CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046023	Polaromonas sp. Pch-P chromosome, complete genome	3 crisprs	DEDDh,WYL,cas3,DinG,csa3,PD-DExK	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046023_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046023_1

2247493-2247635

Orphan

Consensus_repeat	Method
AACAGCGCGGAACCGGCTTTGCCGGGCCGCTGCTGTTGCCCCTGCGGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046023_1

>merge|NZ_CP046023|1|2247493-2247635|CRISPRCasFinder
AACAGCGCGGAACCGGCTTTGCCGGGCCGCTGCTGTTGCCCCTGCGGGGGATCCGGCTACACGAAGTGAGCCGAGAAGGGGGTAACTCAATACAACAGCGCGGAACCGGCTTTGCCGGGCCGCTGCTGTTGCCCCCTGCGGGG

>NZ_CP046023|1|1|2247493-2247635|CRISPRCasFinder
AACAGCGCGGAACCGGCTTTGCCGGGCCGCTGCTGTTGCCCCTGCGGGGG	ATCCGGCTACACGAAGTGAGCCGAGAAGGGGGTAACTCAATAC
AACAGCGCGGAACCGGCTTTGCCGGGCCGCTGCTGTTGCCCCCTGCGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046023.1\|WP_122956984.1\|2240612_2241419_+\|phytanoyl-CoA-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|368580
NZ_CP046023.1\|WP_092131429.1\|2239592_2240573_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NZ_CP046023.1\|WP_122956982.1\|2242510_2243779_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_CP046023.1\|WP_122956985.1\|2238867_2239563_+\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP046023.1\|WP_122956975.1\|2251579_2253013_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182388
NZ_CP046023.1\|WP_122956970.1\|2257190_2258183_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225722
NZ_CP046023.1\|WP_122956974.1\|2253087_2253798_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP046023.1\|WP_122956986.1\|2237438_2238815_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP046023.1\|WP_122956980.1\|2245616_2246492_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176173
NZ_CP046023.1\|WP_122957509.1\|2250275_2251016_+\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|376478
NZ_CP046023.1\|WP_122956976.1\|2251114_2251525_-\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP046023.1\|WP_122956972.1\|2255052_2255571_+\|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl\|CDD\|377815
NZ_CP046023.1\|WP_122956983.1\|2241387_2242392_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_CP046023.1\|WP_122956971.1\|2255572_2257075_+\|tripartite-tricarboxylate-transporter-permease	unknown	unknown	gnl\|CDD\|225870
NZ_CP046023.1\|WP_122956978.1\|2247677_2248889_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|234819
NZ_CP046023.1\|WP_122956973.1\|2254016_2254976_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NZ_CP046023.1\|WP_122957510.1\|2236007_2237021_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP046023.1\|WP_122956981.1\|2244616_2245495_-\|class-A-beta-lactamase	unknown	unknown	gnl\|CDD\|185339
NZ_CP046023.1\|WP_122956977.1\|2249201_2250095_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|236763
NZ_CP046023.1\|WP_122956979.1\|2246557_2247457_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236819

Protein	Function_ID	Function_description	E-value
NZ_CP046023.1\|WP_122956984.1\|2240612_2241419_+\|phytanoyl-CoA-dioxygenase-family-protein	gnl\|CDD\|368580	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH). This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins, ectoine hydroxylases and a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalyzing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterized by the accumulation of phytanic acid in plasma and tissues.	3.28797e-31
NZ_CP046023.1\|WP_092131429.1\|2239592_2240573_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NZ_CP046023.1\|WP_122956982.1\|2242510_2243779_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_CP046023.1\|WP_122956985.1\|2238867_2239563_+\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	1.90691e-51
NZ_CP046023.1\|WP_122956975.1\|2251579_2253013_-\|sensor-histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	1.2298e-52
NZ_CP046023.1\|WP_122956970.1\|2257190_2258183_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|225722	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown].	9.04197e-44
NZ_CP046023.1\|WP_122956974.1\|2253087_2253798_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.6045e-66
NZ_CP046023.1\|WP_122956986.1\|2237438_2238815_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP046023.1\|WP_122956980.1\|2245616_2246492_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176173	cd08484, PBP2_LTTR_beta_lactamase, The C-terminal substrate-domain of LysR-type transcriptional regulators for beta-lactamase genes, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators, BlaA and AmpR, that are involved in control of the expression of beta-lactamase genes. Beta-lactamases are responsible for bacterial resistance to beta-lactam antibiotics such as penicillins. BlaA (a constitutive class A penicillinase) belongs to the LysR family of transcriptional regulators, while BlaB (an inducible class C cephalosporinase or AmpC) can be referred to as a penicillin-binding protein, but it does not act as a beta-lactamase. AmpR regulates the expression of beta-lactamases in many enterobacterial strains and many other gram-negative bacilli. In contrast to BlaA, AmpR acts an activator only in the presence of the beta-lactam inducer. In the absence of the inducer, AmpR acts as a repressor. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.08895e-109
NZ_CP046023.1\|WP_122957509.1\|2250275_2251016_+\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|376478	pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, maleate isomerases EC:5.2.1.1, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase EC:4.1.1.76.	4.47445e-46
NZ_CP046023.1\|WP_122956976.1\|2251114_2251525_-\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	3.42117e-32
NZ_CP046023.1\|WP_122956972.1\|2255052_2255571_+\|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl\|CDD\|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	1.77334e-08
NZ_CP046023.1\|WP_122956983.1\|2241387_2242392_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	7.24134e-69
NZ_CP046023.1\|WP_122956971.1\|2255572_2257075_+\|tripartite-tricarboxylate-transporter-permease	gnl\|CDD\|225870	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP046023.1\|WP_122956978.1\|2247677_2248889_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	3.39096e-150
NZ_CP046023.1\|WP_122956973.1\|2254016_2254976_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	1.26997e-81
NZ_CP046023.1\|WP_122957510.1\|2236007_2237021_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.15145e-11
NZ_CP046023.1\|WP_122956981.1\|2244616_2245495_-\|class-A-beta-lactamase	gnl\|CDD\|185339	PRK15442, PRK15442, beta-lactamase TEM; Provisional.	2.61805e-80
NZ_CP046023.1\|WP_122956977.1\|2249201_2250095_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|236763	PRK10797, PRK10797, glutamate and aspartate transporter subunit; Provisional.	1.82177e-105
NZ_CP046023.1\|WP_122956979.1\|2246557_2247457_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|236819	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional.	8.20294e-40

>NZ_CP046023.1|WP_122956979.1|2246557_2247457_+|LysR-family-transcriptional-regulator
MRLRHIEVFNAVMLTGSVSGAARLINVTQPAVSRILQHAELQLGFALFQRTKGRLTPTSEALTLYPHIERLFAQLDEVQRLAANLKTGESAKELRILTVLALSYEILPHAIKLFRVKHADVAITLQALHSPQIVSALALQEADVGFLFSPVAHSALAQEHLADGRMVCVAPKGMLPARLVKRGNVALADLTKVPVVGLDVLDPVGRSLNQACREAGVGLEFHITVQTYHSALALAHHGLGVAVIDTCTAASADPSRVDVLELEPLIPVPIKALLPAGKPGSVVVRAFVRCFQQALTQRA
>NZ_CP046023.1|WP_122956980.1|2245616_2246492_+|LysR-family-transcriptional-regulator
MHLPLNALRAFEVSARHLSFTRAADELNVTQTAISQHVKNLEERMGVPLFRRLPRGLALTDEGLALLPALAESFGRIGALIEQFRDGRFREVLTVGAVGTFAVGWLIPRLAQFQEAHPFVDFRLFTNNNRVDLAGEGLDYAIRFGDGAWHGTEAEPLFAAPLSPVCAPAIASRLREPADLAGELLLRSYRSDEWVNWFAAAGVDSPVVRGTVFDSSLTMAEAAVQGAGVALLPVNLFARELRAGRLVRPFAIEIENGSYWLTRLKSKRTTLAMNVFRDWLLASTAPGAPVS
>NZ_CP046023.1|WP_122956981.1|2244616_2245495_-|class-A-beta-lactamase
MQRRQFTGALGAIMAGAGVSAYAQKSLGTGAVTARLQAIERESGGRLGVSILETGNGARWGYRAGERFPMCSTFKLLAAALILHRVDKGQEQLDRKIIVKPSDIITHSPTTKQYVGTQGITIAQLCEATVTLSDNAAGNLLLESFGGPAGLTAYTRSLGDTMTRLDRNEPSLNEATAGDKRDTTTPDAMVSTIQKIVLGTALSEASRKQMTQWLLDNKTGDTRLRALLRPGWRVGDKTGTGGHGSTNDVGILWPPGRAPVVVAAYLTGTSRPIAQREATLAKVGELAASLVA
>NZ_CP046023.1|WP_122956982.1|2242510_2243779_+|aspartate-kinase
MALIVHKYGGTSMGSTERIRNVAKRVAKWARAGHQMVVVPSAMSGETNRLLGLAKELAPTKPGDAYSRELDALAATGEQASSALLAIALQAEGMQAVSYAGWQVTIKTNNAYTKARIESIDDERVRGDLNAGKVVIITGFQGVDDGGNVTTLGRGGSDTSAVAVAAALKAHECLIYTDVDGVYTTDPRVVPEARRLHTVSFEEMLEMASMGSKVLQIRSVEFAGKYKVPLRVLSSFTEWDIDINEEAKSGTLISFEEDENMEQAIVSGIAFNRDEAKISVLGVPDTPGIAYQILGAVADANIEVDVIIQNISKDGKTDFSFTVHRNDYSKAVDLLKTQVLPKLGAQEVTGDAKICKVSIVGIGMRSHVGIASKMFRVLSEEGINIQMISTSEIKTSVVIDEKYMELAVRALHKAFDLDQPTV
>NZ_CP046023.1|WP_122956983.1|2241387_2242392_+|tRNA-lysidine(34)-synthetase-TilS
MTSRWATVAHKGAAQEPGLPDALSSFSPGLPLAVALSGGADSVALLVACAEKWPGQVYAIHIHHGLQAAADDFERHCAALCAQLNVPLIIQRVDARHAAGESPEDAARKARYKAFSAAAKEGHGLVAIKDIAIAQHADDQVETILLALSRGAGLPGLAAMPARWERDGITYHRPLLTVPGALLRAWLRERGIAWVEDPTNTDERFTRNRIRARLLPALEEVFPQFRETFARSARHSAQAQAMLVEVAQQDLAAVGSPPVIKALQALTAPRRANVLRHWLLQLQATPSAAQLEQLQQQIAACTTRGHQIHLKVATGHVTRDGAVLQYTAAADKPA
>NZ_CP046023.1|WP_122956984.1|2240612_2241419_+|phytanoyl-CoA-dioxygenase-family-protein
MASLSDQEIRHYREQGYVIPQFRLDDGWVRRMQDALNTLIRDNPGVRPEKLVSAHIEGRNDEGVRGSRDFFDLAMNTDIVDLVAQAIGPDVILWGCHVFCKPASEGYETPWHQDGHYWPIRPLANCTVWVALEPSTRENGCLRVIPGSHSGKQLHPHLHEDRTDLTLNQRMADGSFDENDAVDLELQPGQMSLHDIYMIHGAKANTSGIRRTGVALRYMPGTSLFDRSLRPADGKTGVAVSFATRPLWLLRGEDKTGRNDFTVGHRGA
>NZ_CP046023.1|WP_092131429.1|2239592_2240573_+|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha
MAKKTFLDFEQPIAELEGKIEELRYVQTESAVDISEEIDQLAKKSQQLTKDIYSDLTPWQITKIARHAERPYTLDYVNEIFTDFVELHGDRHFADDLSIVGGLARFNGTACMVLGHQKGRDTKERGLRNFGMSKPEGYRKALRLMKTAEKFKLPVFTFVDTPGAYPGIDAEERGQSEAIGRNIFEMAQLEVPIITTIIGEGGSGGALAISVADQVVMLQYSIYSVISPEGCASILWKTSDKAQEAAEALGITAHRLKALGVIDKIVNEPVGGAHRDHKQMAAFLKRALNDAFRQVSDLKVKELLDRRYERLQSYGRFTDTKADAGK
>NZ_CP046023.1|WP_122956985.1|2238867_2239563_+|DNA-3-methyladenine-glycosylase-2-family-protein
MKKIVKSGPGSVELAEVPEPATTVPEYWADACKHLVKKDRVMKRLIPQFGDACLQARGDAFSTLARSIVGQQISVKAAQSVWAKFSALPKKVTPANVLRLKVDDMRAAGLSARKVEYLVDLSIHFDAGTVHVKDWQAMDDEAIIAELVAIRGIGRWTAEMFLIFYLMRPNVLPLDDVGLISGISQNYFSGESVSRSDAREVAAAWAPYCSVATWYIWRSLDPLPVLGAEQN
>NZ_CP046023.1|WP_122956986.1|2237438_2238815_+|cysteine--tRNA-ligase
MSLRIYNTLSRAVEEFSPLEPGHVRMYVCGMTIYDLCHIGHARMMMAFDVVQRWLKASGLRVTYVRNITDIDDKIIKRAVERGITIRQLTDEMIVAMHQDIGALGIEPPSLEPRATEYVPQMLGMIATLEEKGLAYKGSTGDMNYAVRKFPGYGKLSGKSLDELRAGERVAVLDGKDDPLDFVLWKSAKPTEPDDAKWDSRYGPGRPGWHIECSAMSCQTLGETFDIHGGGADLQFPHHENEIAQSEGANGKPLANFWVHNGFVRVDNEKMSKSLGNFFTIREVLAKYDAETVRFFIVRAHYRSALNYSDAHLDDARNSLKRLYTALAGVTPEAVAIDWSSPFAARFKAAMDEDFGTPEAVAVLFELAGEVNKTRSASLAGLLKSLGGCLGLLQGDPGAYLQAGAGLDESSIQGLIAERAAAKAAKNFAEADRIRQDLLAKGIVLKDSPTGTTWEAQS
>NZ_CP046023.1|WP_122957510.1|2236007_2237021_-|tetratricopeptide-repeat-protein
MLVVAAALSVSAAHADDYADVSRLMRAGQFAEAMTKVDQYLASKPRDPQMRFFKGVIQTETGKTNDAIATFTKITEDYPELPEPYNNMAVLYAGQSQFDKARAALEMAIRTNPSYATAHENLGDVYARLASQAYSKALQLDGANPAVPPKLALIRTLFSADAKAQPQAQPQAQAKPATGAQASGQVTAAAPAAAPAAKPAAPAAATPAAAPAAAATPAAPAAASGADKEVEAAVRNWAQAWAGKDMSGYLASYGQNFDPPGNQARKAWEEDRRARIVGKNSISVKLSNMTVSVTGAKAVAKFKQDYSADSLNISSRKTLELAKVGDRWVIVKESTGG
>NZ_CP046023.1|WP_122956978.1|2247677_2248889_-|FAD-dependent-oxidoreductase
MHVCVLGAGIVGLATAYSLHRAGHEVTVVDRATPGSGASGGNGAQLSYSYVQPLADPGIWRQLPKLLLSPSSPLKLRPRLDVHQWLWGARFLAACNSKTSRDTTGYLLTLAALSRQSFDAMMLEEKLDCDFSATGKLVLYSDEAAFAGAQRQMLLQRELGSTQEAVDADRCVEIEPALKSRHGQIAGAIYTPGECAADCQKTCDGLMEVLRRRGVRFLLGTQVDQLVLRGKSIAAVATQQGHIEADRFVMALGAESARMAGTVGVHLPVYPLKGYSITVDVAPEPDAAPTVSVTDSARKVVFARIGSRMRVAGMAELSGYDSTVDPAQIASLKASTQTLFPASSTFDSLSPWAGMRPATPTGLPVIGLHAKGPHNLLFNTGHGALGFTLAFGSAQRISRMMAR
>NZ_CP046023.1|WP_122956977.1|2249201_2250095_+|transporter-substrate-binding-domain-containing-protein
MKFSILMTAVLMTAGLATTAGAQTVPTLKKVADSNKITVSYREASVPFSYLIGSKTSVGFSAELTEAIIDDVRKKVKKPNLEVAYMPVTSQNRIPLLVNGTYDLECGSTTNNIARGKDVAFAINHFYTGTRLLVKKSSGIKNYADLAKKTVASTTGTTNAQVIRKYSADKKLDMQLILGKDHDDSLLLVENDRALAFAMDDILLFGLMANSKNPASLEVVGDSLQVEPYACMLRKDDPEFKKLVDGTIMRLIKSGEFAKMYAKWFTSPIPPKGVNLNLPMSEELKANLKALSDKPAM
>NZ_CP046023.1|WP_122957509.1|2250275_2251016_+|aspartate/glutamate-racemase-family-protein
MHRTRVVGILGGMGPAAGADFARLFVQACADHMRSLQIPVSDQAFPEHWLAQVPVPDRSTALGLPGPGGHQPLDPMLHAMGKLAALGATTVAVACNTAHAWHGQLQERFPQLEVLHVAREVAETLAARGVREVGLLATEGTYRAGLYDQALRQAGLQCHIPSPAERERVMRGIYDGVKVGDMALAHACFAGVAKDLAARHGLSTLVLGCTEIPLALSAVPGMDGLDLVDPAALLARALAQRAYAAA
>NZ_CP046023.1|WP_122956976.1|2251114_2251525_-|RNA-binding-S4-domain-containing-protein
MDKLDKLRIDKWLWAARFYKTRALAVEQIDKGRVHVNGVEAKPAREVKAGDTVTLRQGPVQRTLTVRGISSQRGAAPIAQQLYEETEESLRLKAEAAEQRRLAGDPAGSQEHGRPTKRDRRTLDKAWNNRWSASAD
>NZ_CP046023.1|WP_122956975.1|2251579_2253013_-|sensor-histidine-kinase
MGERGSALHEVKSAGAISLRRYLLTGILLPVGVLIIVNTASLYRQALSAVNTAYDRTLLASAKSIGEQLGVTGYDEQSELRVTVPYAALEAFEADNQSRLFYRVSSLDGKMISGFAQLPFWRGKIPMRPPYSALVDFYDDEFREQPVRVAVLLQPVASSNGRAMAVIQVAETLELRQTLARKILFDTLWRQAVLLAVIAMVVVVVVQRATRPVRRLSAELQARHEGDLTPIAAADAPRELLPLIEATNQVMGRLQHLLDHQKRFVRDAAHQLRTPLAVLKVQVQSALRGDMDAQGALAEVNQTVDRATVLANQMLALAKVEQLRQQADLKAIDLAQIVRAVALDVAPLIADKDIDFEIETVPALVTSHEWMLGELTRNLLHNAIKHTPAGGTLSVRIVRDASYVALTVSDSGPGISAELAARLYQPFSAGNVRHGSGLGLAICREITEAMHGGISLENRVVHGRVTGLDATVRLPAT
>NZ_CP046023.1|WP_122956974.1|2253087_2253798_-|response-regulator-transcription-factor
MTPAVKLLLIEDDASMQAALQRALGRRGMEVVVCADGRQALAQWTATQPDVVVLDLTLPGLDGLQVLEQARGQGLTTPVLILTARGTVGDRIIGLNTGADDYLPKPFDLDELEARLRALSRRRPAPGTGTGTGTESGSSPITVGSLRYEKDSGAIYHRDEVLELTPRELTLLQSLISKPGHAVSKERLFELVFPGEVDVQYEAVEVVVYRLRKKLAHTGVTLVTLRGLGYLLKVTA
>NZ_CP046023.1|WP_122956973.1|2254016_2254976_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MRRDTFLKSMAALAATGAFPLSAFAAANVKMMIPANPGGGWDTTGRALGKALTDAKVADTVTYDNKGGAAGALGLAQFVNGSKGDPNALMVMGAVMLGGLITGKPPVSLSQATPIARLSSEYNVFVLPANSPFKTMKDVVEQLKKDPGSVKWGGGSRGSTEHIAAAMIAQKVGADPSKINYVAFRGGGEATAAILGGNVSVGGSGYSEFAEYIKAGKMRAIAVTSGKRLEGVDVPTLKEQGIDVEIGNWRGVYGAPGITAEQRKALTDMVLAALKSPAWAEAVKKNDWTPAVLSGDAFAKFVDDDFAALRATMVKSGMV
>NZ_CP046023.1|WP_122956972.1|2255052_2255571_+|tripartite-tricarboxylate-transporter-TctB-family-protein
MTTSNPPAVWPQTLVGAGVLLTGLALGFGAIGISSEAGYGGVGPNFLPWLVSVGLTICGAWIIWEAQSGGFRELDPPPGAAQAYWPGFVWVSAGLLLNAALITTLGFILSCTLCYLLAVQGLRRAGGQTAVNAPRTWVTDFLVGLAIAAPVFWMFTKFLAINLPGLTSTGWI
>NZ_CP046023.1|WP_122956971.1|2255572_2257075_+|tripartite-tricarboxylate-transporter-permease
MDIFNALMAGFATAITPANLIWCLVGCALGTAVGVLPGIGPAVAVAMLLPITAKVDITASMIFFSGIYYGAMYGGSTTSILLNTPGETASMVTAMEGNKMAKSGRAGAALATAAIGSFVAGTIATVIVTLFAPFVAEFAVKLGPPEYFLLMLLAFTTVSAVLGKSTLRGMTALLVGLAAGCVGLDQISGQGRYTGGIPELLDGIEIVLVAVGLFAVAEVLYAVLYEGKTVEDQNKLSRVHMTRADWKRSIPAWLRGTAIGTPFGCIPAGGTEIPTFLSYATEKKLASPDIKAEFGTKGAIEGVAGPEAANNATVTAALIPLLTLGIPTSNTTAILLGAFQNYGIQPGPQLFTTSAALVWALIASLYIGNVMLLVLNLPMVGLWVKLLKIPKPQLYAGILIFATVGAYGMRQSAFDLFLLYGIGLLGVLMRRFDFPTAPVVVGMILGPLAEAQLRNAVSIGEGSAMVFLQRPMSITLVVIVVAVLVLPRLVKFFTARKTAG
>NZ_CP046023.1|WP_122956970.1|2257190_2258183_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MPTIQRRKLLGGFAGLGVATLGGMAAPAWAQPAPKKLAPKLRIVIPAMTRTALDEAGRALGDALVGQGLADEIEYENKEGAGGTAGLAWYVQKYNADPTTFFMGDSNLVGSLALQKPAVDLTRVKPVARLVSDYPVVVVAAASPIKTINELVERLRGNPKLMPMAIGAVGGADHVFAGLLAKAAGNRPEDAVYLPFTRNFELVDAVTGGKAAIGIAGYSTFSAELASGKLRAVGVAAKKTAYGVRSVREQGVDVDITSWRAVFTGQGVPAARQAEMVEAVKASLAYELWKKTLKQAYWEQSWLSGPDLANFIDFDSKTTQLMVQLLKLKA

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Crispr_ID: NZ_CP046023_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046023_2

2517003-2517110

Orphan

Consensus_repeat	Method
CGGGCTCACTTCGTGTAGCCCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046023_2

>merge|NZ_CP046023|2|2517003-2517110|CRISPRCasFinder
CGGGCTCACTTCGTGTAGCCCGTTCCCCCCTCAAGGGGGCGGTGCCTGCGGTCTGGCGAAGCCGAAAAATCGGCACACCCCTATCGGGCTCACTTCGTGTAGCCCTTT

>NZ_CP046023|2|2|2517003-2517110|CRISPRCasFinder
CGGGCTCACTTCGTGTAGCCCGTT	CCCCCCTCAAGGGGGCGGTGCCTGCGGTCTGGCGAAGCCGAAAAATCGGCACACCCCTAT
CGGGCTCACTTCGTGTAGCCCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046023.1\|WP_122956782.1\|2505250_2516989_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|273865
NZ_CP046023.1\|WP_153976335.1\|2522464_2527558_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376100
NZ_CP046023.1\|WP_122956789.1\|2486432_2487458_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223157
NZ_CP046023.1\|WP_122956779.1\|2530914_2532609_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP046023.1\|WP_122956785.1\|2492145_2492859_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP046023.1\|WP_122957491.1\|2527848_2529744_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP046023.1\|WP_122956787.1\|2488993_2489590_+\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP046023.1\|WP_122956778.1\|2532790_2533054_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046023.1\|WP_122957494.1\|2485434_2486436_+\|cobalamin-biosynthesis-protein-CobD	unknown	unknown	gnl\|CDD\|377002
NZ_CP046023.1\|WP_153976405.1\|2520287_2522450_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|273865
NZ_CP046023.1\|WP_122956784.1\|2493152_2497448_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|273865
NZ_CP046023.1\|WP_122956786.1\|2490227_2492180_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP046023.1\|WP_122956788.1\|2487454_2488918_+\|cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|234838
NZ_CP046023.1\|WP_122957490.1\|2529858_2530584_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP046023.1\|WP_122956781.1\|2517432_2520027_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|273865
NZ_CP046023.1\|WP_122957492.1\|2502818_2504729_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP046023.1\|WP_122956775.1\|2534813_2535941_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320691
NZ_CP046023.1\|WP_122956776.1\|2533626_2534811_+\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|368695
NZ_CP046023.1\|WP_122956777.1\|2533034_2533259_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046023.1\|WP_122956783.1\|2497709_2502791_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|273865

Protein	Function_ID	Function_description	E-value
NZ_CP046023.1\|WP_122956782.1\|2505250_2516989_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|273865	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain. This model represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. Members generally have a signal sequence, then an intervening region, then the region described by this model. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.	1.85796e-15
NZ_CP046023.1\|WP_153976335.1\|2522464_2527558_+\|hypothetical-protein	gnl\|CDD\|376100	pfam18676, MBG_2, MBG domain (YGX type). This domain is found in a variety of bacterial extracellular proteins. This domain is related to the MBG domain (pfam17883). But it replaces the characteristic YDG motif close the N-terminus with a YGX motif.	7.53081e-11
NZ_CP046023.1\|WP_122956789.1\|2486432_2487458_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223157	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism].	2.25936e-31
NZ_CP046023.1\|WP_122956779.1\|2530914_2532609_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	6.4863e-96
NZ_CP046023.1\|WP_122956785.1\|2492145_2492859_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.11675e-54
NZ_CP046023.1\|WP_122957491.1\|2527848_2529744_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.48978e-43
NZ_CP046023.1\|WP_122956787.1\|2488993_2489590_+\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	2.26312e-09
NZ_CP046023.1\|WP_122956776.1\|2533626_2534811_+\|DUF898-domain-containing-protein	gnl\|CDD\|368695	pfam05987, DUF898, Bacterial protein of unknown function (DUF898). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative membrane proteins.	4.75529e-88
NZ_CP046023.1\|WP_122957494.1\|2485434_2486436_+\|cobalamin-biosynthesis-protein-CobD	gnl\|CDD\|377002	pfam03186, CobD_Cbib, CobD/Cbib protein. This family includes CobD proteins from a number of bacteria, in Salmonella this protein is called Cbib. Salmonella CobD is a different protein. This protein is involved in cobalamin biosynthesis and is probably an enzyme responsible for the conversion of adenosylcobyric acid to adenosylcobinamide or adenosylcobinamide phosphate.	4.84098e-92
NZ_CP046023.1\|WP_153976405.1\|2520287_2522450_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|273865	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain. This model represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. Members generally have a signal sequence, then an intervening region, then the region described by this model. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.	1.74596e-17
NZ_CP046023.1\|WP_122956784.1\|2493152_2497448_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|273865	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain. This model represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. Members generally have a signal sequence, then an intervening region, then the region described by this model. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.	2.46341e-17
NZ_CP046023.1\|WP_122956786.1\|2490227_2492180_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.23398e-40
NZ_CP046023.1\|WP_122956788.1\|2487454_2488918_+\|cobyric-acid-synthase	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
NZ_CP046023.1\|WP_122957490.1\|2529858_2530584_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.99666e-58
NZ_CP046023.1\|WP_122956781.1\|2517432_2520027_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|273865	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain. This model represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. Members generally have a signal sequence, then an intervening region, then the region described by this model. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.	1.24416e-18
NZ_CP046023.1\|WP_122957492.1\|2502818_2504729_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	3.04753e-42
NZ_CP046023.1\|WP_122956775.1\|2534813_2535941_+\|M48-family-metallopeptidase	gnl\|CDD\|320691	cd07332, M48C_Oma1_like, Peptidase M48C Ste24p, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	5.67073e-78
NZ_CP046023.1\|WP_122956783.1\|2497709_2502791_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|273865	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain. This model represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. Members generally have a signal sequence, then an intervening region, then the region described by this model. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.	9.66664e-16

>NZ_CP046023.1|WP_122956782.1|2505250_2516989_+|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MKSHASMNRIYRLVWNAALSLWVAVAENAKGRGKGGSARSSVLFGSAPAGAAEGGGAGSGFRLNSACRAALVLLTSLTVITHQARAADAANASVTAGAAGISTVGNTTTINQSSQRVAIDWTSLSTAANEALRFNQPNAAAIALNRITGSSPSELLGSLTANGQVFILNPNGVLFGAGSQVNVGGLVASTLSMSNADFMAGNHVFTGSSSSGSVVNQGTLTAANGGYIALLAPEVRNEGVIGATLGTALLAAGNKVTLHIDNGNLLGYSIDQAALNALADNRHLIKADGGQVILTASATDALLRTVVNNSGVIEARTLNNQGGVIRLEGGDSGVVHVSGTLDASGKGTGERGGRVQVTGDKVGLFDAAHVDVSGDAGGGTALIGGDFQGKNAAVKNASATYVSADANVNADAITSGDGGKVIVWSDGTTRYNGSISARGGADSGDGGFVEVSGKGLLAFKGEVDTSAANGHKGTLLLDPTNIWIAVDSASADAAAGYAVGDSSADGGAGQPFAASGAVDDSLLTTASLTAALANNDVVISTNNPDGAGAGNITVVDAVTYTGSRAGTLALVADNNIAINQSITSTNGALNVNAFAGGGFVGDISLANGAAINTNGGNVKLNARDITIGNGSGIVAGYVELNGQQDIIFNGTGAITAAGDVYLGGRNIQQGGTGIAVTADKLSIRSTGYIGNSGAAVAGDDKLNTQVNTLSAVAPGAISVSNTGALTVDTVTFQGTTPPHGGSIVGVSSTGGAISLATVDSGGATDSLTLNKAVSTTGGSANTITLNANDDYAQNAVTVSTVGANVAITAGGALTASGSGSSAIVTSGAPSSMDTNGSNAGDITLTANGGSINITGDLAAQGSNANANNTTGNAANAGGRGGNVNVTAAAAGAGIAIAGNVLANGGNGSGGGTNFAWNFGIGGNGGAIDIKTTSTSGAGTISVGNLSAQGGQAGYIGNGGSGGNVSVTTVATGAASITTGAISTWGGKYVGNSNPGNNGGNAGNVTLDTKGAGATIQFGNLDAHGGAGSLNRVNTNYSQNGGATIVSGTGGTVNIKTAGANADITGSGNVLSFVENAGCSNNSICSIGAAGNITMTASNGSVSLAGSANAKGGNAVGGGTLLANNGGAGGFVTVSAGGANHNVSIGSIDATGGNGLAGGAAGASKAVNVTAAAGYVQQVPGGWFNGATVAVTANQGIGAGTGAGDLSQRLGIIPVTGTAQNKNAGAAGSVRVIYGGGAVTLVGAQVQNTFTTGDLDIATSNGALTVNGLGRNGAGNISLSAGGGNDLTINGGTLSAIDGNIRLEAGRDVIFSGVGKATTNTGDLYVSAGANIQQADAVTMALTGNNLAVRAGGYIGAGAGGDNTLNTSVNAVSAVAGSNIGISNNKALAIDQVTFGGAAVPGGAINGVSTTGTGNVAVSTTAGALTVAAPVFVADGALTLAGATDVAVNAAVSSAIGAVHITAGSGSITGMHTVSAAGGVTLNAATGIDMDLVDSPSMTATSTSGSIRINLTGGTVENVSTTGDISLTSYAGLDVKTVSGANVTLTAAVGAITDANGTDNNITATTLTASAQDGIALGTDVSGLQTLSTTGATGDISISTANAIDTANYSISTDSGSAQNVSLTSSSASGITVGNAFAATNDNINLTATAGDINLTSAIGAAGLALSAQGSISAPAAINVSGVFDLKAGTFSQVGTLPTFSAGDFRITGGTFVRALAGDGLSTGTVYQIADVYGLQGAGSADMLNKNFKLANNIDASGTVNWNAGAGFNPIARGAQFFGTLDGGGHVIDQLVINRPGTDVGLISLMNGGTVSNLGLTGGSVTGDDTVGALVGRSIGTIINSHSSAAVNGSSRVGGLVGTNAGTISNSYASGDVSGSIYTGGLAGTNSGTVSGSYATGTVLGSNAGGLVGVNSNAISNSYASGAVGTASDHTTGGLAGINSGTITSSYANGLVQGSSETGGLVGWDNIGTVTASFWDTQTSGQAGSGGGGTGILTADMMKAQTFTDAGWNASNVGGDGTTWRIYEGNTGPLLRGFLTGLTLADTNVTYDGGTQAGATTGVVGVSGSNASARNAGSYLTGYYSNQQGYDIIGGGLDIAKANLTLSTSDVTKTYDGTLSAAGTAVATAGTALLGGDTASGGSFAFTNKNVGTGNKTVTAAGVTVNDGNGGNNYNVSYVDNTTSTIDKANLTVTATGVTKTYDGTTSATGTGSVGTLAGAGAGEVVNTAATQVFTDKNFGAGNKTVQASGLTIKDSGNVDVTGNYNISYVDNTTSTINKADLTVTANAVTKTYDGTTAATGTGTVAALAGAGAGEVVDAAGSQAFLDKNFGIASKSVRASGVTIKDSGNLDVTGNYNIAYVDNTTSTINKADLTVTANAVTKTYDGTTMATGTGTVAALAGAGAGEVVDATGSQAFADKNFGIGNKTVVASGVTIKDSGNADVTGNYNIAYVDNTASTINKADVTLSTSDVTKTYDGTYSANGTVVVTSGTIFAGDSATGGTFAFTNRNVGNGIRTVTTSGVTVGDGVNNSNYNVSYAENMSSTINQANLVLTTSDVTKTYDGTTSAAGTAVATGGTALLGGDIVSGGSFAFTDKNAGTGNKTVTAAGVTIHDGNSGNNYNVSYVDNTTSTINKASLTVTATGVTKTYDGTTSATGTGSVAALAGAAAGEVVDAAGSQAFLDKNFGIGNKAVRASGVTIKDSGNADVTGNYNIAYVDNTNSTINKADLTVTATGVTKTYDGTTAATGTGTVAALAGAAAGEVVDAAGSQAFTDKNFGIGNKSVRASGVTIKDSGNADVTGNYNIAYVDDTTSTINKANVTLSTSDVTKTYDGTTGAAGTVTVSAGTVFLGDSTTGGTFTFTDKNVGNGNKTVTTSGVTVGDGVNNANYNVTYADNTSSTINQANLTVTATGVTKTYDGTTSATGTGSVGTLAGAGAGESVNTAATQVFTDKNFGIGNKTVQASGLTIKDSGNVDVTGNYNISYVDNTTSTINKADLTVTATGVTKTYDGTISASGTGTVAALAGAAAGEVVDAAGSQAFADKNFGIGNKRVVASGVTIKDSGNADVTGNYNINYVDNTTSTINKANLSLSTSDVTKTYDGDFFASGTVVVVSGTVFAGDSTSGGAFSFIDKNVGTGNKTVVTFGVTVGDGVNNGNYNVSYVNNTTSTINQANLTLTSNNVTKTYDGTVAASGTATVSSGTLFAGDSLTGGSFAFTDKNAGNGNKTVTTSGVTVGDGFNNGNYNVTYADNTTSTINKANLTVTADAVTKTYDGTLAAAGSGTVGALAGAGAGEVVNTAATQTFTDKNFGIGNKTVQASGLTIKDSGNADVTGNYNINYVDNTTSTINKANVTLSTSDVTKTYDGTTGATGAVVVTAGTVFAGDNTTGGSFAFTDKNAGTGNKTVTTTGVTVGDGVNNANYNVSYVDNTTSTINQAGLTLSTSNVTKTYDGNTTAAGSVTVTGGTLFSGDSLTGGSFAFTDKNAGNSNKTVQTSGVTVGDGVNNGNYAVTYADNTTSTINPFAVSVSGTRTYDGTVDVAAGVLNIGPLVGSETLGLSGLATMADKNVGANKTLTVGGLSLTDGTGLASNYTFTGGTQQASVTQASLTVGSANVTKTYDATTTAVGTATVTGGTLFAGDSLTGGTFAFTDKNAGTGNKTVTASGVTVGDGVNNGNYAVTYTNNTTSTINKADLTVTASGVDKVYDGTTAATVGYGDNRLGSDVLSIMGVASFADKNAGTGKSVGVNSIAVGGTDAGNYNLLNTTATTTASITPKALTVTANGDTRLYDGSAYSGGNGVSYNGFVAGDSASDIGGSLAYGGSSQGAVAVGNYVITAGGLSSISGNYTLGFVDGALSIQTSNASTAAVGNAGLVNSYDSALQAIAGLGASLSGGGGGGGFGGSAAADALAAAAAEAGNTDEK
>NZ_CP046023.1|WP_122957492.1|2502818_2504729_-|sensor-histidine-kinase
MLAALLPAPASLQPLTADALHITAAELLAVDGRAFSPPPYALQAGTPPGAWQKVSLPHALPRQLIPDRDDAEAPQTVVTWYRAQLPARPASREPQYLYVPRWKSDGQIAVYGDGRLVYQSHSNLLWNGSNHPLWIALDGTADAAPVQTIVLRIERLRTTGGAISSLWVGDEAAIGWRYRIRDALQIQLPLMSSAAFLAVGMFALSVWMRQRRVSGGASLYLLFFIISVASYLRCLHYYVGQHRLPVSDEWFGWFTINSLFWLIAAAHFFLVRLHRQQQPWLNRSVLLLTAAVGVLTLPVFAGNWPGATALAPLAYLFVLVMGITAFGYGLANAWRARSRDGMVLAGWSLLSMGIGVYDWLLQNNHVSVEGSFLGSYANVGAFFIFVYIMFQRYTRAIEEARQVNAGLEQRLQAQEAELNRSHALLREVEQRQMLSQERQRLMQDMHDGLGSSLVSALRVVERGRLEDIQVAEVLKSCIDDLKLAIDSMEPVEADLLLLLATLRFRLGSRLESTGIALRWEISDVPTLDWLDPRNALHILRILQEAFANILKHAQASEIRVTTAAGDGWVYVGITDNGKGFAVEAALDNGRKGGKGGKGLSNQRRRAQAIGGDVAFESSAAGTRLTLRLPVQRPVTA
>NZ_CP046023.1|WP_122956783.1|2497709_2502791_+|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MKSHASMNRIYRLVWNASLNLWVAVAENARGRGKGGSVRSSVLFGSAAMGDAASGFTLRAACRAALVLFTSLSVLTNQAHAANAADASVTAGSAAISTVGNTTTIHQTTQRAAIDWTSLSTAAQEALIFNQPNAQAIALNRITGSNPSELLGSLIANGQVFILNPNGVLFGAGSQVNVGGLVASTLSMSNADFMAGNHVFSNNRSSGSVVNQGNLNAGQGGYLALLAPEVRNEGVMTASLGTALLAAGNKVTLNLDNGSLLGYSIDQGAINALAENKQLIQADGGQVLLGAKALDSLTTATVNNTGVIEAKTIANKAGRIMLIGDMEHGMVNIGGTLDASAPDGGDGGFIETSAASFKILPGFRVNTRAPQGKNGNWLLDPATMTIAAGNGGAANTIYEDFLESVGADMTIEATDSINVTGNFTNADVDMPTGLSLTIKTTGPTGTGIDLTGSGDGAALTFKTSGGGALVLSTASATQAIKSSGLAVTSGAGTITVNSAGALDISNAIVQSSGGAISLTGAGQTGSSGVLVSQGTVNAGTGALTINGITADMAQYGVLLDRATLTSGNANINSASSAIKLMGSSLTSSGNISIDASNANSSHHAVELVNSGATQTNVRVTGGGTINITGNLKSGGGSATGGSAGGVVISDSNVTGGSGAVTVNGDVSLPILAGQVSRGVRLDSLAKITGAGNIDITGRVVFGILTGSAGAELGTGSEVSSTGGNVTVTGRGTSANGVVTESYGLMARGKVQSGTLRGITLDGSSNLGAAGISGSGVLIDAGADIIAGRQGFSSTGIFSVSGGGTPTINGISMVGGSINSTGPVTMIGSLGGVSSMGGGHAVSLTGGSINSNTAAMTLRGMNFPAAAIAPAGSYALNIDGTSITSGGGAITLMGDRINIGSAVNAGAGKVVVSADFLNNSRSITLGGASETTAMNLSNAELNRITASVIEIGSTLNTGGISIGDTGGAINLASAPILSLLNDSTSGTITQTAGLTAANLNVDAGSVALSNTANQIIQLSGRGYGTNNFQVRSASALSVGTVDGTAGITHSGTGRVMLHSSGAVSQTQAIVADTLQVTSFGGMTLTHAGNRVQNFGNLTNSTSGNLTLRNTAATASFLNFIFSQGRVDIANTGNIFLGGSALATSSTASGTTAGTAGFSVVATGGISAQTISPNIWTSSGGSVYLEAGNGSIGASTAAPVNIWDATSVTAVANGGASQVNLSLNNGATLENISAPGAVSVTAAAGNLAVKTVAGSSVTLSAAAGSITDANGAANNITATSLNASARDGIMLGTNVTGLQTLATTGATGDITIAAANAVNTSNFGITTNAGSAQTVSLLSGAGITVDAAFGNAQDKLKLTTTAGNIAINGALTASELTLNTAGTSTQTAAITATGLELLGTGSHTLDHAGNAVTTLAGNTGDASYTQAGALAVGTVNTAGLTATGKVLIRTTGAASDLTLNNSVASGSAANDALVLAAGRNFVNNAGAGALNPGAGRFLVYATDPTANTLGGLVSTGNAFGRTFAANAPTDASMTSLTGNRFVYSVVPTLNVRGDNVSKAYGGADPALTYTVNSGLVAGDTAASALGGALSAPTGAATTGPTHAITQGTLASALGYNVVYTNGTLTMTGTPPLPASLFGVTGVLDGPYVTAINTVTSADKDLGSDIDGESTVSSDAALIKALNDAAAENAALAGGE
>NZ_CP046023.1|WP_122956784.1|2493152_2497448_+|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MKSHASMNRIYRLVWNTALSLWVAVAENAKGRGKGSPVPGGLAPAALQAGGFRLNTACRAALVLVAALAAPAHEALAANAADASVSAGAGSVSTLGNTTTIHQASQRMAIDWTSLSTAAQEALIFNQPNAAAIALNRITGSSPSELLGSLTANGQVFILNPNGVLFGAGSQVNVGGLVASTLSMSNADFMAGNHVFTGSGGSVVNQGTLNAAPGGYLALLAPEVRNEGVMTASLGTALLAAGNKVTLNIDNGSLLGYSIDQGAINALAENRQLIQANGGQVLLSARAFDALSSGVVNNAGIVEAKTLNASKGRIALEGDFIVQAGTLDASGAEGGRIDLKGRAILDAGTANASGAAGEGGSIAYRATQAIVQTASANLKADGATQGGAISLQGDESFFSSGTLSATGQRGGTIDTLGNRVSLAAARLDASGSERGGLIRVGGGFQGRDAGVMNAQTTFVNGATTLKANGANGEIVVWSDGQTDYYGSASATGAGRIEVSGKGQLTYGGQADAGVGGTLLLDPANIIISDTAGPAAYALVDPHATPGNQFGANTTLLGTTTNGVFTENGKAVITVTTDSLAASNAGAVYLFDTTTGALVSTMTGSRANDRVGTSATALSNGNYVVRSQFWSNGAVAAAGAATWGSAATGINGVVSTANSLYGTTANDNVGNREVIALTNGNYVVRSSIWDNGAIADAGAATWGNGATGTAGAVSAANSLVGSTASDNVGLFGVTPLSNGNYVVRNPNWDNGAVVNAGSATWGNGTTGVSGAITAANSLVGSTLNDNVGGTITALTNGNYVVSSTQWDTGGLLNAGAITWGNGATGTSGVVSAANSLVGTSNNDLTVAAIALSNGNYVVNAPNWSSGGVRVGATIWGNGSTGLTGNITLANSLHGTHDGDYIGSVVTALPNGNYVVSNRLWDNGAISNAGAVVWANGATGITGDISTANSLYGTQASDQVGSGNGTGVTVLSNGNYVVSSPVWDNGAIADAGAATWVNGATGLVGPVSAANSFVGLQANDAVGNYGITALTNGNYVVRSPLWDSGALVNVGAITWGNGSTGLVGSINAGNSLLGSSASDFLGSDGVTALANGNYVVRSSQWDNGGVVDAGAVTWGNGSTGTTGVVGAANSLVGSQTNDKVGATGVTALATGDYVVSSSRWDNGALTDAGAVTWGSGAGGVSGAVNSLNSLVGTAANDRVGFKAVDSSTGLDISAVTPLGNGNYLVASPNAGGNNGQVLMGTPRGISYANGTGQTMSFNPSALSATLAGGTAVTLQASNDITVNSNINVAGTAGGALNLQAGRNINLNSVINTANGAFTASAGDAGALPADRQAGAAGINFGAGSAINAGTGVVTLRVNGVWVGGTPLPVATSTSGGELMAQYSAVLQGMQAEQGENLLNPRQQRSVGDRPEGTATRVEGCGVRMPVGFDADEC
>NZ_CP046023.1|WP_122956785.1|2492145_2492859_-|response-regulator-transcription-factor
MQSSPTPPLIHVALVEDDVHFQNAIVTAIAASPDIRLMSLASTRAQGLQSLQSAPADVLLVDLGLPDGSGIDVIHAAHERWPTCAVMVCTAFGDEAHVLQSIEAGASGYLLKDSEPENMLDEIRSLHGGGSPISPLIARQILMRFRASPAATAPLSLSTSAAPAAVPATGENAVLSAREKEVLELITKGFTADEIARLMQVSQHTVQTYVRRIYSKLNVNSRAEAIYEARHQGILAA
>NZ_CP046023.1|WP_122956786.1|2490227_2492180_-|sensor-histidine-kinase
MKPGTRAFWRPDVLARFVRLLLVCGGLLAAGPWAWAADAVVHYTRAEMLREEGPRFKPLAAQVDEAALPGNWTTVELPLVIPKSAALPAASPAASGTAKPPLVTTWLRVRLDELQGMRTPTHFYLIRWLAAGQIAVYADGKLRYRSTGSPVWNLFNHPALLLPLNLTADSAPPRTLLIRMDSLPSPEAAISSFYAGDSNSLIEMAAKRDWLAYQLPFMSSAAFLAVGIFSLAVWVIRRHPASLLLFVIALMGAIRRWHFQLGPEKLIVSDAWFIWLTLNALMWQLLALHHFMQLLHGRVMRRLGWLMLGIAVVFSVITLPFASLVPSLLVIRPYAHLLLISMGTVVTAIGLWHSWRSPSPDAKMLSFALLISYVFGFYDWARLKYVLDLESYYLTPYAAMILFAVFVVIMFRQYVGALATVEQLNSGLEERLKNRETELAASYEKLREAEQRQTLSQERQRLTQDMHDGLGSSLVSALRVVEGGRLSEADVAEVLRGCIDDLKLTIDSMEPVEADLLLLLATLRFRLGPRLAGAGVSLQWEISDVPPLPWLDPRNALHILRILQEAFTNTLKHTRATQMRVTTGAQDGYVTVTITDNGGGFPVDQALAGGGKGLANQQRRAQAIGAEIVLTTNDAGTTLVLKLPEKRLPG
>NZ_CP046023.1|WP_122956787.1|2488993_2489590_+|DUF4124-domain-containing-protein
MHMLKKQWRTILMAAALLAVWHGGQAQPVYKWVDASGKTHYGSQPPPSDKEVEPMKLQGGRGTGSSTSSTSSTSSTSSTSANNLGGTKPIPKDTRELMSGMEVALKKVDPKSVPLSCGTAVENVRSQVKTMLETGQRNVQQGYTGAAEFEGVASKLREGLSKTTPADCESATGNKKLFYQCMSSDRNHVIGCGSKYKY
>NZ_CP046023.1|WP_122956788.1|2487454_2488918_+|cobyric-acid-synthase
MTAKSVMVLGTTSGAGKSWLTTALCRYYARQGLKVAPFKAQNMSNNARVVAQGEIGSAQYFQSLAANAVPDVRMNPLLLKPEKDTQSQVVLMGQVNAELSRMEWRGRSASVWPVVARALDELLEENDVVVMEGAGSPAEINLKASDIVNMRAAQHANAACLLVTDIDRGGAFAHLYGTWAMLDESERQLIKGFVLNKFRGDARLLAPGPQMLQDMTGIPTVATLPMWWQHGLPEEDGVFDDRSVASGAVTRTVAVIAYPRISNLDEFQPLKNVPGVRLKWVRSPADLMGADWVILPGSKHTSGDLAWLRAQGLDQAVAAHAGRGGAVLGICGGLQMLGEALIDPHGIDGNAPGLGLLPVVTVFDEAKTVQHRQAAFTPLHGLWTGLSNVEVQGYEIHHGQTAPHSAMAAAGDVAYAVMPEGLAWQNQAGNVLGLYLHGMFEDPRVLKALFGAAVPTLDSVFDGLADYIGEHFAPGVLDSLVSGPARA
>NZ_CP046023.1|WP_122956789.1|2486432_2487458_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MSAGLARHARIHGGPDGLGVPLHDFSTNSNACGPCPAAQAAVSRADATRYPDAGYTALRAQLAAFHQVDEARVLLAGSASEFIFRITALAVQGGARSAWLPPMSYGDYAQAAAAHRLAVAGQPADAQLLWACEPSSPAGAAQAGLQALAAEQKAHTFVVLDRAYEPLRLGSAPTLSPQQLQTTWQIWTPNKALGLTGVRAAYAIAPVGRVDAAQALEQLCPSWPVGAHGVAMLQAWTGREAQDWLAASLETLREWKARQIGVCESLGWKCLPGEANFFCAQPALPEGLDLQQALAALRASGIKLRDTTSFGLPGHVRLGVLPPGAQDDLHNAWQQLIKASQ
>NZ_CP046023.1|WP_122957494.1|2485434_2486436_+|cobalamin-biosynthesis-protein-CobD
MAWVPALVPALVLAFVLLLALWIDQHFGEPPANVHPVVWMGNYLRLCGSVTVRCAPAPAFLLGALAWWVGVLVVGALGWSLQVLLFWQVGEYRAHPDLPNGVEAALVAVLVAWALKGMLSWRMLREEVGAVELALGQSLDAGRERLSWLVSRDTTQLTEGQVRESAIESLAENLNDSVVAPIFWFVLLGLPGAAVYRFANTADAMWGYRGVYRGKNWEWAGKWAARADDVLSWAPARITALLLALAAKGLPLRALRQEARKTPSPNSGWPMAAMALALGISLSKPGVYSLNPQGRSPGAADVVQAQNFGSKVLQALMYVALIAMIFVAIGAWS
>NZ_CP046023.1|WP_122956781.1|2517432_2520027_+|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MNSHASINRIYRLVWNAAASLWVAVAENARGGGRAGAGVAGAFILNAALLMVGAPQAWAADAANASVSAGAASIATAGNTTTINQSSQRVAIDWTSLSTAANEALIFTQPNAQAIALNRITGSSPSELLGSLTANGQVFILNPNGVLFGGGSQVNVGGLVASTLSMSNADFMAGNHVFTGSGGSGPVVNQGALNASPGGYLALLAPEVRNEGVMTASLGTALLAAGNKVTLNLDNGSLLGYSIDQGAINALAENKLLIQANGGQVLLSAKAMDKLTTATVNNSGVIEAKTIQNKAGRILLMGDMETGTINVAGTLDASAPDGGDGGFMETSAAHVKVADGAKVTTLANSGKHGTWLIDPTDFTIAAGSGGLTGSGIGATTLATNLNLGNVALATNNGAGTENGDIHVNSAVTWNAGTTLTLSAWRNININASITSQHANGKLALEYGLGAVNAGNTATYNVRAPVNLRAGDNFSTRLGSDGATDPYKVITSLGAAGSTTGTDLQGINGAPALNYVLGADIDASDTVNWNAGAGFDTLGGVGAPGIFEGRFDGLNHKITNLFINRPGDNFVGLFGLTQSTSIRNLGLVGGSITGADFVGAIAGQGCCTTFTNIYSTASVTGNDEVGGLVGELSDGGITDSYATGAVTGADKVGGLVGTSIDGTITRAYSTGLVTATGAAGGLVGEQIGTASTSNSYWNITTSGQATSAGGTGRTSAQMMQAATFAGWDMATQGGTTVVWRIYEGQTGPLLRSFLLPVTLPDTSVVFNGAQQSGAGAAGVTAASGANPGIYNAWSTQEGYDITGGTLTIRPTGSGSDFLADEAYRSAMVYLAGVARAANAQARPGADALAGALSAAAAEAADEGGR
>NZ_CP046023.1|WP_153976405.1|2520287_2522450_+|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MKSHASMNRIYRLVWNAALSVWVAVAENAKGCGKGGSSRSSVQRDAVQAQGGATGFTLNTACRAVLVLLTSLAVLTHEARAADAANASVTAGAAGIATVGNTTTITQGSQRVAIDWTSLSTAAQEALIFNQPNAAAIALNRITGSSPSELLGSLTANGQVFILNPNGVLFGAGSQVNVGGLVASTLSMSNADFMAGNHVFTGSGGSVVNQGTLNAAPGGYLALLAPEVRNEGVMTASLGTALLAAGNKVTLNIDNGSLLGYSIDQGAINALAENRQLIQANGGQVLLSAKAMDSLTTATVNNTGVIEAKTIQNRAGRIMLMGDMETGTVNVGGTLDASAPNTDGMGGNGGFIETSAGHVKVGSDARITTLAAAGGGGRTGKWLIDPNDFTISAAGNISATTLATQLLGTDVEISTVTQGTAGGNGDIHVDQAINRTDSNTLTLTAERDINVNASMGKNGGGAAGLTLNAGRNMVFTGNITSTSGALAMTANAGGDITGGGTLNLNGGAMDLTAGGSIGSIDGLGQIHAGSLKMKATAGELVTNSGITWNAGSFDLFAGTNIRGSDPGSALIAVMTSPGGSFTASSGNTGNGSMRLNSSSNAIGTLNLTALGTGGGGQIDFTSDRAVSNAFITAARDVNVSSSNGGLFNINSLNLVGVNQNVSLGAGSGVLMLNGAVNTGAGNLTLSGSALSLGGALNANNLSLTATNGMSINSDLTATGT
>NZ_CP046023.1|WP_153976335.1|2522464_2527558_+|hypothetical-protein
MGIQQTGGALTVGGATSVNAGAGVVNLGGGGNNFTGAVSVTNLGLNNVTLNAVGNPLTLGTLSLGSGTLNITGNNITQTGAITQAAGAGAVTINGGASAINLSNTGNNFTGAVALSNTGNNAVTIRDVDDLKLGASTVGGSLTAISSSGSISQSDTLNVTGASTFTINGFNKDVLMGTSANTFLGGVTVNGSGNVKDMAFRYGTGFAFPTAPSYMGTLTLIRDVGAIDLVGLQNFSGGLSLTAGGGINRLGGTLQTGGAQTFNSAVNVIGPANLVSTGGTIRFESTVNGANTLSTNSFGNTTFAGAVGGTTALTSLSVTAGGAITVQNGATLRAGDVKLSAASGIGNDLGGAASVDAARLSAINTSTGHLLLAHTGTGKVVVTNLGMGDGIQNQAAGADVSLTASNGAIQVLGSKVSAAGGSLTLSAAGASDAHSLEIVNNGATQSTVSTTGAGTISLSGSLTSGGASATGGSAAGVAITNSNITGGTGAITITGSAGGTGRGGQVERGFRVGTGSTITGAGSVTLTGTVTGDQIMTPDPYTGPASMGGELANGATVFSTGGNVALSGTMNNAQHYGGTGLSVDGRVETGAAGKVTLTGTATTGGAPAGSAGTGLLTGASSQIIAGSGGLDITGTVNSSYASTSLAGASLNGSATSAGNVTATGTVAAPAATGATALLLGGGSLAATGAATVTLKGSGVANLAGSLPSSYDLSLITGTAVSTAGGQVNLTGNRMQIDGTVNSGAGVTAITANDDNWKITLAGGLSNSEQVGLNLSNSELNNITASVLRLGSSAANGGIEIGNTGGAVNMTSTQSLSLLNSASIGNILQTAGFKVANLNAEARTVTLSNPNNQFSQVSGRAYGGNFSLRSNSALSVGTVDGTAGIHGAGAVVLTTTGGALSQTQAIVANVFQAATFGGMTLDHAGNQIQTFANFNNGTSGDIVIRNSVDATFIGSIANNGAGSGRIDIGNTGAITLGATADFSSANASGGGAAATAAVSVVATGGISTVAGSKITNAAGGSVYLEAGNGNIGTTPGDAVTLSTSGSVTAVASGGASQVNLALAGGASVENISAPGAVSVTAAAGNLSVKTVAGSAVTLGAAAGAILDANGAANNITAATLNATAANGITLGTNVSGLQTLTTTGATGDISIAAANAINTGNFSITTNAGAAQTVSLSSAAGITVGSAFGNTQDKLKLSTTAGNIAINGALMASELTLNTAGTSTQTAAITATGLELLGTGTHTLNNAGNAVTTLAGNTGNAEYSQAGALTIGTVNTAGLTASGKVLVRATGAAGDITLNNTVTSGSAASDSLVLAAGRNFINNAGATPLNPGAGRFLVYSTDPTANTFGGFASTGNAFSRTYAANAPTDASMTSITGNRMVYSVTPVINITGDNQTKVYGAADPTLTYTVGSGLVAGDTAGTVLSGLLAAPTGAAASAGTHAITQGALAAALGYGVSYTNGTLTVDKATVSVTGVAANNKTYDGNATATLGNIGTLTGLAYGELLALSATGASFSDASAANGKTVTASYSVADGTGLASNYQLAAAPVTTTANIDKANLSITANNDSRTAGGAAYTGGNGVSFSGFVNGETAAVLGGALAYGGSAQGATAAGNYAITAGGYTAGNYALNYVDGVLTINPVPVAPAGQGSGAPVSDAYLSALYNVANSGGGGGGGSGGGADPSDALRAAAAEAGNTGEE
>NZ_CP046023.1|WP_122957491.1|2527848_2529744_-|sensor-histidine-kinase
MAGALLVTVAALAALDIRPAGADTQESLHITGAQWQVVDEPGFSTAAPTQDSASLPAAWQAATLPHALPVSLVRQAAASTPGTTRTTWFRISPQRLPGMRAPLALYGARVRTDGTVAVYADGQLVHTAQQQGPLWNSPRVPLWVPLDKTADGNPPREILIRLEHTRASQVALSSLWLGAADALSWRHSWRHWLQLELPSMFSTAFLAVGIFALFVWFKRRHRTDYLLFFALAATSFLRGLHFYVGFPIANDWFAWLTVNSLFWLVVMVHFSIVLLHQRRQPWVTGSLVAVTVLMGLLTLPASAPLPNTPQVTPLIYGVVALMGVTVSLAGAISAWRSASGEAMLVAMGTALCTVFGAGDWLQQSNFTSPEGWYLGAWTNAISFSIFGALLYRRYVGAIVEVEQLNASLAERLRAREVELEMSHQRLRAVEQRQMLSDERQRMMQDMHDGLGSSLISAIRSVEHGGMSDAKVSQILKDCMDDLKLAIDSMEPVEADLLLLLATLRFRLEPRLEGSGVTLFWEVQELPTLQWLDPSSALHILRIVQESVANILRHTRATEIRVATATADGGVQVTIEDNGQGFDVQAALAEASGKGLHNQQRRAQTLNGKVAWKSGPGGTRFTLWMPLARTLA
>NZ_CP046023.1|WP_122957490.1|2529858_2530584_-|response-regulator-transcription-factor
MQALNPQTQEQPAPLDGTGPRIHVAIVEDDLGFRGALARALLAAPDMTLAGTAGTQAEGLALLQGPPVDVLLVDLGLPDGSGIEVIRAAARQWPSCSIMVSTNFGDETHVMRSIEAGAAGYLLKDSSQAKIVDEIRSLASGGSPISPIIARQVLARFRQDATAGAAPGTEPPGDAPQLLSAREKEVLDFITKGFTAVEIAKLMGLSHFTVRTFVRRIYSKLKVTSKAEAIYEARSQGLLAQ
>NZ_CP046023.1|WP_122956779.1|2530914_2532609_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MKKMTFNSLPLSTLTSALMLALYGSAWAQTPPVPDAGQVLRDLQQARPSPPQQSAPLQRIDETADLSQAGEAKVMVKSIAITGNKEIPTEQLQPLVAGLVGAERSLTQLNAAARRITAYYRSQGFAVARAYLPAQDITDGAVTISIIEGRISSHKINNQSLLSDERAQAYLGQVKDGDVIKSDQIDRGLLLLQDTPGVSNSRATLQPGASVGTSELLIEVNPSRPYSGNVTLDNYGSRYTGEYRVAGTFTLASPLKIGDQLMFNGLTSGSRLSFGRVAYQLPVGSDGLKVGAAYSDIHYKLGQEFEALQAHGTATSASVFAAYPFIRSQFKNLNGTIALEDKRLKDYVDGTGTFTPKKVTVTSFGLSGSLQDALGGGGITGLDLSLILGNLSINSPTALAIDNASARSNGSYTRMTYGANRLQRFTDSTFLAASVSGQTASKNLDSSEKFSLGGINAVRAYPQGEASGDEGYRATVELRHNVMPNVQATVFYDWGKITINRNPFGAPASNSRNLAGVGVGVNASLGPVQLRSSLAWRTDGGLPTSIPASAAKRPTLWLQASMPF
>NZ_CP046023.1|WP_122956778.1|2532790_2533054_+|hypothetical-protein
MLHSWFLPVVGAASLLAIYLSVSMHKALKERSAVDPQARRELCILFLLGAGDAYGLRLLRRFAMAANVHALSFGMAIGLVVFSVIRF
>NZ_CP046023.1|WP_122956777.1|2533034_2533259_-|hypothetical-protein
MQLSRHPPPPTRTPVTPFLPQQQSRAAASWPFYVQAPRPLSRDIKANAARVLETSARYFFTAPAADSSLKNGSR
>NZ_CP046023.1|WP_122956776.1|2533626_2534811_+|DUF898-domain-containing-protein
MEPVLDPGMPLAQPQAPHADETHKLSIEFTGSGSEYFRIWIVNLLLLMVTAGIYYPWAKVRRLRYFYGNTVVGGEPLGFHADPTKLLKGYLLVGLLFMLYSAAGKFSAIAGFIAFLIVAALWPALLKSSMQFRMANTSWRGLRFGFKGSLEGAYRAVLPLFVPGVVILAAATQVADPEKPPLWYLQVLGVILLVSLVVAPWLLWNLKQYQHNSYALASLQTTFKATLGSFYKLFFKILGLAVLPLLVSGGIAGAIIYAVKTGGAQGRPSVGLFMLAALVPLAVMMVLLVLVKPYATARFQDLVWTRTGNVSLRFISRLGFRSLLWVTLKNWFLIVITLGLYWPFAAVALARIRLEAVTVKTRVSPDTLIAMAGAVEGDAAGEAGGDLFGLDIGF
>NZ_CP046023.1|WP_122956775.1|2534813_2535941_+|M48-family-metallopeptidase
MTAATHPPASQAPTLAASYFDGASARARPVTLQIEGDELLITGEGLHRRVALRKVQWPERTRHGTRVAHFTEGGSVQCADAGAWDDWSRASGRRDSLVVTMQQSWRWVIASAAALVLLLVVIQQWGLPVAARAVVAVTPLSVDSSLGETSLTVIDEHLMRPSKLPLAEQARLRDAFAKAVSAMPPGSVPAWQLVFRRSRIGPNAFALPGGTMVMTDELVELVGRDDKVITAVLAHELGHVRHRHGLRMLIQATALSGLAAMVVGDFSTVLAGVPVLLGQASYSRDAEREADHEAVRILKAAGISPAVMVTLFEKIAAQRNEAAGSGKGAKPGEPVDASPPGDRGPEQESGLGIAFASHPADAERIRYFQEAAGER

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Crispr_ID: NZ_CP046023_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046023_3

2557969-2558114

Orphan

Consensus_repeat	Method
GCCGCGGAACCGGCTTTGCCGGGCCGCAGGGCGGGCGGCCCCCTCGGGGGGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046023_3

>merge|NZ_CP046023|3|2557969-2558114|CRISPRCasFinder
GCCGCGGAACCGGCTTTGCCGGGCCGCAGGGCGGGCGGCCCCCTCGGGGGGCAGGGAGCTACACGAAGTGAGCGACCGTGGGGGCTAGTTCCGCCGCGGAACCGGCTTTGCCGGGCCGCAGGGCGGGCGGCCCCCTCGGGGGGCAG

>NZ_CP046023|3|3|2557969-2558114|CRISPRCasFinder
GCCGCGGAACCGGCTTTGCCGGGCCGCAGGGCGGGCGGCCCCCTCGGGGGGCAG	GGAGCTACACGAAGTGAGCGACCGTGGGGGCTAGTTCC
GCCGCGGAACCGGCTTTGCCGGGCCGCAGGGCGGGCGGCCCCCTCGGGGGGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046023.1\|WP_122956754.1\|2561734_2562352_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|366609
NZ_CP046023.1\|WP_122957488.1\|2555819_2556296_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|376811
NZ_CP046023.1\|WP_122956751.1\|2564478_2565576_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223652
NZ_CP046023.1\|WP_122956753.1\|2562583_2563429_+\|N-formylglutamate-amidohydrolase	unknown	unknown	gnl\|CDD\|377442
NZ_CP046023.1\|WP_122957487.1\|2560045_2560528_-\|multidrug/biocide-efflux-PACE-transporter	unknown	unknown	gnl\|CDD\|226610
NZ_CP046023.1\|WP_122956766.1\|2542697_2543507_+\|DUF2726-domain-containing-protein	unknown	unknown	gnl\|CDD\|115279
NZ_CP046023.1\|WP_007866319.1\|2558155_2558893_-\|two-component-system-response-regulator-OmpR	unknown	unknown	gnl\|CDD\|181883
NZ_CP046023.1\|WP_122956765.1\|2543521_2543809_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_CP046023.1\|WP_122956757.1\|2556415_2557792_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531
NZ_CP046023.1\|WP_122956756.1\|2559290_2560007_+\|DUF541-domain-containing-protein	unknown	unknown	gnl\|CDD\|226002
NZ_CP046023.1\|WP_122956752.1\|2563441_2564482_+\|histone-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|212525
NZ_CP046023.1\|WP_122956761.1\|2548745_2550599_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP046023.1\|WP_122956750.1\|2566490_2567492_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP046023.1\|WP_122956759.1\|2551390_2554891_-\|transcription-repair-coupling-factor	unknown	unknown	gnl\|CDD\|224118
NZ_CP046023.1\|WP_092127949.1\|2565589_2566372_-\|3-hydroxybutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|237100
NZ_CP046023.1\|WP_122956755.1\|2560676_2561579_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP046023.1\|WP_122956763.1\|2546615_2548208_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|226070
NZ_CP046023.1\|WP_122956760.1\|2550683_2551394_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_CP046023.1\|WP_122956764.1\|2543805_2546604_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|377898
NZ_CP046023.1\|WP_122956762.1\|2548303_2548630_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP046023.1\|WP_122956754.1\|2561734_2562352_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|366609	pfam01389, OmpA_membrane, OmpA-like transmembrane domain. The structure of OmpA transmembrane domain shows that it consists of an eight stranded beta barrel. This family includes some other distantly related outer membrane proteins with low scores.	2.09634e-17
NZ_CP046023.1\|WP_122957488.1\|2555819_2556296_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|376811	pfam02542, YgbB, YgbB family. The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).	3.10964e-95
NZ_CP046023.1\|WP_122956751.1\|2564478_2565576_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223652	COG0579, COG0579, Predicted dehydrogenase [General function prediction only].	5.02424e-104
NZ_CP046023.1\|WP_122956764.1\|2543805_2546604_+\|PAS-domain-S-box-protein	gnl\|CDD\|377898	pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling. This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules).	1.8012e-54
NZ_CP046023.1\|WP_122957487.1\|2560045_2560528_-\|multidrug/biocide-efflux-PACE-transporter	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	2.14598e-59
NZ_CP046023.1\|WP_122956766.1\|2542697_2543507_+\|DUF2726-domain-containing-protein	gnl\|CDD\|115279	pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster.It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes.	0.00311199
NZ_CP046023.1\|WP_007866319.1\|2558155_2558893_-\|two-component-system-response-regulator-OmpR	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	6.2004e-159
NZ_CP046023.1\|WP_122956759.1\|2551390_2554891_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP046023.1\|WP_122956757.1\|2556415_2557792_-\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	5.54485e-62
NZ_CP046023.1\|WP_122956756.1\|2559290_2560007_+\|DUF541-domain-containing-protein	gnl\|CDD\|226002	COG3471, COG3471, Predicted periplasmic/secreted protein [Function unknown].	2.15857e-26
NZ_CP046023.1\|WP_122956753.1\|2562583_2563429_+\|N-formylglutamate-amidohydrolase	gnl\|CDD\|377442	pfam05013, FGase, N-formylglutamate amidohydrolase. Formylglutamate amidohydrolase (FGase) catalyzes the terminal reaction in the five-step pathway for histidine utilisation in Pseudomonas putida. By this action, N-formyl-L-glutamate (FG) is hydrolyzed to produce L-glutamate plus formate.	8.9143e-60
NZ_CP046023.1\|WP_122956761.1\|2548745_2550599_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.03602e-148
NZ_CP046023.1\|WP_122956750.1\|2566490_2567492_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.68949e-13
NZ_CP046023.1\|WP_122956752.1\|2563441_2564482_+\|histone-deacetylase-family-protein	gnl\|CDD\|212525	cd10001, HDAC_classII_APAH, Histone deacetylase class IIa. This subfamily includes bacterial acetylpolyamine amidohydrolase (APAH) as well as other Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. Mycoplana ramosa APAH exhibits broad substrate specificity and catalyzes the deacetylation of polyamines such as putrescine, spermidine, and spermine by cleavage of a non-peptide amide bond.	4.62204e-141
NZ_CP046023.1\|WP_092127949.1\|2565589_2566372_-\|3-hydroxybutyrate-dehydrogenase	gnl\|CDD\|237100	PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional.	1.83733e-146
NZ_CP046023.1\|WP_122956755.1\|2560676_2561579_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.07015e-37
NZ_CP046023.1\|WP_122956763.1\|2546615_2548208_+\|alkaline-phosphatase	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	1.91315e-149
NZ_CP046023.1\|WP_122956760.1\|2550683_2551394_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.52572e-93
NZ_CP046023.1\|WP_122956765.1\|2543521_2543809_+\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	2.45026e-08

>NZ_CP046023.1|WP_122956757.1|2556415_2557792_-|HAMP-domain-containing-protein
MDATNPAPLETAPAPLEMRPRRGFSLFWRTFFFLSLLLFGSIVAWLQTFRALESEPRAIQSAQQLASLVNLSRAALRYSDSIARVSLIKTLADEERVRITPREPKDKYELFESDELGERTAEELRARLGGGTVVASSVNGQKGLWVGFAIDGDSYWLLTDPSKIGPSRNSTWIIWLITAAILSLAGAAFIARLINRPLKQLSFAASRMRDGDFDASLLDEKVATSEIREVNIGFNRMAEQLSKIEQDRVIMLAGISHDLRTPLARLRLETEMSVSDADAREHMAADITQLDAIIDKFLDYARPEPPRLERVSLNAVVDAAVYAVADYEDMRVTVTIPDDMAVLADEVELSRVIANLLENARRYGKTPETGIALVDIAAKARDQWVLIKVRDHGMGVAPETLSKLTRPFFRGDAARTAATGAGLGLAIVEKTIHRMGGVFGLANTGSGGLAAHIKLRRN
>NZ_CP046023.1|WP_122957488.1|2555819_2556296_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MNFRIGEGWDTHALVPGRKLIIGGVDIPHTVGLLGHSDADVLLHAITDALLGAAALGDIGSHFPDTDARFKGADSSVLLKEAGRKLAELGWKIGNIDSTVIAQAPRLAPHIAGMRANIAAALGLDASQVNVKAKTAEKLGPVGQGLGMEARAVVLLHR
>NZ_CP046023.1|WP_122956759.1|2551390_2554891_-|transcription-repair-coupling-factor
MQLPPLATGKRYTLPQPAGSADALLLARLGTREKAAGKLTAIITSDATTAQRLMDEIAFFAPDLRCALFPDWETLPYDTFSPHQDLISERLATLWRIQQRDKDTGADVVIVPATTALYRLAPPSFLAGYTFQFKVKQKLDETRLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSLVPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDEARARFRSRWRELLDGDPTKSRIYKDMGNGVATAGIEYYLPLFFEETATVFDYLGSDATVVLHGDLEPAFQRFWQDTKDRYRLVRDAPDRPALPPESLFLGAEQFYARANDYAQLAIRAAVEDVADNAQFQKLGEMAVVRGAEDPLAKFKGHVRNTAHRVLVLAESDGRRESLLDFLRASSVSPPAFDSLEDFQVSDEKLGIATAALNTGFSWLEEGIDFITETELFAAGATVRRRNKKQEQVSDVEALIKDLSELNVGDPVVHSAHGIGRYRGLINMDLGQGTNADGTPLLQEFLHLEYADGATLYVPVSQLHLISRYTGVSAEEAPLHRLGSGQWEKAKRKAAEQIRDSAAELLNIYARRAAREGHAFRYSPGDYETFANDFGFDETADQRAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFIAVTGGKQVALLAPTTLLAEQHYQTLVDRFAKWPVKIAEMSRFRSGKEITAAIKGLADGTVDIVVGTHKLLSQDVKFERLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRSENNGVIREAVLRELKRGGQVYFLHNEVETIQNRREKLEEILPEARIAVAHGQMPERELERVMKDFIAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKQASQRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGENQSGNMLEVGFQLYNEMLSEAVASLKAGREPDLLSPLSVTTEINLHAPALLPNDYCGDVHLRLSFYKKLATAKNTDQIDALLEEIVDRFGKLPAQAQTLIDVHRLRVIARPYGVVKVDAAPSGINITFKKDPPIDSMAIMHLIQKNRHIRLAGNDKLRIERELPEPKDRAQMVRDILRSLGQPKTPSTPEATPA
>NZ_CP046023.1|WP_122956760.1|2550683_2551394_-|phosphoserine-phosphatase-SerB
MTPTEISPGLVVNVSTPDLKLSDFKLIAFDMDSTLINIECVDEIADAAGRKAEVAAITEAAMRGEITDYKDSLRQRVTLLKGVSVASMDEVYHQRLQLNPGAAELVHACKEAGMKVLLVSGGFTFFTDRVRDELGIDYTRSNVLEVKDGYLTGKMVDQPWGDICDGEEKRKMLLETCGKLGINPLQAIAMGDGANDLPMMGVAGLSVAYHAKPRVREQAMVAINEGGLDRLLELVK
>NZ_CP046023.1|WP_122956761.1|2548745_2550599_-|ABC-transporter-ATP-binding-protein
MLFKKFENLLHAYPEGEPTLPPKGFMAFIWACSRGARGYILMLALLSAAMSAFEALLFAMLGRVIDWLGKAEPARLWIDHGSTLTVLAWIVVASILVVALQTIVKHQTIAINFPMRLRWNFHRLMLGQSMAFYQDEFAGRLTTKVMQTALAVRDTLFVLADVLVAMAVYVATMTVLAAAFDMKLIAPFLIWLVLYIAALFFFVPKLGRIGKQQADARSLMTGRITDAYTNITTVKLFSHTQREAAFARSAMQEFMKTGYSQMRLVSSFEIVNHALSMGLILGMAGTSLWLWSLGQVGAGAVAAATAMALRLQGMSHWIMWEMTSLFESVGTVQDGINTLSRPRVIEDKPDAATLSVPQGEVRFENIGFSYGKAPRVIDGLTLTVKPGEKIGLIGRSGAGKSTLVNLLLRFHDLDAGRILIDGQDISTVTQDSLRSHIGMVTQDTSLLHRSVRDNITYSRPTATEEQMRTAARRAEADGFVEYLSDPAGRKGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEVAIQGSLNTLMQGKTVIAIAHRLSTIAAMDRLIVLDQGRIVEEGDHRSLLANGGLYARLWAHQSGGFLSDNLEEDALAV
>NZ_CP046023.1|WP_122956762.1|2548303_2548630_+|hypothetical-protein
MFRIFALGVMVASALFFLFALERFFAAVANLYKFHFAWPAPIYLIPSTFTLFCGALLGLITVTFWLKKLMFKEAYRSTRMLSASMWVNVVTVGLLVLMVGARLVIFSD
>NZ_CP046023.1|WP_122956763.1|2546615_2548208_+|alkaline-phosphatase
MSTPALIQRRRLLQSLAAAGAGLYLPRSAWSQARIGGNPFTLGVASGSPTHDSVVLWTRLALPNGDALRLQQGPVAVRWELAHDDRFSRMVQTGQAQAVPGLAHSVHVEVQGLEPDRWYFYRFVAGDAVSATGRTRTFPAPDAVVARLRLAYASCQRWEHGYYSALRHMREENLDLVLFLGDYIYEYPHAGQAVRVPTGGWVLTLDDYRQRYALHKSDADLQAMHAACPWMVTWDDHEVQNDYAGAAPGNSGPPVPDFAARRAAAYQAFYEHMPVRASVLTQALAGLASGAEMRIYQRVPYGRLASLYMLDARQYKDAQVCSRDGKAGSSTLNPVHCAAWNDPARSMLGRQQESWLDAEWGKAASRESAWNVVGQQSLLGQRDFHRGPGQTLWNDGWDGYAAARTRFTNALQKHAVANPVILGGDVHENWVGHVKADYADAASAAIGAEFCGTSITSRSAGNAKIPDHLAENPHFIFADSERRGYGVVELTPRKLTTTLRVVDDVTRADSGVQTLAQFAVQAGRPVVEKI
>NZ_CP046023.1|WP_122956764.1|2543805_2546604_+|PAS-domain-S-box-protein
MKMGRWYGAWTAVLLASLACLALPAAAQKPPPARAQAAAPTPGANTGSETAIGNEGSYALSRAFTYLEDPGGELALADLLKPDAQARFQPVAQSGSATNFGLTSAAIWLRVTLRTAPGAPADWMLELAYPPLDRLELYTPDGKGGFSRQVGGDLSPFADRAVVHRNHVMPVRLKPGAASTLYLRVTSGGTVSAPVKLWQPAALWRHDQAEYATISLYFGLLIGLLLYNLLLFFSVRDRAYLIYVAFVACMAMAQAALTGFGAQFLWPGQLWWNSVSPPTGMAATAVFGLLFARSFLSSALKMPRLDRLIQVLVAGWLLTLLAALTMPYVVSSLMVTVLAVFSVITLVVVGVLSLRSGHPGAKYFLAAWALLLVGVVTLALHNTGLLPSNSLTANSLLIGSALEMVVLSFALADRINVTRREKEQAQARTLAEHAMVEALSVSQENFRTQLKEREMILENSIVGIAFLTPDGRFRWANQAMLKVFGAGSNELTSMEPFYLSREEYIRVGGEVAACVARGENYEAEIQVQQFDGTRIWVSLSGKSVSERDLSQGTVWVIINITRRKELEAQLVRTSSEREAILNSALVGIVLSVNRRHEWVNEKFAQMMGCPREQLIGQPSSYIHPDLATWEQFGREARQTLIDTGSYIAERQLRRRDGTLFWAEMAGSCIQPKDPDSGVIWAFLDITERKKSEADTQEALEQQKALNELRTRFVAMTSHEFRTPLSGILSAEELLRHYGSRLPEQEKLEILDSIAAGVKRMTGMLDRVLLLGKADAQMLEFEPHLLDLQKLCEQLLEEARMQQPDSLCELRLEYSAAPGLGLYDEKLLRHIFGNLLSNAVKYSPLGGLVLFKVREDEGMTVMEVADEGIGIPEEELPHLFESFHRASNVGTIQGTGLGLAIVRNAVDIHGGTIAVQSGAGAGTCFTVRLPARR
>NZ_CP046023.1|WP_122956765.1|2543521_2543809_+|HNH-endonuclease
MSRLGHTRDKIYKTVARQLHGVVPCWVCGEHVTQEAATLEHIRPLSEGGNSHAENLAISHEVCNGQRHAAGTVPASAAAPGRVQRRAAANSGAAA
>NZ_CP046023.1|WP_122956766.1|2542697_2543507_+|DUF2726-domain-containing-protein
MNLISWLMALLGIAVGAIGGVLLYARWLRQKDSEKLRIPHKWPLAVRGMVTNDEHEVWKWLRNTFHDHAVMVKLPVLRFTIPVEKDKDKEKNKEKNARLLELLNGVYTTFTICTLDGKVVGCVDLRGKRDVSRASRQLKETLLSDCGIAYTTVKASRPPTASAMRAAFLGEIPEELAQEAEETRGGDSSFHADLESFTKQRVKAAKDAALKELNKETQQEAAQAAATRDIGFTSDGGSGLRGSDNSDRFAVQWEDSFIQPADTRPARLE
>NZ_CP046023.1|WP_007866319.1|2558155_2558893_-|two-component-system-response-regulator-OmpR
MTQAQPNARADKILILDDDARIRDLLRRYLAQEGFEVILAEDSKALNRIMLRDAVDLIVLDLMMPGEDGLSICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRRPTAEVPGAPSSDQEVITFGPFSFDMGLRTLHKNGEELPLTTGEFAMLKTLVRHPRQPLSREKLAQLARGREFEPFDRSLDVQVSRLRKLIEVDAAVPRYIQTVWGIGYVFVPDGTN
>NZ_CP046023.1|WP_122956756.1|2559290_2560007_+|DUF541-domain-containing-protein
MRTSKSIAACVLLAGAAMASGVMAQTMHHEPLQNVAQISTTGSVEVQQDLLSISLNTTRDGTDAGVVQTQLKQALDTALALAKQAAVPGQMDVRTGNFSLYPRYGKDGKINGWQGSTELVLEGKDFPRITSTAGKIQTLTMGNVSFALSREQRAKVEGEAQAQAIERFKAKAAEVARSFGFANYSLREVSINANDQSFPPRPRMMAMAAKSEMADSSVPVEAGKSTVQVSVSGSVQMK
>NZ_CP046023.1|WP_122957487.1|2560045_2560528_-|multidrug/biocide-efflux-PACE-transporter
MVSLQKSLKERFFHALGFEVLAIAICAPLGAWLLGYSLAHMGLLTLMVSLMAMAWNMVFNAIFDRAQRRMGFQRTLGARAVHAVLFEIGLIIAVVPLAAWWLDIGLWEAFVLDIAIVLFFLPYTFGFNWAYDHIRAKVVARHRRLAQKHKEKQKACASAA
>NZ_CP046023.1|WP_122956755.1|2560676_2561579_+|LysR-family-transcriptional-regulator
MRHSPEALTAFAEAATLGSFSAAARKLGKSQSTVSSAIANLEIDLGITLFDRSSRKPALTEHGRVMLGKVQEILAASDRMDRAASQLGGGMESKLSVVWSDTYQSDRFEEMLLAFENRFPDLEFECLIAEHGDLVSLVQTGRAHIGVVAAQNAYPPDVGFATIAEQSEITLFVATAHPLAGMKDITPEVLANFRELRLDTYIETEQGAAQSRRAWSAPSYLMLMEMAVLGFGWAAIPRWMVTRFATGKLAELHARGWPRRVPVDAVWSRQRPLGRAGTWLLQEMLAPAATPAESAAPPGL
>NZ_CP046023.1|WP_122956754.1|2561734_2562352_-|outer-membrane-beta-barrel-protein
MRSLTRTFTATLLAAAAMAAATGVQAQSTNAGASANTNYSFYAPGSRYFGLNVGKSDFSLPNGVGAFPSDNKDTSYNIYGGSYFNNNFGLELGYTDFGKITRGGGQTEAEGINLSLVGRLPLSNSFNLLGKLGTTYGRTRVSASPASGLASGTESDWGVSYGIGAEWAFTPALSAVVQWDEHNMKFVGTGKERISTTSLGLRYRF
>NZ_CP046023.1|WP_122956753.1|2562583_2563429_+|N-formylglutamate-amidohydrolase
MPFITYLPGSTPLVLDSPHSGTAYPEDFRHACALAVLRSAEDTHVEKLYDFAPAMGVHWIEAHFPRSYLDANRNTTEMDVTLLDAPWPGPVETDPRIMSKVRLGKGLIWRTTDEGVPLYDRQLGVAEIQARIEQCWKPYHAAVADAIDSAHRQHGYSIHINCHSMPAVASASATDFPGEKHADFVVGDREGTTASVALSMRVSGHLKARGYSVAYNHPYKGVELVRRYSNPAGQRHSIQLEINRKLYMDETTLALTPGAESLKASLRSLVGMLLKTDPRTL
>NZ_CP046023.1|WP_122956752.1|2563441_2564482_+|histone-deacetylase-family-protein
MLTFFSDSHHAHAPQYEFFRGDRVPCFETPARAEFVKTRLTERGHLLRTPHADSRAVLAKVHTARYLAFLEHAWRDWAALEAGNEQRQPFPSVWPVRTLRSDVEPVNFTARLGLYSMDNGSPLSAGTWQAAKAGADAAASAAALLAGKSERAVFCCSRPPGHHAGPDFMGGYCFLNNAAVAAQALRDGGAARVAVLDVDYHHGNGTQSIFYRRSDVLFVSLHGDPMTEYPFYLGHADETGEGEGAGFNLNLPLAAGCTVPRWFDALETACKRIASYRADALVVSLGLDTFAEDPISKFALQPVDFIRLGERLGKLGLPTVFVLEGGYAAAELGTNAVNVIEGFEGR
>NZ_CP046023.1|WP_122956751.1|2564478_2565576_+|NAD(P)/FAD-dependent-oxidoreductase
MMDQVDCVVIGAGVVGLAVARALALHGREVMVLEAADAIGTGTSSRNSEVIHAGIYYPQGSLKARLCVQGKGLLYDYCAERGIGHQRCGKLIVATSDEQVAQLQGIREKAAANGVLDLVLLTREEARAMEPQLECVAALHSPSTGIVDSHGLMLALQGDLENAGGLVVLNSPLAQAECAQSAIYLVAEDGTELQAKTVVNAAGLHAQQLASRFAGLPAQHVPPSHYAKGNYFTLPGRSPFSRLIYPVPEAAGLGVHLTIDLGGQAKFGPDVQWVDSPDDLVVDPARGDAFYAEVRKYWPGLADGALMPGYAGMRPKIQAPHEAAKDFLIQGPRDHGVAGLVNLFGIESPGLTSSLAIGDYVSRLL
>NZ_CP046023.1|WP_092127949.1|2565589_2566372_-|3-hydroxybutyrate-dehydrogenase
MLKGKTALVTGSTSGIGLGIAKALAAQGANIVINGFGDVDGPKAEVEALGARVAYHGADMSKVSDIEDMMRYAAAQFGQVDILVNNAGIQHVARVENFPVERWDAVIAINLSSAFHATRLALPAMLAADGGKGWGRIINVASVHGLVGSAEKSAYVAAKHGIVGLTKVTALENATTGVTCNAICPGWVLTPLVQKQVDAKAAAGNISNEAATKQLLGEKEPSMQFTTPEELGALAVFFCSPAGNNVRGVAWNMDGGWAAQ
>NZ_CP046023.1|WP_122956750.1|2566490_2567492_+|alpha/beta-hydrolase
MTQPTLNYVNCPDAAGGHRMAYWQWGQADSANVVVCVHGLSRQGRDFDVLARALAEQGAAQPGGIRVVCPDVVGRGESDWLKDPMGYQIPVYAGDMLALLGQLNAQAPIKTLDWVGTSMGGLIGIAVCGQPGLSVAGPPQDAKAPSGGSAARGAASVGAPLLPVPVRRLVLNDVGPAIQWQAIVRIGTYLGLAGHFGSVQQAADAMWAISQSFGPHTPEQWLALSRPMLRRVSDAADAQWRLHYDPAIAVPFKQATEESALKGEATLWQLYDNIKAETLLIRGKQSDLLSPQTAQTMTARGPRARLVEFEGVGHAPTLVAADQVAAVAGFLLG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1213751 : 1222810

Enterobacteria_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_122957233.1\|1213751_1214816_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.3e-87	48.6
WP_122954196.1\|1214824_1215721_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.4e-27	36.4
WP_122954195.1\|1215731_1216619_+	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	1.7e-94	58.9
WP_122954194.1\|1216615_1217164_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.5e-53	55.7
WP_122954193.1\|1217160_1219113_-	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.7e-17	27.3
WP_122954192.1\|1219150_1219711_-	sugar transferase	NA	NA	NA	NA
WP_122954191.1\|1220010_1220334_+	MarR family EPS-associated transcriptional regulator	NA	NA	NA	NA
WP_122954190.1\|1220330_1221794_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	8.3e-46	28.2
WP_122954189.1\|1221790_1222810_+	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	6.1e-88	51.9

DBSCAN-SWA_2

2386229 : 2395177

Tupanvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_122956872.1\|2386229_2387447_+	IscS subfamily cysteine desulfurase	A0A2K9L2Y3	Tupanvirus	2.0e-08	23.8
WP_122956871.1\|2387481_2387868_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.5e-50	76.8
WP_074575253.1\|2387912_2388236_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.8e-28	58.9
WP_122956870.1\|2388312_2388831_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_122956869.1\|2388874_2390737_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.4e-98	39.0
WP_122956868.1\|2390751_2391090_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_122956866.1\|2392549_2393257_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	7.4e-40	38.5
WP_122956865.1\|2393494_2395177_-	PhoH family protein	A0A2I7SAD7	Vibrio_phage	1.6e-72	35.7

DBSCAN-SWA_3

3528461 : 3536011

Erwinia_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_122955986.1\|3528461_3528908_-	dUTP diphosphatase	G0YQD9	Erwinia_phage	2.6e-43	63.3
WP_122955985.1\|3528911_3529358_-	hypothetical protein	NA	NA	NA	NA
WP_122955984.1\|3529354_3530671_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.4e-36	31.9
WP_122955983.1\|3530836_3532528_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	8.8e-148	49.7
WP_122955982.1\|3532530_3533388_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.0e-47	40.3
WP_122955981.1\|3533395_3534280_+	FkbM family methyltransferase	I3UL74	Ostreococcus_lucimarinus_virus	8.1e-12	30.3
WP_122955980.1\|3534388_3534679_+	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_122955979.1\|3534727_3536011_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.4e-150	63.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046023

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection