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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP038653 Citrobacter freundii strain 154 chromosome, complete genome 2 crisprs csa3,WYL,DEDDh,cas3,DinG,PD-DExK 0 1 18 0
NZ_CP038655 Citrobacter freundii strain 154 plasmid p154_2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP038654 Citrobacter freundii strain 154 plasmid p154_1, complete sequence 0 crisprs csa3 0 0 1 0

Results visualization

1. NZ_CP038653
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038653_1 368812-368935 Orphan NA
1 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038653_2 2315479-2315573 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP038653_1 1.1|368855|38|NZ_CP038653|CRISPRCasFinder 368855-368892 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 3 0.921

1. spacer 1.1|368855|38|NZ_CP038653|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 3, identity: 0.921

cggacgcaagatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.******..****************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 190298 : 195878 8 uncultured_Caudovirales_phage(57.14%) NA NA
DBSCAN-SWA_2 289803 : 299841 10 Tupanvirus(14.29%) tRNA NA
DBSCAN-SWA_3 474944 : 482065 6 Escherichia_phage(33.33%) transposase NA
DBSCAN-SWA_4 536547 : 561834 30 Escherichia_phage(37.5%) plate,transposase,head,terminase NA
DBSCAN-SWA_5 788682 : 857147 79 Enterobacteria_phage(61.54%) holin,integrase,capsid,protease,tail,head,portal,terminase attL 795519:795533|attR 854816:854830
DBSCAN-SWA_6 989048 : 1082627 115 Escherichia_phage(23.26%) plate,holin,integrase,protease,capsid,tail,transposase,terminase attL 1000408:1000438|attR 1082700:1082730
DBSCAN-SWA_7 1332537 : 1342115 8 Bacillus_phage(28.57%) tRNA,protease NA
DBSCAN-SWA_8 1396777 : 1405196 9 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_9 1496349 : 1539523 52 Escherichia_phage(40.0%) plate,holin,integrase,protease,tail,terminase attL 1495127:1495186|attR 1536662:1536793
DBSCAN-SWA_10 1574261 : 1675513 88 Cronobacter_phage(30.19%) integrase,capsid,tail,head,portal,transposase,terminase,tRNA attL 1569631:1569650|attR 1672792:1672811
DBSCAN-SWA_11 2291882 : 2341182 41 Stx2-converting_phage(33.33%) capsid,transposase,integrase,protease attL 2294588:2294605|attR 2337075:2337092
DBSCAN-SWA_12 2364583 : 2405637 62 Salmonella_phage(48.21%) plate,holin,integrase,capsid,tail attL 2364352:2364397|attR 2405652:2405697
DBSCAN-SWA_13 2746486 : 2805562 58 Sodalis_phage(14.29%) transposase,integrase,capsid attL 2750793:2750809|attR 2813127:2813143
DBSCAN-SWA_14 3880385 : 3957606 74 uncultured_Caudovirales_phage(71.43%) integrase,protease,capsid,tail,head,portal,terminase,tRNA attL 3904182:3904200|attR 3920424:3920442
DBSCAN-SWA_15 3980291 : 3987942 10 Thermobifida_phage(16.67%) NA NA
DBSCAN-SWA_16 4136273 : 4146278 12 Moraxella_phage(16.67%) portal,integrase attL 4130584:4130596|attR 4138466:4138478
DBSCAN-SWA_17 4258038 : 4274625 19 Escherichia_phage(50.0%) transposase,integrase attL 4252475:4252534|attR 4279191:4279960
DBSCAN-SWA_18 4856901 : 4903457 53 Salmonella_phage(59.18%) holin,integrase,tail,transposase,terminase attL 4841234:4841249|attR 4871806:4871821
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP038654
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 199809 : 252390 52 Escherichia_phage(39.13%) transposase,integrase attL 237432:237491|attR 254404:256424
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage