLIFINDYKNDILPLGDTIFLPKI
>NZ_CP033249.1|WP_002580027.1|2116384_2116882_-|hypothetical-protein
MFEFNIGDKVVYPNQGVGVIDLIEEKEFKGKKEKYYKIHLINNTMKLSLPLSRVKSANMRHISDSKTLDSKLNNIKYYVKEVDKLAKTNYKERNEIYSTKVKSGTLEDLLEIISNLTELKTIHDLNSMEKTILRNTKRILIDEIAQSKKISLDEAGYLLDIFMNS
>NZ_CP033249.1|WP_003411911.1|2115320_2116247_-|LD-carboxypeptidase
MIRPKPLKKGDTIGIIGTCSPPKKERIDPAIKWIKSLGLEVVIGRSVNENHGYLCGEDKVRADDLNYMFHNKDIKGIFIVRGGYGAARILNMIDYDNIKKNPKILAGYSDVTALHIAINQKCKMITFHTPMPCTEFYTDIDDYTVESFKDSIFKINYTKKVVNPDKCKSFEGLVKGNACGRITGGNLSIIASLMGTPYEINTKNKILFLEDIDESPYKIDRMLTQLRLANKFKDAAGIILGSWTGCDAKDTSRSLSLNEVFNEIIIPEKRPTIMNIACGHTLPTMSIPLGSNISINADSLEILNIDTD
>NZ_CP033249.1|WP_002580029.1|2114355_2115276_+|DMT-family-transporter
MNNYKGIIYAILSSIAFGIMPIFAKIAYKNGSNPTSSLLFRFLISGLILLLYLNFKKVSIKISVKQFLLLFFIGMFGYTITTITLFVSYNYLDSGLATALHYIYPALVCIFSFILYKENITKEKIFSLVLSIIGVYSLIAFESKTLNILGILLALFSGLAYALNVISLSFKSIKSIDNRVVTMYICFGASLGMIIYGAFTESLTFTINLEMMISYLGLSIISTIASMLFLLKAIKLIGSTSASILATFEAVVSIIMGIIFLNEKLTFALILGTSLIIISTTILAREKSPKPCDQYNKLSNAIDINH
>NZ_CP033249.1|WP_153739334.1|2113583_2114195_+|hypothetical-protein
MNFLSALLLSTAINIDTLKISFSSKTDSSVPLNLKILFASIFTTFITFLAFCFGKIIDIYFTHSLSNIFGSVLLGFVGVYYLIEHIRIQKDNDGYDTSFYVNNFKKHKNLIELNNPYIYSDSFKNLFNISIALSLNNILPSIAGSLTNINLPLTILFNFLICIFFYIAGNFIYNKKFIKYIKTNHYLITSILLIILSVFESFH
>NZ_CP033249.1|WP_002580031.1|2111539_2113207_-|2-isopropylmalate-synthase
MLNYKKYKRFETIKLKDRTWPDNEITKAPIWCSVDLRDGNQALINPMTVEEKIEFFNLLVKLGFKEIEIGFPSASQIEYDFLRRLVDENLIPDDVMVQVLTQARPHLIKRTFESLRNVKKAIVHIYNSTSVLQRDVVFNMSKEEIKEIAVEGTKLVKEYAKDFEGEILLEYSPESFTGTEVDYALDVCEAVMDTWEASKDNKVIINLPATVEMDTPNVFADQIEWMCRNFKDRERVILSVHPHNDRGTGVADSELALLAGADRIEGTLFGNGERTGNVDVLNIAYNMFSHGVNPQLDIENINEIIEVYERCVKIPVHVRHPYAGNLVFTAFSGSHQDAINKGMKKYNERHGNIWEVPYLPIDPSDLGREYEALVRINSQSGKGGVAFVMDHCYGFKLPKTMQKEFADIIQKMSEVKGEISPSEVMDAFTKEYLDLDVPFKLLKCTFTDISEMDGSEDTKADVIVVYNGEQRVLEGIGNGPIDSFKKALAESSLINVKIIDYTEHAMSTGSEAKAASYVYMERLDNKKKTFGVGTDSNITRASIKSMMSAINRLYK
>NZ_CP033249.1|WP_153739333.1|2110384_2111437_-|histidinol-phosphate-transaminase
MSIYWNDHVKTLEPYVPGEQPKDKKYIKLNTNENPYGPSPKVIDAIKNAVCDDLKLYPDPTCSNLSMEIAKYYHINDDEIFIGNGSDEILAFVFMTFFQKDRKVLFPDISYTFYNVYAEMFNVNYEHIKLDDKFNIPLEGFYKDNGGIIFPNPNAPTGKYIETNKIIEVLEKNKNSVVIVDEAYIDFGGKSMVEYIETYPNLLVIQTFSKSRSLAGLRVGFAIGNSQLIEGLNRVKNSFNSYTIDRLALIGAAEAIKDKNYFDVTTKKIIRTREDTVKKLENLNFEILDSKANFIFVKHKEFSGKYLYEKLKENGVLVRHFNKERIEDYLRITIGTDEEMSLLIANLKKY
>NZ_CP033249.1|WP_003411879.1|2108699_2110232_-|cell-wall-binding-protein
MTYKKNRLLALGIITIGLSFISTNANAEIKKTEVYEETMQNEKLLANDTSIKEKTQSDYKIKRNWLTEEVASQLNKDFKDLTTEDFEHIIKIDFRYKKIDDTIPDEIALLKNLQYLDLNYCRLYGDIPEEIANMTNLTHLDLGDNKLGKLPESLEKKIIDGDYAYCDVEGNQLRLEKGWHLLKGNWTYIDRYGERLTGVQTIDKVTYDFGEQGFIKEGWEQVDNIWHYYDRVSGMIKNDWKLINSKWYYFNADGIMVTGLQNIQGTKFCFAPSGEMLTGFQNIGGYNYSFCESGGMQYGLVNVNGKQYYFDETTGIMATNTEKVINGKKYIFAADGSGSIKSNVWIDNYTYIQANGQTVNTYYDYSHSNTNYQLFKYMTDLGNQISVDRTAVALHGGITSNNCVYFASEALRRVGVGIPTSTCNTYELENELKYMGFVPCYDLSQLKPGDIVFTNNYSHVYIFMCWDTDGYAYIVDNQSYNFDNKVLHKRQVYQDTSITDRATHFYYYPN
>NZ_CP033249.1|WP_024040140.1|2107460_2108510_-|M42-family-metallopeptidase
MNINVNKEYLLNTLKEILQENSPTGFCFEIIDKIETIVSGFGYSFERNNKGCGIITIEGKENSKTIGLSAHVDTLGCMVRSITESGKLKFTLLGGPLVPTLDGEYCNIRTREGKIYSGTFLSTSPAAHVFEDAKSKKRDPENMEIRIDEVVSSKKDVIDLGIRPGDFVFIDPKPVITESGFVKSRFIDDKGSVACLLTILEMFKKNNVIPDYTTKIIISTYEEVGHGASSIPKDITEMISVDMGCIGDDLSCSEYDVSICAKDSGGPYDYNMVTDLVNLAEANKLNYAVDIYPFYGSDVGAALRGGNDIRGALIGPGVSASHGMERTHYKALENTVKLIYHYLTKETLR
>NZ_CP033249.1|WP_153739338.1|2120519_2121890_+|iron-hydrogenase
MNSKYTDLFHELIQAYYDGNFDETLSRIMVCHESSPQETFKIITSLCGVNIEFDNNYIYNLKKAITMYSVNKRIVEKLECSGVNCIKSKDDKFTCEAACPFNAIKYDTTNKTTYISKDICINCGICVDSCKGGRILDKVEFIPVMNLIKENKTVIAAVAPAINGQFGDNVTMDMLREAFIKIGFSDMIEVAFAADILSIKEACEFDKHVNKDGDLMITSCCCPMWVGMLKKVYTSLVKDLSPSISPMIAAGRIIKKINPDAKVVFIGPCIAKKAEAKENDLKDVIDFVLTFAELDEIFKALKIDLSSLKGIPSKDYTSRGGRMYARSGGVSTAVSDIIEELYPDKFKSFKSSTASGVKECKEILEKALNKELDSNFIEGMGCKGGCVGGPKTLIPLEKGKQQVDNFAFDSPIKVPLHSESLDNILKEIGINSIDDFKDKQKMSLFERDFNSNNVKK
>NZ_CP033249.1|WP_153739339.1|2121959_2125187_-|histidine-kinase
MIIINKLKNTILKISVIFFILNLFTSISVVKAEAYSNIVFKNITIEDGLAQATVECMIQDSRGYMWFGTNDGLSRYNGHEFEVYRNEIGVDNSIVNNYIVCMNEDRDGNLWIGTIDGASKINLSTNEITNYKNSSGLSNNNITEILVTKDGEILLATIDGLNIYDKTNDRFTRIFNNEYLKDQEIYSLDEDINGDIWLGSSKNLTKINLKNNTCEDFSDINKEYEKINDCAYKVLCDDKYIWVGTVSNGLYKINIETSEIETINISNSKISSNNIHTIMKDKNGIMWIGTDSGLVKYDSKNDEYNTYVNKAYDKYSLVDDYVYSVIQDRSGLIWVGTYAGVSMFEPENKIEHYKVDPLSHSSINENLIHGIYEDDDGLIWIGTNTKGVNILDRKNENIYDISEFTNGTALSSNSINDISGHANKIFIATNNGLNIYDKNTRKISVYNEKQGLNAKKIRNITYDDSGVLWIGTTNGINILNLETDEITDLNYILDKYSLDDRYSECIFKDSEGFYWLGSFLNGGLIKIDPYNNTAIQYKYEGKDGDLSNNTVRTIIEDDEKNIWVGTSGGLNKLDKETGKFKTYTTSDGLANNNIYGIVIDGSGNLWMSTNLGISKLDREKDRFFNLNITDGLQSNEFNGHSYGKLKSGELIFGGINGLNIFDPDEILNNMYIPRVEFDRFRVNGRTIDTLQDAKLNYNENTIGIKFFLPDYKNIKNTQYYYSLEGAGNDWSLVNTNELVLSNLGSGTYIFRVKARNSSGIFSEESSFKFTIKPPFWRSAEFILIYILIGVSLVVLIVKSKNTKMRLLDDMVSKRTRELSDEMEKNTELLNKIINLEKRKNAYLVNISHDLRTPLNVLSSIHQLINQLNKSESGIEREKLDYYMNIFGKNVDRLLKLINDLIDSSKIEHGNYHINIGKHNIVYIVEDTALSLKDYVESKNIELIIDPDVEECFIECDSNEIERCIINLVNNAAKFTDEGGRILVSVVELENEVKIMVSDTGIGIDEKHLETVFDRFNQVIDSNKETKGGSGLGLTITKLIVGLHNGRIFAESEINVGSKFTIILPKKQLKEKVEKI
>NZ_CP033249.1|WP_153739340.1|2125506_2127543_-|penicillin-binding-transpeptidase-domain-containing-protein
MEKKKNLYMLVGVLIVVVPLVICTIIYIGYSYTHKPENKWQEYTELLQNKEYDKMYDLIDSTAQAKISREDFVARNKNIYEGIEAKDINITIKSISKEDNDTLINYNTKMDTIAGELEFDNSVKIASELGKGHTIKWTSKNIFPDLGENDKVRVKTLKGRRGNITDRNGQLIATDSYLSNVGVVPGKLGDNKEESIAKIANILKCSTETINKALSANYITDDMFVPIKDIPYGDAKVVDLLKVPGVMIKEKDSRVYPLGRDTAHITGYVQSINGDELEQNKDKDYTENSLIGKAGLEKMYEDFLRGIDGAEIYIQNSEGEKKSVVLSKDARNGEDLKLTIDINVQKKVNEELGSDKGCAVVMNPENGEVLALSSTPSYDPNDFILGMSQEKWNTLNNNEDKPLFNRFQATSVPGSALKPIIAAIGVDSGSVKPDQVRKISGLAWQKDESFGNYYVTRTSNIEEVNLESALVYSDNIYFAQIAMDMGSNLIEEKLKSFGFGEKIPFEFALYNSQYSNDGKIKEGAQLADTGYGQGEVMVNPVHLTSMYSMFLNQGNIIEPHLVIDNKNNNIVWKKSVVSKESAQIVLNDLIQIVENPAGTGHEAYNSKLKIAGKTGTAEIKNSQTDTSGTELGWFVGMTTEGDNKVLVTMMIEDVKGRGGSHYVVPKVKDVIESVSLKQ
>NZ_CP033249.1|WP_003427727.1|2127703_2127967_-|late-competence-development-ComFB-family-protein
MKKITNCMEISVKECLDKLIEESNGCKCEKCRYDMMAIALNNLKPYYVTTHLGEVITKIKNMEQQSEANIVVEVTKAIKKVHMSPKH
>NZ_CP033249.1|WP_153739341.1|2128122_2129439_-|polynucleotide-adenylyltransferase
MNYKLKIPSDVQYIINVLIENGYEGYMVGGCVRDLLINREPNDYDITTNAKPEVVARLFDKVILTGLKHGTVTVIINKVQYEVTTYREDGEYKDSRHPENVKFVTDIKNDLSRRDFTINAMAYNKEKGLIDYFDGLSDLKNKLIRTVGNPEKRFTEDSLRMLRAVRFAVQLDFKIEESIIQSIKILNNNLEFISKERIREEFNKIILKDPNGLKLLHECSILKYIADDLDKAYDYYINDKIKCYNLYEHLILSSCNIKKDLSLRLTMLFHDLGKLKDWNNKLEKVDNIFIESACIAEKILRSLKYDNGTIKKVKTLITYMHSDLEDKVSIKKLLNIIDVELFEDLIKVKKAHIMSENIEEVKFLNIEKLYCDILEKNECFRIRDMKINGEDIIKIGVKKGKDVGTMLNYLLCKVIEDNNLNYKKKLLELAEDKLSMNI
>NZ_CP033249.1|WP_002580018.1|2129527_2130424_-|MurR/RpiR-family-transcriptional-regulator
MEELNNENSKDLMRLIQGKFIRLSKGQKLIAEYILKNYDKAAFMTAAKLGNAVGVSESTVVRFAIEVGFSGYPKLQKALQELIKNKLTTVQRLELRNDYFSDGDALKGVLKADMENIRATLEKINQNTFQDVVQHIFEAKRIYIIGLRSSTALAEFLGFYLNIILQNVKVVSYGISDVFEQMINVGEGDLVIGIGFPRYAAKTIDALEFSQDRGAKVVALTDSLLSPLATKADYTLIAQSNMASFVDSLVAPLSVINALIIAVGMREKENISNVFSNLELIWKNYNVYSINNKNVADD
>NZ_CP033249.1|WP_046057739.1|2130592_2131309_-|rRNA-pseudouridine-synthase
MEERLQKYMASCGIASRRKCEELILLGKVKVNGNIIEELGFKVNPLEDIVEYDGRVITKEERKVYIMLNKPEDVITSVKDEKDRKTVIDIVKVNERIFPIGRLDYDSSGLILLTNDGELYNKIIHPRVELDKKYVAVVKGEVSLDDKEKFESGIDIGGYITAPAKLKMLEYSHRKDLSTIEVCIHEGKNRQIRKMCSAINHEVMSLKRVSIGNIRLGQLKKGEYRYLNDEEMKYLMSL
>NZ_CP033249.1|WP_153739342.1|2131484_2132933_-|TrkH-family-potassium-uptake-protein
MNYKAVLSILGNVVKYMVALLFVPLLIALYYGEGDAKSFLLTILIGAPIGFILSNIKAEKKAIYAKEGFLIVGFAWIIISAIGALPFVISGTIPSFIDAFFETVSGFTTTGATILTAIEGLPKGILFWRSFTHWIGGMGFLIFMLALIPSLGSNSIHLLKAESPGPSPGKIVPKIKETAKILYLIYFALTLIEGILLMCAGMNLYDAVIHAMGTAGTGGFSNMNASIAAFNSPAIEWIITIFMLIFGINFALYFQILKGNFKGFFKNEELRYYLLIIVSAFILITVNIISLNGGDIILSIRQSAFQVSSIVTSTGFATVDFNFWPTLSKLIIVMLMFVGAMAGSTGGGIKTVRIVIMLKAIKREINKIIHPKRVNSVKIDGKTVDEDIIHGVFLFIGAYIIISLIAIFIISFDNFDVVTTVTSVITTMSNIGPGLEVVGPAGNFAAFSPLSKLVLSFCMLAGRLEIYPMLIMFSPSIWRKNH
>NZ_CP033249.1|WP_003427738.1|2132922_2134302_-|Trk-system-potassium-transporter-TrkA
MMNIIIVGAGKVGYAIAKNLSTGNDNVTIIDNKMTALERINNNLDVMCVKGNCTSLKVLNEAGIEEADLLISVTNSDELNMLCSLAGKKLGAKHTVARVRNPGYDEDITLLTEAVGIDLVINPEKAAAGEISKLIKYPSVCSIDNFANGRVNMVGFDITEDTGLENKKISELGYLRGNVLFCGIERNGEMIVPKGDYIFEKADHVYVIGEHKDIQEIFKKFGKYRRKVRSSMIIGGGRIGYYLTKIVSEAGVHCKLIENDFNKCEELAELIPNSVIINGDGLDQELLLSESLEEADSFITLTGRDEDNLIASLFAAKNGVKNIITKVTRDNYNEIAKTIGINSTINPKSVTANKIIKYVRTLKNRKKCPIENVYKICNEKAEAIEFIVKENAQYINIKIKNLNFKYDSLIATIVRENKTIIPSGDDILKPGDRVVVVTKDTNLLSLSGIFVGGGKNNEL
>NZ_CP033249.1|WP_002580014.1|2134573_2135158_+|hypothetical-protein
MRYILDIKECEFLGKGHEGSVYLTPEGYALKIFLKKKKAKEEVSILELVKTSKFFPKVIFIAGNMILREYVDGVTLFEHLKKNGISYKLSCEIIDLIEDFKKMKFKRLNIRNAHIFVDKNENIKVIDPRKIFTKNTPYPKDIIKILVHLNIFDDFLKNVAQYRSDLLQYYVDAYNYYVYMSKKSMHIDMHAEIC

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Crispr_ID: NZ_CP033249_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033249_4

3320856-3320941

Orphan

Consensus_repeat	Method
TCTTTCCCAAGATAATATTTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033249_4

>merge|NZ_CP033249|4|3320856-3320941|CRISPRCasFinder
TCTTTCCCAAGATAATATTTAAATATTAATCTAAAAATTCATTATTATTCTTCTTAGATTATTTCTTTCCCAAGATAATATTTAAA

>NZ_CP033249|4|3|3320856-3320941|CRISPRCasFinder
TCTTTCCCAAGATAATATTTAAA	TATTAATCTAAAAATTCATTATTATTCTTCTTAGATTATT
TCTTTCCCAAGATAATATTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033249.1\|WP_103673335.1\|3318152_3318548_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033249.1\|WP_043852472.1\|3330158_3331652_+\|leucine-rich-repeat-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_113886063.1\|3309260_3312401_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033249.1\|WP_003424018.1\|3314506_3315841_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP033249.1\|WP_153739546.1\|3318997_3320758_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|237053
NZ_CP033249.1\|WP_033127485.1\|3320943_3322527_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|270327
NZ_CP033249.1\|WP_033127508.1\|3331839_3333078_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP033249.1\|WP_002579051.1\|3325572_3325911_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP033249.1\|WP_043852473.1\|3327593_3327920_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033249.1\|WP_003424016.1\|3317815_3318151_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033249.1\|WP_003424020.1\|3312570_3313398_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP033249.1\|WP_035777619.1\|3313397_3314297_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP033249.1\|WP_003424017.1\|3316307_3317735_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|181973
NZ_CP033249.1\|WP_003424001.1\|3323797_3324427_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223564
NZ_CP033249.1\|WP_153739545.1\|3307899_3309243_-\|glucosylceramidase	unknown	unknown	gnl\|CDD\|307945
NZ_CP033249.1\|WP_153739548.1\|3328304_3329717_-\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|225343
NZ_CP033249.1\|WP_003424004.1\|3322526_3323654_-\|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_CP033249.1\|WP_003424023.1\|3306634_3307648_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP033249.1\|WP_153739547.1\|3325955_3327533_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP033249.1\|WP_002579052.1\|3324613_3325336_-\|Spo0E-family-sporulation-regulatory-protein-aspartic-acid-phosphatase	unknown	unknown	gnl\|CDD\|379605

Protein	Function_ID	Function_description	E-value
NZ_CP033249.1\|WP_043852472.1\|3330158_3331652_+\|leucine-rich-repeat-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.91011e-37
NZ_CP033249.1\|WP_003424018.1\|3314506_3315841_-\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.12522e-21
NZ_CP033249.1\|WP_153739546.1\|3318997_3320758_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|237053	PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP033249.1\|WP_033127485.1\|3320943_3322527_-\|ABC-transporter-permease-subunit	gnl\|CDD\|270327	cd13609, PBP2_Opu_like_1, Substrate-binding domain of putative ABC-type osmoprotectant uptake system; the type 2 periplasmic-binding protein fold. This group includes the periplasmic substrate-binding component of a putative ABC transport system that is predicted to be involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. The relative substrate preference of this group is not known. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.08431e-156
NZ_CP033249.1\|WP_033127508.1\|3331839_3333078_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.00962e-127
NZ_CP033249.1\|WP_002579051.1\|3325572_3325911_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	1.17872e-38
NZ_CP033249.1\|WP_003424001.1\|3323797_3324427_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|223564	COG0490, COG0490, Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism].	6.48455e-21
NZ_CP033249.1\|WP_003424020.1\|3312570_3313398_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	8.66325e-65
NZ_CP033249.1\|WP_035777619.1\|3313397_3314297_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	8.30071e-70
NZ_CP033249.1\|WP_003424017.1\|3316307_3317735_-\|6-phospho-beta-glucosidase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_CP033249.1\|WP_153739545.1\|3307899_3309243_-\|glucosylceramidase	gnl\|CDD\|307945	pfam02055, Glyco_hydro_30, Glycosyl hydrolase family 30 TIM-barrel domain.	1.69032e-86
NZ_CP033249.1\|WP_153739548.1\|3328304_3329717_-\|family-1-glycosylhydrolase	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP033249.1\|WP_003424004.1\|3322526_3323654_-\|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	6.21438e-146
NZ_CP033249.1\|WP_003424023.1\|3306634_3307648_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.48781e-105
NZ_CP033249.1\|WP_153739547.1\|3325955_3327533_-\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	6.38037e-117
NZ_CP033249.1\|WP_002579052.1\|3324613_3325336_-\|Spo0E-family-sporulation-regulatory-protein-aspartic-acid-phosphatase	gnl\|CDD\|379605	pfam14417, MEDS, MEDS: MEthanogen/methylotroph, DcmR Sensory domain. MEDS is prototyped by DcmR and is likely to function with the PocR domain in certain organisms in sensing hydrocarbon derivatives. The MEDS domain occurs fused to Histidine Kinase and as stand-alone version. Sequence analysis shows that it is a catalytically inactive version of the P-loop NTPase domain of the RecA superfamily.	1.42167e-22

>NZ_CP033249.1|WP_153739546.1|3318997_3320758_+|1-deoxy-D-xylulose-5-phosphate-synthase
MYLEKINSPEDVKNLSINEMNELSSEIRQVLLKKLSEHGGHIGPNLGIVELTVALHHVFNSPQDKIVYDVSHQSYIHKMLTGRREAFINSEKYGDVSGYTNPHESEHDFFNIGHTSTSVSLACGLAKARDLKDEKDNIIAIIGDGSLSGGEAYEGLNNAAEAGTNMIIIVNDNDMSIAENHGGLYKNLKELRDTNGKCECNFFKSMGLDYYYVNDGHDFDQLISVFNKVKDTDHPVVIHIHTIKGKGFELAETNKEQWHWGMPFVLETGDSKFPMGDAEDYGDLTAKYLLNEMKQDPTVAVITSGTPGVLGFSPERRAEAGRQFIDVGIAEEHAVALASGMAANGGKPVYGVYSTFLQRTYDQISQDLCINNNPAVILVTLASVYGMNDVTHLGLYDIGMMSNIPNLVYLAPTCKEEYFAMLKWSMNQQDHPVAIRIPAMGVINSGNEDNTDYSELNKYQVTKQGKDVAVIALGDFYQLGQSLVEKLSSENGIEATLINPKYITGLDEELLETLKKEHKLVITLEDGILEGGFGERIARYYGSSDVKVLNYGIKKEFLDRYVPDELMKKNRITPEQMSEDIMNILK
>NZ_CP033249.1|WP_103673335.1|3318152_3318548_-|hypothetical-protein
MNFIRGWGDETSMKSFLKSTLGFGIAAIILNTLWGVITSRIGLKGGWICGFILTGTLWYVNHYLGIVENKKESAFIDMGFAVAICSFSRDFLKNGLEGIVTSAPTFICVIIGGTIAGVVAGIIKRHQKQGE
>NZ_CP033249.1|WP_003424016.1|3317815_3318151_-|hypothetical-protein
MNSFGALTTIFGSAIFSFGVIMYWDKFVSLLGAFGGFIAAMLIPGTMWILNHGAENHLIKQSGSIWIDMAWAVGIGVLISSIMQGGSLRKSKWIMLSAMIGGLIGGFLINM
>NZ_CP033249.1|WP_003424017.1|3316307_3317735_-|6-phospho-beta-glucosidase
MAFNKDFLWGGAVAAHQLEGGWNEGGKGPSTADVMTAGAHGVPREITDGVIEGLNYPNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWSRIFPNGDELEPNEEGLKFYDDMFDELLKYNIEPVITLSHFEIPYGIVKNYGGWRNRKVIDMFVRYATAVMERYKDKVKYWMTFNEINNQKQTGVDIFPWTCSGIIYEEGDNREEIMYQAAHHELVASALVVKKGHEINPDFKIGCMVSFVPIYPYSCNPDDMMLQVEAMHDRYFFSDVHARGHYGAYAIKEWERKGYNIKMEPEDVQILKEGTVDYIGFSYYMSNAVKSDAQNTEDLLSGHSASVKNPYVKASDWGWQIDPVGLRYSLNTLYERYELPLFIVENGFGAIDVKEEDGSCNDDYRIEYLKAHIQEMEKAIEVDGVDLMGYTPWGCIDLVSFTTGEMKKRYGFIYVDKDNDGNGTLNRSKKKSFDWYKNVIATNGEEL
>NZ_CP033249.1|WP_003424018.1|3314506_3315841_-|extracellular-solute-binding-protein
MRLKKVLSLVVTGLLATSFIACGSSSSNSQTASGGSNKIVVWTLSDDLKQFAEHYQEENPGKEVEVTVIAPADYPTKVTTALRGKAETPDIIVGEPQMIPNFMEAGFFEDLSQEPYNAEQYKDKIVDYVYQAGKDETGKVRALSYQMTPGGITYRRDIAKAVWGNDDPAFIGEKFKDVTTITQTAKELKDKGYRIFADTGNLRWFVYGNDPQPWVKDNKLMMTDDRLAYVDAAVKLYQDKLVAFAPEWSAAWYQSMSAPIPVDTDGKELDQVDPNSEKTEVFSYALPTWGTLIIRDNAKDNIGKFGVTTGPNSYFSGGTFMGISSYSKNKEAAWDFLKYCTVTESTSDWWIEKSKGDVVSYIPSLESHKDMENEAFGGQKTYDFWLAESKKIDYSLVTKYDDQIGKFFGQAIESVQKGQMSKEDALKDFYKNVKTVYPEIEVPN
>NZ_CP033249.1|WP_035777619.1|3313397_3314297_-|sugar-ABC-transporter-permease
MGDINKWGYAFIFPFLVVFIVFSIYPIFKTLYLSFTNFTGFGQAEFVGIQNYTRVLKDGLFWGAFKNTLKIWSVNVILQFGLAFLLTIIFSDIKYKMKGLPIFRALFYLPNLIAATSVAFLFKALLDWQFGSLNQLLVKLGLITTKINWLGQPGTATIVVAVIGAWMWFGNAFIVLMAGVQGISKDYFEAATIDGAGRWTTFTKITLPLLKPILLYVAITSLIGGLQIFDIPFLITDGLGAPNGALNTVVMYLYNTAFKYNNIGYAAAIAYALFFIIAIFSAFTFKSMYGDSKKAKEGK
>NZ_CP033249.1|WP_003424020.1|3312570_3313398_-|carbohydrate-ABC-transporter-permease
MFTKIKKSIIYIGLILLSVICLGPFLIMMVNSTRSSQEIINSFSLIPGNSLQSNWKIMSDYFNIFSGLKNSLFISVCVTVLSGYFSALTAYGLAIYKFKGRNVVFTTILVLMMVPAQLGLLGFYDLINGLGLMDSYIPLIIPAIASPFTVFFLRQYIVSVLPSSIIEAARMDGASELSTFHRIGLPIMMPGIATMSIGTFIASWNNYLMPLVLLVSPKKFTLPVMMGSLSASKDITANMGATYVSVAVSVVPIMIAFCFFSKYIISSISAGGVKE
>NZ_CP033249.1|WP_113886063.1|3309260_3312401_-|hypothetical-protein
MKADKIVKVDYIDESKYYTIENYDKKLPFASFMAGVAGIHGIPMWSFYVNRGQAISSIGIRDKDNCIMEFFPANEAYKMVYTNGFRTFIKVIYENKEEVIEPFGVTTSDLIERTIKIKNNELKLIEINNEKNLKTEVTYFTIPNEDFAALSRKVEVTNLNDENIKVEILDGLTSVLPYGSKNIEYKEIGNTLRSWMEGYIIDGNTAIYKVRSSTGDSTKMDEVKNGYFYCAFNHSEKSIKPIVDPEKIFGFDTSLKEPVEFYENSISSLSKEDKCYNKVPCAFAGNTEELEPQKSIVIYSYIGYMNSIEKISTAQEKIINKEYFEEKCEEGNEIIDNTLKCVETESAYPLFDEYIKQCYMDNVLRGGYPLKIGGKIYYVYSRKHGDLERDYNFFSIEPNFYSQGNGNFRDVNQNRRMDNYIHPFVGTENIKLFNELIQLDGYNPLKISGKKLYVKDENKKEVLNLIDKDSSSLEEFLNKKFTVGDIYAELIKFDDYNDEDIEKLLNNIVALTEEDNEADFGEGFWIDHWTYNLDLIEEYLNIYPDKLKELLIEDKGYKFFNSPEYVLPREERYELDNEKVRQYVCLGKKGNVQPWVSDRNGNVYKVNLLTKLVMLAGTKFMSLDNMGFGIEMEGGKPGWNDAMNGLPGLLGSSFAETAELQRLLLFIRQNLNVVEGSLQVPLEFYTAMTELNGVLSDALDNKVTQFDYWNKVSNIKEVYRASTNYEVSGENKEIYVCELEDLLNKMIEKINIGIKDIKKLNDGKIPTFMYYDVVKYELNEKNQVKPLEFKVNFLPMFLEGAARYLKIVNNIEEKHEIYDTTINSDVYDKKLKMYKTSESLEAVSFEIGRARTFTPGWLERESVFMHMEFKYILELIKSGLYDEFFESIKSAMPPFMDPEVYGRSILENSSFIASSSNPDEHNHGRGFVARLSGTTVEMLNIWKLMMVGNKLFTYKDEVLTFELNPILSKDFFKDGIIKTTLLGSIKLTYINPENKNTFGEDRGIVNKLKIVDFDGNKYEFYGNKICGEIAAKIRDNQIKEIEAVIL
>NZ_CP033249.1|WP_153739545.1|3307899_3309243_-|glucosylceramidase
MKKYNVYETYKDGKEKLELKKLDDIALKSESNHNACIKVNTGNKFQKILGFGGALTESSSYAISKLDDDVRKKVLKSYYDKEEGIGYKFGRIHINSCDFSLENYTYVEENDLTLDTFTLERDEKYVLPLVREVKEISEGDLTILASPWSPPSYMKTNGEMNHGGKLKEECKQLWADYYVKYIEKMKEKDIDIWAVTVQNEPAAIQTWDSCEYTAEEERDFVKYYLGPTFHNNNLQDKKIIIWDHNRDIAYERAKVVLEDEEAAKYVYGTGLHWYVSEEFANVSKIHNEFPDKHLIFTEGCQEGGVHLGSWDTGERYGRNIIGDFNNYMEAWMDWNIALDETGGPNHVGNLCDSPVIIDTKEKNVIYNSSFYYIAHFSKFIKENAIRVESTVEGEKVYCLSCINEDNTICSVIMNESDDIKIVDLEIDGDKVSLQLKPHSIYTIKEVK
>NZ_CP033249.1|WP_003424023.1|3306634_3307648_-|LacI-family-transcriptional-regulator
MSTIYEIAKIAGVSPTTVSKVLNDYPDVSDKTRAKIKKILEEENFYPNSQAQNLSTKKTWTLGIVYFENLGVGLSHPFFSGVIEAFKNQADSHGYSLLFGSKNNRLGNDTFLEYFKYINVDGIAIICTDPSDKETLQLIDSDFPIVVIDMFSSNTSTVTSDSAQGCRLAINYLYNLGHRKIAHIEGISKEDNWPSSIRKEYYIRAMKDLNLDVPDEYIVDGVNFDVSGGYEAMKKLLELEEMPTAVFASCDKLAIGAIDAIKEAGLSVPEDISIIGFDDIELAKYVTPKLTTIRQDCTSVGKAAVDLLVEQINAKAKLKINKVIPVELIERESCRKI
>NZ_CP033249.1|WP_033127485.1|3320943_3322527_-|ABC-transporter-permease-subunit
MNDFFVNLYLKKSEVLSLLLEHIELTLLAVLIAVFIGVPLGIFITNYKKLSKIVIGFANLVQAIPSLAILGFLIPVVGIGSVPAIIMVVLYSMLPIIKNTYTGISNINPDMIEAAKGVGMTKTQILKIVKIPLAMPMIMAGIRISGVTAVGLMTIAAFVGAGGLGYLVFSGIQTVDNNLILFGAIPAAILALVIDWVTAKIEYAVMPNGIKKSDGTMKVKRGNKGTGKRNKIIALVTSLILIVILFFSNNPFQKSSNKIVIASKNFTEQIILGNMLEQLIEAKTDIDVETKLNLGGTQVAYSALKSGSVDLYVEYTGTAYVNLLDIKDGNTNPDEVYSKANELLKENEKVQFLKPLGFNNTYALAVRKDTAEKYNLKSISDLSGISQEFLMGPTIEFANREDGLLGLNKAYNLTFREVKPVDGGLRYTALMNNESDVIDAFTTDGLLDKFGLQVLEDDKNFFPPYYAAPLIRMDTLKEHPELEEVLNLLANKITDKTMRKLNYEVDVNGRDPKVVANEFLVSEGYIN
>NZ_CP033249.1|WP_003424004.1|3322526_3323654_-|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein
MIEFKNIKKSYKSKTILENFNLNIDNGKLVVLIGASGCGKTTLLKMINRLISITEGEILINGKNINNMDPIELRRGIGYVIQQTGLFPHMTVKENIEIIPKLMKKSESEIEQKTIELLNMVGLNPKEYLYRYPAELSGGQQQRVGVARAFAADAEIILMDEPFSALDPITRTELQEQLFNIQKEYNKTIVFVTHDMDEAINIADMICILKDGKIIQYDTPENILKNPENDYVEEFVGRNKIWAKPEFIKAEDVMINNPAIVSIKRNLLQAREIMRDKTVDSLLIVDKEGILLGYVTLSDIQKSDNKSILVGDIMRRSPEYVTEDTNLLDLLEKFTGLKRGYLPVCNKDGKLMGLVTRSTLISVLSSQYIDIGGDN
>NZ_CP033249.1|WP_003424001.1|3323797_3324427_+|GntR-family-transcriptional-regulator
MNNSSIPTYKKIALDIANKIQLNNILEGDILHGRSTLSSKYNVSPETIRRSMILLEDVEVVKTIKGKGILVLSREKAISFLNRNKSIDSIRSYKTEIDKLLNNRKEIENQLLKSIQGIIDYSSRFNEVNNIIPLEFVVPENCLYIGKTVGEIMFWQNTGATLIAVKRNDELLLSPGPYISLNPNDVLIVVGNDNIRNSVPQFLYPKNNL
>NZ_CP033249.1|WP_002579052.1|3324613_3325336_-|Spo0E-family-sporulation-regulatory-protein-aspartic-acid-phosphatase
MREICNNCKIKGRIKEYKEKLNKSIENRNGDLLDDEVVLLSQFLDNFVYKCVYCNKNIKDLSKLNLRDVFGTHTTLYYYGEQHLLVNLYFYINEGIKNNELIYISMEEDLYNKLLDFFRINNISTENIKFRNVKELILGHKKGGFNGLVETAMGILGSSNIEKYNGLRWIGQPSFAIKGTSENDFLEMEEDLNKFIKNMNVALLCVYDAYDYMHKGKIINKKVIEESFKTHSFVLNNYVS
>NZ_CP033249.1|WP_002579051.1|3325572_3325911_-|P-II-family-nitrogen-regulator
MKKLEIVINSEKLEDLKKILSDCNANGVMISNVMGYGNQKGYKTIYRGTEYSVNLLPKVKVETVVPADVAEKIIDKVLKEISTGNYGDGKIFIYDADDIVRIRTGERGKDAL
>NZ_CP033249.1|WP_153739547.1|3325955_3327533_-|ammonium-transporter
MKKSLKLLGIILFLGALALTFALAISPTSGSDPTGAAYIATTGNETITDVATTANKAYYGANYVWVMITGFMVFFFQCGFAMVETGFCRGKNAAHTMTMNFMVFLVGAIGYFLTGFAIQFGGSGGAAGLGTGGSALNAMLSIPGLGGILGYKGFMLSGNGIYDPGIFALFFFQMVFMDTTVTIPTGALAERVKYSAVIILSFFISMFLYPLFGNWVWGGGFLATLGQNFGLGHGVVDFAGSAVVHSMGGMIALSSAIVIGPRIGKFKKDGTARPFPGHDIPMAIIGTVILFFCWFSFNAGSTLNSSDFRLAVVATNTMIAGAIGGLVAMFYMWIKYGKPDPSMTANGALAGLVAITAPCAFVNGPCAFFIGGVAGYLVCISVAFVENKLKLDDPVGAISVHCVNGVWGVIALGLFADGAYGDGINGVAGGVRGLFYGDPSQLVAQLIAVAVLVIWGFGVSYIFLKVLDKVWGLRVKPEEELAGLDIPEMGVSAYPDIQLIKSPELDYYSADNIEIKQIKTFKEKV
>NZ_CP033249.1|WP_043852473.1|3327593_3327920_-|hypothetical-protein
MKFINSNDDSILSKKIAVYFLQCVSLMIVFLGMFFSIFSAINHISIKVLSVNISGIVFGVLVFYLGIKYYLSVCNLKEKLLKNKYKFSWSNFNFQKGRKISSFIKGKF
>NZ_CP033249.1|WP_153739548.1|3328304_3329717_-|family-1-glycosylhydrolase
MFHKKLKNFPKDFLWGASTSAYQVEGASLEYGKGPSVQDIKKIPEGTPDFKVSSDHYHHYKEDVALFAEMGFKAYRFSISWARLIPNGVGEINPLGIEFYGNLIDECLKYGIEPIVTMYHFDLPAALQTKGGWSNRETIDAFVNFAKVMFENYGDRVKYWLTINEQNMMTLVGDVIGTLDGIETDNVQKELYKQNHHMLIAQAKAMKLCHDMCPNGKIGPAPNISAVYPASSKPEDILAASNCSAIRNWLYLDMAVHGRYNPTAWNYMVEKGIEPTIEDGDMEALRSGHPDFIAFNYYNTATVEAFPGEITNERSGGDQQSGHGEQGMFKGVSNPNLQKTEFGWEIDPVGFRNTLREVYERYALPLIITENGLGAYDKLEENDTINDDYRINYLRKHIEQAQLAISDGVDLIGYCPWSAIDLISTHEGFKKRYGFIYVNRDEFDLKDLRRIRKKSFFWYQNVIKTNGEEL
>NZ_CP033249.1|WP_043852472.1|3330158_3331652_+|leucine-rich-repeat-protein
MLRLSRKLSKLILIAMSINIINTTNVFATENNSNITISNGIVTISSNVTEIDSSTFSENNNITKVIIPSNVKKIGEGCFSNFKNLKEVIIEDGVKEIGSNAFIGCENLEKINIPSSITVVGDFAFIGCSKLKDVDFQSKTTNIGGSTFLYTAWLDKMRDDNGLVIINNSVISGKNTSDSLTIPDGVKIINSHAFEGCNTLKEINIPDSVVEIRDSAFEACSNLSKVKLSNKLETIGENAFSDCKLQSVNIPSTLKSVQLYSFNSDITVTGAVDLYNSLIKPLKTAKEDNLNILLRNKPYGWGKATESGDKIFYKNSKGELQTGWMDLDGKKYYFYSNGQLATGFIDLNGTKYYFDPSSGNNLGNLVVGWKNINNNWYYFNQSGDGDKVAGFMGTSWLYDDGNWYYMYSDGTMATGFINLNGAYYYLNNSGSMVTGWQYLQNSWYYFNKSDDGGLEGLMKKGWNRINGNWYYFNYSDGKMAHDTWIDGYYVNSSGTCV
>NZ_CP033249.1|WP_033127508.1|3331839_3333078_+|IS256-family-transposase
MTKKIDTNFDYNEEIKKCKTIDDVMGKNGLIQKLVKDVLENILEGEMEEHLGRNKYERTESNNQSNRNYRNGYSSKNLRSSFGDVDLDVPRDRNAEFEPQIIKKYETVCTELDKKIISLYAKGMSTSDIQSEIEDLYGIKISPSMVSKITDKVLASATEWQNRALDKIYPIVYLDAMYFKVRSNGKIINKAVYICLGYTMDGYKDILGIWVDEAEGAKFWLGICNDLKNRGVKEILIACMDGLKGLPQAIKTVFPSVNIQTCIVHQIRNSIKYIASKDKKAFMKDLKEVYKASTEELALAQLDNLKSLWGDKYAIVIDSWYNNWSNLSTFFDFSPSIRKMIYTTNALEGFNRQIRKFTKVRVIFPTDESLNKCVYLATMEIIEKWSQPTPNWGATLAELSIIFEDQLKDELA

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Crispr_ID: NZ_CP033249_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033249_5

3375822-3375908

Orphan

Consensus_repeat	Method
TTAATATTATTACATTTGTAGTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033249_5

>merge|NZ_CP033249|5|3375822-3375908|CRISPRCasFinder
TTAATATTATTACATTTGTAGTTATCTAGTAATTATGGTCTTTTAATTCAAAATTTTGCTTTATTAATATTATTACATTTGTAGTTA

>NZ_CP033249|5|4|3375822-3375908|CRISPRCasFinder
TTAATATTATTACATTTGTAGTTA	TCTAGTAATTATGGTCTTTTAATTCAAAATTTTGCTTTA
TTAATATTATTACATTTGTAGTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033249.1\|WP_153739554.1\|3388046_3389024_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380481
NZ_CP033249.1\|WP_003407822.1\|3357855_3358554_-\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|227093
NZ_CP033249.1\|WP_058230192.1\|3393469_3395251_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_153739553.1\|3385290_3387528_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_002582348.1\|3374756_3375806_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_070779936.1\|3369510_3371751_-\|cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|119407
NZ_CP033249.1\|WP_057087979.1\|3356853_3357555_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033249.1\|WP_153739551.1\|3376017_3379023_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_043852453.1\|3396061_3398065_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|213222
NZ_CP033249.1\|WP_027636894.1\|3366153_3366552_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033249.1\|WP_070779935.1\|3366894_3368907_-\|cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|119407
NZ_CP033249.1\|WP_153739556.1\|3391513_3393031_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_070779934.1\|3372093_3373689_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NZ_CP033249.1\|WP_003423843.1\|3358744_3360595_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|270700
NZ_CP033249.1\|WP_043852461.1\|3362681_3365753_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_153739552.1\|3379668_3381312_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_046058496.1\|3383316_3384732_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP033249.1\|WP_153739555.1\|3389038_3391045_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP033249.1\|WP_043852458.1\|3381904_3382897_-\|transposase	unknown	unknown	gnl\|CDD\|226202
NZ_CP033249.1\|WP_058229321.1\|3361203_3362196_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226202

Protein	Function_ID	Function_description	E-value
NZ_CP033249.1\|WP_153739554.1\|3388046_3389024_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|380481	cd01539, PBP1_GGBP, periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.	9.76996e-60
NZ_CP033249.1\|WP_003407822.1\|3357855_3358554_-\|NTP-transferase-domain-containing-protein	gnl\|CDD\|227093	COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane].	5.44976e-71
NZ_CP033249.1\|WP_058230192.1\|3393469_3395251_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	7.92747e-35
NZ_CP033249.1\|WP_153739553.1\|3385290_3387528_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	5.90979e-35
NZ_CP033249.1\|WP_002582348.1\|3374756_3375806_-\|hypothetical-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.57954e-16
NZ_CP033249.1\|WP_070779936.1\|3369510_3371751_-\|cell-wall-hydrolase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	2.70382e-60
NZ_CP033249.1\|WP_153739555.1\|3389038_3391045_-\|HAMP-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.78344e-48
NZ_CP033249.1\|WP_153739551.1\|3376017_3379023_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	6.80413e-25
NZ_CP033249.1\|WP_043852453.1\|3396061_3398065_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.04252e-101
NZ_CP033249.1\|WP_153739552.1\|3379668_3381312_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.06313e-39
NZ_CP033249.1\|WP_070779935.1\|3366894_3368907_-\|cell-wall-hydrolase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	1.85301e-68
NZ_CP033249.1\|WP_153739556.1\|3391513_3393031_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.00074e-39
NZ_CP033249.1\|WP_070779934.1\|3372093_3373689_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NZ_CP033249.1\|WP_003423843.1\|3358744_3360595_-\|phosphotransferase	gnl\|CDD\|270700	cd05151, ChoK-like, Choline Kinase and similar proteins. This subfamily is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate and displays negligible activity towards N-methylated derivatives of Etn. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	2.58556e-49
NZ_CP033249.1\|WP_043852461.1\|3362681_3365753_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.07163e-19
NZ_CP033249.1\|WP_046058496.1\|3383316_3384732_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.02152e-170
NZ_CP033249.1\|WP_043852458.1\|3381904_3382897_-\|transposase	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.20072e-08
NZ_CP033249.1\|WP_058229321.1\|3361203_3362196_-\|hypothetical-protein	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.3738e-08

>NZ_CP033249.1|WP_002582348.1|3374756_3375806_-|hypothetical-protein
MRNKFLNKLIAVSIALTAVTVMIPMKTEAAWINNYYGGFAYSNGYYLSTGWNMINGTWYYFNSLGVMQTGWLNSNGTWYYLDQSGAMQTGVIQVEGKIYLLGPSGGMQTGSNIINGKMYYFGPDGVCMGTDVPTPLKGYDYYGNPVQPYVPSQISNPNAVMDSNIPLENGQKIEEQYRVYYKDDDGDLILTKRIDADTKITLYEPDKAGYEFIEWNTKKNGNGTSYDAGDKVKLTGDLTLYAQWDEVETDDDSDEDTIKVTGITLGAVGYTGTTINISVGDTVQFTRKIAPSTATNTKVTWSVKNGSTGKAEITSTGKLTALQPGTVTVRATATDGSKVFKEMTVIIEN
>NZ_CP033249.1|WP_070779934.1|3372093_3373689_-|peptide-chain-release-factor-3
MADYIKEIEKRRTFAIISHPDAGKTTLTEKFLLYGGAIRLAGSVKARKASKHAVSDWMEIEKQRGISVTSSVMQFNYNDHCINILDTPGHQDFSEDTYRTLMAADSAVMVVDAAKGIEDQTRKLFQVASLREMPIFTFVNKMDREARDPFQLLDDIENELGIKTYPMNWPIGSGKEFKGVYERDNNRIIAFNGGNHGQNEVEAIEGTPDDPKFREILGEALHDKLMEDIELLDIAGDELDLEAVRNGELTPVFFGSALTNFGVEPFLEHFLEMTTAPLARHSSVGDIDPFEDKFSAFVFKIQANMNKAHRDRIAFMRICSGKFNKGEDVYHMQGGKKIKLAQPQQFMAQDREIVEEAYAGDIIGVFDPGIFSIGDTLCAASKKFKFEGIPTFAPEHFARVRPVDTMKRKQFVKGCTQIAQEGAIQVFKEIHIGMEEIIVGVVGVLQFEVLEYRLKNEYNVDIKMDRLDYRYVRWIEDQNIDMDSLNLTSDTKKVKDMKDRNLLIFQNDWGISWALDHNKDLVLSAVGKNDD
>NZ_CP033249.1|WP_070779936.1|3369510_3371751_-|cell-wall-hydrolase
MILGLVPTLSVQAATTDFKIISKTEVTAAQAKKWAQSKGATDTFADLAKLYWKYAEECGGVNPGIAYVQAAKETGYGRFGGVLDESYNNPCGMKTSSGGGDYDKEAHQRFNSWDEGVQAHMDHLALYAGADGYPKANTYDPRHFVTIKGRATTTNSLGGKWAPSATYGEEIGKLYMSLMDSAGVTFEKDEDEDLWEDVEDEEDTSAAPNPGTVEKKPADLSIEEAIKLPEKITNDTSGTDSSQGSGNDSPNITSTIGWKNVDGNWYYYKSDETKAFGWIKPDSNWYYLDDADGKMVRGWLKNNNKWYYLDESGAMITGWKLIDSKWYLFNKNGIMTTGVQNDGNSSYYLDKSGAMIEEQGWKKVEDKWIYLEKGGKIKLGWLKENNAWYYLQGDGSMVNGLKRIDGQVYSFYDNGTMQTGWKSVNSNWYYFKSSGEMATGWTYDGDTCYYLYDNGAMAKGWITIGDLWYLLSSSGVMQTGWVTSNGDTYYLDKSTGRMVTNTTVDGYKIGKDGKRKGKVNQGDSNSNNSNSNNSNSNNSQTGPGSAGKVIYVDAGHDYGKDSGAVATINGVTYSETDLNMQVADKLKTSLENRGYTVIMTRNLGERPSFSSLTESLSYRVNKANNANADLFISIHHNSAGETAKGIETLYSEVSQDDAFGGQYDSTRIAKSKSLASEINNNIASSLDLTNRGGKSQNLYVCRNTKMPAVLVEVGFITNAEEAVRCSDPSSQQRVAEAIAAVVSKHY
>NZ_CP033249.1|WP_070779935.1|3366894_3368907_-|cell-wall-hydrolase
MKIRERLASFFIALFVAFSFIPSMKVMADTVADINIISDTKVTVAQAEKWAKSKGATDTFISLAELYFKYADECGNVNPGIAYVQAAKETGYGKFGGVLDESYHNPCGMKTSSGGGDYDPNAHQKFNSWDEGVQAHLDHLALYAGADGYPKSDTFDPRHFVTIKGKAPTVNSLGGKWAPSTVYGEEVNSLYRDLLKSAGVTIGSEEIPNEDNSGNNSGSNSGSGSNSNGSNNSGTPGGSTNVQPPKDTVEPQGLPVNKPIAITADNSTNISSNIGWKLEGGSWYYYRSDGSKATGWIKPDANWYYLYSDGVMANGWVQLGSTWYYLQSSGAMKLGWLKDGSKWYYLQGNGAMVTGFNSIDGKTYFLDSSGTMRVSWFKISGQWYYFNTDGSMLTGWIRPDGNWYYLFSNGIMASGWLARDGELYCLSESGVMQTGWVYEKGGYYYFHPTSGKMLRDTVVDGWEIGPDGKRGDRVGGGSSKLIVIDPGHNFGGDDGAYGYHSGVTYSERDLNMQVALKLKTKLEAYGYQVVMTRNESDRETLSVSESLAKRVNLANSLNADFFVSLHHNSAGSESANGVETYYSSNASNSNNISISRNMATKINNAIVGKTGQYNRGAKDGNLYVCRNTNMPSVLVELGFVSNPTEAAKCATWTNQDLAASAIAEAIASSI
>NZ_CP033249.1|WP_027636894.1|3366153_3366552_-|hypothetical-protein
MNWFRKFMYGRYGVDELSMVLVGVSIALLLLSSLLPRSLSILSLIAYIPMVIYIFRIFSKNIFKRQQENYKYISFKNSMLSKAKKYKGKIQGAKTHKYFKCPSCGQELRVPKGNGKITITCPKCKTSFKAKS
>NZ_CP033249.1|WP_043852461.1|3362681_3365753_-|cell-wall-binding-protein
MKKIVKRLLALLIVFASMFSFLPLQFGDNGQEANAANDSSVDISYADLSLRVVGGTSILDKKTDDTVGKLPYYNTSDGENTFDLTISDFSKTENQIKEELLKKYPEGGSGETTYVSNAYMNIISLNNIKLATRSGAEIPEGRDALDDLEIKMEKITPSGALNRFGVRFDNMPLGVDRIDYNLLGTVQKIKYTVNKETSTVTLEKSGTYDNVNLSESIDSFIINNGKDFVGKNVESFTLDQYVGKRDLIDSEETKYNNKAPLLYTAEAEADETIKMRYTWEVPDSLTALNYKMKFTMDLFNTHDNTNVYVNGTKGQGQAIDSNTISGFLNDLSNNDQFVVIKTKNGTDIAKSYSAEIRFPKKKTENDFSLIEAGVLKAEYANDSSVKAYIGKKFTETAKTDADGNRYVEYKGTITIDPKARMVCLRPKVVSGVNVEYELYNNYTVNGITKAAKAYELINGQAYIDFNLGDENELELQIKDASTQKLLAKYIYTVKQRDDAEKAFNENFIFDDNNSNTYLTREGSKEKISFKVGKSENRSTFDLYTKDKNEVKITLDPDGITNSNEYFKVWTSDTLDGNNFTEAQASIDNEFDINSGIRDTDLYVDISKAKRIMVQAYYDEVTEKDGVYTLVKSYSLGSKYIFFIPANINSSDTDDNQKSDNAVLSNIKVKGQTLYNLDEDKNGFSIDSRNYRVTVPKDQTTAVLTVVPEDENVKSIVATVSGTDTSYELYPGEETEFMLNSSGITDLEITVTAQNGKKTEVYNLSIINNSKGGSSKLKDLILSSGDFKFDSDVYTTKVQVEQSVNKISITPIAEDSKAKITINGQKFTGKPISVSLAGKQTTEVDIEVESEDGESTTTYTLKIKRVSVISDDDSDNNQGTTEDIYYDYDNDCWVDTTKYDEWGTIKNRVMYFDKRGRQVKDRWIYTGKKWYYLNEAGYRATGWKIDDETGQRYYMDNVTGEMKMGWMNLNGSWYYLGTTGLMHTGWLWLNNNWYYFTENGEMITNQSMVIDGKMYRFATDGRIY
>NZ_CP033249.1|WP_058229321.1|3361203_3362196_-|hypothetical-protein
MIERDWEFEKIKKYKENVLRENIYNKENVKKYKECPYCGSKSFIKYGNYNRIQRYKCKNEECKKTFSNTTNSVWKYLKHKPEKWFEFIELMGEHTTLNECAAKLEISIVTAFYWRHKIFHAIENNYKPEKFDEVVYVDTYYTEKCYKGSRNKNYTYADKVKNKFDKMYGLVPRNVSVLIAEERGKMPLIRRTENDETIINNFNNNVLKIAAKDCYMRTDYFTNKKLKNNLLQYNKKLSNATKKKYGLKIIGNRIEDKIKEDKKKNIMAYLTAWLSRCKGIATKYINHYYNFYSLIDSEKVFDYMSIFFDLLKNGSYTSVEVLRTNHIEDY
>NZ_CP033249.1|WP_003423843.1|3358744_3360595_-|phosphotransferase
MLEDRLEILKILNENFNINQRELSKRTNMSLGKVNSVLKEFTEDNFIDRIVNNRGILYKVTDKGMKFLEESIANAKNTRLKLHEEEKKIVKQAVILAAGRAEHFGKPVGLLEIEDFKLIDRTLNILKENGITKIVLVTGYESEQFEEYFKNSRNIKIVKSDIYKWTGTMHSLSLAKEYIDDDFLLIENDLIFEKRAIKELSESPNRDCILFTNESGSGDEAFVEIRDNHLYKMSKDIHQFNRIDGEMIGLTKVSYKLYEMMLEEFKGNVNPYLNYEYVLLDVARNYNIGFVKIDDLAWGDADSIKEYEKIKNYLYPTIRRRELNYEINNIKSIVCEAFKVEDEDITEVTPAGGMTNKNYRICVKGTRYILRVAGTGTEQMINRNTEMFNSAIASEKGFNVEVPYFNLETGVKISKFIENAETLTHRSVKKEENLRQVTKILRDLHESEDFRMDNEFNMFRELEKYEEILRKDEGQFFDDYAEVREKVMALEEELQRCDRVFVPSHNDLVSENLVKDTEGRIYLIDWEYSGINDDMWDLAALSLENEFSEDDIELMFRLYFNGEEPDENSRRRLLIHQICQDTLWAVWTLIKEAEGDDFGTYGIDRYNRAKEYLKKL
>NZ_CP033249.1|WP_003407822.1|3357855_3358554_-|NTP-transferase-domain-containing-protein
MRAILMAAGMGTRLRPLTENTPKSLIEVNGMPLLERQIINLREIGVEEIIVLTGYLHEKFDDIVKKYNLIKVVNDKYDVYNNIYTMYLVRDYLKDAFVIDADNYITRNFLPKVQPKTSVYYSACKENITGEWILKYTETGRIYDVEIAPKNSKASYIMSGASYWTEKDGKIISEKVKKAVEEDKLFDIYWDNIAVENYDNMNVYIEKINSDDIFEIDTLEDLDYLKSKLNNM
>NZ_CP033249.1|WP_057087979.1|3356853_3357555_+|hypothetical-protein
MNVTIIYDNLKDDNSYDHINFLLKNLKLNTPINCTEYFLPTDFSLHCKHYCQCIIGNCDYFNFCSVNKIAKSISDSDLIILVCSSLRKCFLPPSLKLLIEHLSYIWMPHKNHIPMADKIGLVISNDYVPLLPSTGRTLKKHLKFWGIKNILKFTSHDSHKIIPNTNLLSKDYINLLALSIKIMNIYSSNHTTSSHSGNIIKFPYSQLISNKKFLSNNNPTDNVIPLKKIQNDL
>NZ_CP033249.1|WP_153739551.1|3376017_3379023_-|cell-wall-binding-protein
MKRDLIKKLICCMAITACISSTMPVDVYAATWMNDNMGNYYFYESNTYAVGWRNIDGTVYYFDASGVMQKGWIKYGDSWYYLDNNGALKTGWINYNGEWYYSNSAGIMQTGILLIDGQTYYFGNNGVMKKGNVIINGQFYTIGVNGAIVSNAVPVPDKVFDRNNNCIKQINSVDSTTIMTPDGSKYDNPIVDQSEDGDYEEPARKFTVTFRDENGQELKTKNITDGDTVKMYEPDDENGKGDEDRNFIEWNTKRDGSGKSYDSDEKVKVTKDLTLYARWEELEEQTLVSSISITGSNEVEIGKTTQLTAEVKPSDATNTKVKWSIVDNADGTASGKASIDQNGVLTGLENGLGKITVKAEAMDKSNVSTTKVITVVEAKNLIESIKINGPDTISEDGAVVKLTADVSPETASNANVSWKITDGSEYAEIDRDTGELKALADGKVTVMASAKDGSGISATKTINITGQSVKATKIQVSGYENVKTVSTGKKLQMVARIYPDNVASANDEVEWSAVYTSGEKIGEQVSINEGTIGVIGDAAGQRLKYAVLNPEYRGKVEVTARSKSDSSILGKTTITVVKDAESVDIKAIDTSGNDITNKPEITTNAGKLNLKAVLNPSDTTDTSSVKWSMELVNGDGEDTEVSNYATLTPSETSAVIAAKKNGEIKVIATANDSSKAIGEITIKIDGQKIYAKEISLYQDGDESKPVKEGYEFNIQKGASITVEGKVGPDNATNKNIEWSVLGAKDYVTSKIDGNKLTITANKDLSSEMAAVRIKAVADNIIKEFKINVYENIQGVNISTPSAVVLGQDFKATSTLFPVNVNGDKIKLSVVTKMDDGSLTGSAFINGEVEVSRNTTTATITPVNTGTIKLKALATLNDSEQTYTTGEINILNPIDNIIIEGTNNSFTLENGQTRNANLTAKVNGAPAGGYSSFLKWEIKSQPSNVIAKVDGNTGIVSVTRTGDIAVGSQVIVRVSANYDSTKYSEFIIGVSNAPVVDSTATS
>NZ_CP033249.1|WP_153739552.1|3379668_3381312_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MIKRLKKTSALIVLATTLATIVPVGNTQIRAEAADKYSNEFSNNYNIESLENNISLASEETSEDKQIAGKITQYINGKYPGATVKVQSPKYIKLTITKSIAEKMATQICSSNDTIRQILKNEPNLVKPGASQDEVNKIVDSMTDEQIESVKPKVYNAVYQTILAFDGQSVPVYGYEVVSGDQIEDTGYFVGGKIGALIMQKEGKPLCVSTEFIKDLNNQITNKILEEIKQKISEIIQNSGITEIIDKVLKKVNSVVSDVTDTIEDLSDAIDDLTDSIKDKADDIDDAWDKVFDRFDNDEGWGKKDGYIYYYDKDGISLKGVQKIDGKTYYFNRIDGAMETGWQIVDGKRCYFDEKKGYQLFLQWVQDGEDWYFLSDQGPVKKSEWVNDNGRKYYLKSDGKMTKDWLKIDDDWYYFNGSNGAMEYSTWKYSNDKWYYLNQDGKAANDWTYINENWYYFRENSCSMETGWFRADGSWYYSDSTGAMKTGWVQGDDGWYYLDDTSGKMKKNEWVYTNGSWYYFNINGAMVTKARYIDGVKYNFNSDGRMA
>NZ_CP033249.1|WP_043852458.1|3381904_3382897_-|transposase
MIERDWKFEKIKKYKENALRENIYNKENVKKYKECPYCGSKSFIKYGNYNRIQRYKCKNEECKKTFSNTTNSVWKYLKHKPEKWFEFIELMGEHTTLNECAAKLEISIVTAFYWRHKIFHAIENNYKPEKFDEVVYVDTYYTEKCYKGSRNKNYTYADKVKNKFDKMYGLVPRNVSVLIAEERGKMPLIRRTENDETIVNNFNNNVLKIAAKDCYMRTDYFTNKKLKNNLLQYNKKLSNETKKKYGLKIIGNRIEDKIKEDKKKNIMAYLTAWLSRCKGIATKYINHYYNFYSLIDSEKVFDYMSIFFDLLKNGSYTSVEVLRTNHVEDY
>NZ_CP033249.1|WP_046058496.1|3383316_3384732_-|group-II-intron-reverse-transcriptase/maturase
MDKSKKLQRKQKTQYRDQLMEVEVELQGKSKVPSNSMVLPNRESVNDGAFDTSRLLEEVLERNNMLLALKRVISNKGSHGVDGMKTDELREHIKKHWETIKAKLLENRYNPSPVRRKEISKPDGGIRLLGIPTVQDRLIQQAIAQVLSKIYEPLFSENSFGFRPRRGAKDAITKSKQYINQGNRWVVDMDLEKFFDKVNHDILMAKLEKKIQDKRLLSLIRKYLKSGILINGVSVTSEEGTPQGGPLSPLLANIMLDELDKELERRGHKFCRYADDNNVYVKSKKAGFRVMNSMTNIIENNLKLKVNKDKSAVDFVSKRKFLGFSFYFSKSGAEIRIHEKSIKRFKEKVKFHTNRNKGISMEYRLLKLNQITRGWINYYGIANARGRLIELDKWIRRRLRACIWKHWKKTSTKQRNLVKLGIDKYKAWQYANTRKGYWRISKSPILNNSLNNKYLESLGFISLIQTYQMKH
>NZ_CP033249.1|WP_153739553.1|3385290_3387528_-|cell-wall-binding-protein
MRAKFNFKRVFAYLLIFAMTFSFVQIGQANPVKAATSGSKEVNDSFKFIIGDASSGTTKDVDMDYSGDLVLRSVTLSQTYTIMPQAGYNIESVKSSSDKMKITKAVSGTTNTFTIGTIKDYSNFKLTVKVKNSSGEINTYDIRIEFNIDSSLEFNKLRITVDNDDPVTLTYTQCDSEGIYYYEESNPEAKKAKIEMFDDSNNAMSFKVNGGTNKTVNLVGGDNTIELTVTSAGYSKVYTLVITKKGVAKLKSLVPSTGSLSPSFNSDTTEYTVTVPTTQETIAFTPTAVDNSSTIKVKKITVASGKKSQDIKLDEGENEIPIVVTNKDGDVTTYKVTVTRTEKFRSANLKSLKLTSGTLSPTFNKGVYQYTTIVENTVSSVGVTPVAEDTNATIEVNGKEIPSGATSPYINLDEGGNVINVTVTDSKGNDNTYVIMITRKYSKNNVNLSSLSVTDGTFSPKFDPEIYAYSVKVPRNIEEVRIKFETQNEKSKVTINGVEYKSGQQSDKIKLDLGANTVVVKVVSEDNKSTVNYTLSIIRDKVQGTLNEWVLVGGEWMYYDGDGIPAKNRWVKYDNQWYHVDVNGYMNKDGWLFDGGKWYYLDPNGIMLYGWIKDTGFWYYLRESGEMVEDSWTMLDGNWYFFNQYGQMQTGWTLYKGKWYYLDDHGVMQKGWITYDKNKYYLDDDGTMRTGWLYNGKVWYYFESSGRMVTGWQTIGNRSYYFDSKGAMKTGMLFLDGRWINLDSL
>NZ_CP033249.1|WP_153739554.1|3388046_3389024_-|substrate-binding-domain-containing-protein
MKKLLSLLMVFVLMFTALGCSKNGSKGTSIGNTKVFASIADDDKFKQTIVSGMESYADENNVDLDVAIAHNNVEAQVQQIKDAKTKEYDVIVCILVESDTAQQIINAAGDIPVIFANVEPDSGRLKSDKYIYVGSDENEAAKYTFESLKEYFKDKKSFNAVLFEGSMDSKSASVRTESLKSQLKKNGFDVNYVFQDDAGWEREKAKKMFEAFLKLNVSYDCIISNNDEMALGVIDAMEENGIDPSKVPILGLDATPEACKAISNGKMSFSIKQSGEGQGESVIKAAQALKNGDKISEIENGDSSGKYIWYPYSKVDKSNVQQYMR
>NZ_CP033249.1|WP_153739555.1|3389038_3391045_-|HAMP-domain-containing-protein
MWHAKINKKGGKYIPIKYKILSVILPVIILAIGGLITVSYNKSSKIIEENSYSMLESSVKNQTIQIENWLENNLQTFNTIKKSLGSTQYSQEELKKILNQYYNFNSNFLDGLYISDLQGNVISADNSQMKFENATSSQWFKEGLTHIKMRYGEAHDDYAGNKVISATGLIVDNDNNPVGVIGADVTLNRISIIVNSLIEMDDAQSFLVNKDTGMVIASSDSLEPYTILGENNENLLYSKIAQSIESGQHSAQEIENNIVDMHDVKNTSWILVSYVPKSSILSSMFTLRNYMVIIAIVALAVLVLITHRTINYIINPVNDISKKIVKMAEGDFSIDIDVKSNDEIAVMSQSLKNFIESMRVMLNDIKDISMEQKNQSFESKNISEHLFDSSKQQAESMNNLNIVVGEMAEATNQIADTATSLAGIACETNDNGNKVKDKMIETVKMSEVGKKDMEHVEISIRTIETSIKELKDVIDEVGKSSEEINSIVSIIGEIAESTNLLALNASIEAARAGEAGKGFSVVASEIGTLANNSTSSVNDIAKLINNINKLISNVVSKVNESVNHVNESSELITDSVRKFDNIYNTINESDKLVADMLKKVEEVGKAADNMAAISEEQAASSEEISSTSQDMLEHSQNITQSSYNVAKGADVLSDIAKQLESEVEKFKL
>NZ_CP033249.1|WP_153739556.1|3391513_3393031_-|cell-wall-binding-protein
MRKLREGIAATVLALYSLIGIEMLSGSLTCVEAYAKNIEDKPYLKDIYVGLGYDIEFIKDKYEYIVDVDKDVEDIYVKTRPENDNDIIKINGKVITKDDKFKKDLSLEMGKNKVVIEVIKNNDNNEKEYTDNDDDFSEDNVQNDKDKYGSAQDKTVYTLYIYRGGADEVYLKNITLDKSNIGYFVNKKNYNIESDENGQLVKLEVETFGDEYSVFVNGNKLDFTNSLSLKFKGIGKYTITLDVVDDETKRKSTYVLNIYRGIPVTPNVSDSINSVLKPNQWVIVNGRWRYNDAVGQPLKNTWFFDMNYDSYFYFNGRGNMKTGWINEGGNTYYLGNDGMMRTGWVEYEGKWYYLDMNGVMRTDWVKNNGEWYYLDQDGSMKTGWIVDKENWYYLNNDGSMETGWILDYKKWYYLSQNGAMKTGWAQYKDDWYYLNNDGSMKSGEWVEYKDKWYYINYSGTMRCGWLYKDDKYYYFNEDGSMRTEPIVLEGYLYNFNEDGSVNFND
>NZ_CP033249.1|WP_058230192.1|3393469_3395251_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MIKRMNKLTALMVAATAVASIVPAVSASAAAKLEVQEGNIDAAVAYGDGKYVYDGYLTDDDESGLYFNNGTKDSFLENDEDYEFGSEKYGTKYTIVENDGEDYLLDLSSGKVLDDESIEDLRNNVELKLRTTLKKADDRYATVNNKIVFENNDEIAQVLGNQFGDVWYSYGVKSADSDKTFYGFANESGKYIDASALANMTVSTTDSAVRVTEFDKEKNDAMVSLAEAPKVIAQDSSYLYAITKVNVTIAGEADGTRTYIQKISKAQGDTKDGAYMPKSVDSYEISSNFYIDKDNDDTAKAEELLLDENNMVRVIKDTIYVTTVSEDGKVYVNTIKLKKEKVTKNDGTKKLDVYVAVKDQDDDEKIEGGANAVSIDAEGNTWAVNKGKIYKFNGTEFVEVYTCDRTIDHLDVYDENNLIAWNKENEVFATVQTKDGNGTDEGDKEETKAGWVTNADGTWSYNKADGTKTTGWLLDGSTWYYFNTNGVMQTGWVNVNGTWYYLNPVSNGYKGAMQTGWLNDNGTWYYLQSNGAMKTGWLNDNGTWYYLNSNGSMKTGWLLDTDGNWYYLQSNGAMAKNTTIDGYKLGSNGAWIR
>NZ_CP033249.1|WP_043852453.1|3396061_3398065_-|ABC-transporter-ATP-binding-protein/permease
MKLVQLKNINKYYDGSKKNRFHALKDIDISFERGEFIAIIGESGSGKSTLMNLIGGLDSDYSGDIIVEGNNINTYNQKQLDIYRKDKVGFIFQSFNLIPHLSVLDNVTIPMIISGASKSSRVKSGREILKKVGLEKYEDKKPDKLSGGQKQRVAIARALVNNPHIIIADEPTGSLDSHNTDQILNLINEIVKEGKLVIMVTHSEKVASCADRIVEIKDGVIVKDIRNKQIKEYEADLSYGEKYENGKRLNSNLHIKRKNKNLSVFSAVKLALINMKEKFLRNILISLGASIGIMGVVLMLGFGNGIKTYFNNAMDNYVNPLVIEVNMPEADEEFKDSDNIIDIPKMNSGTAFEEEDFEKLKSIENVDSVEKGYNVIAMGANSVSTDHGGCNIIRLATVSSGILESSLSSGNIPKEGEILINKSVADKLGENIIGQKVKLSILIGETKVKNEFIVSGIYEGAYGDFNSMIKCAFINYSDLEKIYTQNNRELKPNTAYITSSGENYTDGIKLKAEEMGYTGSSQEQMTNLFNEMISITTYVLSGIAAISLVVSSIMILVVLYMSVVERIKEIGILKAVGARKKDIRRIFVSEAFLIGIFSGLGGVGISIVIMKLINRMSLQIFSVDLLLIDTNHIITGICLSVIISIIAGLLPAAKASRLDPVDSLRRE

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Crispr_ID: NZ_CP033249_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033249_6

3445165-3445364

Orphan

Consensus_repeat	Method
TGGTATTATTTAAATGA	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP033249_6

>merge|NZ_CP033249|6|3445165-3445364|PILER-CR
TCATTTAAGTAATACCATTTACCATTAGAATCTTTGTGCCATCCTGTTTTCATAGTTCCGTTATCATTTAAATAGTACCAAGTACCTCTATCATTTACCCAGCCTGTTTGCATTATTCCAGCATCATTTAAATAATACCAGCTGCTTCCTTGAATTATCCAGCCTGTTTGCATTATTCCATATTCATTTAAATAGTACCA

>NZ_CP033249|6|2|3445165-3445364|PILER-CR
TCATTTAAGTAATACCA	TTTACCATTAGAATCTTTGTGCCATCCTGTTTTCATAGTTCCGTTA
TCATTTAAATAGTACCA	AGTACCTCTATCATTTACCCAGCCTGTTTGCATTATTCCAGCA
TCATTTAAATAATACCA	GCTGCTTCCTTGAATTATCCAGCCTGTTTGCATTATTCCATAT
TCATTTAAATAGTACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033249.1\|WP_070779557.1\|3461936_3463178_-\|PspC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_043852421.1\|3440753_3442175_+\|undecaprenyl-phosphate-glucose-phosphotransferase	unknown	unknown	gnl\|CDD\|274396
NZ_CP033249.1\|WP_153739567.1\|3453584_3455447_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_153739566.1\|3451039_3451588_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_043852423.1\|3438537_3439311_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP033249.1\|WP_153739560.1\|3442226_3442622_-\|HEPN-domain-containing-protein	unknown	unknown	gnl\|CDD\|368314
NZ_CP033249.1\|WP_002582425.1\|3460650_3461841_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_153739568.1\|3463601_3464933_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_002581975.1\|3451868_3453452_-\|IS1182-like-element-ISClbu1-family-transposase	unknown	unknown	gnl\|CDD\|372705
NZ_CP033249.1\|WP_046057982.1\|3455999_3457811_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_052501775.1\|3433879_3434959_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NZ_CP033249.1\|WP_153739561.1\|3442614_3442929_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393
NZ_CP033249.1\|WP_153739565.1\|3449019_3450882_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_043852425.1\|3434970_3436146_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP033249.1\|WP_153739564.1\|3446927_3448637_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_046057983.1\|3458383_3460219_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_043852424.1\|3437289_3438534_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213187
NZ_CP033249.1\|WP_153739562.1\|3443091_3444936_+\|O-antigen-ligase-domain-containing-protein	unknown	unknown	gnl\|CDD\|377422
NZ_CP033249.1\|WP_153739559.1\|3436148_3437252_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|372616
NZ_CP033249.1\|WP_043852422.1\|3439370_3440450_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|223906

Protein	Function_ID	Function_description	E-value
NZ_CP033249.1\|WP_070779557.1\|3461936_3463178_-\|PspC-family-transcriptional-regulator	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.01924e-23
NZ_CP033249.1\|WP_043852421.1\|3440753_3442175_+\|undecaprenyl-phosphate-glucose-phosphotransferase	gnl\|CDD\|274396	TIGR03023, Sugar_transferase., Undecaprenyl-phosphate glucose phosphotransferase. This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis, the Methylobacillus EpsB protein involved in methanolan biosynthesis, as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein, which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase, and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.	6.44802e-171
NZ_CP033249.1\|WP_153739567.1\|3453584_3455447_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	4.03689e-25
NZ_CP033249.1\|WP_153739566.1\|3451039_3451588_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	4.15061e-24
NZ_CP033249.1\|WP_043852423.1\|3438537_3439311_-\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.61914e-58
NZ_CP033249.1\|WP_153739560.1\|3442226_3442622_-\|HEPN-domain-containing-protein	gnl\|CDD\|368314	pfam05168, HEPN, HEPN domain.	1.25294e-26
NZ_CP033249.1\|WP_002582425.1\|3460650_3461841_-\|hypothetical-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.59764e-26
NZ_CP033249.1\|WP_153739568.1\|3463601_3464933_-\|hypothetical-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	8.3758e-33
NZ_CP033249.1\|WP_002581975.1\|3451868_3453452_-\|IS1182-like-element-ISClbu1-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.24262e-35
NZ_CP033249.1\|WP_046057982.1\|3455999_3457811_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.46618e-27
NZ_CP033249.1\|WP_052501775.1\|3433879_3434959_-\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.1064e-27
NZ_CP033249.1\|WP_153739561.1\|3442614_3442929_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	4.59011e-12
NZ_CP033249.1\|WP_153739565.1\|3449019_3450882_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	6.57128e-28
NZ_CP033249.1\|WP_043852425.1\|3434970_3436146_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.08637e-39
NZ_CP033249.1\|WP_153739564.1\|3446927_3448637_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.5765e-29
NZ_CP033249.1\|WP_046057983.1\|3458383_3460219_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.74735e-27
NZ_CP033249.1\|WP_043852424.1\|3437289_3438534_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	1.38867e-110
NZ_CP033249.1\|WP_153739562.1\|3443091_3444936_+\|O-antigen-ligase-domain-containing-protein	gnl\|CDD\|377422	pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL.	2.68082e-06
NZ_CP033249.1\|WP_153739559.1\|3436148_3437252_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.05209e-11
NZ_CP033249.1\|WP_043852422.1\|3439370_3440450_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|223906	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane].	1.1796e-164

>NZ_CP033249.1|WP_153739562.1|3443091_3444936_+|O-antigen-ligase-domain-containing-protein
MENLKKFCKEKSITFFFPIALVLTIVPLIVRMRISEPDEDTLKLYGSSANSDLFTQNKEICLIFLSAIILIIAITCFKKFYEKKDKLINIMIICSLIFLGFTFLSTLFSKYKHVAFWGIYDRSEGFITIACYILLFIYSIYTFKKTEEFKFILIPILILVYINGFLGLFQFFGSDLIKTSLGGLIAIPSSYNIDPSKLSLAYESGTIYGTLYHYNYVGSFTALVLPILFGACVIEDDIFLKLLSMGGSLVGLWLLFGSTSRAGIIGFGAIIVFACIFFGKLLLKKKKALLITLACLAVFAVGLNFATSGKIFRRIPSLVSDGLSLFKSNTDFDYRDHIPVKNIEHIDNNIVLTLPTDTLTISFENNDYVFRNSKNEVVDYKSEFNSKIKAYDYTTTDANFSNISFRSGKIKSKTKNDGLMLILNGSNEFMFITRDDNSMHLVDPKTLEEIDLDFPKTIGFNGKEKLASSRGYIWSRSIPLLKDTLILGSGPDTFSFDFPQHDLLGKFYAYGTTNMIISKAHNLFLQIGLNNGVVALIAFVILIMVYIVDSFKLYALKNKYDEKQILGSILALSVIGYLFTGLFNDSVICVAPIFWIILGVGAAVNFINKKAENK
>NZ_CP033249.1|WP_153739561.1|3442614_3442929_-|nucleotidyltransferase-domain-containing-protein
MNADQFRIELDNIKNQMVNKFNPKEIVLFGSLAKGTFRSNSDIDLCIIKDTDNKRDLITKIYTEIDCNVPYDIVVYTISEWEKFKNDKDTFVYSIIKNGVKIYG
>NZ_CP033249.1|WP_153739560.1|3442226_3442622_-|HEPN-domain-containing-protein
MVDTLRYRDWIDKSERDIKSAKILKEHDCGNDVVAFHCQQAIEKILKAYLIIKGDGVVSGHSLLYLCKLAQGHDVTFKKYIKDCGFANQYYIETRYSADSLLIVSDYEADECVKIAEEIYNYVMSIISNKQ
>NZ_CP033249.1|WP_043852421.1|3440753_3442175_+|undecaprenyl-phosphate-glucose-phosphotransferase
MIKENQNLLNKINAFSDIFILFLSMILSYFIRFKLFYHDEFYITLHTYLRFTLFMVPVYIVLYIFFNLYDPIRTSFFSKECSKVIKSNLILITIALSSLFVFKFVHISRLVIVIFYFVNTTLIIIKRGLLRKILSNLRKKGLNLKHVLIVGAGKTASEYLDVIQNNKTYGYNYVGYVSNDSGFYGEKLGDYSQLLDILFEYKFDEVVCALDLKDAEYIEKIVSDCEKSGTKISIIPFCYKYIPSQPYIDQIGNLPLINIRRIPLDNIGNAFMKRTLDILGSLCLILLTSPIMIITAIIIKCTSKGPIIFKQERVGLNKSIFTMYKFRSMKVNSKETTGWSTNNDPRKTKFGSFIRKFSIDELPQFFNVLKGDMSLVGPRPELPHFVDEFKDEVPLYMVKHQVKPGITGLAQINGFRGDTSIKKRIEFDIHYIESWSILLDIEIIFKTAFKGFKNNEKLIITNKEISQDESIKS
>NZ_CP033249.1|WP_043852422.1|3439370_3440450_-|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MKVTAVIMAGGKGERFWPKSRKSLPKQFLSLTDDGKTMIQLTIERLKKIVDIDDVYIVTNKDYRDLVIEQINGIPEENILLEPMAKNTAPCIGLAAMHIKKKYKDAVMVVLPSDHLIKYNEIYIDTLKEAVEVAEEDKNLITIGITPSYPETGYGYINFGRDENDIERNNLYRVKRFVEKPNLDTAKEYLASGRYLWNSGMFVWKSSTILENFQKLMPDMYEGLNKIYETIGSDEEESILQREFAKFKGESIDYGIMERAGNIYTIPGSFGWDDVGSWLSLERINRTNDDGNVIKGNVITINSKNSIIQAQDKLIATIGIDDLVIVDTDDALLISNKSNTQEVKKVIENLKICNRYEYL
>NZ_CP033249.1|WP_043852423.1|3438537_3439311_-|ABC-transporter-permease
MKSLKELYNYREMLFNLVKKDLRTRYKGSVLGFFWTFLNPLLQLLVYTLVFSVILKSDIPNYYIHLFVALVPWLFFSTSLTASSTAIIGNKDLIKKIYFPRIIMPMAVVNGAFMNMLFTMIVVFCVLIFSGIGISKYIILLPIIMILEYLLVLGFAFVVSALNVYFRDLEHILGILTMAWMYATPVLYSIDIVPEKLKGIFELNPMTPIVVAFRDILYFQKMPDLSHMSLILFWSIAFIILGYLIFQKLQRGFAEEL
>NZ_CP033249.1|WP_043852424.1|3437289_3438534_-|ABC-transporter-ATP-binding-protein
METVIKVKNIWKDFKIYYDKGSTLKEKILFKNRNRHEVHTVLRGVNFEIKRGEVVGLIGENGSGKSTLLKLMTRIIYPNKGTIEIKGKVSSLLELGAGFHPDMTGRENIYTNASIFGLKKSEIDERLERIIEFSELGEFIDNPVRTYSSGMYMRLAFSVAINVDADILLVDEILAVGDASFQAKCFNKMQEIKAEGKTIVIVSHDTGSIERLCDRAIWIDQGIKKKDGLPHDVIALYLDKIMNKDIHENTDENEKVEKNSNDKHEKIVNKNENRTGNRYLEIKNIKMADYSTGKEQYNFKCEDKVKIEVQYIRNNKKIYDSVVGIGIFRQDGLNCYGTNSFIDNSEKIKIKDEGVIEILLDPIQLLEGVYTLDIALHDEYGKPYDYIRKVKSFSIYSSIKDCGVVRIKHKIFAK
>NZ_CP033249.1|WP_153739559.1|3436148_3437252_-|methyltransferase-domain-containing-protein
MDKDIFEIDLDDINVEDIMKQIREKIRKQGIVDEEINLNNTIEEHEMLNDYLSMVNNTCSVILDKEIKSHRRFIGKIIILFKRIVRKSIHWYIYPIVEQQNEFNSYTTRTLNSLVKNLDIINNKVTELEKEREEREEREEREKKLREEKMNFNYLKFEDKFRGSQEEIENKLKGYLEYFKGKSNVLDIGCGRGEFLELLKENNINAKGIDIESDMISICNKKDLNVEKIDALEYLKKLDDESLDGIIMNQVIEHMEPKYLCNLIEVANKKLKTGSFLVAETINPQSLIVFTEAYFMDLSHKRMIHPYTIQFLLESNGFKEASIKYMNKVEDLSIPQSDMFPDEFNKAINKLNDVVYGYRDYAVIGRK
>NZ_CP033249.1|WP_043852425.1|3434970_3436146_-|glycosyltransferase-family-4-protein
MDKIAFVIPWYGKNITGGAEHECKGIVEHLNKAGVNVEILTTCVKDFNSDWNVNYYSEGTEIINGVPVRRFRVRKRNVSDFDKVNYKFMNNISVSLEEEDTYFREMVNSIDLENYIEKNLDKYKAFIFIPYMFGTTFNGSKRCKSKCIIIPCLHDESYAYMTRLKEMFKNADKLIFHAKPEFDLASKLYDLKNVKIGVLGEGIDTEFEFDSLRFKNKYKINRPFILYAGRKDAGKKVDVLINYFERFSQENSDVDLVLIGGGNIEIPKRIKDRVHDLGFVDYQDKYDAYSAALCLCQPSVNESFSIVIMESWITGRPVMVSDKCEVTKSFAIESKGGLYFNTYNEFKECLLLYFNNDKLSNKMGINGQQFVKNNFSWSVIVDKYKKFIFED
>NZ_CP033249.1|WP_052501775.1|3433879_3434959_-|glycosyltransferase
MSKKVINQITATMSVGDAISNEVLAIKRILDNMGIENNIYAENIHPKLKKYVNNYREYKGNRDHILINHFGIGSAVNDYVIKLRNTIKIIRYHNITPSSFFEGYNLVTSRLCNLGREQLKNSKEIYTYSLAVSEYNKEELINLGYNNITVIPIIMELDDYKKKPDDNIIKKSKKDIKNIVFVGRVSPNKKQEDIVKSFYYYNKYFNNNSRLFIVGNYEGMERYYKQLNDLVCTLNLEKYVKFTGHIRFEEILGYYSIADLFLCMSEHEGFCVPLVESMYFKVPIIAYDSSAISFTLDGSSILVKEKDYKYIAGMMDYILENDKLREQIVSKQLNRLEQLKPERIEIEMKEYLKNILGEM
>NZ_CP033249.1|WP_153739564.1|3446927_3448637_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MFNRTSKMTALLVAAAAVTSIVPATAAERLGTKEGTITNAIAFDGAYVYDGYRTEDDDAGLYFNNGKDKMVDEDEDYSYDNLSKYGTKYATIEDGDTFLVDLSNGKILDDESVEDKLDNARTKLKTNLKKTDRYGKEVTVDFDKEDQVSAGSFADVWYKYTATTGAGAEYEGNINPVGFTNESGKYVDASQLANIYVYNGEGKTVKLSEYNKDKDGVEASLVSLDAIAQDSDYIYAVATVEVTGVPAELKTQTFLQKISKTQGEKKDGAYLPKSVTSYQLDATIYDDSDVQDAAKLIAGFVDGTDTTVKAVRVKNGNLMVTVVKDNNVKVYTLKLKKTKLDTVDKSHKNVDTYVVISDDDDDQDIVENYSYAIDAEGNTWALDKGKIYKFTGTEFKEMYTCDRSLDKLDVYNDTNLIVWEENGDVYTTVNEGKEVTDEEAGKEDDKTEEVVKSGWDKNADGTWSYYNNGAKATGWVQAGAWYYLNANGIMQTGWVNDNGTWYYCNASGAMQTGWLLDGSTWYYLQANGAMKTGWLNDNGTWYYLNANGSMAANTTVDGYKLGANGAWIR
>NZ_CP033249.1|WP_153739565.1|3449019_3450882_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MLRKSTKVAALLVAAASITSIMPASAAERLGTKDGTITRGFAYADGKYVYDGYRTDDDDAAIYFNDGNKDKQIDDYDDYDMEDESPIFYGTKYVQVEDSGDYYLLDLSTGKIDDDESVQDKFDNSKSKLYTNLKKADRYSVSKDKRDKDDAIVSFKQILEGKRGDVWYQYTALGDTTTSAAVDVTTDAAATYDEGVIRTGFTNDSGKYIDITHDANIYALVKSSTTSDKLKTVKLSEYDKDNGGVTAKFLGTEAITQDNDYIYAITTVQLTYENGYAPAGVENNVSVQKFLQKIAKAQGDKEDGGYLPKSTTSYQLDAKALYDDGDVEEASKVILNDSSLDHKIVNYEVKNSTLYATGVKSGNVKVWAIKLKKGKIDTKQGTKDVDTYVAIKDDDFDQDVVGSDLADSEKAYSIDKDGNTWVLDKGKVYKSTGSDFKEMYTCDRALDRLDVYDENNLMIWEADGDVYTNVAEGKKQTDEDAGVTDEDKNPTTPTVGWNQNANGTWSFYDATGAQMKASWVNLGGTWYYLKADGVMATGWLLEGGNWYFLNPVSNGYLGAMKTGWIQDNGTWYYLNASGAMKTGWFQDTNGTWYFLKSNGAMAANEYIDGYYLGSNGAWVR
>NZ_CP033249.1|WP_153739566.1|3451039_3451588_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MRKSFNKAATLLLSLAIMNVIFPVNAAEKKQYETNIEVENNKLQVDDEGNAVLELVCDSNSGFVKNNGKTEFYDVSGRQAKSSWINISGKWYYFDLNGIMVTGWQRISNKWYYFLEDGSKVTGWIMDEGHWYYLGEDGMMKSSQWVNIDGSWYYFNEKGIMEKDTIIDGFKISSNGISELKL
>NZ_CP033249.1|WP_002581975.1|3451868_3453452_-|IS1182-like-element-ISClbu1-family-transposase
MNTNNIIPMHQIGFPINIENIISDSDSVRVLYDVMEGLDYSELNRTYSTIGRNPALLPKTMFAIIVYGYMEGIYSSRALEKACKRDINFKWLLQGQLPPGHNSIDRFRRERLAGCIENLFNQLVKKLRELNEIQFKNIFIDGTKIEASANRYTFVWKKSIDKFEDRLQKKIKESLIKMNHDLNLCLIITNAKISVQDANYILDSIRIMIEANNIEFVYGKGKRKSKFQRYTEQLNEFIEKQNKYNEYNSIFNGRNSFSKTDHDATFMHMKEDHMKNGQLKPAYNIQIGVEGEYIVGVDISSERSDQLTFIPFLDRLEKNLNQKYESVTADAGYESEENYAYLESKKQEAFIKPANYEKSKTKKFKSDISKKENMYYNTDEDYYICASGKKMLLKGTKKKKTKSGYETTVSIYECEDCDGCEYKSKCTKAKGNKQIHVAKNFMRLRTNSLKNITTPKGILLRMNRSIQVEGAFGVIKQDYGFRRFFMRGNIKVRTEFLLMAFGYNVNKLYHKTIQNRNGELLHKQQAS
>NZ_CP033249.1|WP_153739567.1|3453584_3455447_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MFKRSSKMTALLVAAAAVVSIVPASASERLGTKDGTIDNARAYEGGYVYDGYRTDDDDAALYYNNGSKDVNTDEDEDYDDYTLERYGDKYATVKDGSDEYLLDLSNGKIDDEETLEDKADNAKNKLKSKINKEDRYVFFKDGENDFSKEDDKVVANTNSFARVLSDKYGEVWYQFSAAGDEDAIKRTTGAAVNGEVGYYQGFSNDSGKYIDVTQDCNIYAYDTDKDKTVKIEEYGKTYSANNLMAKLDSVTPISQDKDNLYVVAKVVISGDKQKETTQYYLQKISKSQGDKKDGGYLPKETTSYLLNVKMDEYSDNRLYDDGDSSDAADVIMSYVDGSTFDDGVCKNIEVIDGNVYATLVKDSKIKMFKIKLKKDKLDVTEAVDKKGDSKVKDVDVYTAKKDSDWDHDVVDAATSKEGERYSIDADGNTWILDKGKILKSEGTEFKEMYTCDRSIDKLDVYDENNLIAWSSDGDVYTTVAEGKKQTDEDAGVDTDKKDETPVVKAGWDKNADGTWAFYKDGAKVTGWLNDKGTWYYLDAAGTMKTGWVQAGSWYYLNASGAMQTGWVNDNGTWYYCNASGAMQTGWLLDGSTWYYLNANGSMAANTTVDGYVLGANGAML
>NZ_CP033249.1|WP_046057982.1|3455999_3457811_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MFRRSSKLTAMLVAAAAVVSIVPATAAERLGTKEGNITHAAAFNGGYIYDGYRTDDDDSALYYNNGSKDVNVDEDEDYDSYDLNRYGTKYAIVKDGSDEYLVDLSTGKIDDEETLQDKLDNATNKLKSKLNKTDRYDNDFVNGKVEKILNNKYGEVWYQYSAKGDSDVEKRMTTSAAVEGYVGFTDGTGKYVDVSQTANMYIYLPAAQIENASKGKTVKFEEYGDENDGVTVKLDKVTPVSQDKDYIYAVAQVTVSDKDNKAVAGIQSTQYFFQKISKDQGDKKDGAYLPKSVASYQLDTSKIYDNGDMKDATNVLLAAAKYDPADKGVGKDGDGREVVNVEVKDGTIYATSKDSGKVKVWKLKFKKDKVDANAVLDEKKNEKVDSYVVKKDGDGDHDIVNGAVSIDAAGNTWALDKGVVLKADGTDFKEIYTIDRSLDHLDVYDEKNLIAWADEDVYTTVSEGKKQTEADAGVDEDKKDETPVVKAGWEKNTDGTWAFYKDGAKATGWLNDKGTWYYLDAAGTMKTGWVQAGAWYYLNASGAMQTGWVNDNGTWYYCNGSGAMQTGWLNDNGTWYYLNANGSMAANTTVDGYVLGANGAWVK
>NZ_CP033249.1|WP_046057983.1|3458383_3460219_-|cell-wall-binding-protein
MNKRIKKIIALTVAFSAVTTIAPKTFLGLTSKPAYAASYTARNGELTSLVIKSTNGDKLSLKDGYNGDTVKLSDEKEYFVKLTDDSEGIVINAEAKGSDRIVRIFLTDDSDATAYKPGDKLYLGKGNTTVYVRTYASLSDFRQAKDKDKDVSICEEEYEVNVKKTTGSSYEDTTQDPVYLKDLSLNKGDITFLKQRTSYNIKVASSVNEIKITAEPEDDSSRVRIDGSLVDEDDNYRKTISLDKGKNEIKIKVTDDKDNQRVYTLNITRGSSSDGDSQGDVYLSSLELDEADLDFEEDKTSYEVDVDEDVSKILVTAEPEDEEYLVTINGSEVNSGDEYEKKVSLSKGKNTITVVVEDEVEDAKRTYKVTVNRGTVKDDEDDKEDTDDKNDNSSDDKNSVGWVKVDNDWKYRGEDGKFYVNKWLYDKEQGVYCYLKEDGFRATGWLQEGGNWYLLDSKGAMLTGWQYTGGQWYYLQSSGAMKTGWLKEEKTVTVEDTSTATDKKEDEKTSTSGSTNKTDTSKTDDKKEETTAKTKKVETWYYLQANGTMKTGWLLDNDKWYYMNLSGAMQTGWVIDNNSKYYLDQSGVMATGTKTIDGKEYKFTTSGALIS
>NZ_CP033249.1|WP_002582425.1|3460650_3461841_-|hypothetical-protein
MNKNLKKVIALTLAVNAIALIEPAKEISIFTEAAHAAKYDDPLLSDLKVSGYDVDFDKETYSYSIKVDKDVDQITVTAKPEDSAYEVSVNGDDAKEDDKYKVKVDVKQGKSTITIRVKDEEHDLKTTYELEVIRGSASYGEDLDEDDVYLDNITLSAGKINFSSKVTEYTVSVDDSVRYLDIKAKPMDSDEEYVEINGEEAEEDDDYEQTVTLKDGKNKITIRIENSEKSKKYILNVYKGVEPPKKDDSDEDEVKEDSNNNNQNSNNNNSSQYKNQWVTTQGIWLYYDENGNMMKNQWFNDVNAKKSYFLNENGVMVTGWLQKDGNWYYLNEDGSKHIGWKFVMGLWYYLDGEGVMKTGWIQDANGKWYYLNSNGAMASNTTIGGYKLGADGAWIK
>NZ_CP033249.1|WP_070779557.1|3461936_3463178_-|PspC-family-transcriptional-regulator
MNKNIKKIIAMTLTLCAVSAVCGVKNLNLSGEGTVAAFASDKSSLNLESISLSTGKIDFSSDVTSYKVYYNKAVKNIDIKVSPEGSDKRIRVTINDESVSSDDSYKKNFKLSVGENIFKIKIENRDDESQSKTYTLKAYRGTDENDQEIEQDLYINYLTINGKEMSLSKDKKVYDYKVDKDVKEAKIVIEPDQKYYTVKIGDNTYEGEESIKKTFTLTEGKNEIKIKLTDGEDEEKKQRTYTLNIYRGVDIPTSSTTTNNNTTSTGNTTTNTGNNTGTNNSTSTGTTNSSSSTTNTVSNSGKWQQNSAGKWYYVDSNGNAAKNKWFFVQGDGTMATGWVSFGGNWYYLNDDGTMATEWLNNGGKWYYLGSDGAMKTGWVQLSGNWYYLYSDGTMASNTTIDSYKLGSDGAWIK
>NZ_CP033249.1|WP_153739568.1|3463601_3464933_-|hypothetical-protein
MNKNVRHLIAAALVISAFSAVAPANIFNLGVIEANASTYSGASNGQLKSLSVYRSTGKEAQLYSNLAATKETELTSSTDYYIDLKGSDGVELDAEVEGDDYVVKVFKSSDKDAEGYDPSDLGLVPIDSGSTKLYLRTYRSEDGYKDAWDDGNVKKCLKTYTLHISKDNVNSDEEDDVEYPYLSSIYLSDGSINFTKSKTSYKANVDEDVKQILVRAKPQDDDDLVEINGDSVDEDGDYEKKVSLDKGENTIEITVENDDETTTYTIVVNRGGKSSNSSDEKDSTNIITGSDSFLYNSGTMNSWVSKNGKYMYMDGTGQPLKNKWWFDVSSASDYYFDKDGYAQTGWAQINGKWYYFDNSGKMQKGWISNDGKWYYLNVSGAMVTGWYQDAGKWYYLNSDGSMKTGWLNDNGSWYLFNSDGSMVTGNVLVDGVQYSFASNGVMI

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Crispr_ID: NZ_CP033249_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033249_7

3449096-3449313

Orphan

Consensus_repeat	Method
TTTAAGAAGTACCAAGTTCC	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP033249_7

>merge|NZ_CP033249|7|3449096-3449313|PILER-CR
TTTAAGAAGTACCAAGTTCCGTTAGTATCTTGGAACCAACCAGTCTTCATTGCTCCTGATGCATTTAAGTAGTACCAAGTTCCATTATCTTGGATCCATCCAGTCTTCATTGCTCCTAAGTATCCATTAGATACTGGATTTAAGAAGTACCAGTTACCACCTTCTAATAACCAACCTGTAGCCATAACACCGTCAGCCTTTAAGTAGTACCAAGTTCC

>NZ_CP033249|7|3|3449096-3449313|PILER-CR
TTTAAGAAGTACCAAGTTCC	GTTAGTATCTTGGAACCAACCAGTCTTCATTGCTCCTGATGCA
TTTAAGTAGTACCAAGTTCC	ATTATCTTGGATCCATCCAGTCTTCATTGCTCCTAAGTATCCATTAGATACTGGA
TTTAAGAAGTACCAGTTACC	ACCTTCTAATAACCAACCTGTAGCCATAACACCGTCAGCCTTTAAG
TAGTACCAAGTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033249.1\|WP_070779557.1\|3461936_3463178_-\|PspC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_043852421.1\|3440753_3442175_+\|undecaprenyl-phosphate-glucose-phosphotransferase	unknown	unknown	gnl\|CDD\|274396
NZ_CP033249.1\|WP_153739568.1\|3463601_3464933_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_153739566.1\|3451039_3451588_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_043852423.1\|3438537_3439311_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP033249.1\|WP_046057983.1\|3458383_3460219_-\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_153739560.1\|3442226_3442622_-\|HEPN-domain-containing-protein	unknown	unknown	gnl\|CDD\|368314
NZ_CP033249.1\|WP_002582425.1\|3460650_3461841_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_153739562.1\|3443091_3444936_+\|O-antigen-ligase-domain-containing-protein	unknown	unknown	gnl\|CDD\|377422
NZ_CP033249.1\|WP_046057982.1\|3455999_3457811_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_002582428.1\|3465867_3466095_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033249.1\|WP_153739567.1\|3453584_3455447_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_153739561.1\|3442614_3442929_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393
NZ_CP033249.1\|WP_153739569.1\|3466413_3468198_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293817
NZ_CP033249.1\|WP_153739564.1\|3446927_3448637_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_002581975.1\|3451868_3453452_-\|IS1182-like-element-ISClbu1-family-transposase	unknown	unknown	gnl\|CDD\|372705
NZ_CP033249.1\|WP_043852424.1\|3437289_3438534_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213187
NZ_CP033249.1\|WP_153739563.1\|3445091_3446660_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227588
NZ_CP033249.1\|WP_153739559.1\|3436148_3437252_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|372616
NZ_CP033249.1\|WP_043852422.1\|3439370_3440450_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|223906

Protein	Function_ID	Function_description	E-value
NZ_CP033249.1\|WP_070779557.1\|3461936_3463178_-\|PspC-family-transcriptional-regulator	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.01924e-23
NZ_CP033249.1\|WP_043852421.1\|3440753_3442175_+\|undecaprenyl-phosphate-glucose-phosphotransferase	gnl\|CDD\|274396	TIGR03023, Sugar_transferase., Undecaprenyl-phosphate glucose phosphotransferase. This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis, the Methylobacillus EpsB protein involved in methanolan biosynthesis, as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein, which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase, and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.	6.44802e-171
NZ_CP033249.1\|WP_153739568.1\|3463601_3464933_-\|hypothetical-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	8.3758e-33
NZ_CP033249.1\|WP_153739566.1\|3451039_3451588_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	4.15061e-24
NZ_CP033249.1\|WP_043852423.1\|3438537_3439311_-\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.61914e-58
NZ_CP033249.1\|WP_046057983.1\|3458383_3460219_-\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.74735e-27
NZ_CP033249.1\|WP_153739560.1\|3442226_3442622_-\|HEPN-domain-containing-protein	gnl\|CDD\|368314	pfam05168, HEPN, HEPN domain.	1.25294e-26
NZ_CP033249.1\|WP_002582425.1\|3460650_3461841_-\|hypothetical-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.59764e-26
NZ_CP033249.1\|WP_153739562.1\|3443091_3444936_+\|O-antigen-ligase-domain-containing-protein	gnl\|CDD\|377422	pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL.	2.68082e-06
NZ_CP033249.1\|WP_046057982.1\|3455999_3457811_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.46618e-27
NZ_CP033249.1\|WP_153739567.1\|3453584_3455447_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	4.03689e-25
NZ_CP033249.1\|WP_153739561.1\|3442614_3442929_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	4.59011e-12
NZ_CP033249.1\|WP_153739569.1\|3466413_3468198_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293817	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes proteins required for natural transformation competence including Neisseria gonorrhoeae ComA, Pseudomonas stutzeri ComA, Bacillus subtilis ComEC (also known as ComE operon protein 3) and Haemophilus influenza ORF2 encoded by the rec-2 gene, as well as Escherichia coli YcaI which does not mediate spontaneous plasmid transformation on nutrient-containing agar plates. It also includes the phosphorylcholine esterase (Pce) domain of choline-binding protein e from streptococcus pneumonia. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. .	9.28093e-38
NZ_CP033249.1\|WP_153739564.1\|3446927_3448637_-\|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.5765e-29
NZ_CP033249.1\|WP_002581975.1\|3451868_3453452_-\|IS1182-like-element-ISClbu1-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.24262e-35
NZ_CP033249.1\|WP_043852424.1\|3437289_3438534_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	1.38867e-110
NZ_CP033249.1\|WP_153739563.1\|3445091_3446660_-\|hypothetical-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.04196e-27
NZ_CP033249.1\|WP_153739559.1\|3436148_3437252_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.05209e-11
NZ_CP033249.1\|WP_043852422.1\|3439370_3440450_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|223906	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane].	1.1796e-164

>NZ_CP033249.1|WP_153739564.1|3446927_3448637_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MFNRTSKMTALLVAAAAVTSIVPATAAERLGTKEGTITNAIAFDGAYVYDGYRTEDDDAGLYFNNGKDKMVDEDEDYSYDNLSKYGTKYATIEDGDTFLVDLSNGKILDDESVEDKLDNARTKLKTNLKKTDRYGKEVTVDFDKEDQVSAGSFADVWYKYTATTGAGAEYEGNINPVGFTNESGKYVDASQLANIYVYNGEGKTVKLSEYNKDKDGVEASLVSLDAIAQDSDYIYAVATVEVTGVPAELKTQTFLQKISKTQGEKKDGAYLPKSVTSYQLDATIYDDSDVQDAAKLIAGFVDGTDTTVKAVRVKNGNLMVTVVKDNNVKVYTLKLKKTKLDTVDKSHKNVDTYVVISDDDDDQDIVENYSYAIDAEGNTWALDKGKIYKFTGTEFKEMYTCDRSLDKLDVYNDTNLIVWEENGDVYTTVNEGKEVTDEEAGKEDDKTEEVVKSGWDKNADGTWSYYNNGAKATGWVQAGAWYYLNANGIMQTGWVNDNGTWYYCNASGAMQTGWLLDGSTWYYLQANGAMKTGWLNDNGTWYYLNANGSMAANTTVDGYKLGANGAWIR
>NZ_CP033249.1|WP_153739563.1|3445091_3446660_-|hypothetical-protein
MNKNIKRTVAMALTLSALATIEPASSINILGAQEANAATSDKIYFDSLRVSGAGNIKLSDSKTKYSIYVPKSQESATITIKKDRSSDVITSDSGDVDDSGSTCKIKVDLDEKGSTANEFEVTVKNDDSSKSRTYTLKIYRKNVSSDDDEDNDDIYLDSINLSAGSIDFSRKKAEFDVVVDKDVESIKIQAKPEDEDYKVEIGGEEVDEDSKWRTSVDLKTGKNVVEIYIEDEDDDDNPQRTYTLNIYRGTKPSSNTATGEIDTKQDEIYVKKLVLNDGDVPVTFDKRITSYDITVNKDLEDIIVKAEPEDNDDLVKINSSKADSNYRKRVALNPTGPTTIEIKVYNDYDDDEDDYEERIYNLNIKKAGTTTDSSQNNNNNSSNNNNSTNNNNTNVIPSAKVNQWVKNEYGLWQYNDALGKPLLNQWFKDGANWYYLNEYGIMQTGWIIQGSSWYYLNDAGIMQTGWVNDRGTWYYLNDNGTMKTGWHKDSNGKWYYLNEYGVMLSNVYVDSYRLGADGAMIK
>NZ_CP033249.1|WP_153739562.1|3443091_3444936_+|O-antigen-ligase-domain-containing-protein
MENLKKFCKEKSITFFFPIALVLTIVPLIVRMRISEPDEDTLKLYGSSANSDLFTQNKEICLIFLSAIILIIAITCFKKFYEKKDKLINIMIICSLIFLGFTFLSTLFSKYKHVAFWGIYDRSEGFITIACYILLFIYSIYTFKKTEEFKFILIPILILVYINGFLGLFQFFGSDLIKTSLGGLIAIPSSYNIDPSKLSLAYESGTIYGTLYHYNYVGSFTALVLPILFGACVIEDDIFLKLLSMGGSLVGLWLLFGSTSRAGIIGFGAIIVFACIFFGKLLLKKKKALLITLACLAVFAVGLNFATSGKIFRRIPSLVSDGLSLFKSNTDFDYRDHIPVKNIEHIDNNIVLTLPTDTLTISFENNDYVFRNSKNEVVDYKSEFNSKIKAYDYTTTDANFSNISFRSGKIKSKTKNDGLMLILNGSNEFMFITRDDNSMHLVDPKTLEEIDLDFPKTIGFNGKEKLASSRGYIWSRSIPLLKDTLILGSGPDTFSFDFPQHDLLGKFYAYGTTNMIISKAHNLFLQIGLNNGVVALIAFVILIMVYIVDSFKLYALKNKYDEKQILGSILALSVIGYLFTGLFNDSVICVAPIFWIILGVGAAVNFINKKAENK
>NZ_CP033249.1|WP_153739561.1|3442614_3442929_-|nucleotidyltransferase-domain-containing-protein
MNADQFRIELDNIKNQMVNKFNPKEIVLFGSLAKGTFRSNSDIDLCIIKDTDNKRDLITKIYTEIDCNVPYDIVVYTISEWEKFKNDKDTFVYSIIKNGVKIYG
>NZ_CP033249.1|WP_153739560.1|3442226_3442622_-|HEPN-domain-containing-protein
MVDTLRYRDWIDKSERDIKSAKILKEHDCGNDVVAFHCQQAIEKILKAYLIIKGDGVVSGHSLLYLCKLAQGHDVTFKKYIKDCGFANQYYIETRYSADSLLIVSDYEADECVKIAEEIYNYVMSIISNKQ
>NZ_CP033249.1|WP_043852421.1|3440753_3442175_+|undecaprenyl-phosphate-glucose-phosphotransferase
MIKENQNLLNKINAFSDIFILFLSMILSYFIRFKLFYHDEFYITLHTYLRFTLFMVPVYIVLYIFFNLYDPIRTSFFSKECSKVIKSNLILITIALSSLFVFKFVHISRLVIVIFYFVNTTLIIIKRGLLRKILSNLRKKGLNLKHVLIVGAGKTASEYLDVIQNNKTYGYNYVGYVSNDSGFYGEKLGDYSQLLDILFEYKFDEVVCALDLKDAEYIEKIVSDCEKSGTKISIIPFCYKYIPSQPYIDQIGNLPLINIRRIPLDNIGNAFMKRTLDILGSLCLILLTSPIMIITAIIIKCTSKGPIIFKQERVGLNKSIFTMYKFRSMKVNSKETTGWSTNNDPRKTKFGSFIRKFSIDELPQFFNVLKGDMSLVGPRPELPHFVDEFKDEVPLYMVKHQVKPGITGLAQINGFRGDTSIKKRIEFDIHYIESWSILLDIEIIFKTAFKGFKNNEKLIITNKEISQDESIKS
>NZ_CP033249.1|WP_043852422.1|3439370_3440450_-|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MKVTAVIMAGGKGERFWPKSRKSLPKQFLSLTDDGKTMIQLTIERLKKIVDIDDVYIVTNKDYRDLVIEQINGIPEENILLEPMAKNTAPCIGLAAMHIKKKYKDAVMVVLPSDHLIKYNEIYIDTLKEAVEVAEEDKNLITIGITPSYPETGYGYINFGRDENDIERNNLYRVKRFVEKPNLDTAKEYLASGRYLWNSGMFVWKSSTILENFQKLMPDMYEGLNKIYETIGSDEEESILQREFAKFKGESIDYGIMERAGNIYTIPGSFGWDDVGSWLSLERINRTNDDGNVIKGNVITINSKNSIIQAQDKLIATIGIDDLVIVDTDDALLISNKSNTQEVKKVIENLKICNRYEYL
>NZ_CP033249.1|WP_043852423.1|3438537_3439311_-|ABC-transporter-permease
MKSLKELYNYREMLFNLVKKDLRTRYKGSVLGFFWTFLNPLLQLLVYTLVFSVILKSDIPNYYIHLFVALVPWLFFSTSLTASSTAIIGNKDLIKKIYFPRIIMPMAVVNGAFMNMLFTMIVVFCVLIFSGIGISKYIILLPIIMILEYLLVLGFAFVVSALNVYFRDLEHILGILTMAWMYATPVLYSIDIVPEKLKGIFELNPMTPIVVAFRDILYFQKMPDLSHMSLILFWSIAFIILGYLIFQKLQRGFAEEL
>NZ_CP033249.1|WP_043852424.1|3437289_3438534_-|ABC-transporter-ATP-binding-protein
METVIKVKNIWKDFKIYYDKGSTLKEKILFKNRNRHEVHTVLRGVNFEIKRGEVVGLIGENGSGKSTLLKLMTRIIYPNKGTIEIKGKVSSLLELGAGFHPDMTGRENIYTNASIFGLKKSEIDERLERIIEFSELGEFIDNPVRTYSSGMYMRLAFSVAINVDADILLVDEILAVGDASFQAKCFNKMQEIKAEGKTIVIVSHDTGSIERLCDRAIWIDQGIKKKDGLPHDVIALYLDKIMNKDIHENTDENEKVEKNSNDKHEKIVNKNENRTGNRYLEIKNIKMADYSTGKEQYNFKCEDKVKIEVQYIRNNKKIYDSVVGIGIFRQDGLNCYGTNSFIDNSEKIKIKDEGVIEILLDPIQLLEGVYTLDIALHDEYGKPYDYIRKVKSFSIYSSIKDCGVVRIKHKIFAK
>NZ_CP033249.1|WP_153739559.1|3436148_3437252_-|methyltransferase-domain-containing-protein
MDKDIFEIDLDDINVEDIMKQIREKIRKQGIVDEEINLNNTIEEHEMLNDYLSMVNNTCSVILDKEIKSHRRFIGKIIILFKRIVRKSIHWYIYPIVEQQNEFNSYTTRTLNSLVKNLDIINNKVTELEKEREEREEREEREKKLREEKMNFNYLKFEDKFRGSQEEIENKLKGYLEYFKGKSNVLDIGCGRGEFLELLKENNINAKGIDIESDMISICNKKDLNVEKIDALEYLKKLDDESLDGIIMNQVIEHMEPKYLCNLIEVANKKLKTGSFLVAETINPQSLIVFTEAYFMDLSHKRMIHPYTIQFLLESNGFKEASIKYMNKVEDLSIPQSDMFPDEFNKAINKLNDVVYGYRDYAVIGRK
>NZ_CP033249.1|WP_153739566.1|3451039_3451588_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MRKSFNKAATLLLSLAIMNVIFPVNAAEKKQYETNIEVENNKLQVDDEGNAVLELVCDSNSGFVKNNGKTEFYDVSGRQAKSSWINISGKWYYFDLNGIMVTGWQRISNKWYYFLEDGSKVTGWIMDEGHWYYLGEDGMMKSSQWVNIDGSWYYFNEKGIMEKDTIIDGFKISSNGISELKL
>NZ_CP033249.1|WP_002581975.1|3451868_3453452_-|IS1182-like-element-ISClbu1-family-transposase
MNTNNIIPMHQIGFPINIENIISDSDSVRVLYDVMEGLDYSELNRTYSTIGRNPALLPKTMFAIIVYGYMEGIYSSRALEKACKRDINFKWLLQGQLPPGHNSIDRFRRERLAGCIENLFNQLVKKLRELNEIQFKNIFIDGTKIEASANRYTFVWKKSIDKFEDRLQKKIKESLIKMNHDLNLCLIITNAKISVQDANYILDSIRIMIEANNIEFVYGKGKRKSKFQRYTEQLNEFIEKQNKYNEYNSIFNGRNSFSKTDHDATFMHMKEDHMKNGQLKPAYNIQIGVEGEYIVGVDISSERSDQLTFIPFLDRLEKNLNQKYESVTADAGYESEENYAYLESKKQEAFIKPANYEKSKTKKFKSDISKKENMYYNTDEDYYICASGKKMLLKGTKKKKTKSGYETTVSIYECEDCDGCEYKSKCTKAKGNKQIHVAKNFMRLRTNSLKNITTPKGILLRMNRSIQVEGAFGVIKQDYGFRRFFMRGNIKVRTEFLLMAFGYNVNKLYHKTIQNRNGELLHKQQAS
>NZ_CP033249.1|WP_153739567.1|3453584_3455447_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MFKRSSKMTALLVAAAAVVSIVPASASERLGTKDGTIDNARAYEGGYVYDGYRTDDDDAALYYNNGSKDVNTDEDEDYDDYTLERYGDKYATVKDGSDEYLLDLSNGKIDDEETLEDKADNAKNKLKSKINKEDRYVFFKDGENDFSKEDDKVVANTNSFARVLSDKYGEVWYQFSAAGDEDAIKRTTGAAVNGEVGYYQGFSNDSGKYIDVTQDCNIYAYDTDKDKTVKIEEYGKTYSANNLMAKLDSVTPISQDKDNLYVVAKVVISGDKQKETTQYYLQKISKSQGDKKDGGYLPKETTSYLLNVKMDEYSDNRLYDDGDSSDAADVIMSYVDGSTFDDGVCKNIEVIDGNVYATLVKDSKIKMFKIKLKKDKLDVTEAVDKKGDSKVKDVDVYTAKKDSDWDHDVVDAATSKEGERYSIDADGNTWILDKGKILKSEGTEFKEMYTCDRSIDKLDVYDENNLIAWSSDGDVYTTVAEGKKQTDEDAGVDTDKKDETPVVKAGWDKNADGTWAFYKDGAKVTGWLNDKGTWYYLDAAGTMKTGWVQAGSWYYLNASGAMQTGWVNDNGTWYYCNASGAMQTGWLLDGSTWYYLNANGSMAANTTVDGYVLGANGAML
>NZ_CP033249.1|WP_046057982.1|3455999_3457811_-|N-acetylmuramoyl-L-alanine-amidase-family-protein
MFRRSSKLTAMLVAAAAVVSIVPATAAERLGTKEGNITHAAAFNGGYIYDGYRTDDDDSALYYNNGSKDVNVDEDEDYDSYDLNRYGTKYAIVKDGSDEYLVDLSTGKIDDEETLQDKLDNATNKLKSKLNKTDRYDNDFVNGKVEKILNNKYGEVWYQYSAKGDSDVEKRMTTSAAVEGYVGFTDGTGKYVDVSQTANMYIYLPAAQIENASKGKTVKFEEYGDENDGVTVKLDKVTPVSQDKDYIYAVAQVTVSDKDNKAVAGIQSTQYFFQKISKDQGDKKDGAYLPKSVASYQLDTSKIYDNGDMKDATNVLLAAAKYDPADKGVGKDGDGREVVNVEVKDGTIYATSKDSGKVKVWKLKFKKDKVDANAVLDEKKNEKVDSYVVKKDGDGDHDIVNGAVSIDAAGNTWALDKGVVLKADGTDFKEIYTIDRSLDHLDVYDEKNLIAWADEDVYTTVSEGKKQTEADAGVDEDKKDETPVVKAGWEKNTDGTWAFYKDGAKATGWLNDKGTWYYLDAAGTMKTGWVQAGAWYYLNASGAMQTGWVNDNGTWYYCNGSGAMQTGWLNDNGTWYYLNANGSMAANTTVDGYVLGANGAWVK
>NZ_CP033249.1|WP_046057983.1|3458383_3460219_-|cell-wall-binding-protein
MNKRIKKIIALTVAFSAVTTIAPKTFLGLTSKPAYAASYTARNGELTSLVIKSTNGDKLSLKDGYNGDTVKLSDEKEYFVKLTDDSEGIVINAEAKGSDRIVRIFLTDDSDATAYKPGDKLYLGKGNTTVYVRTYASLSDFRQAKDKDKDVSICEEEYEVNVKKTTGSSYEDTTQDPVYLKDLSLNKGDITFLKQRTSYNIKVASSVNEIKITAEPEDDSSRVRIDGSLVDEDDNYRKTISLDKGKNEIKIKVTDDKDNQRVYTLNITRGSSSDGDSQGDVYLSSLELDEADLDFEEDKTSYEVDVDEDVSKILVTAEPEDEEYLVTINGSEVNSGDEYEKKVSLSKGKNTITVVVEDEVEDAKRTYKVTVNRGTVKDDEDDKEDTDDKNDNSSDDKNSVGWVKVDNDWKYRGEDGKFYVNKWLYDKEQGVYCYLKEDGFRATGWLQEGGNWYLLDSKGAMLTGWQYTGGQWYYLQSSGAMKTGWLKEEKTVTVEDTSTATDKKEDEKTSTSGSTNKTDTSKTDDKKEETTAKTKKVETWYYLQANGTMKTGWLLDNDKWYYMNLSGAMQTGWVIDNNSKYYLDQSGVMATGTKTIDGKEYKFTTSGALIS
>NZ_CP033249.1|WP_002582425.1|3460650_3461841_-|hypothetical-protein
MNKNLKKVIALTLAVNAIALIEPAKEISIFTEAAHAAKYDDPLLSDLKVSGYDVDFDKETYSYSIKVDKDVDQITVTAKPEDSAYEVSVNGDDAKEDDKYKVKVDVKQGKSTITIRVKDEEHDLKTTYELEVIRGSASYGEDLDEDDVYLDNITLSAGKINFSSKVTEYTVSVDDSVRYLDIKAKPMDSDEEYVEINGEEAEEDDDYEQTVTLKDGKNKITIRIENSEKSKKYILNVYKGVEPPKKDDSDEDEVKEDSNNNNQNSNNNNSSQYKNQWVTTQGIWLYYDENGNMMKNQWFNDVNAKKSYFLNENGVMVTGWLQKDGNWYYLNEDGSKHIGWKFVMGLWYYLDGEGVMKTGWIQDANGKWYYLNSNGAMASNTTIGGYKLGADGAWIK
>NZ_CP033249.1|WP_070779557.1|3461936_3463178_-|PspC-family-transcriptional-regulator
MNKNIKKIIAMTLTLCAVSAVCGVKNLNLSGEGTVAAFASDKSSLNLESISLSTGKIDFSSDVTSYKVYYNKAVKNIDIKVSPEGSDKRIRVTINDESVSSDDSYKKNFKLSVGENIFKIKIENRDDESQSKTYTLKAYRGTDENDQEIEQDLYINYLTINGKEMSLSKDKKVYDYKVDKDVKEAKIVIEPDQKYYTVKIGDNTYEGEESIKKTFTLTEGKNEIKIKLTDGEDEEKKQRTYTLNIYRGVDIPTSSTTTNNNTTSTGNTTTNTGNNTGTNNSTSTGTTNSSSSTTNTVSNSGKWQQNSAGKWYYVDSNGNAAKNKWFFVQGDGTMATGWVSFGGNWYYLNDDGTMATEWLNNGGKWYYLGSDGAMKTGWVQLSGNWYYLYSDGTMASNTTIDSYKLGSDGAWIK
>NZ_CP033249.1|WP_153739568.1|3463601_3464933_-|hypothetical-protein
MNKNVRHLIAAALVISAFSAVAPANIFNLGVIEANASTYSGASNGQLKSLSVYRSTGKEAQLYSNLAATKETELTSSTDYYIDLKGSDGVELDAEVEGDDYVVKVFKSSDKDAEGYDPSDLGLVPIDSGSTKLYLRTYRSEDGYKDAWDDGNVKKCLKTYTLHISKDNVNSDEEDDVEYPYLSSIYLSDGSINFTKSKTSYKANVDEDVKQILVRAKPQDDDDLVEINGDSVDEDGDYEKKVSLDKGENTIEITVENDDETTTYTIVVNRGGKSSNSSDEKDSTNIITGSDSFLYNSGTMNSWVSKNGKYMYMDGTGQPLKNKWWFDVSSASDYYFDKDGYAQTGWAQINGKWYYFDNSGKMQKGWISNDGKWYYLNVSGAMVTGWYQDAGKWYYLNSDGSMKTGWLNDNGSWYLFNSDGSMVTGNVLVDGVQYSFASNGVMI
>NZ_CP033249.1|WP_002582428.1|3465867_3466095_+|hypothetical-protein
MTHKDKPYLPKVRTDYHPSNSDCQSSTGVGQTTNIPNPASDSIVVNNIASQEFDYTQDLMDINDFSQNSKHTKKY
>NZ_CP033249.1|WP_153739569.1|3466413_3468198_-|MBL-fold-metallo-hydrolase
MHNIKKLLMTISMTLAFSCSLLSTGAYAVSNKTSSDVSSESTQKTDDKNSTSNSDKNSSKTDKKEDKKNQDSSTIKNEDIVDGEEQDETSTKDDEVIKVEIVPHWENINEKLHYVTKDGIIEEEGWFKEKDENPDADNDNEYYLDENHAAVTGWNKIGGQWYYFNEAGVKQTGWQLINYEWYHLDKNGIMEKGWIKDDGAKYYLSDAGTMVVGKKYIDDKWYLFANDGKLQTGFYTYKGKDYYSDKDGVMVTNQWIKTKNYQYYAKADSSIAKGNIIIDGKLQVFDNNGRFIESEDADNYLFVKYLSVGNADCQFIRLPNGETALIDTGDVTTREQLVNFLNEQKLRKKGGKKLIDYVIITHGHSDHIGGLAAVLDNFEVGKIYMPKNAAMQNWYSGLKVNDEVSQADIDMLKYDYQIYKEAAKAVKDNGLKFINPTPGQYIDSNEILQFVQSGKDFGPIGSQKHMAEYWGINENSAIVYLNYGDFQGLFAADMEWTSEKDFWVSDLLDGKKVDLLKVPHHGYNTSSTGDFLKYVNAPVGIVSRAEDSIDKNTAFNNLVNNGVMLYETSQSKNGGISVYATEDNWSMEDASKDN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

491159 : 544025

Clostridium_phage(30.0%)

protease,coat,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002582329.1\|491159_492179_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.5e-65	41.6
WP_043853365.1\|492187_493192_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_002582327.1\|493306_494533_+\|protease	trypsin-like serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	2.0e-21	27.2
WP_003412645.1\|494668_494986_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA
WP_002582325.1\|495065_495425_+	hypothetical protein	NA	NA	NA	NA
WP_043853364.1\|495546_496689_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002582323.1\|496758_497883_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_035764142.1\|498030_499047_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_080630488.1\|499018_499795_+\|coat	spore coat protein	NA	NA	NA	NA
WP_003429682.1\|499974_501009_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_002582319.1\|501168_502290_-	glycosyltransferase family 4 protein	A0A2K9VGK0	Pontimonas_phage	5.0e-06	40.3
WP_002582318.1\|502398_503397_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_002582317.1\|503542_504406_+	sporulation peptidase YabG	NA	NA	NA	NA
WP_002582316.1\|504694_504937_+	hypothetical protein	NA	NA	NA	NA
WP_002582315.1\|505313_506876_+	DUF3794 domain-containing protein	NA	NA	NA	NA
WP_043853363.1\|507005_507821_+	cyanophycinase	NA	NA	NA	NA
WP_043853362.1\|507823_510433_+	cyanophycin synthetase	NA	NA	NA	NA
WP_002582312.1\|510521_511364_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_002582311.1\|511439_512123_+	stage II sporulation protein R	NA	NA	NA	NA
WP_043853361.1\|512137_513127_+	DUF814 domain-containing protein	NA	NA	NA	NA
WP_002582309.1\|513174_513585_+	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_003412658.1\|513787_514099_+	hypothetical protein	NA	NA	NA	NA
WP_002582307.1\|514281_515889_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.5e-152	51.4
WP_002582306.1\|516171_517707_+	transcription termination factor Rho	NA	NA	NA	NA
WP_002582305.1\|517742_518855_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA
WP_002582304.1\|519056_519266_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_002582303.1\|519668_520256_+	thymidine kinase	A0A249XXF6	Clostridium_phage	9.4e-57	57.4
WP_035764129.1\|520277_522035_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_002582301.1\|522269_523352_+	peptide chain release factor 1	NA	NA	NA	NA
WP_002582300.1\|523466_524054_+	hypothetical protein	NA	NA	NA	NA
WP_002582298.1\|525141_525591_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA
WP_002582297.1\|525729_526359_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_002582296.1\|526377_526872_+	cytidine deaminase	A0A2H5BMD7	Streptomyces_phage	2.0e-15	39.8
WP_002582295.1\|526968_528117_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	9.8e-26	27.7
WP_002582294.1\|528352_529534_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_002582293.1\|530392_530752_+	hypothetical protein	NA	NA	NA	NA
WP_002582292.1\|530770_531451_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_002582291.1\|531482_531698_+	ATP synthase F0 subunit C	NA	NA	NA	NA
WP_002582290.1\|531749_532229_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_002582289.1\|532231_532771_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
WP_002582288.1\|532781_534296_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_002582287.1\|534471_535320_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_002582286.1\|535336_536728_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_002582285.1\|536742_537144_+	ATP synthase F1 subunit epsilon	NA	NA	NA	NA
WP_043853360.1\|537400_538042_+	hypothetical protein	NA	NA	NA	NA
WP_003429670.1\|538064_539327_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_002582282.1\|539581_540652_+	stage II sporulation protein D	Q2XU88	Pseudomonas_phage	1.2e-33	35.4
WP_002582281.1\|541141_541903_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_002582280.1\|542059_542314_+	sporulation transcriptional regulator SpoIIID	M9Q261	Clostridium_phage	1.1e-17	57.3
WP_002582279.1\|542393_543428_+	rod shape-determining protein	NA	NA	NA	NA
WP_003429668.1\|543500_544025_-\|protease	spore protease YyaC	A0A0A8WIQ6	Clostridium_phage	3.9e-22	37.7

DBSCAN-SWA_2

859119 : 923089

Bacillus_phage(42.86%)

transposase,integrase,coat,tRNA

attL 883801:883832|attR 923752:923783

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002581947.1\|859119_859782_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_002581946.1\|859954_860899_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_153739133.1\|860907_861669_+	RsmE family RNA methyltransferase	NA	NA	NA	NA
WP_003408763.1\|861673_863074_+\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_002581943.1\|863235_863580_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_002581942.1\|863715_863892_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_002581941.1\|863924_864377_+	GatB/YqeY domain-containing protein	NA	NA	NA	NA
WP_002581940.1\|864572_864860_+	sporulation protein YqfC	NA	NA	NA	NA
WP_003429248.1\|864856_865987_+	sporulation protein YqfD	NA	NA	NA	NA
WP_153739134.1\|866017_868150_+	HDIG domain-containing protein	NA	NA	NA	NA
WP_002581937.1\|868146_868653_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_002581936.1\|868737_869439_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_002581935.1\|869804_870695_+	GTPase Era	NA	NA	NA	NA
WP_003429242.1\|870698_871448_+	DNA repair protein RecO	NA	NA	NA	NA
WP_002581933.1\|871454_872087_+	DUF4342 domain-containing protein	NA	NA	NA	NA
WP_002581932.1\|872271_872910_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_053359037.1\|873017_875645_+	pyruvate, phosphate dikinase	A0A2D2W2B1	Stenotrophomonas_phage	4.6e-87	40.3
WP_053359036.1\|875865_876912_-\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_003429235.1\|877268_878294_+	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_002581928.1\|878503_880279_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.4e-57	33.8
WP_002581927.1\|880315_881425_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	4.1e-37	35.8
WP_024040180.1\|881533_882226_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_046057886.1\|882238_883030_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_027637256.1\|883092_883440_+	hypothetical protein	NA	NA	NA	NA
883801:883832	attL	NA	NA	NA	NA
WP_046057887.1\|885072_885258_+	hypothetical protein	NA	NA	NA	NA
WP_046057888.1\|885300_886956_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7Y2	Bacillus_phage	4.7e-05	26.7
WP_046057889.1\|886955_887933_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_083319660.1\|887925_888636_+\|integrase	tyrosine-type recombinase/integrase	A0A0E3T6D9	Bacillus_phage	1.1e-06	26.9
WP_083319659.1\|888474_889077_-	hypothetical protein	NA	NA	NA	NA
WP_153739135.1\|889180_889531_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_082076432.1\|889532_889799_-	hypothetical protein	NA	NA	NA	NA
WP_046057893.1\|891403_891790_+	hypothetical protein	NA	NA	NA	NA
WP_153739136.1\|893393_893531_+	hypothetical protein	NA	NA	NA	NA
WP_046057894.1\|893883_894084_-	YvrJ family protein	NA	NA	NA	NA
WP_046057895.1\|894185_894701_-	hypothetical protein	NA	NA	NA	NA
WP_141759797.1\|894923_896049_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.5e-87	57.8
WP_046057897.1\|896274_896517_+	hypothetical protein	NA	NA	NA	NA
WP_046057898.1\|896599_897172_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_153739137.1\|897334_898237_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_046057922.1\|901202_901991_+	response regulator transcription factor	NA	NA	NA	NA
WP_046057900.1\|901980_903225_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_081043907.1\|903200_903320_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA
WP_053359033.1\|903279_903882_-	accessory gene regulator B family protein	NA	NA	NA	NA
WP_082076430.1\|905522_906467_-	DMT family transporter	NA	NA	NA	NA
WP_046057902.1\|906830_907862_+	radical SAM protein	NA	NA	NA	NA
WP_046057903.1\|907858_908704_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_046057904.1\|908735_909917_+	MFS transporter	NA	NA	NA	NA
WP_046057905.1\|909940_912646_+	hypothetical protein	NA	NA	NA	NA
WP_052707852.1\|912741_912993_+	hypothetical protein	NA	NA	NA	NA
WP_053359030.1\|913089_918189_+	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	1.6e-64	30.0
WP_046057908.1\|918217_919264_+	hypothetical protein	NA	NA	NA	NA
WP_046057909.1\|919417_920206_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_153739138.1\|920479_921196_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_046057911.1\|921195_921885_+	thioesterase	NA	NA	NA	NA
WP_052707853.1\|921886_922135_-	hypothetical protein	NA	NA	NA	NA
WP_053359028.1\|922498_923089_+\|transposase	transposase	NA	NA	NA	NA
923752:923783	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1136580 : 1222476

Clostridium_phage(21.62%)

terminase,protease,capsid,tail,portal,integrase,tRNA

attL 1132261:1132280|attR 1186386:1186405

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1132261:1132280	attL	NA	NA	NA	NA
WP_153739170.1\|1136580_1137783_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_153739171.1\|1137743_1138412_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_153739172.1\|1138435_1139314_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_153739173.1\|1139353_1140829_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_002581007.1\|1140924_1141893_+	porphobilinogen synthase	NA	NA	NA	NA
WP_002581006.1\|1142115_1143405_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_153739174.1\|1143714_1147518_+	mannanase	NA	NA	NA	NA
WP_035762816.1\|1148063_1149131_+	spermidine/putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002581003.1\|1149292_1149850_+	DUF3867 domain-containing protein	NA	NA	NA	NA
WP_002581002.1\|1149931_1150906_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_002581001.1\|1151176_1152115_+	hypothetical protein	NA	NA	NA	NA
WP_002581000.1\|1152321_1153779_+	threonine synthase	NA	NA	NA	NA
WP_003424997.1\|1153793_1154690_+	homoserine kinase	NA	NA	NA	NA
WP_002580998.1\|1154689_1155127_+	ACT domain-containing protein	NA	NA	NA	NA
WP_035762811.1\|1155202_1156252_-\|integrase	site-specific integrase	Q8SBN2	Clostridium_phage	1.7e-141	67.5
WP_035762809.1\|1156369_1156867_-	ImmA/IrrE family metallo-endopeptidase	A0A1L2BY64	Clostridium_phage	2.7e-36	48.1
WP_035762807.1\|1157053_1157749_+	hypothetical protein	NA	NA	NA	NA
WP_153739175.1\|1157765_1157906_-	hypothetical protein	NA	NA	NA	NA
WP_035762803.1\|1159367_1159937_-	hypothetical protein	NA	NA	NA	NA
WP_035762802.1\|1160004_1161069_-	DUF4236 domain-containing protein	Q332B9	Clostridium_botulinum_C_phage	8.9e-05	44.9
WP_035762801.1\|1161170_1161515_-	helix-turn-helix transcriptional regulator	A0A1L2BY72	Clostridium_phage	8.0e-32	63.2
WP_035762800.1\|1161666_1161864_+	helix-turn-helix domain-containing protein	A0A0B5D0D3	Listeria_phage	7.1e-09	52.5
WP_035762799.1\|1162001_1162232_+	hypothetical protein	NA	NA	NA	NA
WP_035762798.1\|1162232_1162889_-	hypothetical protein	NA	NA	NA	NA
WP_035762796.1\|1162955_1163390_+	helix-turn-helix transcriptional regulator	A0A1L2BY71	Clostridium_phage	1.2e-27	47.5
WP_035762794.1\|1163402_1163579_+	transcriptional regulator	Q8SBM7	Clostridium_phage	1.1e-13	66.7
WP_035762792.1\|1163805_1164561_+	ParA family protein	H7BUL8	unidentified_phage	1.8e-28	32.2
WP_035762790.1\|1164545_1165616_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_141912273.1\|1165660_1166602_+	helix-turn-helix domain-containing protein	A0A1L2BY83	Clostridium_phage	7.5e-40	45.4
WP_035762787.1\|1166620_1166776_+	hypothetical protein	NA	NA	NA	NA
WP_035762785.1\|1166789_1166978_+	hypothetical protein	NA	NA	NA	NA
WP_035762784.1\|1167086_1167275_+	hypothetical protein	NA	NA	NA	NA
WP_080646809.1\|1167292_1167424_+	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_153739176.1\|1167575_1168277_+	hypothetical protein	NA	NA	NA	NA
WP_153739177.1\|1168416_1168728_+	hypothetical protein	NA	NA	NA	NA
WP_035762772.1\|1168848_1169163_+	hypothetical protein	NA	NA	NA	NA
WP_153739178.1\|1169274_1169514_+	hypothetical protein	NA	NA	NA	NA
WP_153739179.1\|1169549_1169966_+	hypothetical protein	A0A141DZP9	Streptococcus_phage	1.4e-09	40.4
WP_002580972.1\|1170003_1170237_+	hypothetical protein	NA	NA	NA	NA
WP_002580971.1\|1170356_1170686_+	hypothetical protein	NA	NA	NA	NA
WP_035762766.1\|1170859_1171258_+	hypothetical protein	M9Q1J7	Clostridium_phage	6.2e-12	38.0
WP_002580969.1\|1171289_1171514_+	hypothetical protein	NA	NA	NA	NA
WP_002580968.1\|1171510_1172080_+\|integrase	tyrosine-type recombinase/integrase	A0A0S2GLG4	Bacillus_phage	4.4e-43	52.5
WP_035762763.1\|1172286_1172706_+	hypothetical protein	NA	NA	NA	NA
WP_035762761.1\|1172885_1173467_+	hypothetical protein	A0A2K9V441	Faecalibacterium_phage	6.7e-15	31.9
WP_153739180.1\|1173438_1175265_+\|terminase	phage terminase large subunit family protein	A0A2K9V3X4	Faecalibacterium_phage	8.5e-173	52.2
WP_035762755.1\|1175309_1175543_+	hypothetical protein	A0A0C5AEE0	Bacteriophage	3.9e-14	47.4
WP_035762753.1\|1175553_1177104_+\|portal	phage portal protein	A0A0C5AJ48	Bacteriophage	1.2e-167	58.5
WP_057089070.1\|1177063_1178275_+\|protease	Clp protease ClpP	A0A0C5AEN1	Bacteriophage	5.9e-37	32.7
WP_035762750.1\|1178274_1178628_+	hypothetical protein	NA	NA	NA	NA
WP_035762748.1\|1178650_1179697_+\|capsid	major capsid protein	A0A0C5ABI0	Bacteriophage	2.0e-78	41.7
WP_035762746.1\|1179706_1179937_+	hypothetical protein	NA	NA	NA	NA
WP_035762744.1\|1179923_1180238_+	hypothetical protein	A0A0E3Y618	Fusobacterium_phage	5.8e-05	33.7
WP_035762742.1\|1180237_1180816_+	hypothetical protein	NA	NA	NA	NA
WP_035762739.1\|1180817_1181336_+	hypothetical protein	NA	NA	NA	NA
WP_035762736.1\|1181348_1182785_+	hypothetical protein	H7BVZ4	unidentified_phage	5.4e-74	36.0
WP_153739181.1\|1182785_1183316_+\|tail	phage tail protein	A0A0C5AJ56	Bacteriophage	1.8e-19	34.7
WP_057089066.1\|1183373_1183712_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_153739182.1\|1183877_1186076_+	hypothetical protein	A0A218KCH0	Bacillus_phage	2.0e-43	46.1
WP_052501796.1\|1186068_1186281_+	hypothetical protein	A0A2K9V2S8	Faecalibacterium_phage	7.6e-09	43.8
WP_153739183.1\|1186268_1187198_+	hypothetical protein	H7BVZ1	unidentified_phage	2.0e-29	30.7
1186386:1186405	attR	NA	NA	NA	NA
WP_057089061.1\|1187197_1187440_+	hypothetical protein	NA	NA	NA	NA
WP_153739184.1\|1187439_1187991_+	hypothetical protein	NA	NA	NA	NA
WP_057089056.1\|1187996_1188314_+	hypothetical protein	NA	NA	NA	NA
WP_057089054.1\|1188303_1189458_+	hypothetical protein	A0A059WFM2	Vibrio_phage	1.7e-49	31.6
WP_057089052.1\|1189457_1190111_+\|tail	phage tail protein I	A0A0C5AJ63	Bacteriophage	5.2e-24	39.8
WP_153739185.1\|1190114_1191500_+\|tail	phage tail protein	A0A1V0DZY8	Clostridioides_phage	1.2e-38	51.0
WP_043852938.1\|1191516_1191810_+	hypothetical protein	NA	NA	NA	NA
WP_153739186.1\|1191825_1192011_+	hypothetical protein	NA	NA	NA	NA
WP_057089049.1\|1192101_1192311_+	hypothetical protein	NA	NA	NA	NA
WP_153739187.1\|1192358_1193114_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A2H4J7L8	uncultured_Caudovirales_phage	2.6e-120	82.1
WP_035762714.1\|1193223_1193499_+	hypothetical protein	A0A2H4J1Q4	uncultured_Caudovirales_phage	1.2e-17	48.3
WP_057089047.1\|1193515_1193806_+	hypothetical protein	A0A0A8WF70	Clostridium_phage	3.1e-13	45.2
WP_153739188.1\|1193854_1195492_+	hypothetical protein	NA	NA	NA	NA
WP_153739189.1\|1195985_1198166_+	PspC family transcriptional regulator	NA	NA	NA	NA
WP_153739190.1\|1198801_1199758_+	hypothetical protein	NA	NA	NA	NA
WP_002580933.1\|1199845_1200643_+	RelA/SpoT domain-containing protein	NA	NA	NA	NA
WP_002580932.1\|1200911_1202006_+	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_002580931.1\|1202021_1202882_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002580930.1\|1203121_1204270_+	cysteine desulfurase	A0A1X7QGF3	Faustovirus	6.6e-30	28.1
WP_002580929.1\|1204269_1205427_+\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_002580928.1\|1205461_1206100_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_003407320.1\|1206451_1207585_+	ATP phosphoribosyltransferase regulatory subunit	A0A1V0SLE3	Klosneuvirus	1.1e-16	25.8
WP_002580926.1\|1207629_1208259_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_003425009.1\|1208439_1209738_+	histidinol dehydrogenase	NA	NA	NA	NA
WP_002580924.1\|1209724_1210762_+	histidinol-phosphate aminotransferase family protein	A0A142C026	Faustovirus	9.8e-17	24.1
WP_002580923.1\|1210784_1211372_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_002580922.1\|1211399_1212020_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_002580921.1\|1212016_1212733_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_002580920.1\|1212782_1213544_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_002580919.1\|1213572_1213902_+	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
WP_003414845.1\|1213935_1214262_+	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_153739191.1\|1214459_1215635_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0F7LAY0	uncultured_marine_virus	1.0e-25	25.2
WP_002580916.1\|1216041_1216236_+	hypothetical protein	NA	NA	NA	NA
WP_002580915.1\|1216331_1217147_+	hypothetical protein	NA	NA	NA	NA
WP_002580914.1\|1217233_1218517_+	trigger factor	NA	NA	NA	NA
WP_002580913.1\|1218677_1219283_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	2.2e-53	57.7
WP_003415254.1\|1219325_1220615_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.4e-144	62.4
WP_035761361.1\|1220802_1222476_+\|protease	ATP-dependent protease LonB	A0A1V0SHJ7	Hokovirus	3.0e-07	23.8

DBSCAN-SWA_4

1611813 : 1660244

uncultured_Caudovirales_phage(20.0%)

integrase,coat,transposase

attL 1618236:1618251|attR 1638062:1638077

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_153739248.1\|1611813_1612827_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_153739249.1\|1613781_1613979_+	hypothetical protein	NA	NA	NA	NA
WP_153739250.1\|1614023_1614557_+	hypothetical protein	NA	NA	NA	NA
WP_003426296.1\|1614799_1615069_+	hypothetical protein	NA	NA	NA	NA
WP_003426299.1\|1615156_1615300_+	hypothetical protein	NA	NA	NA	NA
WP_003426302.1\|1615362_1615632_+	hypothetical protein	NA	NA	NA	NA
WP_003426306.1\|1615948_1618573_+	DEAD/DEAH box helicase	NA	NA	NA	NA
1618236:1618251	attL	NA	NA	NA	NA
WP_003426309.1\|1619587_1619824_+	hypothetical protein	NA	NA	NA	NA
WP_003426312.1\|1620711_1621398_+	recombinase family protein	NA	NA	NA	NA
WP_003426316.1\|1621777_1623469_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_153739251.1\|1624498_1625380_+	hypothetical protein	NA	NA	NA	NA
WP_153739252.1\|1625447_1627220_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.0e-06	58.9
WP_024041083.1\|1628445_1629168_+	HAD family hydrolase	NA	NA	NA	NA
WP_070779669.1\|1629507_1630686_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003426331.1\|1630776_1631661_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_153739253.1\|1631671_1632718_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_002580535.1\|1632720_1633488_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.5e-14	24.8
WP_002580534.1\|1633489_1634194_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_153739254.1\|1634220_1634847_+	cytidylate kinase-like family protein	NA	NA	NA	NA
WP_003415137.1\|1635095_1635728_+	stage II sporulation protein M	NA	NA	NA	NA
WP_002580531.1\|1635819_1636698_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	7.1e-08	19.2
WP_002580530.1\|1636893_1637094_+	hypothetical protein	NA	NA	NA	NA
WP_002580529.1\|1637096_1637756_+	hypothetical protein	NA	NA	NA	NA
WP_057087455.1\|1637920_1638976_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.2e-07	47.4
1638062:1638077	attR	NA	NA	NA	NA
WP_043853075.1\|1639247_1640054_+	hypothetical protein	A0A2K9VH60	Faecalibacterium_phage	1.3e-24	35.2
WP_043853074.1\|1640121_1641636_-	sodium/proline symporter PutP	NA	NA	NA	NA
WP_002580525.1\|1641878_1642412_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_058142093.1\|1642433_1643063_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_002580523.1\|1643161_1644046_+	DMT family transporter	NA	NA	NA	NA
WP_003415617.1\|1644251_1644662_+	flavodoxin	NA	NA	NA	NA
WP_153739255.1\|1644686_1645322_+	DUF3793 family protein	NA	NA	NA	NA
WP_003409120.1\|1645746_1646271_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_153739256.1\|1646501_1647740_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.6e-51	50.3
WP_002580519.1\|1648024_1648270_-	hypothetical protein	NA	NA	NA	NA
WP_153739257.1\|1648280_1649882_-	recombinase family protein	A0A1L2BY67	Clostridium_phage	6.0e-106	41.7
WP_035763765.1\|1650098_1650284_+	hypothetical protein	NA	NA	NA	NA
WP_153739258.1\|1650403_1651843_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_153739259.1\|1651856_1652594_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.1e-30	39.0
WP_043853070.1\|1652918_1653779_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003426353.1\|1653907_1654222_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	4.9e-20	49.0
WP_153739260.1\|1654289_1655666_+	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	9.1e-103	44.4
WP_002580513.1\|1655682_1656180_+	hypothetical protein	NA	NA	NA	NA
WP_002580512.1\|1656209_1656548_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002580511.1\|1656643_1657876_+	redoxin family protein	NA	NA	NA	NA
WP_035763777.1\|1657917_1658688_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_035763780.1\|1658840_1659299_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_113886331.1\|1659429_1659828_-\|coat	spore coat protein CotJC	NA	NA	NA	NA
WP_024039853.1\|1659831_1660092_-\|coat	spore coat protein CotJB	NA	NA	NA	NA
WP_003406267.1\|1660106_1660244_-\|coat	spore coat associated protein CotJA	NA	NA	NA	NA

DBSCAN-SWA_5

2689140 : 2699168

Prochlorococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002579505.1\|2689140_2690649_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	1.8e-35	46.0
WP_003409633.1\|2690829_2691438_-	phosphoribosylglycinamide formyltransferase	R9S626	Prochlorococcus_phage	2.9e-24	38.0
WP_002579503.1\|2691425_2692430_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	7.7e-67	45.1
WP_002579502.1\|2692521_2693934_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-55	32.8
WP_002579501.1\|2694041_2694749_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SLB8	Cyanophage	2.1e-47	44.8
WP_002579500.1\|2694748_2695228_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.3e-27	43.7
WP_002579499.1\|2695421_2699168_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.2e-32	24.5

DBSCAN-SWA_6

2832410 : 2854539

Clostridium_phage(36.36%)

transposase,terminase,protease,capsid,tail,portal,integrase,head

attL 2830897:2830955|attR 2854678:2854736

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2830897:2830955	attL	NA	NA	NA	NA
WP_035761508.1\|2832410_2833178_-	DUF4428 domain-containing protein	X5JB37	Clostridium_phage	5.4e-36	37.2
WP_046057384.1\|2833301_2834171_-	N-acetylmuramoyl-L-alanine amidase	A0A142F1B8	Bacillus_phage	8.3e-09	33.3
WP_046057385.1\|2834237_2834525_-	hypothetical protein	A0A0A8WF70	Clostridium_phage	1.7e-11	40.7
WP_002581906.1\|2834539_2834773_-	hypothetical protein	NA	NA	NA	NA
WP_153739433.1\|2834953_2835628_-	hypothetical protein	NA	NA	NA	NA
WP_153739434.1\|2835907_2836036_-	XkdX family protein	A0A0A7S0E7	Clostridium_phage	5.2e-05	54.8
WP_153739435.1\|2836028_2836364_-	hypothetical protein	NA	NA	NA	NA
WP_153739436.1\|2836378_2837887_-	viral A-type inclusion protein	A0A1L2BYA7	Clostridium_phage	3.6e-52	74.1
WP_153739437.1\|2837902_2839591_-	hypothetical protein	A0A1L2BYA1	Clostridium_phage	7.1e-158	55.7
WP_153739438.1\|2839590_2840295_-\|tail	phage tail protein	A0A1L2BYA2	Clostridium_phage	4.3e-64	50.6
WP_153739439.1\|2840294_2843357_-\|tail	phage tail tape measure protein	A0A1L2BYA6	Clostridium_phage	1.2e-70	43.5
WP_153739440.1\|2843376_2843610_-	hypothetical protein	Q0H231	Geobacillus_phage	3.5e-07	54.0
WP_153739441.1\|2843572_2843920_-	hypothetical protein	A0A290GJX3	Caldibacillus_phage	1.2e-35	63.4
WP_046057389.1\|2843931_2844501_-\|tail	phage tail protein	A0A0U4JWV5	Exiguobacterium_phage	3.9e-60	62.4
WP_046057390.1\|2844502_2844832_-	hypothetical protein	A6XMK2	Bacillus_virus	6.7e-28	59.6
WP_046057391.1\|2844828_2845185_-	hypothetical protein	A0A290FZT5	Caldibacillus_phage	3.8e-21	50.0
WP_046057392.1\|2845177_2845498_-\|head	phage head closure protein	A6XMK0	Bacillus_virus	1.2e-18	45.3
WP_046057393.1\|2845494_2845782_-	hypothetical protein	A6XMJ8	Bacillus_virus	2.1e-33	70.0
WP_052707829.1\|2845793_2846078_-	hypothetical protein	NA	NA	NA	NA
WP_153739442.1\|2846091_2847501_-\|capsid	phage major capsid protein	A6XMJ6	Bacillus_virus	1.4e-122	64.2
WP_046057395.1\|2847490_2848081_-\|head,protease	HK97 family phage prohead protease	Q0H262	Geobacillus_phage	4.7e-72	72.5
WP_153739443.1\|2848064_2849303_-\|portal	phage portal protein	A6XMJ5	Bacillus_virus	3.1e-150	65.1
WP_153739444.1\|2849409_2849658_-	hypothetical protein	NA	NA	NA	NA
WP_153739445.1\|2849669_2851349_-\|terminase	terminase large subunit	Q0H264	Geobacillus_phage	8.9e-201	64.7
WP_085951511.1\|2851311_2852644_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	3.2e-28	42.9
WP_080646768.1\|2852798_2853158_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_035761600.1\|2853308_2853599_+	helix-turn-helix transcriptional regulator	A0A0A7S0F1	Clostridium_phage	1.6e-20	48.9
WP_035761603.1\|2853636_2854539_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	5.5e-32	27.6
2854678:2854736	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP033248

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP033248_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033248_1

882004-882115

Orphan

Consensus_repeat	Method
TTACTAAAATCACCGTTCGCAAGGGTAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033248_1

>merge|NZ_CP033248|1|882004-882115|CRISPRCasFinder
GACCAAAACCCACCGTTCGCGAGGGTAAAAAACAAAATTCAACTCCTTTTTACTATTATTTTTATTAAAAATTGCGTTTCGTGACTTGTATTTCCGTTCGCAAGGGTAAAAA

>NZ_CP033248|1|1|882004-882115|CRISPRCasFinder
GACCAAAACCCACCGTTCGCGAGGGTAAAA	AACAAAATTCAACTCCTTTTTACTATTATTTTTATTAAAAATTGCGTTTCG
TGACTTGTATTTCCGTTCGCAAGGGTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033248.1\|WP_002581764.1\|872924_873470_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223463
NZ_CP033248.1\|WP_070779587.1\|878132_879794_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP033248.1\|WP_035764612.1\|871472_871886_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_CP033248.1\|WP_153739005.1\|872009_872864_-\|thioredoxin-reductase	unknown	unknown	gnl\|CDD\|223566
NZ_CP033248.1\|WP_002581763.1\|873525_874002_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NZ_CP033248.1\|WP_033128234.1\|877101_877872_-\|cobalt-ECF-transporter-T-component-CbiQ	unknown	unknown	gnl\|CDD\|274139
NZ_CP033248.1\|WP_070779588.1\|876249_877092_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP033248.1\|WP_002581761.1\|874933_875680_-\|energy-coupling-factor-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181384
NZ_CP033248.1\|WP_003411363.1\|880080_881544_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033248.1\|WP_002581762.1\|874617_874932_-\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|179494

Protein	Function_ID	Function_description	E-value
NZ_CP033248.1\|WP_002581764.1\|872924_873470_-\|glutathione-peroxidase	gnl\|CDD\|223463	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones].	5.51449e-76
NZ_CP033248.1\|WP_070779587.1\|878132_879794_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.11455e-40
NZ_CP033248.1\|WP_035764612.1\|871472_871886_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	5.00874e-16
NZ_CP033248.1\|WP_002581763.1\|873525_874002_-\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	5.12289e-96
NZ_CP033248.1\|WP_033128234.1\|877101_877872_-\|cobalt-ECF-transporter-T-component-CbiQ	gnl\|CDD\|274139	TIGR02454, Uncharacterized_protein_MJ1089, cobalt ECF transporter T component CbiQ. This model represents the CbiQ component of the cobalt-specific ECF-type. CbiQ is now recognized as the T component of energy-coupling factor (ECF)-type transporters. The S component confers specificity (CbiM-N for cobalt systems), which CbiO is the ABC-family ATPase. In general, proteins found by this model reside next to the other putative subunits of the complex, identified as CbiN, CbiO, or CbiM. Note that the designation of cobalt transporter has been spread excessively among ECF system transporters with many other specificities. [Transport and binding proteins, Cations and iron carrying compounds].	3.95384e-35
NZ_CP033248.1\|WP_070779588.1\|876249_877092_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	1.31962e-97
NZ_CP033248.1\|WP_002581761.1\|874933_875680_-\|energy-coupling-factor-ABC-transporter-permease	gnl\|CDD\|181384	PRK08319, PRK08319, energy-coupling factor ABC transporter permease.	6.40713e-110
NZ_CP033248.1\|WP_153739005.1\|872009_872864_-\|thioredoxin-reductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	7.72969e-63
NZ_CP033248.1\|WP_002581762.1\|874617_874932_-\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	gnl\|CDD\|179494	PRK02898, PRK02898, energy-coupling factor ABC transporter substrate-binding protein.	3.26606e-24

>NZ_CP033248.1|WP_003411363.1|880080_881544_-|hypothetical-protein
MDKDDRLFKEDMIKLFKNVYEVLVKKEKFTDFYETLDNDLANLKDTGKREVIYKNLTNSIKRTKTRWLNKYVNGSNNSLSEDIEYAEHFYKRVLEGVYEPDKFVMIYGVNNIDEYKKKMFNELYTWRDNEDALLSSYKYIGTFQKRSITLAFRSDILKLYYDFLTNNAKSVITIPSVLSNFSIDTTNKKDYLKDDEKEFLDDNLSLEGTIDRLIVNKENQQKLLMKLEKQVYLRIEEGKDSLDIITQIALLKAIKQLNSLDTRIISHYYTHFYNIVADKSVDKYIGDLVSELGLSDSKKNTDAVIKSLLKIGSIRLESENYEGREIKGTLFEVSISERDGRKFAQVFLGGFLRTLIIMDSSFNFNKDVFDLLSNDAQQIAIWLQNRRLKMVLESEDFKDVIAIQRFTDAILMSTKSIYKKRDRIINALDELKQYKLIVKNYEYIKKNYEFVISYIELPESVIKKIKNKEFKTGELIEGQIHADYTVE
>NZ_CP033248.1|WP_070779587.1|878132_879794_-|HAMP-domain-containing-histidine-kinase
MKNIKNDLKVIGIIFLFCIMYSSIVREEFSILNILSIIDVLIIFCFVLYIISAVATYSLKLKYINNLYRYLSICFLSVGMLSFSYICFKKQIHINNGFENSCISIEILAAILESCYLIYCFSNYKNNINTKRFLAGTLLISICTIYICSALSILPLYEVDNLYIKSIILICFSICILLKIYLLRVIKKSGTDITESMALYLKMYMYLSIISIIIELNVYMNISSELIFIYYLIRALSSYCIVKIILVEILKTPQEYLYKNLVKKSEDLEATILELKKTIDDKNIIYKDYEKRTKHEEVKNEVLANISHEFKTPVNVIYSAVQTQDLIKNTANIEELLKYNKIIKQNCNRLTRLINNFIDTTRFEKENVKTEFTCENIVEITEYLTMCVVPFANSKKLNLIFDTSDEELYSLIDKELYDRMILNLLSNAIKYSRINGNIKVMIKDDNKFIKITIEDDGIGIDKYHLKDIFSIFERVDKSYSRNTEGSGLGLNIAKKIIDIHNGTISIESIKEKGTSVIVSIPKCSEKYVDNISHRLQDNTYVKYEVEVEMSDIY
>NZ_CP033248.1|WP_033128234.1|877101_877872_-|cobalt-ECF-transporter-T-component-CbiQ
MERKIDSYAYKSKLRKINPAFKVIFAFLTLLICIIADNIYVSLAIIVSMGFITIFKGGIKFHEYMSLMSIPVVFMILGSIAIAFGVSMSPIGDYNLHLCGFYLYTSDENIMKTMEIVMKAFGAISAMYMMTLSTNTSEIISVLRKAHIPKIIIELMNMIYRFIFILIDVQCKMKNSAQSRLGYIDFKTSCYSFGSTASNLLIVSLKKANTYYNAMESRCYNGDMLFLEEEKKVKTIHVVLACIYFSILIFIWYIAK
>NZ_CP033248.1|WP_070779588.1|876249_877092_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MDDKIKEIILQIKELCYSYTGEKNTLNNINLNIHRGEKIAVLGSNGAGKSTFFLNINGVLTPKSGKIIYKGKAITKKNLNELRKNIGIVFQDADNQIIASTVLAEVSFGPMNLKLPKDEVIKRVNEALDYMNISEFKERPPHYLSGGEKKRVSIADIIAMKSEVIIFDEPTAALDPLNAEMLEEVLKKLSLENKTLLISTHDVDFAYRWADRVVVFSKGGIIGDGTPLEIFKNEEILKNSNLKRPIMLDVYETLIEKRILTNDNLYPKNINEFKKIFNKY
>NZ_CP033248.1|WP_002581761.1|874933_875680_-|energy-coupling-factor-ABC-transporter-permease
MKNQNKIIKIAILLVLMFGITPAANAMHIMEGYLPAKYCIGWGIICLPFLIGGFLSIKKSLDKDRKSVTILAMAGAFIFVISSLKIPSVTGSCSHMTGTGLGAILFGPLAVSVLGIIVLIFQAILLAHGGITTLGANTFSMSIAGPLLSFGLYKLCVKLKINRKVSVFIAAALGDLFTYCITSFQLAMAYPSPEGGVFASAVKFLGVFAPTQLPLAIIEGILTVIVIIGLETYAKSELTGLGFLKEEK
>NZ_CP033248.1|WP_002581762.1|874617_874932_-|energy-coupling-factor-ABC-transporter-substrate-binding-protein
MTKNKKTVIILLIIALAIAIIPLFALKGAEFGGSDDAGSVMVEEINGEAYEPWFTPVMETWIDGELPGEVESLLFCVQTGIGVGIFAFFMGRFVERKKWENKKE
>NZ_CP033248.1|WP_002581763.1|873525_874002_-|glutathione-peroxidase
MEFYDLSATKMNGRKVSMEEYRGKVVLVVNTASKCGLTPQFTELEELYNEYKDNGFEVLGFPCNQFAKQDPGSNKEIGEFCLRNYGVSFTMFEKIDVNGQNTHPIYKFLKNEAGGLIGRDIKWNFTKFLIDSEGNVIKRYSPITKPSSIKKDIYSLIK
>NZ_CP033248.1|WP_002581764.1|872924_873470_-|glutathione-peroxidase
MNIYDYKYKEISGKEVLLEDYRNKAIVIVNIASKCGFTPQLEDLQKIYEKYKEHGFEIIGFPSNQFNEQSPGSNSDLDIFCKRNYGVTFNLSEKVDVRGSNSHPLFNYLTEKCPFKGFNKENITEKMLYSITEENYPEYLVGDSIKWNFTKFLVDKNGNVVKRYESHIEPLDMIKDIEELL
>NZ_CP033248.1|WP_153739005.1|872009_872864_-|thioredoxin-reductase
MERYDLAIIGSGPAGVSAALNAKIRKKNFIIFGSKELSNKLTKAEKINNYLGFYGKSGAQIRDEFIKHMESMDISITEEKINNIYAMGDYFSLIANDKMYEASAIILATGVNFGRPFKGEEELLGKGVGYCATCDAPLYKDKIVTIIAYNKHEEDEVNFISTIASKVYYIPMYKEKVEVDEKVEIINDMPVEIIGKERVEKLILKNSEIETDGIFILRDSVSPSQLVPGLELDENHVKVDRKMTTNLQGCFAAGDIVGAPYQYIKAAGEGNIAALSYIDNLNKK
>NZ_CP033248.1|WP_035764612.1|871472_871886_-|PTS-sugar-transporter-subunit-IIB
MIKILICCLGGFSSSAMVKKIKSEIIENNLQKEMSVDFSPFMNANKLYHEYNVIMVCPHTRYEVNGFVKKHYDLNIPIYVLPPKMYGQMNAKELYIDAVDIINGYNDSKTNPWHFKGEEEIMTVQRACSYRNFKKAF

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Crispr_ID: NZ_CP033248_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033248_2

882198-882288

Orphan

Consensus_repeat	Method
TTACTAAAATCACCGTTCGCAAGGGTAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033248_2

>merge|NZ_CP033248|2|882198-882288|CRISPRCasFinder
TTACTAAAATCACCGTTCGCAAGGGTAAAATACTTATAAACGTGATAACTTGGTTCACAAGTTACAAAAATCACCGTTCGCAAGGGTAAAA

>NZ_CP033248|2|2|882198-882288|CRISPRCasFinder
TTACTAAAATCACCGTTCGCAAGGGTAAAA	TACTTATAAACGTGATAACTTGGTTCACAAG
TTACAAAAATCACCGTTCGCAAGGGTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033248.1\|WP_002581764.1\|872924_873470_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223463
NZ_CP033248.1\|WP_070779587.1\|878132_879794_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP033248.1\|WP_035764612.1\|871472_871886_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_CP033248.1\|WP_153739005.1\|872009_872864_-\|thioredoxin-reductase	unknown	unknown	gnl\|CDD\|223566
NZ_CP033248.1\|WP_002581763.1\|873525_874002_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NZ_CP033248.1\|WP_033128234.1\|877101_877872_-\|cobalt-ECF-transporter-T-component-CbiQ	unknown	unknown	gnl\|CDD\|274139
NZ_CP033248.1\|WP_070779588.1\|876249_877092_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP033248.1\|WP_002581761.1\|874933_875680_-\|energy-coupling-factor-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181384
NZ_CP033248.1\|WP_003411363.1\|880080_881544_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033248.1\|WP_002581762.1\|874617_874932_-\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|179494

Protein	Function_ID	Function_description	E-value
NZ_CP033248.1\|WP_002581764.1\|872924_873470_-\|glutathione-peroxidase	gnl\|CDD\|223463	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones].	5.51449e-76
NZ_CP033248.1\|WP_070779587.1\|878132_879794_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.11455e-40
NZ_CP033248.1\|WP_035764612.1\|871472_871886_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	5.00874e-16
NZ_CP033248.1\|WP_002581763.1\|873525_874002_-\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	5.12289e-96
NZ_CP033248.1\|WP_033128234.1\|877101_877872_-\|cobalt-ECF-transporter-T-component-CbiQ	gnl\|CDD\|274139	TIGR02454, Uncharacterized_protein_MJ1089, cobalt ECF transporter T component CbiQ. This model represents the CbiQ component of the cobalt-specific ECF-type. CbiQ is now recognized as the T component of energy-coupling factor (ECF)-type transporters. The S component confers specificity (CbiM-N for cobalt systems), which CbiO is the ABC-family ATPase. In general, proteins found by this model reside next to the other putative subunits of the complex, identified as CbiN, CbiO, or CbiM. Note that the designation of cobalt transporter has been spread excessively among ECF system transporters with many other specificities. [Transport and binding proteins, Cations and iron carrying compounds].	3.95384e-35
NZ_CP033248.1\|WP_070779588.1\|876249_877092_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	1.31962e-97
NZ_CP033248.1\|WP_002581761.1\|874933_875680_-\|energy-coupling-factor-ABC-transporter-permease	gnl\|CDD\|181384	PRK08319, PRK08319, energy-coupling factor ABC transporter permease.	6.40713e-110
NZ_CP033248.1\|WP_153739005.1\|872009_872864_-\|thioredoxin-reductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	7.72969e-63
NZ_CP033248.1\|WP_002581762.1\|874617_874932_-\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	gnl\|CDD\|179494	PRK02898, PRK02898, energy-coupling factor ABC transporter substrate-binding protein.	3.26606e-24

>NZ_CP033248.1|WP_003411363.1|880080_881544_-|hypothetical-protein
MDKDDRLFKEDMIKLFKNVYEVLVKKEKFTDFYETLDNDLANLKDTGKREVIYKNLTNSIKRTKTRWLNKYVNGSNNSLSEDIEYAEHFYKRVLEGVYEPDKFVMIYGVNNIDEYKKKMFNELYTWRDNEDALLSSYKYIGTFQKRSITLAFRSDILKLYYDFLTNNAKSVITIPSVLSNFSIDTTNKKDYLKDDEKEFLDDNLSLEGTIDRLIVNKENQQKLLMKLEKQVYLRIEEGKDSLDIITQIALLKAIKQLNSLDTRIISHYYTHFYNIVADKSVDKYIGDLVSELGLSDSKKNTDAVIKSLLKIGSIRLESENYEGREIKGTLFEVSISERDGRKFAQVFLGGFLRTLIIMDSSFNFNKDVFDLLSNDAQQIAIWLQNRRLKMVLESEDFKDVIAIQRFTDAILMSTKSIYKKRDRIINALDELKQYKLIVKNYEYIKKNYEFVISYIELPESVIKKIKNKEFKTGELIEGQIHADYTVE
>NZ_CP033248.1|WP_070779587.1|878132_879794_-|HAMP-domain-containing-histidine-kinase
MKNIKNDLKVIGIIFLFCIMYSSIVREEFSILNILSIIDVLIIFCFVLYIISAVATYSLKLKYINNLYRYLSICFLSVGMLSFSYICFKKQIHINNGFENSCISIEILAAILESCYLIYCFSNYKNNINTKRFLAGTLLISICTIYICSALSILPLYEVDNLYIKSIILICFSICILLKIYLLRVIKKSGTDITESMALYLKMYMYLSIISIIIELNVYMNISSELIFIYYLIRALSSYCIVKIILVEILKTPQEYLYKNLVKKSEDLEATILELKKTIDDKNIIYKDYEKRTKHEEVKNEVLANISHEFKTPVNVIYSAVQTQDLIKNTANIEELLKYNKIIKQNCNRLTRLINNFIDTTRFEKENVKTEFTCENIVEITEYLTMCVVPFANSKKLNLIFDTSDEELYSLIDKELYDRMILNLLSNAIKYSRINGNIKVMIKDDNKFIKITIEDDGIGIDKYHLKDIFSIFERVDKSYSRNTEGSGLGLNIAKKIIDIHNGTISIESIKEKGTSVIVSIPKCSEKYVDNISHRLQDNTYVKYEVEVEMSDIY
>NZ_CP033248.1|WP_033128234.1|877101_877872_-|cobalt-ECF-transporter-T-component-CbiQ
MERKIDSYAYKSKLRKINPAFKVIFAFLTLLICIIADNIYVSLAIIVSMGFITIFKGGIKFHEYMSLMSIPVVFMILGSIAIAFGVSMSPIGDYNLHLCGFYLYTSDENIMKTMEIVMKAFGAISAMYMMTLSTNTSEIISVLRKAHIPKIIIELMNMIYRFIFILIDVQCKMKNSAQSRLGYIDFKTSCYSFGSTASNLLIVSLKKANTYYNAMESRCYNGDMLFLEEEKKVKTIHVVLACIYFSILIFIWYIAK
>NZ_CP033248.1|WP_070779588.1|876249_877092_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MDDKIKEIILQIKELCYSYTGEKNTLNNINLNIHRGEKIAVLGSNGAGKSTFFLNINGVLTPKSGKIIYKGKAITKKNLNELRKNIGIVFQDADNQIIASTVLAEVSFGPMNLKLPKDEVIKRVNEALDYMNISEFKERPPHYLSGGEKKRVSIADIIAMKSEVIIFDEPTAALDPLNAEMLEEVLKKLSLENKTLLISTHDVDFAYRWADRVVVFSKGGIIGDGTPLEIFKNEEILKNSNLKRPIMLDVYETLIEKRILTNDNLYPKNINEFKKIFNKY
>NZ_CP033248.1|WP_002581761.1|874933_875680_-|energy-coupling-factor-ABC-transporter-permease
MKNQNKIIKIAILLVLMFGITPAANAMHIMEGYLPAKYCIGWGIICLPFLIGGFLSIKKSLDKDRKSVTILAMAGAFIFVISSLKIPSVTGSCSHMTGTGLGAILFGPLAVSVLGIIVLIFQAILLAHGGITTLGANTFSMSIAGPLLSFGLYKLCVKLKINRKVSVFIAAALGDLFTYCITSFQLAMAYPSPEGGVFASAVKFLGVFAPTQLPLAIIEGILTVIVIIGLETYAKSELTGLGFLKEEK
>NZ_CP033248.1|WP_002581762.1|874617_874932_-|energy-coupling-factor-ABC-transporter-substrate-binding-protein
MTKNKKTVIILLIIALAIAIIPLFALKGAEFGGSDDAGSVMVEEINGEAYEPWFTPVMETWIDGELPGEVESLLFCVQTGIGVGIFAFFMGRFVERKKWENKKE
>NZ_CP033248.1|WP_002581763.1|873525_874002_-|glutathione-peroxidase
MEFYDLSATKMNGRKVSMEEYRGKVVLVVNTASKCGLTPQFTELEELYNEYKDNGFEVLGFPCNQFAKQDPGSNKEIGEFCLRNYGVSFTMFEKIDVNGQNTHPIYKFLKNEAGGLIGRDIKWNFTKFLIDSEGNVIKRYSPITKPSSIKKDIYSLIK
>NZ_CP033248.1|WP_002581764.1|872924_873470_-|glutathione-peroxidase
MNIYDYKYKEISGKEVLLEDYRNKAIVIVNIASKCGFTPQLEDLQKIYEKYKEHGFEIIGFPSNQFNEQSPGSNSDLDIFCKRNYGVTFNLSEKVDVRGSNSHPLFNYLTEKCPFKGFNKENITEKMLYSITEENYPEYLVGDSIKWNFTKFLVDKNGNVVKRYESHIEPLDMIKDIEELL
>NZ_CP033248.1|WP_153739005.1|872009_872864_-|thioredoxin-reductase
MERYDLAIIGSGPAGVSAALNAKIRKKNFIIFGSKELSNKLTKAEKINNYLGFYGKSGAQIRDEFIKHMESMDISITEEKINNIYAMGDYFSLIANDKMYEASAIILATGVNFGRPFKGEEELLGKGVGYCATCDAPLYKDKIVTIIAYNKHEEDEVNFISTIASKVYYIPMYKEKVEVDEKVEIINDMPVEIIGKERVEKLILKNSEIETDGIFILRDSVSPSQLVPGLELDENHVKVDRKMTTNLQGCFAAGDIVGAPYQYIKAAGEGNIAALSYIDNLNKK
>NZ_CP033248.1|WP_035764612.1|871472_871886_-|PTS-sugar-transporter-subunit-IIB
MIKILICCLGGFSSSAMVKKIKSEIIENNLQKEMSVDFSPFMNANKLYHEYNVIMVCPHTRYEVNGFVKKHYDLNIPIYVLPPKMYGQMNAKELYIDAVDIINGYNDSKTNPWHFKGEEEIMTVQRACSYRNFKKAF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP033248_1	1.1\|882034\|51\|NZ_CP033248\|CRISPRCasFinder	882034-882084	51	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	379362-379412	0	1.0
NZ_CP033248_1	1.1\|882034\|51\|NZ_CP033248\|CRISPRCasFinder	882034-882084	51	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	493938-493988	0	1.0
NZ_CP033248_1	1.1\|882034\|51\|NZ_CP033248\|CRISPRCasFinder	882034-882084	51	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	296581-296631	0	1.0
NZ_CP033248_1	1.1\|882034\|51\|NZ_CP033248\|CRISPRCasFinder	882034-882084	51	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	882019-882069	0	1.0
NZ_CP033248_1	1.1\|882034\|51\|NZ_CP033248\|CRISPRCasFinder	882034-882084	51	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	882034-882084	0	1.0
NZ_CP033248_1	1.1\|882034\|51\|NZ_CP033248\|CRISPRCasFinder	882034-882084	51	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	331611-331661	0	1.0
NZ_CP033248_2	2.1\|882228\|31\|NZ_CP033248\|CRISPRCasFinder	882228-882258	31	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	379188-379218	0	1.0
NZ_CP033248_2	2.1\|882228\|31\|NZ_CP033248\|CRISPRCasFinder	882228-882258	31	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	296775-296805	0	1.0
NZ_CP033248_2	2.1\|882228\|31\|NZ_CP033248\|CRISPRCasFinder	882228-882258	31	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	882213-882243	0	1.0
NZ_CP033248_2	2.1\|882228\|31\|NZ_CP033248\|CRISPRCasFinder	882228-882258	31	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	882228-882258	0	1.0
NZ_CP033248_2	2.1\|882228\|31\|NZ_CP033248\|CRISPRCasFinder	882228-882258	31	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	331805-331835	0	1.0
NZ_CP033248_2	2.1\|882228\|31\|NZ_CP033248\|CRISPRCasFinder	882228-882258	31	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	493764-493794	1	0.968

1. spacer 1.1|882034|51|NZ_CP033248|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

2. spacer 1.1|882034|51|NZ_CP033248|CRISPRCasFinder matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

3. spacer 1.1|882034|51|NZ_CP033248|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

4. spacer 1.1|882034|51|NZ_CP033248|CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

5. spacer 1.1|882034|51|NZ_CP033248|CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

6. spacer 1.1|882034|51|NZ_CP033248|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 0, identity: 1.0

aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	CRISPR spacer
aacaaaattcaactcctttttactattatttttattaaaaattgcgtttcg	Protospacer
***************************************************

7. spacer 2.1|882228|31|NZ_CP033248|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

8. spacer 2.1|882228|31|NZ_CP033248|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

9. spacer 2.1|882228|31|NZ_CP033248|CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

10. spacer 2.1|882228|31|NZ_CP033248|CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

11. spacer 2.1|882228|31|NZ_CP033248|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 0, identity: 1.0

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttggttcacaag	Protospacer
*******************************

12. spacer 2.1|882228|31|NZ_CP033248|CRISPRCasFinder matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 1, identity: 0.968

tacttataaacgtgataacttggttcacaag	CRISPR spacer
tacttataaacgtgataacttcgttcacaag	Protospacer
********************* *********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

216561 : 256872

Erysipelothrix_phage(25.81%)

holin,portal,protease,capsid,head,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_153738813.1\|216561_216984_-	helix-turn-helix domain-containing protein	S6C481	Thermus_phage	2.9e-07	35.6
WP_153738814.1\|217128_217329_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_153738815.1\|217408_217621_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_153738816.1\|217639_217984_+	hypothetical protein	S5M5X1	Brevibacillus_phage	3.6e-08	37.1
WP_153738817.1\|217983_219150_+	DUF2800 domain-containing protein	S5MUB5	Brevibacillus_phage	1.6e-132	62.4
WP_124229618.1\|219171_219726_+	DUF2815 family protein	S5MC21	Brevibacillus_phage	5.5e-75	76.4
WP_153738818.1\|219731_221684_+	hypothetical protein	S5M5X4	Brevibacillus_phage	2.3e-245	65.7
WP_153738819.1\|221861_222656_+	BRO family protein	A0A1Q1PVZ8	Staphylococcus_phage	2.2e-69	51.7
WP_153739007.1\|222724_225139_+	hypothetical protein	A0A0A7RTG3	Clostridium_phage	5.6e-289	59.7
WP_153738820.1\|225484_225763_+	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	3.2e-23	61.1
WP_153738821.1\|225759_227127_+	ATP-dependent helicase	S5MA26	Brevibacillus_phage	2.8e-168	63.1
WP_153738822.1\|227169_227649_+	DUF1492 domain-containing protein	NA	NA	NA	NA
WP_153738823.1\|227758_228550_+	hypothetical protein	NA	NA	NA	NA
WP_153738824.1\|228568_228877_+	hypothetical protein	NA	NA	NA	NA
WP_153739008.1\|229271_229664_+	HNH endonuclease	M1PLL8	Streptococcus_phage	4.0e-27	48.8
WP_153738825.1\|229908_231153_+	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	9.3e-147	60.0
WP_153738826.1\|231220_231532_+	hypothetical protein	A0A2K5B282	Erysipelothrix_phage	3.6e-31	65.7
WP_153738827.1\|231684_231939_+	hypothetical protein	NA	NA	NA	NA
WP_153738828.1\|232011_232728_+	virulence-related protein	A0A2K5B280	Erysipelothrix_phage	1.1e-14	31.7
WP_153738829.1\|232813_233713_+	hypothetical protein	NA	NA	NA	NA
WP_153738830.1\|233766_234237_+\|terminase	phage terminase small subunit P27 family	Q6DMU4	Streptococcus_phage	4.7e-59	73.4
WP_153738831.1\|234241_235786_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	4.4e-231	73.9
WP_153738832.1\|235858_236692_+	hypothetical protein	NA	NA	NA	NA
WP_153738833.1\|236755_238045_+\|portal	phage portal protein	Q6DMU2	Streptococcus_phage	1.5e-128	57.9
WP_153738834.1\|237977_238619_+\|head,protease	HK97 family phage prohead protease	A0A1W6JP53	Morganella_phage	7.4e-31	46.3
WP_153738835.1\|238632_239910_+\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_153738836.1\|239926_240346_+	hypothetical protein	NA	NA	NA	NA
WP_153738837.1\|240363_240639_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_153738838.1\|240613_240970_+\|head	phage head closure protein	A0A0A7RUH8	Clostridium_phage	2.7e-22	48.6
WP_153738839.1\|240962_241355_+	hypothetical protein	W8CZ44	Bacillus_phage	3.6e-12	32.3
WP_153738840.1\|241351_241681_+	hypothetical protein	A0A0S2SY15	Bacillus_phage	2.2e-15	44.9
WP_153738841.1\|241683_242250_+\|tail	phage tail protein	A0A1L2BYA0	Clostridium_phage	2.5e-51	57.1
WP_153738842.1\|242374_243178_+	hypothetical protein	NA	NA	NA	NA
WP_153738843.1\|243358_243718_+	hypothetical protein	NA	NA	NA	NA
WP_153738844.1\|243865_244189_+	hypothetical protein	A0A1L2BYA4	Clostridium_phage	1.7e-07	33.6
WP_153738845.1\|244236_244383_+	hypothetical protein	A0A1L2BYA3	Clostridium_phage	2.7e-05	52.4
WP_153738846.1\|244410_246693_+\|tail	phage tail tape measure protein	M4QNS0	Tetraselmis_viridis_virus	2.5e-28	33.7
WP_153738847.1\|246692_247397_+\|tail	phage tail protein	A0A2H4J851	uncultured_Caudovirales_phage	9.9e-21	29.5
WP_153738848.1\|247396_249301_+	hypothetical protein	A0A0A7RUI9	Clostridium_phage	1.7e-46	39.9
WP_153738849.1\|249313_250483_+	hypothetical protein	NA	NA	NA	NA
WP_153738850.1\|250493_252182_+	hypothetical protein	Q0H227	Geobacillus_phage	1.7e-13	34.7
WP_153738851.1\|252221_252632_+\|holin	holin	A0A2K5B2A2	Erysipelothrix_phage	2.0e-42	61.8
WP_153738852.1\|252624_253308_+	N-acetylmuramoyl-L-alanine amidase	D6QWM8	uncultured_phage	1.4e-16	34.5
WP_153738853.1\|253628_255257_+	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	7.2e-107	46.7
WP_153738854.1\|255270_256872_+	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	7.1e-123	53.0

DBSCAN-SWA_2

612440 : 621525

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_153738919.1\|612440_613286_-	hypothetical protein	A0A2H4J162	uncultured_Caudovirales_phage	7.8e-12	24.9
WP_153738920.1\|613334_614129_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_113886508.1\|614546_615278_-	response regulator	A0A2R2ZGH8	Clostridioides_phage	2.9e-15	30.0
WP_113886509.1\|615339_617184_-	ATP-binding protein	X5JAC0	Clostridium_phage	1.3e-27	28.3
WP_153738921.1\|617674_619276_-	hypothetical protein	W8CYF6	Bacillus_phage	2.8e-18	24.1
WP_113886511.1\|619259_619964_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.9e-35	34.6
WP_113886512.1\|619968_621525_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.0e-17	34.8

DBSCAN-SWA_3

714266 : 766307

uncultured_Caudovirales_phage(43.33%)

transposase,coat,portal,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002581275.1\|714266_715598_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.8e-24	31.2
WP_153738952.1\|716114_719750_-	hypothetical protein	NA	NA	NA	NA
WP_153738953.1\|720411_721095_-	hypothetical protein	NA	NA	NA	NA
WP_153738954.1\|721124_722162_-	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	NA	NA	NA	NA
WP_153739011.1\|722158_724639_-	AAA domain-containing protein	K4I1H4	Acidithiobacillus_phage	6.8e-24	29.1
WP_033127187.1\|725335_726091_-	DNA adenine methylase	A0A2H4J7L8	uncultured_Caudovirales_phage	2.0e-112	74.9
WP_153738955.1\|726499_727024_+	hypothetical protein	NA	NA	NA	NA
WP_003432416.1\|727419_727620_-	alpha/beta-type small acid-soluble spore protein	Q77YX0	Bacillus_phage	2.8e-05	42.2
WP_153739012.1\|727849_728722_-	DNA adenine methylase	A0A2K9R7J9	Dishui_lake_phycodnavirus	8.0e-20	28.3
WP_153738956.1\|728794_730372_-	AAA family ATPase	NA	NA	NA	NA
WP_033127184.1\|730611_730791_-	hypothetical protein	A0A2H4J069	uncultured_Caudovirales_phage	4.7e-12	75.0
WP_153738957.1\|731250_732894_-	hypothetical protein	I3VYU6	Thermoanaerobacterium_phage	1.2e-19	33.1
WP_153738958.1\|732944_733268_-	hypothetical protein	NA	NA	NA	NA
WP_002580765.1\|733283_733508_-	hypothetical protein	A0A249XXC7	Clostridium_phage	6.2e-09	50.0
WP_153738959.1\|733574_733712_-	hypothetical protein	NA	NA	NA	NA
WP_153738960.1\|733811_734021_-	hypothetical protein	NA	NA	NA	NA
WP_153738961.1\|734265_734517_-	hypothetical protein	NA	NA	NA	NA
WP_153738962.1\|735685_736303_-	DUF2313 domain-containing protein	A0A0A7RTU9	Clostridium_phage	6.2e-43	41.2
WP_153738963.1\|736303_738421_-	hypothetical protein	A0A0A7S1G0	Clostridium_phage	1.8e-25	56.8
WP_153738964.1\|738421_739549_-	hypothetical protein	A0A2H4J7K8	uncultured_Caudovirales_phage	3.0e-51	35.4
WP_045144373.1\|739555_739993_-	DUF2634 domain-containing protein	A0A2H4J4Q8	uncultured_Caudovirales_phage	2.3e-23	43.4
WP_153738965.1\|739985_740330_-	hypothetical protein	A0A0A8WFG6	Clostridium_phage	2.6e-14	42.7
WP_153738966.1\|740319_741297_-	XkdQ	A0A2H4J063	uncultured_Caudovirales_phage	6.3e-74	47.4
WP_153738967.1\|741310_741793_-	hypothetical protein	NA	NA	NA	NA
WP_153738968.1\|742164_743004_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_153738969.1\|743041_746815_-\|tail	phage tail tape measure protein	A0A2H4J055	uncultured_Caudovirales_phage	3.3e-86	34.1
WP_002581894.1\|747018_747513_-	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	3.8e-19	39.1
WP_002581893.1\|747545_747965_-\|tail	phage tail tube protein	A0A2H4J032	uncultured_Caudovirales_phage	7.9e-42	60.3
WP_002581892.1\|747982_749422_-	hypothetical protein	A0A0A8WI77	Clostridium_phage	1.5e-111	46.0
WP_027635367.1\|749421_749655_-	hypothetical protein	NA	NA	NA	NA
WP_153738970.1\|749670_750492_-	hypothetical protein	A0A2H4J4Q0	uncultured_Caudovirales_phage	2.5e-84	53.8
WP_153738971.1\|750495_750921_-	hypothetical protein	A0A2H4J736	uncultured_Caudovirales_phage	1.6e-21	42.6
WP_153738972.1\|750925_751309_-	hypothetical protein	A0A2H4J057	uncultured_Caudovirales_phage	1.6e-33	52.4
WP_002581887.1\|751308_751629_-	hypothetical protein	A0A2H4J040	uncultured_Caudovirales_phage	2.1e-26	59.4
WP_002581886.1\|751631_751883_-	hypothetical protein	NA	NA	NA	NA
WP_002581885.1\|751939_752995_-	hypothetical protein	D9ZND6	Clostridium_phage	1.3e-85	50.0
WP_002581884.1\|753011_753416_-	hypothetical protein	NA	NA	NA	NA
WP_002581883.1\|753444_754071_-	hypothetical protein	A0A0K2CP96	Brevibacillus_phage	8.9e-13	35.8
WP_046057716.1\|754384_754699_-	hypothetical protein	NA	NA	NA	NA
WP_002581881.1\|754729_755359_-	hypothetical protein	A0A0A7RUT3	Clostridium_phage	4.1e-42	64.1
WP_002581879.1\|755844_757611_-	hypothetical protein	A0A2H4J048	uncultured_Caudovirales_phage	4.3e-145	45.9
WP_153738973.1\|757623_759174_-\|portal	phage portal protein	D9ZNC8	Clostridium_phage	1.5e-138	52.1
WP_002581877.1\|759395_760754_-\|terminase	PBSX family phage terminase large subunit	A0A0A7S0Q5	Clostridium_phage	2.2e-202	75.3
WP_002581876.1\|760746_761697_-	hypothetical protein	A0A0A7RTY1	Clostridium_phage	2.3e-44	40.5
WP_002581874.1\|761897_762089_-	hypothetical protein	NA	NA	NA	NA
WP_002581872.1\|762552_762729_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002581871.1\|763342_764029_-	hypothetical protein	NA	NA	NA	NA
WP_002581870.1\|764237_764774_-	hypothetical protein	A0A0A7RVS1	Clostridium_phage	1.9e-19	38.9
WP_002581869.1\|764895_765126_-	hypothetical protein	NA	NA	NA	NA
WP_002581868.1\|765169_765376_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002581867.1\|765469_765607_+	hypothetical protein	NA	NA	NA	NA
WP_002581866.1\|765587_765914_-	hypothetical protein	NA	NA	NA	NA
WP_002581865.1\|766058_766307_-\|coat	spore coat protein	NA	NA	NA	NA

DBSCAN-SWA_4

772158 : 782368

Clostridium_phage(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_153738975.1\|772158_772869_-	hypothetical protein	A0A1Q1PVU4	Staphylococcus_phage	7.9e-34	57.1
WP_002581852.1\|772879_773485_-	hypothetical protein	J9QD21	Clostridium_phage	4.1e-07	28.9
WP_002581849.1\|773909_774080_-	hypothetical protein	NA	NA	NA	NA
WP_002581846.1\|774538_774781_-	hypothetical protein	NA	NA	NA	NA
WP_002581845.1\|774793_775120_-	hypothetical protein	A0A1Q1PVT2	Staphylococcus_phage	4.5e-08	40.3
WP_002581844.1\|775211_775586_-	hypothetical protein	NA	NA	NA	NA
WP_002581843.1\|775684_775903_+	hypothetical protein	NA	NA	NA	NA
WP_002581842.1\|775899_776091_-	hypothetical protein	NA	NA	NA	NA
WP_002581840.1\|776285_777104_-	hypothetical protein	A0A0A8WJ22	Clostridium_phage	3.4e-65	52.2
WP_153738976.1\|777103_777313_-	helix-turn-helix domain-containing protein	I3VYZ0	Thermoanaerobacterium_phage	1.4e-10	54.1
WP_002581838.1\|777528_777933_+	helix-turn-helix transcriptional regulator	I3VYZ1	Thermoanaerobacterium_phage	3.6e-07	36.4
WP_002581837.1\|777946_778393_+	ImmA/IrrE family metallo-endopeptidase	I3VYZ2	Thermoanaerobacterium_phage	5.9e-11	38.5
WP_002581836.1\|778435_779827_+	DUF4041 domain-containing protein	M1NRY5	Streptococcus_phage	1.4e-71	51.2
WP_002581835.1\|779904_780102_+	hypothetical protein	NA	NA	NA	NA
WP_153738977.1\|780162_781695_+	recombinase family protein	A0A0A7RTP8	Clostridium_phage	1.2e-90	39.8
WP_153738978.1\|781747_782368_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	6.7e-37	40.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP033249

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP033248

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection