CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP026528	Sinorhizobium meliloti strain AK21 plasmid pSmeAK21a, complete sequence	0 crisprs	RT	0	1
NZ_CP026525	Sinorhizobium meliloti strain AK21 chromosome, complete genome	1 crisprs	WYL,PD-DExK,cas3,csa3	1	9
NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	1 crisprs	DEDDh,WYL,RT	1	5
NZ_CP026529	Sinorhizobium meliloti strain AK21 plasmid pSmeAK21b, complete sequence	0 crisprs	RT,WYL	0	1
NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	3 crisprs	csa3,RT	3	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36232 : 92649

Stx2-converting_phage(41.67%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012477324.1\|36232_37741_+\|transposase	IS21-like element ISRm9 family transposase	NA	NA	NA	NA
WP_088194105.1\|37737_38550_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.5e-28	35.7
WP_158528788.1\|40140_41343_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_158528789.1\|41339_43319_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
WP_158528790.1\|43327_43723_-	RidA family protein	NA	NA	NA	NA
WP_158528791.1\|43700_44129_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_158528792.1\|44142_45330_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_158528793.1\|45344_46520_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_158528794.1\|46522_47365_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_158528795.1\|47376_48147_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_158528796.1\|48143_50465_-	bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase	NA	NA	NA	NA
WP_158528797.1\|50664_51189_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_158528798.1\|51991_53611_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.8e-17	25.2
WP_158528799.1\|54408_55527_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_158528800.1\|55539_57036_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_158528801.1\|57225_58284_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158528802.1\|58953_60139_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	5.9e-66	49.1
WP_158528803.1\|60130_60349_-	hypothetical protein	NA	NA	NA	NA
WP_158528804.1\|60627_61614_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_127523045.1\|61618_62638_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_127546381.1\|62698_63079_-	RidA family protein	NA	NA	NA	NA
WP_158528805.1\|63257_64178_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_127523041.1\|64332_65538_+	aminotransferase class V-fold PLP-dependent enzyme	Q2XUY6	environmental_halophage	1.2e-29	25.0
WP_014528044.1\|65610_65916_-	hypothetical protein	NA	NA	NA	NA
WP_057220201.1\|66451_66631_+	hypothetical protein	NA	NA	NA	NA
WP_158528806.1\|66617_68690_+	serine recombinase	A0A1B2LRQ3	Wolbachia_phage	1.8e-06	25.1
WP_014528045.1\|70134_70482_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.0e-27	54.9
WP_014528046.1\|70478_70865_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_158528807.1\|71014_71311_+	hypothetical protein	NA	NA	NA	NA
WP_127522706.1\|71801_72422_-	LysE family transporter	NA	NA	NA	NA
WP_127522704.1\|72460_73840_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_127522701.1\|74030_75140_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
WP_127522699.1\|75170_76505_+	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	NA	NA	NA
WP_127522708.1\|76533_77601_+	fatty acid desaturase family protein	NA	NA	NA	NA
WP_127522697.1\|77606_78395_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_064744411.1\|79032_79338_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012477217.1\|79334_79682_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.7e-26	57.1
WP_158528811.1\|79796_81305_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.7e-82	38.2
WP_158528808.1\|82523_84551_-	serine recombinase	A0A1B2LRQ3	Wolbachia_phage	1.8e-06	25.1
WP_057220201.1\|84537_84717_-	hypothetical protein	NA	NA	NA	NA
WP_014531779.1\|85256_85553_+	hypothetical protein	NA	NA	NA	NA
WP_102763264.1\|87579_88029_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	8.9e-07	39.4
WP_127523103.1\|88009_88177_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_158528809.1\|88189_90184_-	serine recombinase	A0A2H4PDG5	Mycobacterium_phage	9.4e-16	37.2
WP_017268732.1\|90183_91842_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.5e-104	43.9
WP_127546179.1\|92265_92649_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP026525

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP026525_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026525_1

1139621-1139734

Orphan

Consensus_repeat	Method
CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP026525_1

>merge|NZ_CP026525|1|1139621-1139734|CRISPRCasFinder
CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAAGGGGGCGAAGGGCCGGTCTATCCGAACATGTGAATGTCCGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAA

>NZ_CP026525|1|1|1139621-1139734|CRISPRCasFinder
CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAA	GGGGGCGAAGGGCCGGTCTATCCGAACATGTGAATGTC
CGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026525.1\|WP_010968994.1\|1126687_1129006_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP026525.1\|WP_015007348.1\|1146451_1147471_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP026525.1\|WP_015007346.1\|1141398_1142286_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NZ_CP026525.1\|WP_158528454.1\|1144971_1146459_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|224720
NZ_CP026525.1\|WP_010969000.1\|1140179_1141178_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NZ_CP026525.1\|WP_003527321.1\|1148551_1150054_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NZ_CP026525.1\|WP_158528453.1\|1129368_1132023_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NZ_CP026525.1\|WP_003527344.1\|1135143_1135320_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026525.1\|WP_010968993.1\|1123716_1126677_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	unknown	unknown	gnl\|CDD\|237612
NZ_CP026525.1\|WP_003527322.1\|1147566_1148523_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP026525.1\|WP_010968997.1\|1135458_1136319_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680
NZ_CP026525.1\|WP_003527345.1\|1134950_1135106_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026525.1\|WP_127522712.1\|1136391_1137681_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NZ_CP026525.1\|WP_010968996.1\|1132448_1133387_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP026525.1\|WP_003527320.1\|1150133_1150454_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|224656
NZ_CP026525.1\|WP_003527346.1\|1133396_1134686_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_CP026525.1\|WP_010968999.1\|1137950_1139615_+\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
NZ_CP026525.1\|WP_010969003.1\|1144029_1144956_+\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP026525.1\|WP_010969001.1\|1142375_1143389_-\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|274313
NZ_CP026525.1\|WP_015007347.1\|1143489_1143891_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647

Protein	Function_ID	Function_description	E-value
NZ_CP026525.1\|WP_010968994.1\|1126687_1129006_-\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.01082e-54
NZ_CP026525.1\|WP_015007348.1\|1146451_1147471_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.38072e-70
NZ_CP026525.1\|WP_015007346.1\|1141398_1142286_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	4.36406e-138
NZ_CP026525.1\|WP_158528454.1\|1144971_1146459_-\|glycosyltransferase	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	6.30802e-52
NZ_CP026525.1\|WP_010969000.1\|1140179_1141178_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.87733e-106
NZ_CP026525.1\|WP_003527321.1\|1148551_1150054_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NZ_CP026525.1\|WP_158528453.1\|1129368_1132023_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NZ_CP026525.1\|WP_010968993.1\|1123716_1126677_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	gnl\|CDD\|237612	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase.	0
NZ_CP026525.1\|WP_003527322.1\|1147566_1148523_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	8.0146e-08
NZ_CP026525.1\|WP_010968997.1\|1135458_1136319_-\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	2.76855e-63
NZ_CP026525.1\|WP_127522712.1\|1136391_1137681_-\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NZ_CP026525.1\|WP_010968996.1\|1132448_1133387_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.33806e-16
NZ_CP026525.1\|WP_003527320.1\|1150133_1150454_-\|YnfA-family-protein	gnl\|CDD\|224656	COG1742, COG1742, Uncharacterized conserved protein [Function unknown].	3.23612e-41
NZ_CP026525.1\|WP_003527346.1\|1133396_1134686_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.41852e-81
NZ_CP026525.1\|WP_010968999.1\|1137950_1139615_+\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	1.40481e-104
NZ_CP026525.1\|WP_010969003.1\|1144029_1144956_+\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	4.46621e-74
NZ_CP026525.1\|WP_010969001.1\|1142375_1143389_-\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|274313	TIGR02817, Putative_oxidoreductase_transmembrane_protein, zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. [Energy metabolism, Fermentation].	0
NZ_CP026525.1\|WP_015007347.1\|1143489_1143891_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	8.18039e-42

>NZ_CP026525.1|WP_010968999.1|1137950_1139615_+|electron-transfer-flavoprotein-ubiquinone-oxidoreductase
MTEQQELPERESMEFDVVIVGAGPAGLAAAIRLKQVSPELSVVVLEKGAEVGAHILSGAVVDPIGIDRLLPGWRDEPDHPFKTEVTDDQFLFLGPAGSVRLPNFLMPPLMNNHGNYVVSLGNVCRWLATQAEALGVEIYPGFAATEVLYNDEGAVIGVATGDMGIERNGEPGPNFARGMELLGKYTLIGEGVRGSLAKQLIAKYKLDAGCDVPKFGIGLKELWEVKPENHKPGLVQHSFGWPLGMKTGGGSFLYHLEDNLVAVGFVVHLNYKNPYLYPFEEFQRFKTHPAIRGTFEGGKRLSYGARAITEGGYQSVPKLSFPGGALIGCSAGFVNVPRIKGSHNAVLSGILAAEKLAAAIADGRANDEPIEIERGWRESAIGQDLKRVRNVKPLWSKFGTAVGVALGGLDMWTNQLFGFSFFGTLKHGKTDAQSLEPAAKHERIDYPKPDGVLTFDRLSSVFLSNTNHEEDQPVHLQVKDWDLQKRSEYEVYAGPSSRYCPAGVYEWVEKDGQQTFVINAQNCVHCKTCDIKDPNQNINWVPPQGGEGPVYPNM
>NZ_CP026525.1|WP_127522712.1|1136391_1137681_-|Hsp70-family-protein
MASALGLDFGTTNSVLAQTEGASTRSIVVESPTGRSDTTRTALSFLKDAGPSPLKVEAGQAAIREFIDNPGECRFLQSIKTFAASALFQGTLIFGKRYEFEDLMQRFLTRLRDYAGNNWEATFRRVVIGRPVHFAGANPDEKLALERYNRALTRMGFPEVHYVYEPVAAAFYFARNLDRDATVLVADFGGGTTDYSIIRFESQAGRLTATPIGHSGVGIAGDHFDFRIIDNIVSPLIGKGSLFKSFDKLLEVPSSYYANFGRWNQLSIFKTLRDFTELKKLVRASLEPEKLESFMELIEHDEGYPLYQAVSATKMRLSQAEETEFAFAPLGERARRTVRRDEFEGWIAPDLARIEEALDEVLSTTATTPDGIDKVFLTGGTSFVPAVRRLFENRFGKERIESGGELLSIAHGLALIGERDDIAAWTAAA
>NZ_CP026525.1|WP_010968997.1|1135458_1136319_-|uracil-DNA-glycosylase
MISANDLSRSELAALLAFHAEAGVEWLLEEEPVDRLAEFEAMKSRRAQSRAVPQTGATAAEPQQSAPPAAARERRPAPPAPPPVVAIPDEQAIKEAQFVADAARSLGELRTAMEAFAGCNLRNSARNLVFAEGSAASGVMIIGPMPYADDDRDGRPFAGRHGEMLERMLSGIGLSREDVLLANAVPWRPPGNRVPSAREADICRPFIERQIALAEPKQLLLLGNFTARFFFGGETIHQLRGEWRELTFGGTSIPTLATLHPQDLVAAPINKRFAWLDLLAFKSRLG
>NZ_CP026525.1|WP_003527344.1|1135143_1135320_-|hypothetical-protein
MTARYRPIHSSFETLRYAGASSRTPFNSFGSAANEQLTAIGLARTTRPAQIFAEFIQR
>NZ_CP026525.1|WP_003527345.1|1134950_1135106_-|hypothetical-protein
MSKPLDSIRALVDTISDIRTAVRASREYSRLSIASDGRRVHDGAASRLLPS
>NZ_CP026525.1|WP_003527346.1|1133396_1134686_-|MFS-transporter
MLANFASVFSLMLSTFLMMVAFGLQSYVIPVRSVAESWSTLTISIFATGYTLGFTLSCIVTPKFVLRVGHVRVFTALITLLSIAILMCGLVVDWRAWIGFRAVSGFAIAGSYLVIESWLNERVTNENRGLLFSLYLITTMVGTIGGQYLVPLGDPSNTSLFILCGVLFSLALLPTALSSSPMPAPPARANFDIPALYRRSPVAVVGGFLAGALSGAWLNLGGVFTQKIGLSTGEGATLLASLLAGSAISQVPIGRASDRMDRRIVMVACGIAGVVSCLAMSVSIASSPPVLYALAACIGTVLFPIYALNVAHANDLARPDEYVEISSGLMITYGLGTISGPLMVGPVMDRFGPVALFIALAVYFALYSGYAAWRILQREQHDGLVAKTDFQATTVLPTPGPDVTGPLAQQDAGELIEDDTVPAWEQRAE
>NZ_CP026525.1|WP_010968996.1|1132448_1133387_+|DMT-family-transporter
MDADDASPMKGIVLKVLSVVVFVCMSTCIKAAGDDIPTGQITFYRSAFAMVPILGFLACRGALRDAFRTTDITGHLVRGFVGILAMSCGFYGLVHLPLPEAIAIGYAMPLLAVAFAAIFLGEIVRLYRWSAVFVGLAGVFIITWPRLTLFNEGGFGSAEAMGAVAVLLSAALGATAMVLVRKLVQKERTHTIVLYFSLSAAVFSLATLPFGWSELSWQAFVLLTIAGFCGGVGQILLTESYRHADMSTIAPFEYTSIVLGIVIGYFLFGDVPTATMLAGTAIVVGAGIFIIYREHRLGLERKGARKHVTPQG
>NZ_CP026525.1|WP_158528453.1|1129368_1132023_-|aminopeptidase-N
MRTNTGQIVHLENYRPTDFVLERVDLTFELDPRETKVEARMIFHRREGVSPSAPLVLDGDELTMTGLLLDQVAVPGTLYEATDDTLTIRGLPEAAPFEITVTTALSPETNTKLMGLYRTSDVYCTQCEAEGFRRITYFPDRPDVLAVYTVNIIADKASAPLLLSNGNYLGGADMGDGRHFASWFDPHPKPSYLFALVAGDLGVVEDAFTTASGRDVALKIYVEHGKEPRAAYAMDALKRSMKWDEEVFGREYDLDIFMIVAVSDFNMGAMENKGLNIFNDKYVLADPETATDADYANIEAIIAHEYFHNWTGNRITCRDWFQLCLKEGLTVYRDHEFSADMRSRAVKRIAEVRHLKSEQFPEDAGPLAHPVRPTQYREINNFYTTTVYEKGSEVTRMIATILGRDLFKKGMDLYFERHDGQAVTIEDFIACFEAASGRDLKQFSLWYHQAGTPLVTASGTYDAAGQTYTLSLEQTVPPTPGQSSKAPMHIPLRFGLLLPDGSEARPSAVSGAEITGDVLHLTERKQTVTFSGIPSEPVPSFNRGFSAPVNLHLTQSAEHRALIARHETDLFARWQALNAMALDNLVKAAAEARTGQPIDCDDALVDALLAAAGDDRLEPAFRSQVMSLPSETDIGREIGSNNDPDAIYAGRQAILAAIATAGKDTFARLVNEMSLSGPFRPDADSAGRRALRNSGLSYLVYADGSPDKAADAFSSANNMTDLSQALTLLAHRFPDARETADALAVFKKRFADNALVIDKWFAIQATIPGASTLDRVRALMSDPLFNASNPNRVRSLVGTFAFANATGFNRIDGEGYRFLARQILDIDTRNPQLAARILTSMRSWRSLEKIRAGHARSALEEIARASNLSADVSDIVDRMLKDEH
>NZ_CP026525.1|WP_010968994.1|1126687_1129006_-|PAS-domain-containing-protein
MADARRGSAAEGRLRLKFPGFSGLEREFIEQAKIFAEPASQKLAMAEPMLKRSIPVLIIAFLLIVAISRMSGIMDEHARMEASSRRTVSLAAAAAAGVFQTGGSELFAEGRRWEVERRLTEFLPAEILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRASIDGTEHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYIQAKRTRDADAVFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGDASVLSFGDAARLMHVEDRGIYRVARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGTERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGLTMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIPDRG
>NZ_CP026525.1|WP_010968993.1|1123716_1126677_+|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase
MAEAIERSLSDIDVVAIRPASQADAKAALSVLKDAAKGSDHIAKLIASDAPLKDFLVAAFALSPFLRDTARSHPAILEALLSETLPAFLKRRIEAARVAWRGDAAGAALPDAEIMTRLRRAKREVAFAVALADLSRLFGGRETTGWLSDFAEAAVSAAIDHLLLGAHESGKFVLKDSSAPSTASGVVVLGMGKLGAGELNYSSDIDLVVFYDPQSSIITNRDDAPETFARLLRRLIRILQERTGDGYVFRTDLRLRPDPGSTPLAIPVEAAMLYYESRGQNWERAAFIKARPIAGDLEAGERFLKELTPFVFRKYLDYAAIADIHSIKRQIHAHKGHGEIAVKGHNIKLGRGGIREIEFFVQTQQLIAGGRTPALRLRQTETMLRMLAESGWIDGATAEELIEAYWFLRDVEHRIQMVHDEQTHLLPETEPELRRIAYMLGFEDTASFSNALSRVLRTVERRYAQLFEQEAKLSTETGNLVFTGQQDDPDTLETLKKLGFQRPSDIANIIRTWHYGRYRATQSVEARERLTELTPELLRVFGESRRADEAFLRFDHFLSGLPAGIQLFSLLGNNPGLLSLIVNIMSSAPRLADIIAAKPHVFDGMLEPGLLAELPTRDYLAPRIATFVGGGRHYEEVLDRLRIIAAEQRFLIGIRLLTGAITGLQAGRALTDLADLIIAAALDAVLEEVRSAHGRFPGGRVAIVGMGKLGSHELTAGSDIDLILLYDYDDEVLESDGAKPLDPVRYFTRVTQRLIAALSAPTAEGILYDVDMRLRPSGNKGPVATRITAFAKYQRTEAWTWEHLALTRARCICGDESLVGEAEAIFAEILTEKRDIAKIRKDVEEMRGLIDKEKPPKDIWDFKLIPGGLVDIEFIAQYLALVAPARGVTSPPAGTHTLEALKALGAGMMNANDLDTAAEALVLFTELSQLVRLCIDGDFDPKEAPAGLVDLVCRAGDYPDLTHLEADIRRLSKAVRRIFQGVVAAA
>NZ_CP026525.1|WP_010969000.1|1140179_1141178_+|ABC-transporter-substrate-binding-protein
MKKLLATTCLAAGLLGLGSAASAAECGDVTIANMNWQSAEVLASVDKFILTEGYGCSAELVVGDTVPTITSMIEKGEPDIAPEGWVDLLPDVVNRGLQEGKLVGAAVALSDGAVQGWWVPKYIVDANPDIKTIDDVLKHKELFPDPEDPSKGAIFNGPQGWGGTVVTTQLYKAYGAEAAGFTLVDTGSAAGLDGSIAKAYERKQGWAGYYWAPTALLGKYEMVKLEHGVPNDMAEWKRCNTVADCPDPKKNDWPKDKVQTLVTKEFADRAGPAMEYLNTRAWTNDTVNKLMAWMTDNQASGEEGAKHFLEENPDLWTKWVSPEVAEKIKAAL
>NZ_CP026525.1|WP_015007346.1|1141398_1142286_+|proline/glycine-betaine-ABC-transporter-permease
MEWLTKFPHMDDDRLRQLKKIIDEGFRSFTRAYGDAIESFFDPLQFFLIHAERFMTRTPWPIILILIAVIAWFASRNWKIVAGAIGTLLLIGYLDMWDDTMKTISMIFVCTVLSIAIGIPMGITMSRSDRFQNIVNPVLDVMQTMPSFVYLIPVVMLLGIGKVPGLIAVVIYAIPPMIRLTNLGIRLVDKDVLEAADAFGSSNWQKLKNVQMPLALPTIMAGINQTIMMALAMVVIASMIGVQGLGQPVLKAIANQYFTLGIFNGLAIVGIAIIFDRVSQAYGRRLQRHREIIHG
>NZ_CP026525.1|WP_010969001.1|1142375_1143389_-|zinc-binding-alcohol-dehydrogenase-family-protein
MRAVAYKTPQPIANETALIDVDLPVPTPGERDLLVEVRAVSVNPVDTKVRAGVQPEPEQLKVLGWDAAGVVKAVGPKVTLFKPGDEVFYAGAIDRPGTNAELHLVDERIVGRKPQSLDFAAASALPLTAITAWETIFDRLRVNDPVPGAANAVLIIGGAGGVGSIAIQLLRALTNVTVIATASRAETREWALKLGAHHVLDHSRPLAAEIEQLALGAPAFVFSTTNTDKHVDEIVKLIAPQGRFALIDDLAVLDVTPFKRKSVSIHWEMMFARPLFGTPDMIEQHNLLNRVAELVDGGKIRTTLTETLGPIDAATLRKAHQMIETGRTRGKLVLAGF
>NZ_CP026525.1|WP_015007347.1|1143489_1143891_+|helix-turn-helix-transcriptional-regulator
MSRPRAKLTNTFPGCPVESALSFIDGKWKGVILYHLMSEGVLRFNELRRRLPSVTPRMLTRQLRELEEAALLSRTVFPVVPPRVDYALTARGESLKPVIMALKAWGDENVLCDGDSMTLKPLESRSRPELKRA
>NZ_CP026525.1|WP_010969003.1|1144029_1144956_+|diacylglycerol-kinase-family-lipid-kinase
MKVKAIFNRDGGTFRTTDMDAYSRKVEEDFRAAGHEIEIAVVGADEMRDTLETACGRGDLDAIVAGGGDGTISAAAGVAWKTGMPLGIVPAGTMNLVARSLKLPLDIWKVPEVLANGRIIDADIGSADGRAFVHQFSMGLHARMVRYRQSYRFASRLGKISASTRAAIGVIFNPPDFEIEFDADGHRERRHVSAISVSNNHFGHDTLMYAEDLTSGHLGFYTAPPLSPAGVAKLSFDILRGKFRSSTLITEMSALTVDLHFPKMDRKINCVIDGELVPIRSGRVALRVHPGELKLLVGSQESNAGKTV
>NZ_CP026525.1|WP_158528454.1|1144971_1146459_-|glycosyltransferase
MLEAVNRRPGAAVLAVAGYFLLCIILRVSVSSSLEIDEAEQAFLSQFLALGYGPQPPFYNWLQYGLAELIGPSLATMTILKNGLLFLCCLFYGLAARLVLADRRLPPIAMLGVLTLPPVFLLAQRDLSHTIAALFAVSLFLYGFLRTLKRPSLFSYLLTGVAVGIGLMAKYNFVLVPVAAIVAVLPEGELRARILDWRILPAIAIATLIVLPHAYWMLQNFGFASGGTLNEMREREAEGLLLQAFYGVYSLGSAIIGGSLGPLLVFGLVFRGKLRAIWQAESQWSRIIGRMLALCLIAVLLVVLGVAATHVREKWLVLFLVLIPLYLCLKIEAANIDLTDSLRRFFLLVCVIALGALVMVSARAVVRPWFGDYSRLNIPYAAFAEAVAQAEGGQPALILANDKQIAGNLRTQFSRAQVTMPRPSNALPVDMSRRPLLLVWHDDAQPEAPVPDLLRNALSELGVPGAAAAPRHLALPYLYGTGSDRYGFSYIWVAE
>NZ_CP026525.1|WP_015007348.1|1146451_1147471_-|glycosyltransferase-family-2-protein
MNRIEEPVKPMTEVLEGVELSIVVPVFNEEESVGPLVTRIRVAMAGFLKSWELILVDDGSTDRTLPNARKELSNPDLQLKIIELQKNFGQTAAMQAGIDAASGRLIATLDGDLQNDPADIPNMVAAIEERGLDLLVGWRQNRRDALILRKIPSWCANVLIGKITGVRLHDYGCSLKIYRGSIIKQVKLMGEMHRFIPAWVAGVVPSSRIGEMPVTHHARHYGTSKYGISRTFRVILDLLAVLFFMRYKARPGHFFGSIGLAAGGLSVLILLYLAIDKFILGNDIGTRPMLIVGVMLFLSSIQLITTGILSEMMARAYFRDDEVTSYIVRQTFEREQPHA
>NZ_CP026525.1|WP_003527322.1|1147566_1148523_+|flippase-like-domain-containing-protein
MNTNWERSRRSWLARNRLALISAAAIAAYAIFVEWVWGWPVLLRQWAEIGVGPVLSALALLVATYFIRCYRIHDYFPGETRGRFLSLFRVTQVHNLLNIMLPFRAGETSFPLLMRSEFGVPLVRGTAALFVMRLLDLHALLTVAAVGLVAGRGQGAIGWVLWLIAFLSPLAFFLMKEKALTVMRRVAPAKAGPLLDEAEAGLPIGIPAFLRAWAMTMLNWAVKVVVLAWVLAIMGVAPLAASFGGALGGELSSVLPVHAPAGVGTYAAAIVAGAVSFGASADQATLETLGRASVNAHLMVIVSAVAGTMLSLLLRPKA
>NZ_CP026525.1|WP_003527321.1|1148551_1150054_-|AMP-nucleosidase
MNKRISSNSVLSVATPEPFEPQLFDDPTEAVDCLEALYERNTRFLCEGFEGLGKSGRPLTRFRACYPQVSIETSSFGHVDSRLSFGYVSAPGVYTTTITRPKLFRHYLKEQLGHLMRNHGVGVTVSESSTPIPLHFAFGEGAHVEASAAESIDIPLRDLFDAPDLTTTDDEIANGSYEPGPGEPSPLAPFTAQRIDYSLARLSHYTATSARHFQNFVLFTNYQFYVDEFCAWARQQMAEGGNGYTAFIEPGNITTPAGADRPDADYSLARLPQMPAYHLKKKGHGGITLVNIGVGPSNAKTITDHIAVLRPHVWLMLGHCAGLRNSQRLGDYVLAHAYMREDHVLDDDLPVWIPLPALAEVQVALQDAVAEVTGYKGYDLKQIMRTGTVATIDNRNWELRDQRGPVKRLSQARAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASAFYRTQVSQHLKIGILALQKLAAMPPEKLHSRKLRSFYETSFQ
>NZ_CP026525.1|WP_003527320.1|1150133_1150454_-|YnfA-family-protein
MPAYAIYFLAALAEITGCFAFWSWLRLGKSALWLIPGMASLALFAWLLTMVDAAAAGRTYAAYGGVYIVASLSWLWLAEGVRPDHWDMTGAAVALAGSAIILAGPR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP026525_1	1.1\|1139659\|38\|NZ_CP026525\|CRISPRCasFinder	1139659-1139696	38	NZ_CP015741	Shinella sp. HZN7 plasmid pShin-05, complete sequence	7231-7268	4	0.895
NZ_CP026525_1	1.1\|1139659\|38\|NZ_CP026525\|CRISPRCasFinder	1139659-1139696	38	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	250765-250802	5	0.868
NZ_CP026525_1	1.1\|1139659\|38\|NZ_CP026525\|CRISPRCasFinder	1139659-1139696	38	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1691497-1691534	6	0.842
NZ_CP026525_1	1.1\|1139659\|38\|NZ_CP026525\|CRISPRCasFinder	1139659-1139696	38	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	126743-126780	6	0.842
NZ_CP026525_1	1.1\|1139659\|38\|NZ_CP026525\|CRISPRCasFinder	1139659-1139696	38	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	188971-189008	6	0.842
NZ_CP026525_1	1.1\|1139659\|38\|NZ_CP026525\|CRISPRCasFinder	1139659-1139696	38	NZ_CP024308	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence	99915-99952	8	0.789
NZ_CP026525_1	1.1\|1139659\|38\|NZ_CP026525\|CRISPRCasFinder	1139659-1139696	38	NZ_CP013632	Rhizobium sp. N324 plasmid pRspN324b, complete sequence	155054-155091	9	0.763

1. spacer 1.1|1139659|38|NZ_CP026525|CRISPRCasFinder matches to NZ_CP015741 (Shinella sp. HZN7 plasmid pShin-05, complete sequence) position: , mismatch: 4, identity: 0.895

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaaggcccggtctatccgaacatgtgaatttt	Protospacer
** ******** *********************** *.

2. spacer 1.1|1139659|38|NZ_CP026525|CRISPRCasFinder matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 5, identity: 0.868

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaagggccggtctatccgaatatgtgatcatc	Protospacer
** ***********************.****** ..**

3. spacer 1.1|1139659|38|NZ_CP026525|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 6, identity: 0.842

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaaggcccggtctatccgaacatgtgacgtcc	Protospacer
** ******** *********************   .*

4. spacer 1.1|1139659|38|NZ_CP026525|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 6, identity: 0.842

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaaggcccggtctatccgaacatgtgagttcg	Protospacer
** ******** *********************.* .

5. spacer 1.1|1139659|38|NZ_CP026525|CRISPRCasFinder matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 6, identity: 0.842

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaagggccggtctatccgaatatgtaaccgac	Protospacer
** ***********************.****.* .* *

6. spacer 1.1|1139659|38|NZ_CP026525|CRISPRCasFinder matches to NZ_CP024308 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence) position: , mismatch: 8, identity: 0.789

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
gggggcgaaggcccggtctatccgaacatgtagcccga	Protospacer
*********** *******************.. .

7. spacer 1.1|1139659|38|NZ_CP026525|CRISPRCasFinder matches to NZ_CP013632 (Rhizobium sp. N324 plasmid pRspN324b, complete sequence) position: , mismatch: 9, identity: 0.763

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaggggccggtctatccgaacatgtagggcag	Protospacer
** *****.**********************...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1463975 : 1474694

EBPR_podovirus(33.33%)

portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_127644082.1\|1463975_1465355_+	DNA packaging protein	C8CLI4	Xylella_phage	8.1e-160	61.5
WP_127644080.1\|1465354_1465621_+	hypothetical protein	NA	NA	NA	NA
WP_158528460.1\|1465620_1467678_+\|portal	phage portal protein	F8TUR6	EBPR_podovirus	3.7e-201	60.1
WP_003533366.1\|1467677_1467917_+	hypothetical protein	NA	NA	NA	NA
WP_127644076.1\|1467950_1468916_+	hypothetical protein	A0A088F6W8	Sulfitobacter_phage	1.2e-35	35.0
WP_028005805.1\|1468940_1469936_+	DUF5309 domain-containing protein	A0A088FAT7	Sulfitobacter_phage	1.3e-130	71.9
WP_127635570.1\|1469947_1470382_+	hypothetical protein	A0A218MMG4	uncultured_virus	8.3e-18	45.3
WP_033053790.1\|1470453_1470786_+	hypothetical protein	NA	NA	NA	NA
WP_127644074.1\|1470782_1471106_+	hypothetical protein	F8TUS1	EBPR_podovirus	9.5e-27	50.9
WP_128204041.1\|1471363_1471705_+	hypothetical protein	NA	NA	NA	NA
WP_157718911.1\|1471715_1471889_+	hypothetical protein	NA	NA	NA	NA
WP_127644070.1\|1471885_1472485_+	hypothetical protein	A0A2K9VHC9	Pseudomonas_phage	3.1e-07	24.4
WP_127644069.1\|1472481_1473084_+	hypothetical protein	A0A088FAT4	Sulfitobacter_phage	1.8e-23	37.1
WP_028005810.1\|1473080_1474694_+	hypothetical protein	F8TUS4	EBPR_podovirus	2.5e-83	40.6

DBSCAN-SWA_2

1699953 : 1711043

uncultured_Mediterranean_phage(80.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_127521494.1\|1699953_1700988_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.0e-22	42.6
WP_086017954.1\|1701081_1701900_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.7e-32	34.7
WP_003534560.1\|1701892_1702612_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	5.7e-40	44.0
WP_003534562.1\|1702676_1703786_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-29	37.6
WP_003534564.1\|1703880_1704087_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.2e-08	65.9
WP_013844334.1\|1704160_1704808_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_003534569.1\|1704804_1705647_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.7e-43	41.2
WP_003534571.1\|1705783_1707067_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.0e-101	47.0
WP_003534572.1\|1707094_1707865_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.2e-22	30.9
WP_003534574.1\|1707861_1708515_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.5e-15	35.2
WP_003534576.1\|1708686_1709340_+	hypothetical protein	NA	NA	NA	NA
WP_158528462.1\|1709504_1711043_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	1.0e-14	32.8

DBSCAN-SWA_3

1723087 : 1759630

Mesorhizobium_phage(77.78%)

capsid,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158528465.1\|1723087_1725616_+	hypothetical protein	A0A076YJ28	Mesorhizobium_phage	3.9e-285	58.6
WP_153414274.1\|1725711_1725924_+	hypothetical protein	NA	NA	NA	NA
WP_127632965.1\|1725987_1726260_+	hypothetical protein	A0A076YM53	Mesorhizobium_phage	5.7e-25	65.5
WP_153414272.1\|1726252_1726672_+	hypothetical protein	NA	NA	NA	NA
WP_158528466.1\|1726825_1727512_+	hypothetical protein	NA	NA	NA	NA
WP_153493579.1\|1727515_1727983_+	endodeoxyribonuclease	A0A076YNU3	Mesorhizobium_phage	3.4e-41	58.6
WP_029727639.1\|1727979_1728201_+	hypothetical protein	NA	NA	NA	NA
WP_158528467.1\|1728283_1728547_+	hypothetical protein	NA	NA	NA	NA
WP_158528468.1\|1728546_1729050_+	hypothetical protein	J7SCC9	Pseudomonas_phage	2.4e-08	28.3
WP_158528469.1\|1729058_1729205_+	hypothetical protein	NA	NA	NA	NA
WP_158528470.1\|1729248_1729686_+	hypothetical protein	A0A076YJ38	Mesorhizobium_phage	6.6e-23	41.7
WP_158528471.1\|1729682_1731383_+	toprim domain-containing protein	A0A2D2W4Z3	Ralstonia_phage	4.8e-170	55.8
WP_153414258.1\|1731382_1731535_+	hypothetical protein	L7TKB4	Rhizobium_phage	2.2e-10	73.3
WP_158528627.1\|1731651_1733613_+	DNA polymerase	A0A076YNV1	Mesorhizobium_phage	7.8e-257	68.3
WP_158528472.1\|1733482_1733983_+	hypothetical protein	A0A2R8FFZ6	Yersinia_phage	6.4e-14	45.8
WP_158528473.1\|1733979_1734180_+	hypothetical protein	NA	NA	NA	NA
WP_158528474.1\|1734179_1734323_+	hypothetical protein	NA	NA	NA	NA
WP_158528475.1\|1734332_1735064_+	hypothetical protein	A0A076YQJ3	Mesorhizobium_phage	6.1e-98	71.6
WP_158528476.1\|1735285_1735483_-	hypothetical protein	NA	NA	NA	NA
WP_029727629.1\|1735567_1735777_+	hypothetical protein	NA	NA	NA	NA
WP_158528477.1\|1735982_1737554_+\|tail	phage tail protein	A0A076YM66	Mesorhizobium_phage	1.0e-182	62.2
WP_158528478.1\|1737659_1738472_+	hypothetical protein	L7TQY4	Rhizobium_phage	3.4e-33	39.0
WP_127639455.1\|1738484_1738871_+	M15 family metallopeptidase	A9DET4	Yersinia_phage	6.2e-49	69.8
WP_101778005.1\|1739082_1739412_+	hypothetical protein	A0A076YQK0	Mesorhizobium_phage	8.7e-20	52.0
WP_158528628.1\|1740046_1740847_+\|capsid	capsid protein	A0A076YM75	Mesorhizobium_phage	1.8e-114	78.2
WP_127640139.1\|1740921_1741503_+\|tail	phage tail protein	A0A076YQK3	Mesorhizobium_phage	4.3e-54	58.3
WP_158528479.1\|1741505_1743977_+	hypothetical protein	A0A076YL68	Mesorhizobium_phage	4.8e-280	57.0
WP_158528480.1\|1744001_1744454_+	hypothetical protein	A0A076YJ63	Mesorhizobium_phage	5.7e-46	54.8
WP_158528481.1\|1744507_1744990_+	hypothetical protein	A0A076YNW7	Mesorhizobium_phage	2.1e-38	76.1
WP_158528482.1\|1744993_1747345_+	hypothetical protein	A0A076YM79	Mesorhizobium_phage	8.0e-107	35.9
WP_158528483.1\|1747398_1751208_+	hypothetical protein	A0A076YQK7	Mesorhizobium_phage	7.9e-306	47.5
WP_158528484.1\|1751253_1753182_+	hypothetical protein	A0A076YL75	Mesorhizobium_phage	2.5e-42	57.7
WP_158528485.1\|1753181_1753646_+	hypothetical protein	A0A076YJ67	Mesorhizobium_phage	4.7e-19	56.1
WP_127633454.1\|1753692_1753884_+	hypothetical protein	A0A076YNX1	Mesorhizobium_phage	3.3e-11	60.0
WP_158528486.1\|1753873_1754149_+	hypothetical protein	A0A076YM84	Mesorhizobium_phage	4.4e-17	52.8
WP_158528487.1\|1754268_1755978_+\|terminase	phage terminase large subunit	A0A076YJ70	Mesorhizobium_phage	2.0e-253	76.4
WP_158528488.1\|1756377_1756707_-	hypothetical protein	NA	NA	NA	NA
WP_158528489.1\|1756709_1756871_-	hypothetical protein	NA	NA	NA	NA
WP_158528490.1\|1758793_1759630_+	hypothetical protein	A0A076YL19	Mesorhizobium_phage	1.0e-72	55.9

DBSCAN-SWA_4

1816644 : 1891340

Sinorhizobium_phage(33.33%)

tail,terminase,capsid,integrase,transposase,portal,head,protease,tRNA

attL 1810348:1810364|attR 1879767:1879783

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1810348:1810364	attL	NA	NA	NA	NA
WP_015007506.1\|1816644_1817775_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.8e-101	53.2
WP_013844447.1\|1817787_1818198_-	DUF4864 domain-containing protein	NA	NA	NA	NA
WP_013844448.1\|1818422_1819307_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_013844449.1\|1819303_1820089_-	hypothetical protein	NA	NA	NA	NA
WP_010969325.1\|1820098_1820686_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_010969326.1\|1820819_1821404_-	lipoprotein	NA	NA	NA	NA
WP_003529619.1\|1821565_1821706_-	hypothetical protein	NA	NA	NA	NA
WP_013844451.1\|1821895_1822477_-	L,D-transpeptidase	NA	NA	NA	NA
WP_013844452.1\|1822645_1823401_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	1.4e-07	26.6
WP_013844454.1\|1824573_1824786_-	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_041169309.1\|1824920_1826429_+	adenylate cyclase	NA	NA	NA	NA
WP_013844456.1\|1826456_1826849_-	GFA family protein	NA	NA	NA	NA
WP_013844457.1\|1827086_1827809_+	hypothetical protein	NA	NA	NA	NA
WP_015241193.1\|1828096_1829524_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_010969335.1\|1829988_1830825_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_003528321.1\|1830826_1831606_-	TatD family hydrolase	NA	NA	NA	NA
WP_015007510.1\|1831620_1833171_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	3.9e-102	38.4
WP_015007511.1\|1833357_1834389_-	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	5.6e-12	29.2
WP_003528315.1\|1834385_1835090_-	dTMP kinase	M1PSC7	Streptococcus_phage	3.2e-35	40.3
WP_010969340.1\|1835147_1836302_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.1e-43	32.5
WP_003528312.1\|1836358_1837399_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	2.6e-17	51.1
WP_003528311.1\|1837848_1838064_+	hypothetical protein	NA	NA	NA	NA
WP_003528309.1\|1838124_1838385_+	hypothetical protein	NA	NA	NA	NA
WP_015007512.1\|1839191_1840679_+	DUF1254 domain-containing protein	NA	NA	NA	NA
WP_015007513.1\|1840754_1842293_+	DUF1254 domain-containing protein	M1IA53	Paramecium_bursaria_Chlorella_virus	7.7e-34	29.2
WP_015007514.1\|1842659_1842824_+	hypothetical protein	NA	NA	NA	NA
WP_003528303.1\|1843048_1843765_+	transcriptional repressor LexA	A0A0N9RTK0	Paenibacillus_phage	1.2e-05	34.4
WP_127519135.1\|1844103_1845183_-	calcium-binding protein	NA	NA	NA	NA
WP_015007515.1\|1845584_1845932_+	hypothetical protein	NA	NA	NA	NA
WP_003528297.1\|1845979_1846273_-	membrane protein	NA	NA	NA	NA
WP_158528502.1\|1846658_1847993_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_158528503.1\|1848084_1849119_-	ATP-dependent DNA ligase	A0A076GD42	Sinorhizobium_phage	3.9e-122	65.8
WP_158528629.1\|1850141_1850801_+	hypothetical protein	NA	NA	NA	NA
WP_127672054.1\|1850839_1851229_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_127642208.1\|1851438_1853043_+	calcium-binding protein	NA	NA	NA	NA
WP_127642207.1\|1853099_1853465_-	hypothetical protein	A0A076GD39	Sinorhizobium_phage	8.2e-27	65.5
WP_158528504.1\|1853523_1853778_-	hypothetical protein	A0A076G7I0	Sinorhizobium_phage	1.4e-25	74.7
WP_158528505.1\|1853668_1853953_-	hypothetical protein	A0A076G8H8	Sinorhizobium_phage	2.4e-26	61.7
WP_158528630.1\|1853952_1854741_-	secretion activator protein	A0A1V0DY74	Dinoroseobacter_phage	5.0e-29	36.3
WP_158528506.1\|1854966_1855623_+	hypothetical protein	NA	NA	NA	NA
WP_158528507.1\|1855784_1858094_+	glycosyltransferase	NA	NA	NA	NA
WP_158528508.1\|1858090_1858321_+	hypothetical protein	NA	NA	NA	NA
WP_158528509.1\|1858324_1861525_-	hypothetical protein	B4UTR2	Rhizobium_phage	1.1e-82	53.7
WP_158528510.1\|1861553_1864052_-	hypothetical protein	A0A291AUU6	Sinorhizobium_phage	0.0e+00	76.5
WP_158528511.1\|1864121_1864706_-	transcriptional regulator	A0A291AUU9	Sinorhizobium_phage	6.0e-104	90.6
WP_158528512.1\|1864708_1865431_-	hypothetical protein	A0A291AUU7	Sinorhizobium_phage	2.6e-69	57.1
WP_158528513.1\|1865430_1867644_-	tape measure protein	A0A141GEX2	Brucella_phage	7.9e-40	30.4
WP_158528514.1\|1867756_1868185_-	gene transfer agent family protein	A0A141GEX0	Brucella_phage	2.5e-43	69.3
WP_158528515.1\|1868184_1868640_-	hypothetical protein	A0A141GEW9	Brucella_phage	1.9e-33	47.0
WP_158528516.1\|1868709_1868910_-	hypothetical protein	NA	NA	NA	NA
WP_158528517.1\|1868909_1869320_-	DUF3168 domain-containing protein	A0A141GEW7	Brucella_phage	3.1e-22	46.3
WP_158528518.1\|1869316_1869748_-	HK97 gp10 family phage protein	A0A141GEW6	Brucella_phage	5.9e-32	52.0
WP_158528519.1\|1869747_1870092_-\|head,tail	head-tail adaptor protein	B4UTP9	Rhizobium_phage	6.3e-13	36.4
WP_158528520.1\|1870095_1870593_-	hypothetical protein	NA	NA	NA	NA
WP_158528521.1\|1870616_1871204_-	hypothetical protein	A0A141GEW4	Brucella_phage	1.6e-48	49.0
WP_158528522.1\|1871219_1871591_-	hypothetical protein	NA	NA	NA	NA
WP_158528523.1\|1871652_1872093_-	hypothetical protein	NA	NA	NA	NA
WP_127650611.1\|1872170_1873451_-\|capsid	phage major capsid protein	A0A141GEW2	Brucella_phage	4.7e-85	44.0
WP_158528524.1\|1873596_1874454_-\|protease	Clp protease ClpP	A0A0U4B0F3	Pseudomonas_phage	9.8e-63	50.4
WP_158528525.1\|1874526_1875804_-\|portal	phage portal protein	Q8W629	Enterobacteria_phage	8.6e-63	38.4
WP_158528526.1\|1875817_1877524_-\|terminase	terminase large subunit	I3ULZ6	Rhodobacter_phage	6.9e-193	60.6
WP_158528527.1\|1877507_1877999_-	hypothetical protein	I3ULZ5	Rhodobacter_phage	1.1e-29	45.5
WP_158528528.1\|1878085_1878343_-	hypothetical protein	A0A068C9A1	Rhizobium_phage	2.1e-13	52.4
WP_088202070.1\|1878388_1878751_-	HNH endonuclease	I3ULZ4	Rhodobacter_phage	2.0e-33	58.0
WP_158528529.1\|1878956_1879616_-	antitermination protein NusG	NA	NA	NA	NA
WP_158528530.1\|1879599_1880856_-	helix-turn-helix domain-containing protein	A0A291AUS5	Sinorhizobium_phage	2.9e-156	72.3
1879767:1879783	attR	NA	NA	NA	NA
WP_158528531.1\|1880852_1881125_-	hypothetical protein	A0A0B5A2H1	Paracoccus_phage	8.0e-11	47.1
WP_158528532.1\|1881124_1881427_-	hypothetical protein	A0A291AUT2	Sinorhizobium_phage	1.5e-21	61.5
WP_158528533.1\|1881423_1882554_-	hypothetical protein	B4UTW9	Rhizobium_phage	1.8e-27	30.8
WP_158528534.1\|1884085_1884994_-	chromosome partitioning protein ParB	A0A0U2C144	Paracoccus_phage	1.0e-41	45.1
WP_158528535.1\|1885103_1885562_-	hypothetical protein	A0A291AUS4	Sinorhizobium_phage	1.1e-33	53.5
WP_088202078.1\|1885788_1886040_-	hypothetical protein	R9TNB3	Rhizobium_phage	5.1e-12	52.0
WP_088202207.1\|1886128_1886830_+	LexA family transcriptional regulator	R9TRS6	Rhizobium_phage	3.6e-55	46.8
WP_127663898.1\|1887051_1887234_+	hypothetical protein	NA	NA	NA	NA
WP_088202080.1\|1887354_1887528_+	hypothetical protein	NA	NA	NA	NA
WP_158528536.1\|1887524_1887770_+	hypothetical protein	NA	NA	NA	NA
WP_158528537.1\|1887784_1888117_+	hypothetical protein	A0A291AUJ8	Sinorhizobium_phage	2.8e-05	37.4
WP_158528538.1\|1888113_1888776_+	hypothetical protein	NA	NA	NA	NA
WP_158528539.1\|1888768_1889023_+	hypothetical protein	A0A291AUJ5	Sinorhizobium_phage	9.7e-19	70.4
WP_158528540.1\|1889178_1889433_+	acyl carrier protein	NA	NA	NA	NA
WP_158528541.1\|1889429_1889738_+	hypothetical protein	NA	NA	NA	NA
WP_158528542.1\|1889734_1890430_+	hypothetical protein	Q8W6F5	Sinorhizobium_phage	2.7e-63	53.1
WP_158528543.1\|1890426_1890966_+	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	3.2e-27	45.8
WP_158528544.1\|1890962_1891340_+	HNH endonuclease	A0A291AUJ4	Sinorhizobium_phage	4.3e-47	69.1

DBSCAN-SWA_5

2173593 : 2245740

Sinorhizobium_phage(72.09%)

tail,terminase,capsid,integrase,transposase,portal,head,protease,tRNA

attL 2187312:2187329|attR 2231831:2231848

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011970797.1\|2173593_2174540_-\|transposase	IS630-like element ISRm2011-2 family transposase	S5VXX4	Leptospira_phage	1.0e-12	24.7
WP_003535109.1\|2174776_2175481_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_080599758.1\|2175600_2176332_-	DUF2270 domain-containing protein	NA	NA	NA	NA
WP_003535118.1\|2176570_2177398_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015007660.1\|2177465_2178335_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_127518921.1\|2178331_2179033_+	DNA alkylation repair protein	NA	NA	NA	NA
WP_003535303.1\|2179077_2179566_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_010969535.1\|2179630_2180260_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA
WP_127518922.1\|2180252_2180840_-	thermonuclease family protein	NA	NA	NA	NA
WP_010969537.1\|2181121_2182657_+	HAMP domain-containing histidine kinase	Q8QKV7	Ectocarpus_siliculosus_virus	2.2e-20	32.9
WP_015007662.1\|2182685_2183099_-	diacylglycerol kinase	NA	NA	NA	NA
WP_015007663.1\|2183303_2184320_-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
WP_015007664.1\|2184458_2185247_+	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
WP_003535317.1\|2185293_2185515_+	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_010969540.1\|2185511_2186213_+\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_003535321.1\|2186232_2186994_-	ABC transporter permease	NA	NA	NA	NA
WP_003535323.1\|2186990_2187917_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	9.7e-24	34.7
2187312:2187329	attL	NA	NA	NA	NA
WP_015007665.1\|2188037_2188355_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_153444763.1\|2188365_2188524_-	hypothetical protein	NA	NA	NA	NA
WP_107592058.1\|2188994_2190191_-	extensin family protein	NA	NA	NA	NA
WP_041169322.1\|2190440_2190995_-	membrane protein	NA	NA	NA	NA
WP_015007668.1\|2191228_2193043_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.5e-12	47.2
WP_015007669.1\|2193252_2193642_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_010969549.1\|2193653_2194244_+	hypothetical protein	NA	NA	NA	NA
WP_003535339.1\|2194273_2194627_-	DMT family protein	NA	NA	NA	NA
WP_003535341.1\|2194841_2197799_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_015007671.1\|2198959_2199577_-	J domain-containing protein	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	1.5e-09	48.3
WP_153444809.1\|2199721_2199871_-	hypothetical protein	NA	NA	NA	NA
WP_127518430.1\|2199867_2200113_-	hypothetical protein	NA	NA	NA	NA
WP_003535347.1\|2200409_2200622_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	5.6e-12	54.5
WP_127637918.1\|2200750_2201881_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_102903019.1\|2201999_2203088_+\|integrase	site-specific integrase	I6NSG1	Burkholderia_phage	3.1e-114	58.7
WP_127516906.1\|2203630_2204089_+	hypothetical protein	NA	NA	NA	NA
WP_127637916.1\|2204091_2204622_+	hypothetical protein	NA	NA	NA	NA
WP_127637917.1\|2204962_2205331_-	hypothetical protein	NA	NA	NA	NA
WP_028054130.1\|2206391_2207249_+	hypothetical protein	NA	NA	NA	NA
WP_127637920.1\|2207402_2207969_+	glutamate acetyltransferase	NA	NA	NA	NA
WP_158528557.1\|2211884_2212601_+	necrosis-inducing protein	NA	NA	NA	NA
WP_102045481.1\|2212862_2213189_-	hypothetical protein	A0A291AUN9	Sinorhizobium_phage	4.9e-47	84.9
WP_127637906.1\|2213189_2213414_-	hypothetical protein	J7F8X5	Agrobacterium_phage	2.0e-15	63.6
WP_127637899.1\|2213554_2214370_-	hypothetical protein	NA	NA	NA	NA
WP_127637900.1\|2214627_2214966_-	hypothetical protein	A0A291AUN7	Sinorhizobium_phage	6.4e-26	70.8
WP_127637901.1\|2214952_2215300_-	hypothetical protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	2.6e-22	47.4
WP_127637902.1\|2215299_2216400_-\|tail	phage tail protein	A0A291AUN5	Sinorhizobium_phage	6.7e-32	55.8
WP_127637903.1\|2216411_2217926_-	hypothetical protein	A0A2D2W219	Sinorhizobium_phage	4.2e-266	88.2
WP_127637904.1\|2217925_2220583_-\|tail	phage tail protein	A0A291AUN1	Sinorhizobium_phage	3.6e-265	64.2
WP_127635017.1\|2220589_2220994_-	hypothetical protein	A0A291AUN0	Sinorhizobium_phage	2.9e-49	73.9
WP_011976009.1\|2221063_2221336_+	hypothetical protein	NA	NA	NA	NA
WP_088203338.1\|2221468_2222059_-	DUF2163 domain-containing protein	A0A291AUM8	Sinorhizobium_phage	1.8e-76	72.6
WP_158528558.1\|2222055_2222706_-	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	5.5e-66	62.2
WP_158528559.1\|2222705_2224577_-\|tail	tail tape measure protein	A0A291AUM6	Sinorhizobium_phage	2.3e-181	58.7
WP_088203335.1\|2224850_2225096_-\|tail	phage tail assembly chaperone	A0A291AUN4	Sinorhizobium_phage	8.8e-25	67.1
WP_088203334.1\|2225089_2225491_-	hypothetical protein	A0A291AUM7	Sinorhizobium_phage	1.7e-49	77.5
WP_011975792.1\|2225505_2225916_-\|tail	tail protein	A0A291AUM5	Sinorhizobium_phage	3.7e-52	76.5
WP_127632633.1\|2226009_2226474_-	hypothetical protein	A0A291AUM4	Sinorhizobium_phage	7.9e-51	67.5
WP_127637953.1\|2226475_2226772_-	hypothetical protein	A0A291AUM3	Sinorhizobium_phage	2.3e-27	65.3
WP_018210832.1\|2226774_2227101_-	hypothetical protein	A0A291AUL9	Sinorhizobium_phage	1.6e-34	70.8
WP_127637828.1\|2227097_2227502_-	hypothetical protein	NA	NA	NA	NA
WP_127632610.1\|2227578_2228610_-\|capsid	major capsid protein	A0A291AUL7	Sinorhizobium_phage	8.4e-178	86.8
WP_127637829.1\|2228637_2228994_-\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	8.5e-45	80.5
WP_127637830.1\|2228996_2229548_-	hypothetical protein	A0A291AUL6	Sinorhizobium_phage	3.3e-35	69.8
WP_014529608.1\|2229572_2230478_-	S49 family peptidase	A0A291AUM2	Sinorhizobium_phage	3.1e-144	86.1
WP_158528560.1\|2230474_2232196_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	4.5e-285	83.4
2231831:2231848	attR	NA	NA	NA	NA
WP_013844551.1\|2232192_2232429_-\|head,tail	head-to-tail joining protein	A0A291AUL5	Sinorhizobium_phage	1.5e-26	82.1
WP_158528561.1\|2232439_2234482_-\|terminase	terminase	A0A291AUK9	Sinorhizobium_phage	0.0e+00	89.4
WP_158528562.1\|2234478_2235120_-	hypothetical protein	A0A291AUL0	Sinorhizobium_phage	6.2e-54	58.0
WP_013844554.1\|2235269_2236016_-	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	7.3e-115	83.5
WP_013844555.1\|2236255_2236921_-	NusG antitermination factor	A0A291AUS6	Sinorhizobium_phage	1.7e-38	43.4
WP_041915080.1\|2236904_2238158_-	helix-turn-helix domain-containing protein	A0A291AUS5	Sinorhizobium_phage	2.1e-154	71.8
WP_013844557.1\|2238268_2238517_+	DUF982 domain-containing protein	NA	NA	NA	NA
WP_158528563.1\|2238522_2238828_-	hypothetical protein	A0A291AUK8	Sinorhizobium_phage	1.3e-17	51.0
WP_013844559.1\|2238824_2240348_-	S-adenosylmethionine-binding protein	F8TVB4	EBPR_siphovirus	8.5e-17	33.7
WP_013844561.1\|2240490_2240733_-	hypothetical protein	NA	NA	NA	NA
WP_013844562.1\|2240732_2240954_-	hypothetical protein	NA	NA	NA	NA
WP_013844563.1\|2240953_2241409_-	hypothetical protein	NA	NA	NA	NA
WP_013844564.1\|2241627_2241873_-	hypothetical protein	NA	NA	NA	NA
WP_013844565.1\|2241959_2242733_+	LexA family transcriptional regulator	A0A141GF24	Brucella_phage	2.3e-63	52.7
WP_013844566.1\|2242981_2243167_+	hypothetical protein	NA	NA	NA	NA
WP_013844567.1\|2243289_2243463_+	hypothetical protein	NA	NA	NA	NA
WP_013844568.1\|2243475_2243655_+	hypothetical protein	NA	NA	NA	NA
WP_127637852.1\|2243785_2244208_+	ASCH domain-containing protein	A0A291AUQ6	Sinorhizobium_phage	4.0e-41	52.9
WP_127637849.1\|2244204_2244552_+	DUF4326 domain-containing protein	A0A291AUQ7	Sinorhizobium_phage	3.2e-12	35.3
WP_013844572.1\|2244548_2245082_+	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	3.6e-31	47.5
WP_013844573.1\|2245078_2245450_+	HNH endonuclease	A0A291AUJ4	Sinorhizobium_phage	1.8e-45	68.0
WP_013844574.1\|2245446_2245740_+	hypothetical protein	I6NSR8	Burkholderia_phage	2.0e-23	62.4

DBSCAN-SWA_6

2383152 : 2415149

Sinorhizobium_phage(61.29%)

tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003530010.1\|2383152_2383341_+	type II toxin-antitoxin system HicA family toxin	A0A0R6PJD4	Moraxella_phage	3.7e-15	60.0
WP_010969659.1\|2383345_2383807_+	type II toxin-antitoxin system HicB family antitoxin	A0A0U4ISP5	Pseudomonas_phage	2.6e-17	43.4
WP_086019424.1\|2384354_2384588_-	hypothetical protein	A0A291AUV6	Sinorhizobium_phage	8.1e-20	71.9
WP_086019425.1\|2384500_2384914_-	hypothetical protein	A0A291AUP8	Sinorhizobium_phage	6.2e-39	73.6
WP_026030921.1\|2384865_2385252_-	hypothetical protein	A0A291AUP8	Sinorhizobium_phage	9.0e-32	76.2
WP_017266546.1\|2386097_2386271_-	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_026029857.1\|2387090_2387294_-	hypothetical protein	NA	NA	NA	NA
WP_158528572.1\|2387938_2388304_-	hypothetical protein	A0A076GD39	Sinorhizobium_phage	3.4e-41	71.7
WP_017274957.1\|2388362_2388617_-	hypothetical protein	A0A076G7I0	Sinorhizobium_phage	6.3e-26	75.9
WP_026030459.1\|2388507_2388792_-	hypothetical protein	A0A076G8H8	Sinorhizobium_phage	5.2e-29	68.1
WP_158528573.1\|2388791_2389109_-	ammonia monooxygenase	A0A291AUV3	Sinorhizobium_phage	7.6e-37	64.8
WP_127650796.1\|2389108_2390077_-	glycoside hydrolase family 19 protein	A0A076G6J8	Sinorhizobium_phage	5.3e-166	87.7
WP_127650794.1\|2390273_2390447_+	hypothetical protein	NA	NA	NA	NA
WP_017266899.1\|2390578_2390839_+	hypothetical protein	NA	NA	NA	NA
WP_017266903.1\|2391275_2391611_-	hypothetical protein	A0A291AUN7	Sinorhizobium_phage	3.2e-25	67.4
WP_017266737.1\|2391597_2391945_-	hypothetical protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	6.4e-21	46.5
WP_017275164.1\|2391944_2393069_-	hypothetical protein	A0A291AUN5	Sinorhizobium_phage	6.4e-30	53.9
WP_127642336.1\|2393080_2394589_-	hypothetical protein	A0A2D2W219	Sinorhizobium_phage	1.3e-280	92.6
WP_158528574.1\|2394588_2394795_-	hypothetical protein	NA	NA	NA	NA
WP_158528575.1\|2394810_2397558_-\|tail	phage tail protein	A0A291AUN1	Sinorhizobium_phage	4.2e-256	61.1
WP_017274609.1\|2397564_2397969_-	hypothetical protein	A0A291AUN0	Sinorhizobium_phage	7.6e-50	74.6
WP_017274610.1\|2398068_2398659_-	DUF2163 domain-containing protein	A0A291AUM8	Sinorhizobium_phage	2.7e-72	68.0
WP_158528576.1\|2398655_2399309_-	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	7.0e-53	54.1
WP_086019413.1\|2399408_2399768_+	hypothetical protein	NA	NA	NA	NA
WP_017265436.1\|2399764_2401855_-	hypothetical protein	A0A076G7H2	Sinorhizobium_phage	2.3e-17	64.4
WP_017265437.1\|2401914_2402310_+	hypothetical protein	NA	NA	NA	NA
WP_017265438.1\|2402475_2403009_-	hypothetical protein	NA	NA	NA	NA
WP_017265439.1\|2403077_2403320_-	hypothetical protein	NA	NA	NA	NA
WP_017265440.1\|2403415_2403817_-	hypothetical protein	NA	NA	NA	NA
WP_017265441.1\|2403831_2404317_-	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	3.2e-10	30.4
WP_017265442.1\|2404318_2404744_-	hypothetical protein	NA	NA	NA	NA
WP_017265443.1\|2404950_2405397_-	hypothetical protein	A0A076G8G8	Sinorhizobium_phage	7.2e-17	37.8
WP_017274451.1\|2405396_2406434_-\|head	head morphogenesis protein SPP1 gp7	A0A076G6I6	Sinorhizobium_phage	2.2e-77	50.0
WP_017265444.1\|2406512_2407022_+	lipocalin family protein	A0A1W6JNX6	Morganella_phage	2.7e-20	37.5
WP_017265446.1\|2407319_2407685_-	hypothetical protein	A0A076G8G5	Sinorhizobium_phage	5.1e-45	74.2
WP_015007748.1\|2407765_2407927_+	hypothetical protein	NA	NA	NA	NA
WP_017265448.1\|2407950_2408445_-	hypothetical protein	A0A2R3UAR2	Siphoviridae_environmental_samples	4.2e-18	40.5
WP_017265449.1\|2408475_2408823_-	hypothetical protein	A0A2H4J908	uncultured_Caudovirales_phage	6.9e-07	47.5
WP_102761261.1\|2408837_2409815_-	DUF2184 domain-containing protein	A0A2H4J526	uncultured_Caudovirales_phage	8.1e-138	74.9
WP_017265451.1\|2409840_2410311_-	hypothetical protein	A0A2H4J1G1	uncultured_Caudovirales_phage	6.0e-38	61.3
WP_158528577.1\|2410323_2411469_-	DUF2213 domain-containing protein	A0A2R3UA67	Siphoviridae_environmental_samples	1.4e-77	49.0
WP_017265453.1\|2411519_2412389_+	hypothetical protein	NA	NA	NA	NA
WP_127650848.1\|2412534_2412789_+	hypothetical protein	NA	NA	NA	NA
WP_017265454.1\|2412968_2413790_+	trypsin-like peptidase domain-containing protein	A0A2H4JE36	uncultured_Caudovirales_phage	2.2e-35	32.7
WP_127657879.1\|2413769_2415149_-	DUF1073 domain-containing protein	L7TRA1	Rhizobium_phage	2.6e-129	52.4

DBSCAN-SWA_7

2419935 : 2425255

Sinorhizobium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017265621.1\|2419935_2420469_+	ImmA/IrrE family metallo-endopeptidase	Q9G094	Leptospira_phage	1.2e-07	30.2
WP_017273061.1\|2420817_2421423_-	hypothetical protein	A0A076G6H3	Sinorhizobium_phage	2.0e-17	38.6
WP_017265623.1\|2421435_2421843_-	GcrA cell cycle regulator	NA	NA	NA	NA
WP_127650842.1\|2421839_2422616_-	hypothetical protein	NA	NA	NA	NA
WP_158528578.1\|2422557_2423412_-	hypothetical protein	M4QM11	Sulfitobacter_phage	2.2e-14	34.8
WP_158528579.1\|2423408_2423600_-	hypothetical protein	NA	NA	NA	NA
WP_158528580.1\|2423596_2424472_-	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase	A0A1P8VV89	Erythrobacter_phage	3.7e-65	45.7
WP_158528581.1\|2424473_2424689_-	hypothetical protein	A0A076G6Y4	Sinorhizobium_phage	1.3e-08	71.8
WP_158528582.1\|2424685_2425255_-	hypothetical protein	A0A1X9SGV5	Bradyrhizobium_phage	2.8e-29	42.6

DBSCAN-SWA_8

2723595 : 2733230

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003532953.1\|2723595_2725650_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-35	33.6
WP_107010522.1\|2725738_2725864_-	hypothetical protein	NA	NA	NA	NA
WP_013844736.1\|2726082_2727117_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	4.1e-15	68.6
WP_010969853.1\|2727140_2728328_-	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	9.2e-35	27.8
WP_010969854.1\|2728587_2730498_-	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.1e-74	35.7
WP_010969855.1\|2730543_2732547_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-87	41.5
WP_003532937.1\|2732780_2733230_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.0e-15	38.4

DBSCAN-SWA_9

2764957 : 2814516

Klosneuvirus(14.29%)

holin,protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_127522485.1\|2764957_2765677_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003534512.1\|2765732_2766038_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_010969876.1\|2766268_2767372_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_003534506.1\|2767844_2768300_+	MaoC family dehydratase	NA	NA	NA	NA
WP_010969877.1\|2768296_2768767_+	MaoC family dehydratase	NA	NA	NA	NA
WP_003534501.1\|2768812_2769355_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.5e-35	45.5
WP_010969878.1\|2769529_2769715_+	DUF1059 domain-containing protein	NA	NA	NA	NA
WP_010969879.1\|2769733_2770993_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A1B0V011	Roseobacter_phage	4.3e-51	42.1
WP_010969880.1\|2770989_2771622_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_127522483.1\|2771618_2772242_-	DUF1285 domain-containing protein	NA	NA	NA	NA
WP_013844747.1\|2772600_2773614_+	MoxR family ATPase	NA	NA	NA	NA
WP_010969883.1\|2773617_2774538_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_010969884.1\|2774534_2777348_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_010969885.1\|2777358_2779428_+	membrane protein	NA	NA	NA	NA
WP_127522435.1\|2779442_2779994_-	N-acetyltransferase	NA	NA	NA	NA
WP_010969887.1\|2780251_2781244_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_010969888.1\|2781409_2781616_+	antitoxin VbhA family protein	NA	NA	NA	NA
WP_010969889.1\|2781678_2782587_+	cell filamentation protein	NA	NA	NA	NA
WP_010969890.1\|2782711_2783203_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_003534453.1\|2783285_2784188_+	metallophosphoesterase	NA	NA	NA	NA
WP_010969891.1\|2784381_2784897_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_003534449.1\|2784900_2785728_+	anti-sigma factor	NA	NA	NA	NA
WP_003534446.1\|2785850_2786279_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_010969893.1\|2786275_2786527_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_010969894.1\|2786664_2788374_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_003534440.1\|2788474_2788612_-	hypothetical protein	NA	NA	NA	NA
WP_003534438.1\|2788845_2789433_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.1e-28	37.3
WP_010969897.1\|2791472_2792384_-	aminoglycoside phosphotransferase APH(3')	Q75ZG1	Hepacivirus	8.6e-17	30.2
WP_010969898.1\|2792415_2792880_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-28	47.1
WP_010969899.1\|2792876_2793797_-	cation transporter	NA	NA	NA	NA
WP_010969900.1\|2793965_2796155_-	anthranilate synthase	NA	NA	NA	NA
WP_010969901.1\|2796428_2798660_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_014529145.1\|2798783_2799770_+	extensin family protein	NA	NA	NA	NA
WP_010969903.1\|2799930_2801610_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_010969904.1\|2801700_2802924_-	DUF2333 family protein	NA	NA	NA	NA
WP_010969905.1\|2802927_2804217_-	hypothetical protein	NA	NA	NA	NA
WP_003537933.1\|2804400_2805564_+\|transposase	IS4-like element ISRm16 family transposase	NA	NA	NA	NA
WP_010969906.1\|2805741_2806146_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_010969907.1\|2806258_2808175_-	ATP-binding protein	NA	NA	NA	NA
WP_010969908.1\|2808178_2809327_-	hypothetical protein	NA	NA	NA	NA
WP_003535848.1\|2809388_2810477_-	hypothetical protein	NA	NA	NA	NA
WP_010969910.1\|2810637_2811225_-	thymidine kinase	A0A0K2FHC3	Enterobacter_phage	4.1e-52	54.7
WP_010969911.1\|2811511_2812468_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013844756.1\|2812624_2813470_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_010969913.1\|2813466_2814516_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-20	33.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP026526

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP026526_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026526_1

534446-534555

Orphan

Consensus_repeat	Method
TCATCCCGGCGGTCCCGCCGCGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP026526_1

>merge|NZ_CP026526|1|534446-534555|CRISPRCasFinder
TCATCCCGGCGGTCCCGCCGCGCGGCGATCAGGTCCATGAGCCGCTCGCGCCGGTCGCCGCGGTCGCCGATCAGTTCCATCAGGTCATCACGGCGGTCCCGCCGCGCGGC

>NZ_CP026526|1|1|534446-534555|CRISPRCasFinder
TCATCCCGGCGGTCCCGCCGCGCGGC	GATCAGGTCCATGAGCCGCTCGCGCCGGTCGCCGCGGTCGCCGATCAGTTCCATCAGG
TCATCACGGCGGTCCCGCCGCGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026526.1\|WP_095918778.1\|527705_528377_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341362
NZ_CP026526.1\|WP_088194663.1\|544822_546052_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP026526.1\|WP_041169964.1\|533715_534063_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026526.1\|WP_095926476.1\|546162_547008_+\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
NZ_CP026526.1\|WP_095926477.1\|547170_547848_-\|VIT-family-protein	unknown	unknown	gnl\|CDD\|376705
NZ_CP026526.1\|WP_010967341.1\|539728_540364_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|236494
NZ_CP026526.1\|WP_010967342.1\|540478_540748_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026526.1\|WP_095918780.1\|528370_528694_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026526.1\|WP_041169963.1\|533474_533675_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288799
NZ_CP026526.1\|WP_095926475.1\|532657_533008_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026526.1\|WP_010967330.1\|529860_530265_+\|BA14K-family-protein	unknown	unknown	gnl\|CDD\|369573
NZ_CP026526.1\|WP_010967329.1\|529200_529458_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026526.1\|WP_095918786.1\|533089_533377_+\|DUF1612-domain-containing-protein	unknown	unknown	gnl\|CDD\|336802
NZ_CP026526.1\|WP_088194664.1\|544330_544819_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026526.1\|WP_095918776.1\|526621_527008_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026526.1\|WP_088194909.1\|542688_543834_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|182881
NZ_CP026526.1\|WP_015242499.1\|539191_539671_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026526.1\|WP_158528735.1\|524358_525930_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|223740
NZ_CP026526.1\|WP_158528448.1\|536103_537164_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP026526.1\|WP_095918790.1\|540888_542646_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227903

Protein	Function_ID	Function_description	E-value
NZ_CP026526.1\|WP_095918778.1\|527705_528377_+\|CBS-domain-containing-protein	gnl\|CDD\|341362	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.27807e-53
NZ_CP026526.1\|WP_158528448.1\|536103_537164_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.5988e-21
NZ_CP026526.1\|WP_095926477.1\|547170_547848_-\|VIT-family-protein	gnl\|CDD\|376705	pfam01988, VIT1, VIT family. This family includes the vacuolar Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron transporter VIT1.	0.000957073
NZ_CP026526.1\|WP_010967341.1\|539728_540364_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|236494	PRK09391, fixK, transcriptional regulator FixK; Provisional.	7.98396e-108
NZ_CP026526.1\|WP_041169963.1\|533474_533675_+\|hypothetical-protein	gnl\|CDD\|288799	pfam11972, HTH_13, HTH DNA binding domain. This is a helix-turn-helix DNA binding domain.	2.08501e-15
NZ_CP026526.1\|WP_010967330.1\|529860_530265_+\|BA14K-family-protein	gnl\|CDD\|369573	pfam07886, BA14K, BA14K-like protein. The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus and by Brucella suis. BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process.	8.86752e-10
NZ_CP026526.1\|WP_095918786.1\|533089_533377_+\|DUF1612-domain-containing-protein	gnl\|CDD\|336802	pfam07756, DUF1612, Protein of unknown function (DUF1612). This family includes sequences of largely unknown function but which share a number of features in common. They are expressed by bacterial species, and in many cases these bacteria are known to associate symbiotically with plants. Moreover, the majority are coded for by plasmids, which in many cases are known to confer on the organism the ability to interact symbiotically with leguminous plants. An example of such a plasmid is NGR234, which encodes Y4CF, a protein of unknown function that is a member of this family. Other members of this family are expressed by organisms with a documented genomic similarity to plant symbionts.	4.98576e-36
NZ_CP026526.1\|WP_088194663.1\|544822_546052_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	1.56393e-69
NZ_CP026526.1\|WP_088194909.1\|542688_543834_-\|AI-2E-family-transporter	gnl\|CDD\|182881	PRK10983, PRK10983, AI-2E family transporter YdiK.	1.04982e-43
NZ_CP026526.1\|WP_158528735.1\|524358_525930_-\|mechanosensitive-ion-channel	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.05088e-48
NZ_CP026526.1\|WP_095926476.1\|546162_547008_+\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	3.91622e-143
NZ_CP026526.1\|WP_095918790.1\|540888_542646_+\|hypothetical-protein	gnl\|CDD\|227903	COG5616, COG5616, Predicted integral membrane protein [Function unknown].	1.34111e-51

>NZ_CP026526.1|WP_041169964.1|533715_534063_-|hypothetical-protein
MNKFLLMTAGLLLMPLPALSQSAPDSGSRDPGSIQDREIEDLLRSITDEVSGGSGGPRRGAAFLLRSGDATVAVRCDPRESMKDCVDLTTSLLEKARSAMPTGGGAPGTAPPPRP
>NZ_CP026526.1|WP_041169963.1|533474_533675_+|hypothetical-protein
MPELVDLVMARPLVSASMVAKTLDVTPQAARRIVLELGLREIALVTVDDAASLVLRIVNTLQECFR
>NZ_CP026526.1|WP_095918786.1|533089_533377_+|DUF1612-domain-containing-protein
MDEDARLEEWRGVLRQAHDLPPVLQAIVALDAWNVLSVLQHAPWLGRVLAASILRQAGVTASAHLAAVNLGLETMPVERRRHRDRNFQLLALPMG
>NZ_CP026526.1|WP_095926475.1|532657_533008_+|hypothetical-protein
MQNDIGGELVHLEDLVLDDATKNVRTPTHELTIAPDVLKSRRRINTQPPGLSAAGLRSLRGRDFVSGSPAASSAADGTVEVTTDPDVDRSTEGGDESNGDVSVFGAEFVAIDAVLA
>NZ_CP026526.1|WP_010967330.1|529860_530265_+|BA14K-family-protein
MKAPTLAFAVLASAIGMSPAKAQTCIGICNGGTGGTTNHNLFIEREYRDFLQQRYPNYGSRYRGMRPDISIGPGATVGGPRVGVRQQFRLRQRMVIDANKHLRWCQERYLSYRLADDTFQPFEGARRPCNSPYN
>NZ_CP026526.1|WP_010967329.1|529200_529458_+|hypothetical-protein
MTAAPVTEKSRYRSRPPSLYAPWWKSKEVITPSVIGGGASLLTVIGGIPWQNLLLILVAFGAIAGFLYWRKNADRRAVARVEGMA
>NZ_CP026526.1|WP_095918780.1|528370_528694_-|hypothetical-protein
MATGAGHGTRGPKGVRVDPTTALPTEAEVLARLDRIRFSTEFDAPGRARQFLAYVVRETTAGRADRIRAYSIATEVFGRDSSFDAQTDAAVRIEGVAEKWFCERQRY
>NZ_CP026526.1|WP_095918778.1|527705_528377_+|CBS-domain-containing-protein
MHVKDVMTAKVVKLSPDNSVRQAAKLMFDHHVSGVPVVDDDGHLLGVISEGDLIRRAELCSEASVLMADMAIDPDDRANAFIRRCSWRVGDVMTANPVTIEEEAPLARVAGLMQERGIKRIPVVRDGELGGIVSRADLLQAIFSTKPDETAAGDEAIRRSILVRLGENTSLEELDVTVTVTEGIVHFWGQVETAGCRRAARIMAESVHGVRGIVEHFPDPYTQ
>NZ_CP026526.1|WP_095918776.1|526621_527008_-|hypothetical-protein
MGTPVLDQVGFEMIVYVAEISGRGIAAFDAANDIEAQAQLANRGLLRDLIVLQNEGRALWDGVAEIHVRTATPEETEIWQTSRTAAVQSGEDSDDEGRHVFLVPVVDPSHDNFDDDDNPHHDDDRDGD
>NZ_CP026526.1|WP_158528735.1|524358_525930_-|mechanosensitive-ion-channel
MASVGSFLAFEWPPLLRKIILALLLAVIVFRVVRAIGKLLFALSGASGIADQPSSAFESDAARRFWLWRISIIAGFLLFGWAIVSLMPALSFSNEVTRLAAFLFGLGILVTAVEVVWRRPDKPASLVIKSLLSLYLVVLWSAWVAGLLGLLWLGIYSLLLPPLVRGVGDVAQALATRAQRTGPSGIVLSVVIVRGARAAVIAAAVAWLAYIWRIRAAALAGSEPGAIVIPGLLNGIIALLVADLLWQMSKALIAYRMGLGPKDGSNVDELARSGRLRTLLPIFRNVLAVFIGAVTVLTILSGLGVQIAPLIAGAGIFGVAIGFGSQTLVKDVLSGVFYMLDDAFRVGEYIQSGSYKGTVESFSLRSVRLRHHRGPIFTVPFGELGAVQNMSRDWVIDKMTLNVTYDADVDLARKLIKKVGQELAADPEFAADTIEPLKMQGVDSFGDFAIVLRMKLMTKPGAQFTIKRRAFMMIKKAFDENGIKIAVPTVHVSGGSDNAAAAQQVLNMRKAAELAANKAPVAP
>NZ_CP026526.1|WP_158528448.1|536103_537164_+|IS630-family-transposase
MGSAISLRSDFDGNGLRLLARQTKDASQARRLLALASIYDGGSRADAARLGSVTVQIVRDWVVRFNARGPDGLINGKAPGKPSLLNDDQRSALAQAIERGPTPYLDGVVRWRLCDLAQWLWEQFRVSVSEQTLGREVRSMGYRKLSARPRHHAQDAEAAEAFKKNFPAAVAEIAVGPAKGKMIEVWFQDEARIGQKNKITRRWAKRGSRPSAPHDQRTRSAYIFGAICPSQGKAAALVMPWCDTHAMNQHLIEISRNVAHDAHAILIMDQAGWHMSNNLMVPENITILPLPPKSPELNPVENIWQFMRENWLSNRVFKSYEDIVDHCCHAWRTLQDRPWKIMSIGQRQWAHGF
>NZ_CP026526.1|WP_015242499.1|539191_539671_+|hypothetical-protein
MRATWAIPVAALVLLLDSSDGTAGQPGKSADQPSKYVPSVGEIMNKIDLSRSKLWYSVKLRNWALAGYQLDQVKTGFDDVSRHHPDKSNFDFANAQKIANLIEEAIVARSDEQFQQSFALMTTECNDCHRAVGKPFLHVGAPKIPSPYSDKMLEPGAFR
>NZ_CP026526.1|WP_010967341.1|539728_540364_-|helix-turn-helix-domain-containing-protein
MNTSISASWGRYINAIPPRSGEAALAPLSSFVDGQCIYSFGERADQVYQVEFGAVRVYRLAANGRRQILAFHFGGNWFGLQSRDRHSSNAEAIGVTGVRCISLQEEPLFRPALFSAALDNVSAAQEHQLVIGRQSAIERVAAFLLEMSERSGYSRRFELSMSRVDVADYLALTVETVSRSLTKLKHRGFIELHGARGIELVGYRALQNLCL
>NZ_CP026526.1|WP_010967342.1|540478_540748_-|hypothetical-protein
MNGEPDWKHCMAAALRRFPARSLQIRELSMRDEDFRGMCEDFAAAENALAAVDQLPLHIREERRAEFKGLIESLAAEIAIALGPADGSI
>NZ_CP026526.1|WP_095918790.1|540888_542646_+|hypothetical-protein
MTIADRGSVRAGSPTALPTNTEILSQLDRIRLSAEFDVPDRARKFLAYIVGEAIAGRADRIKAYSIATEVFGRDSSFDAQTDPVVRIEAGRIRRALERYYFVAGSNDPIVIKIPKGGYAPAFEKRDGAPYQLSSGQAANVQSRSMPLEQTALWVSVATVGLLTCGLLANAFFGSAATTIESLTKPGGTRPSIPKLMVMPFEDLSQTPQSAMITRGLTDEVISNIAKFKEIVVVAGPAAPNPHIAEREYPAFALEGRVRLDGDKLRLGIRLVQHSDGSVVWANTYDEVLQPRKIIELQQNAAAAVASAIAQPYGIVFQANATHFMRSVPDDWQAYACTLAYYGYRGDLNPQTHATVQECLQQATTQFPDYATAWALLSLTYVDELRFRYRLHRSTTVSLAHAIEAAARAVELDPQNVRALQAEMLTLFFRGEVNAALTVGARAYAINPNDTELSGEYGFRLALSGQWRSGCDLVSKTVASNPGPVGYFEAALAVCRYIEHDYVAAERWARSADLHANPIYHVILLAILGKLGKMDLARTEREWLETNVPGFLENARNEVALRIHRPEDQQHFIEGLRQAGVSIPGK
>NZ_CP026526.1|WP_088194909.1|542688_543834_-|AI-2E-family-transporter
MDDNPSSQRNPDPVNPAARPSIEPRITEIARIGLVGLFAYWSFTLIAPFAIILIWAAILAVALYPAYAALSAILGHRPRVAALVITMLGLLVIVAPLAAIAISFAEGIQVVLARLNDRSLLISAPPDSIRSFPLIGERIYSVWSMASDNLEAVLQQIKPSLLQAGSKALGKIASIGADLLSFVVSVLVAGFLFGSGARLANSAQGFASRMGGDRGVGFLQLAAATIRNVARGVIGVALLQAFLCVLILSLFKVPAPGAIAFVVLILCIIQIGPALVLLPVIVWAWTSMEFGMAALFTILLIPLLIIDNVMKPILVARGLSTPTLVILLGVLGGTLSYGLIGLFLGPIVLSVFHSLLLIWMNTDTVGSEGLRLGASRLPNPT
>NZ_CP026526.1|WP_088194664.1|544330_544819_+|hypothetical-protein
MEDSLHPAAVAHLPPFITAPGQTDVLFNVMIVFVLLMIFVVGILYLRLHALPEHMAHGASKVQLQIVGVLALIALFTHNHLFWIAALLLAMVEFPNFSSPVESIARSLAKMADRHDGTDEPGTSAQPAAMPPRANESHASPPQWVPLEIEAVAGDDKAERRG
>NZ_CP026526.1|WP_088194663.1|544822_546052_+|HlyD-family-secretion-protein
MLEFLICSLLTIFPDYLVRRYVQGKRVGREINLYSMWFELRYGITACLILTISLITMIFYFHPSTSNVTAVFRTVTIMPESTGRVAEVYVDLNEKVSAGAPLFRLDDSEQQAALETARRRVAEIEAEAIVAQSELASADGLIAQAEGDYLQALNELETQVELNQRNPNIVARREIERLQVAVDGRDGARAASISNKRTLETKIASLLPAQKASAEAALTQAQVELDKTIVRAGTAGVVQQFALRAGDIVNPMIRSAGILVPEQRRIGLIAGFGQIEAQVMKAGMIAEATCIGKPFTIIPMVVTEVQDVIAAGQIRPTDQLVDAQQLASPGTLTAYLEPLYEGQFSGVPPGSSCIANAYTSNHDALHAPGISTPHWLFLHVVDAVGLVHAMILRLQALLLPVQTLVFKGH
>NZ_CP026526.1|WP_095926476.1|546162_547008_+|polyphosphate-kinase-2
MDKHTDDRKKNKAEDRKSAATEASETRSGGNYAKELARLQEEIAHLQAWVKKTGARIVIVFEGRDAAGKGGVIKRITERVSPRVFRVVALPAPTDREKTQIYMQRYIQQFPAAGEVVIFDRSWYNRPGVERVMGFCSEKKAKRFLEIAPRFEAAMIESGIVLLKYFLDVSEEEQDRRFRQRINDPLRQWKLSPMDVESYRRWWDYTRAYDEMIRMTDTDDAPWWIVPSDNKKQARVNCIAHILSSIPYEPVKFEEPDLGKRQKRPADFEGDTRRRTVPNLF
>NZ_CP026526.1|WP_095926477.1|547170_547848_-|VIT-family-protein
MSEKVPGNGGSKHLFYGVLNPVDRSNEVLFGLIMVMTFTNSLSTTDAGRADVRSMLVGAVGCNLAWGIIDAVMYFMSSMAERKLSERTVHRVRSADDVKAARGIVAEALPGIILPALSSEDLERIRRHLASLPDDEVRARPTTRDVISALGVFLLVFFCTFPVVFPFIVMTNALAAVKVSNAIATALLFLAGYTLGRHSGNPVGLALAMVAIGLILVALASALGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	709941-709998	0	1.0
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NC_018683	Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence	618048-618105	0	1.0
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	534472-534529	0	1.0
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NZ_CP019483	Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence	320258-320315	0	1.0
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	295298-295355	0	1.0
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	1180665-1180722	0	1.0
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	1086301-1086358	0	1.0
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	1186250-1186307	0	1.0
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	275823-275880	0	1.0
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	7342-7399	0	1.0
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	819905-819962	0	1.0
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	347456-347513	1	0.983
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NZ_CP019585	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence	403311-403368	1	0.983
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	347117-347174	1	0.983
NZ_CP026526_1	1.1\|534472\|58\|NZ_CP026526\|CRISPRCasFinder	534472-534529	58	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	373772-373829	1	0.983

1. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

2. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

3. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

4. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

5. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

6. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

7. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

8. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

9. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

10. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

11. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
**********************************************************

12. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgttcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************.***************************************

13. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NZ_CP019585 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgctcgcgccggtcaccgcggtcgccgatcagttccatcagg	Protospacer
******************************.***************************

14. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgttcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************.***************************************

15. spacer 1.1|534472|58|NZ_CP026526|CRISPRCasFinder matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 1, identity: 0.983

gatcaggtccatgagccgctcgcgccggtcgccgcggtcgccgatcagttccatcagg	CRISPR spacer
gatcaggtccatgagccgttcgcgccggtcgccgcggtcgccgatcagttccatcagg	Protospacer
******************.***************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

536103 : 608873

uncultured_virus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158528448.1\|536103_537163_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_015242499.1\|539191_539671_+	hypothetical protein	NA	NA	NA	NA
WP_010967341.1\|539728_540364_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010967342.1\|540478_540748_-	hypothetical protein	NA	NA	NA	NA
WP_095918790.1\|540888_542646_+	hypothetical protein	NA	NA	NA	NA
WP_088194909.1\|542688_543834_-	AI-2E family transporter	NA	NA	NA	NA
WP_088194664.1\|544330_544819_+	hypothetical protein	NA	NA	NA	NA
WP_088194663.1\|544822_546052_+	HlyD family secretion protein	NA	NA	NA	NA
WP_095926476.1\|546162_547008_+	polyphosphate kinase 2	NA	NA	NA	NA
WP_095926477.1\|547170_547848_-	VIT family protein	NA	NA	NA	NA
WP_095918798.1\|547844_548990_-	calcium/proton exchanger	NA	NA	NA	NA
WP_014528430.1\|549197_550139_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_095918800.1\|550168_551527_-	putrescine-ornithine antiporter	NA	NA	NA	NA
WP_095918802.1\|551554_553918_-	ornithine decarboxylase	NA	NA	NA	NA
WP_010967353.1\|553904_556175_-	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA
WP_095919191.1\|556380_557307_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_028010619.1\|557452_558778_-	amino acid permease	NA	NA	NA	NA
WP_010967356.1\|559291_559798_-	hypothetical protein	NA	NA	NA	NA
WP_010967357.1\|559988_560939_-	DUF2950 domain-containing protein	NA	NA	NA	NA
WP_158528665.1\|560959_562360_-	DUF3300 domain-containing protein	NA	NA	NA	NA
WP_014528439.1\|562581_562839_-	hypothetical protein	NA	NA	NA	NA
WP_158528666.1\|563211_564441_+	arginine deiminase	NA	NA	NA	NA
WP_158528667.1\|564477_565482_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_158528668.1\|565484_566459_+	carbamate kinase	NA	NA	NA	NA
WP_010967362.1\|566679_567150_+	hypothetical protein	NA	NA	NA	NA
WP_017264323.1\|567555_567990_+	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_127622296.1\|568469_569411_-	2-dehydro-3-deoxygalactonokinase	NA	NA	NA	NA
WP_095918810.1\|569506_570424_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_010967366.1\|570420_571590_+	mandelate racemase/muconate lactonizing enzyme family protein	Q6A202	Oenococcus_phage	1.8e-27	28.6
WP_095918812.1\|571622_572888_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_095918814.1\|572969_573875_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_003532212.1\|573886_574717_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_080573476.1\|575315_575807_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_003532203.1\|575808_576789_+	NAD(P)-dependent oxidoreductase	A0A2H4UUK0	Bodo_saltans_virus	3.7e-13	25.9
WP_003532201.1\|576767_578477_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003532200.1\|578534_579254_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_017268542.1\|580346_580790_+	VOC family protein	NA	NA	NA	NA
WP_010967204.1\|581161_582364_-\|transposase	IS256-like element ISRm3 family transposase	A0A218MNI5	uncultured_virus	1.0e-41	43.3
WP_014531801.1\|582686_583079_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_127664709.1\|583500_583701_+	hypothetical protein	I6S676	Salmonella_phage	1.1e-09	40.4
WP_028005946.1\|583780_584071_+	hypothetical protein	NA	NA	NA	NA
WP_158528669.1\|584040_584622_+	DUF2280 domain-containing protein	A0A125RNL6	Pseudomonas_phage	3.5e-11	61.8
WP_014989928.1\|584636_584909_+	hypothetical protein	NA	NA	NA	NA
WP_003535606.1\|585174_585378_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-07	51.7
WP_127637948.1\|587234_587537_-	hypothetical protein	NA	NA	NA	NA
WP_013845862.1\|588090_589728_-	chaperonin GroEL	A0A219YK78	uncultured_virus	6.7e-177	63.3
WP_010968824.1\|589803_590100_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	8.4e-22	58.7
WP_127637957.1\|590656_590758_+	hypothetical protein	NA	NA	NA	NA
WP_158528670.1\|591188_591638_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	2.5e-17	47.5
WP_011970797.1\|592806_593752_+\|transposase	IS630-like element ISRm2011-2 family transposase	S5VXX4	Leptospira_phage	1.0e-12	24.7
WP_127591500.1\|596871_597552_+	flavin reductase family protein	NA	NA	NA	NA
WP_017265675.1\|598031_598640_+	hypothetical protein	NA	NA	NA	NA
WP_014531047.1\|599009_599465_+\|transposase	transposase	NA	NA	NA	NA
WP_127517617.1\|599573_599801_-	hypothetical protein	NA	NA	NA	NA
WP_158528448.1\|599910_600971_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_158528671.1\|601036_602530_-	DUF1214 domain-containing protein	A0A1J0FA30	Only_Syngen_Nebraska_virus	3.4e-10	22.0
WP_028005888.1\|602681_603407_+	YafY family transcriptional regulator	A0A1B0RXM1	Streptococcus_phage	1.1e-11	30.8
WP_158528672.1\|603468_603783_-	hypothetical protein	NA	NA	NA	NA
WP_003537129.1\|607149_607401_-	WGR domain-containing protein	NA	NA	NA	NA
WP_003537131.1\|607835_608873_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

616959 : 684134

Bacillus_phage(14.29%)

integrase,transposase

attL 610363:610379|attR 674527:674543

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
610363:610379	attL	NA	NA	NA	NA
WP_158528673.1\|616959_618198_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7C7	Bacillus_phage	7.1e-06	29.6
WP_127637962.1\|618194_618821_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_127637961.1\|618817_619825_+\|integrase	site-specific integrase	A0A0K2CP59	Brevibacillus_phage	2.1e-11	25.3
WP_127624086.1\|619985_620180_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_127637951.1\|620254_621847_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-76	35.7
WP_003537746.1\|623105_624677_-	hypothetical protein	NA	NA	NA	NA
WP_003537747.1\|624886_625243_+	hypothetical protein	NA	NA	NA	NA
WP_127664684.1\|625513_626197_-	B3/4 domain-containing protein	NA	NA	NA	NA
WP_013845328.1\|626241_626865_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA
WP_127664708.1\|627017_628670_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.4e-80	38.9
WP_010975539.1\|628732_629086_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_127519359.1\|629082_629529_-\|transposase	transposase	NA	NA	NA	NA
WP_127664685.1\|629646_631104_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_014531088.1\|631186_631483_-	hypothetical protein	NA	NA	NA	NA
WP_158528674.1\|631539_631758_-	hypothetical protein	NA	NA	NA	NA
WP_003532639.1\|631886_632096_-	cold-shock protein	A0A218MMZ6	uncultured_virus	1.2e-09	52.8
WP_003532635.1\|632184_632373_-	hypothetical protein	NA	NA	NA	NA
WP_010967204.1\|633539_634742_+\|transposase	IS256-like element ISRm3 family transposase	A0A218MNI5	uncultured_virus	1.0e-41	43.3
WP_158528675.1\|634741_634987_+	hypothetical protein	NA	NA	NA	NA
WP_003532627.1\|635582_636860_-	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	6.6e-63	38.1
WP_127637751.1\|637492_638182_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_158000369.1\|638871_639291_-	hypothetical protein	NA	NA	NA	NA
WP_028005878.1\|641568_642771_+	cytochrome P450	NA	NA	NA	NA
WP_127637750.1\|642865_643816_+	cytochrome P450	NA	NA	NA	NA
WP_127637749.1\|644256_646206_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_003532611.1\|646233_646626_+	hypothetical protein	NA	NA	NA	NA
WP_158528676.1\|646689_648300_+	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA
WP_003532605.1\|648428_648758_+	hypothetical protein	NA	NA	NA	NA
WP_003532603.1\|648909_649662_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	7.8e-40	44.7
WP_003532601.1\|649989_650955_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA
WP_014531006.1\|651034_651325_-	mucR family transcriptional regulatory protein	A0A1P8VVG0	Erythrobacter_phage	1.4e-08	53.3
WP_088204075.1\|651987_652752_+	response regulator transcription factor	NA	NA	NA	NA
WP_003532595.1\|653929_654706_+	hypothetical protein	NA	NA	NA	NA
WP_158528736.1\|654857_655598_+	hypothetical protein	NA	NA	NA	NA
WP_014528047.1\|655658_656180_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_003532589.1\|656308_656899_+	NYN domain-containing protein	NA	NA	NA	NA
WP_013845262.1\|662462_663482_-	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA
WP_003532569.1\|663625_664102_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_127603798.1\|666270_667373_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.6e-12	29.5
WP_127519218.1\|667438_667597_-	thiazole biosynthesis family protein	NA	NA	NA	NA
WP_127637748.1\|667600_667798_-	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_003532558.1\|668867_669923_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_003532552.1\|670324_670891_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_003532548.1\|671646_671970_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	3.6e-18	47.5
WP_003532546.1\|672099_672252_-	hypothetical protein	A0A076GD42	Sinorhizobium_phage	1.3e-07	60.5
WP_158528677.1\|674729_675935_-	NAD-dependent formate dehydrogenase	A0A1B1IVB5	uncultured_Mediterranean_phage	8.8e-17	26.9
674527:674543	attR	NA	NA	NA	NA
WP_074935271.1\|676175_676433_+	hypothetical protein	NA	NA	NA	NA
WP_014528822.1\|676568_677072_+	cupin domain-containing protein	NA	NA	NA	NA
WP_033049384.1\|677433_678183_-	carbonic anhydrase	NA	NA	NA	NA
WP_107592733.1\|679276_680908_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA
WP_014530948.1\|681858_682098_+	hypothetical protein	NA	NA	NA	NA
WP_003537730.1\|682074_682509_-	helix-turn-helix transcriptional regulator	Q8W6G2	Sinorhizobium_phage	2.7e-24	47.4
WP_158528612.1\|682799_684134_+\|transposase	ISNCY-like element ISRm17 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

695895 : 745479

Stx2-converting_phage(18.18%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012477324.1\|695895_697404_+\|transposase	IS21-like element ISRm9 family transposase	NA	NA	NA	NA
WP_088194105.1\|697400_698213_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.5e-28	35.7
WP_003535608.1\|699587_699857_+	hypothetical protein	A0A291AUN9	Sinorhizobium_phage	3.1e-23	88.3
WP_003535607.1\|699853_700375_-	hypothetical protein	NA	NA	NA	NA
WP_003535606.1\|701030_701234_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-07	51.7
WP_086018104.1\|701494_701692_-	hypothetical protein	NA	NA	NA	NA
WP_127637937.1\|701754_702312_+	NUDIX hydrolase	A0A2H4IB87	Erwinia_phage	1.2e-08	33.6
WP_003535595.1\|702903_704322_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_107592309.1\|704410_704884_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_080564460.1\|704943_705228_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_003535591.1\|705224_705542_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_158528670.1\|705853_706303_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	2.5e-17	47.5
WP_003535579.1\|707113_707839_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_158528679.1\|709248_710127_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	5.0e-22	28.3
WP_158528680.1\|712886_713621_+	stachydrine N-demethylase Stc3	NA	NA	NA	NA
WP_127637896.1\|713687_714779_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_003537321.1\|714792_715137_+	hypothetical protein	NA	NA	NA	NA
WP_003537322.1\|715436_716288_-	pyridoxal kinase	NA	NA	NA	NA
WP_141630414.1\|716459_716849_+	hypothetical protein	NA	NA	NA	NA
WP_158528681.1\|717481_718444_-	DUF1611 domain-containing protein	NA	NA	NA	NA
WP_014531779.1\|718912_719209_-	hypothetical protein	NA	NA	NA	NA
WP_158528548.1\|719208_720846_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.2e-104	40.2
WP_012477217.1\|720894_721242_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.7e-26	57.1
WP_064744411.1\|721238_721544_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_003534853.1\|722575_723295_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_127637884.1\|723589_725014_+	dipeptidase	NA	NA	NA	NA
WP_127637885.1\|725164_726835_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003534858.1\|726834_727833_+	ABC transporter permease	NA	NA	NA	NA
WP_003534864.1\|727832_728786_+	ABC transporter permease	NA	NA	NA	NA
WP_050543931.1\|729784_730798_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.9e-15	30.3
WP_012477343.1\|732149_732887_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.1e-57	47.5
WP_086017922.1\|733726_733990_+	Y4bD/Y4pK family protein	NA	NA	NA	NA
WP_088199677.1\|734169_734619_+	helix-turn-helix domain containing protein	NA	NA	NA	NA
WP_088199678.1\|734641_734911_+	hypothetical protein	NA	NA	NA	NA
WP_088199679.1\|734900_736985_+	recombinase family protein	A0A0H3UZF2	Geobacillus_virus	9.2e-06	20.6
WP_127637865.1\|739678_740533_-	hypothetical protein	NA	NA	NA	NA
WP_127517366.1\|740890_741823_+	transcriptional regulator NodD2	NA	NA	NA	NA
WP_158528682.1\|742727_743408_+	flavin reductase	NA	NA	NA	NA
WP_100208908.1\|743611_743962_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_158528448.1\|744418_745479_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

757151 : 810649

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012477324.1\|757151_758660_+\|transposase	IS21-like element ISRm9 family transposase	NA	NA	NA	NA
WP_088194105.1\|758656_759469_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.5e-28	35.7
WP_010975539.1\|760566_760920_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_127519359.1\|760916_761363_-\|transposase	transposase	NA	NA	NA	NA
WP_127768540.1\|761559_762393_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_127768514.1\|762494_763328_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_003536951.1\|765123_765819_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_127637887.1\|766283_766886_+	amino acid synthesis family protein	NA	NA	NA	NA
WP_003536948.1\|766904_767738_+	alpha/beta fold hydrolase	A0A1D8EVD1	Mycobacterium_phage	3.3e-07	37.4
WP_127517893.1\|767734_768670_+	flavin reductase family protein	NA	NA	NA	NA
WP_003536944.1\|768666_769707_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_003536942.1\|769712_771176_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_003536940.1\|771181_771508_+	NIPSNAP family protein	NA	NA	NA	NA
WP_003536938.1\|771545_772556_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003536935.1\|772648_773524_+	ABC transporter permease	NA	NA	NA	NA
WP_003536933.1\|773525_774326_+	ABC transporter permease	NA	NA	NA	NA
WP_003536932.1\|774322_775402_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-30	39.3
WP_003536929.1\|775483_776956_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_158528683.1\|778206_778662_+\|transposase	transposase	NA	NA	NA	NA
WP_017268377.1\|778914_779556_+	hypothetical protein	NA	NA	NA	NA
WP_086022584.1\|779636_779864_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003532756.1\|780596_780803_-	putative nitrogen fixation protein NifT	NA	NA	NA	NA
WP_003532757.1\|780997_781192_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_127637836.1\|781223_782696_-	nitrogenase cofactor biosynthesis protein NifB	NA	NA	NA	NA
WP_127637835.1\|782913_784539_-	nif-specific transcriptional activator NifA	NA	NA	NA	NA
WP_003532763.1\|784761_785058_-	ferredoxin family protein	NA	NA	NA	NA
WP_003532765.1\|785070_786378_-	NAD(P)-binding protein	NA	NA	NA	NA
WP_003532766.1\|786389_787502_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_003532767.1\|787482_788361_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_003532770.1\|790585_791479_+	nitrogenase iron protein	NA	NA	NA	NA
WP_003532774.1\|791578_793081_+	nitrogenase molybdenum-iron protein alpha chain	NA	NA	NA	NA
WP_127637834.1\|793171_794713_+	nitrogenase molybdenum-iron protein subunit beta	NA	NA	NA	NA
WP_028005185.1\|794766_796197_+	nitrogenase iron-molybdenum cofactor biosynthesis protein NifE	NA	NA	NA	NA
WP_003532780.1\|796684_797182_+	nitrogen fixation protein NifX	NA	NA	NA	NA
WP_010967437.1\|797864_798182_+	ferredoxin III, nif-specific	NA	NA	NA	NA
WP_080573495.1\|798790_799081_+	hypothetical protein	NA	NA	NA	NA
WP_003532793.1\|799231_799477_+	protein SyrA	NA	NA	NA	NA
WP_013845338.1\|799803_800274_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_013845337.1\|800270_800627_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_127664647.1\|800675_802250_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.0e-73	35.5
WP_011970372.1\|802246_802810_+	UPF0149 family protein	NA	NA	NA	NA
WP_026031179.1\|802928_803870_-	transcriptional regulator NodD3	NA	NA	NA	NA
WP_086017713.1\|804328_804499_-	hypothetical protein	NA	NA	NA	NA
WP_010967444.1\|806121_806538_+	hypothetical protein	NA	NA	NA	NA
WP_158528684.1\|806595_807576_+	nod/exo genes transcriptional regulator SyrM	NA	NA	NA	NA
WP_127637891.1\|808200_808608_+\|transposase	transposase	NA	NA	NA	NA
WP_027990597.1\|808604_808955_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.5e-27	53.3
WP_107592140.1\|809014_810649_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.3e-95	41.4

DBSCAN-SWA_5

1166230 : 1196950

Leptospira_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011970797.1\|1166230_1167176_+\|transposase	IS630-like element ISRm2011-2 family transposase	S5VXX4	Leptospira_phage	1.0e-12	24.7
WP_074934945.1\|1167189_1168959_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_017266580.1\|1169078_1169381_-	hypothetical protein	NA	NA	NA	NA
WP_017269287.1\|1170307_1170763_-\|transposase	transposase	NA	NA	NA	NA
WP_158528448.1\|1170796_1171857_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_013845568.1\|1172242_1173640_+	endo-1,3-1,4-beta-glycanase EglC	A0A0F6SIL6	Sinorhizobium_phage	1.9e-18	30.0
WP_014528731.1\|1174873_1175260_-	ester cyclase	NA	NA	NA	NA
WP_158528716.1\|1175755_1179232_-	AAA family ATPase	NA	NA	NA	NA
WP_158528717.1\|1180800_1181412_+	hypothetical protein	NA	NA	NA	NA
WP_158528448.1\|1181412_1182473_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_010967836.1\|1182858_1183302_+	hypothetical protein	NA	NA	NA	NA
WP_010967837.1\|1183751_1184534_-	molecular chaperone	NA	NA	NA	NA
WP_010967838.1\|1184662_1186417_+	Kef family K(+) transporter	NA	NA	NA	NA
WP_107592359.1\|1186696_1187572_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010967840.1\|1187655_1188747_+	alkene reductase	NA	NA	NA	NA
WP_010967841.1\|1188743_1189721_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_013845576.1\|1190266_1191190_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014531451.1\|1191294_1191954_+	DUF924 family protein	A0A1V0SIY0	Klosneuvirus	6.5e-14	32.1
WP_013845578.1\|1192094_1192874_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010967855.1\|1192873_1193194_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_010967856.1\|1193242_1194196_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_127519359.1\|1194438_1194885_+\|transposase	transposase	NA	NA	NA	NA
WP_010975539.1\|1194881_1195235_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_127664708.1\|1195297_1196950_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.4e-80	38.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP026527

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP026527_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026527_1

657908-658025

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP026527_1

>merge|NZ_CP026527|1|657908-658025|CRISPRCasFinder
GATCGACCTCGCCGCCGCTGCCGCCGACACCGCCGCTGCCGCCGACGACGAGATCGATCGTGTGGCTGTGCTCTTTTTCGGCGGCCGTGCTGCTTCCGGCGCCGCCGACGCCGCCGCC

>NZ_CP026527|1|1|657908-658025|CRISPRCasFinder
GATCGACCTCGCCGCCGCTGCCGCCGA	CACCGCCGCTGCCGCCGACGACGAGATCGATCGTGTGGCTGTGCTCTTTTTCGGCGGCCGTGC
TGCTTCCGGCGCCGCCGACGCCGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026527.1\|WP_127545875.1\|662631_663783_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP026527.1\|WP_010975842.1\|644538_645162_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP026527.1\|WP_127545873.1\|671989_673012_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NZ_CP026527.1\|WP_127642913.1\|648438_650220_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP026527.1\|WP_010975829.1\|664641_665040_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026527.1\|WP_014527139.1\|663770_664553_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP026527.1\|WP_017271875.1\|653087_654329_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP026527.1\|WP_015243022.1\|665165_668504_-\|RTX-toxins-related-Ca2+-binding-protein	unknown	unknown	gnl\|CDD\|225483
NZ_CP026527.1\|WP_010975843.1\|643448_644339_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP026527.1\|WP_010975841.1\|645158_646136_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP026527.1\|WP_010975840.1\|646132_648358_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP026527.1\|WP_010975834.1\|654408_655326_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP026527.1\|WP_010975822.1\|674988_676263_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NZ_CP026527.1\|WP_074853281.1\|662148_662541_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026527.1\|WP_014527144.1\|673534_674992_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP026527.1\|WP_014527142.1\|670736_671900_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP026527.1\|WP_080591487.1\|650719_651262_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026527.1\|WP_080591489.1\|652136_653063_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026527.1\|WP_014527141.1\|668688_670731_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP026527.1\|WP_017266907.1\|651464_651974_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237

Protein	Function_ID	Function_description	E-value
NZ_CP026527.1\|WP_127545875.1\|662631_663783_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	2.74338e-170
NZ_CP026527.1\|WP_010975842.1\|644538_645162_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NZ_CP026527.1\|WP_127642913.1\|648438_650220_-\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	2.28588e-170
NZ_CP026527.1\|WP_014527139.1\|663770_664553_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NZ_CP026527.1\|WP_017271875.1\|653087_654329_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	4.40021e-67
NZ_CP026527.1\|WP_015243022.1\|665165_668504_-\|RTX-toxins-related-Ca2+-binding-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.62449e-24
NZ_CP026527.1\|WP_010975843.1\|643448_644339_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NZ_CP026527.1\|WP_010975841.1\|645158_646136_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NZ_CP026527.1\|WP_010975840.1\|646132_648358_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP026527.1\|WP_010975834.1\|654408_655326_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NZ_CP026527.1\|WP_014527144.1\|673534_674992_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP026527.1\|WP_010975822.1\|674988_676263_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.66756e-171
NZ_CP026527.1\|WP_014527142.1\|670736_671900_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP026527.1\|WP_127545873.1\|671989_673012_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	5.80532e-180
NZ_CP026527.1\|WP_014527141.1\|668688_670731_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP026527.1\|WP_017266907.1\|651464_651974_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.94853e-16

>NZ_CP026527.1|WP_010975834.1|654408_655326_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP026527.1|WP_017271875.1|653087_654329_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP026527.1|WP_080591489.1|652136_653063_-|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPGRPQRQWHPSSRLRRRRLPCRPRGRSFRRLRRPLPCRYREMTEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP026527.1|WP_017266907.1|651464_651974_-|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP026527.1|WP_080591487.1|650719_651262_-|hypothetical-protein
MVHPAKICLGTHDRVVQILLPSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGIRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIKTESATISVVDDHCRVNQMIKCLRKEQNQLDVP
>NZ_CP026527.1|WP_127642913.1|648438_650220_-|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERRQMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NZ_CP026527.1|WP_010975840.1|646132_648358_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGCPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP026527.1|WP_010975841.1|645158_646136_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP026527.1|WP_010975842.1|644538_645162_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NZ_CP026527.1|WP_010975843.1|643448_644339_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NZ_CP026527.1|WP_074853281.1|662148_662541_-|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPAEVFAGSIRTRRPSCVSVRAEHVAFFDRAGRRARRGGPGRRGVCGLQWKCNPDDRPGRLWIHMVGLLGRQWCR
>NZ_CP026527.1|WP_127545875.1|662631_663783_+|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLSGAACYA
>NZ_CP026527.1|WP_014527139.1|663770_664553_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP026527.1|WP_010975829.1|664641_665040_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP026527.1|WP_015243022.1|665165_668504_-|RTX-toxins-related-Ca2+-binding-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NZ_CP026527.1|WP_014527141.1|668688_670731_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP026527.1|WP_014527142.1|670736_671900_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP026527.1|WP_127545873.1|671989_673012_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVEGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP026527.1|WP_014527144.1|673534_674992_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVIIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NZ_CP026527.1|WP_010975822.1|674988_676263_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL

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Crispr_ID: NZ_CP026527_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026527_2

658115-658214

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP026527_2

>merge|NZ_CP026527|2|658115-658214|CRISPRCasFinder
TGCCGCCCGCACCGCCGCTGCCGCCGAAGCCGCCCCCGACGGTGATCCTGCCCGCCGCCTCGTCGGAACCGTCGCCGCCCTGCCCGCCACCGCCGCCGAT

>NZ_CP026527|2|2|658115-658214|CRISPRCasFinder
TGCCGCCCGCACCGCCGCTGCCGCCGA	AGCCGCCCCCGACGGTGATCCTGCCCGCCGCCTCGTCGGAACCGT
CGCCGCCCTGCCCGCCACCGCCGCCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026527.1\|WP_127545875.1\|662631_663783_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP026527.1\|WP_010975842.1\|644538_645162_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP026527.1\|WP_127545873.1\|671989_673012_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NZ_CP026527.1\|WP_127642913.1\|648438_650220_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP026527.1\|WP_010975829.1\|664641_665040_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026527.1\|WP_014527139.1\|663770_664553_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP026527.1\|WP_017271875.1\|653087_654329_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP026527.1\|WP_015243022.1\|665165_668504_-\|RTX-toxins-related-Ca2+-binding-protein	unknown	unknown	gnl\|CDD\|225483
NZ_CP026527.1\|WP_010975843.1\|643448_644339_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP026527.1\|WP_010975841.1\|645158_646136_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP026527.1\|WP_010975840.1\|646132_648358_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP026527.1\|WP_010975834.1\|654408_655326_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP026527.1\|WP_010975822.1\|674988_676263_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NZ_CP026527.1\|WP_074853281.1\|662148_662541_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026527.1\|WP_014527144.1\|673534_674992_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP026527.1\|WP_014527142.1\|670736_671900_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP026527.1\|WP_080591487.1\|650719_651262_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026527.1\|WP_080591489.1\|652136_653063_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026527.1\|WP_014527141.1\|668688_670731_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP026527.1\|WP_017266907.1\|651464_651974_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237

Protein	Function_ID	Function_description	E-value
NZ_CP026527.1\|WP_127545875.1\|662631_663783_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	2.74338e-170
NZ_CP026527.1\|WP_010975842.1\|644538_645162_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NZ_CP026527.1\|WP_127642913.1\|648438_650220_-\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	2.28588e-170
NZ_CP026527.1\|WP_014527139.1\|663770_664553_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NZ_CP026527.1\|WP_017271875.1\|653087_654329_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	4.40021e-67
NZ_CP026527.1\|WP_015243022.1\|665165_668504_-\|RTX-toxins-related-Ca2+-binding-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.62449e-24
NZ_CP026527.1\|WP_010975843.1\|643448_644339_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NZ_CP026527.1\|WP_010975841.1\|645158_646136_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NZ_CP026527.1\|WP_010975840.1\|646132_648358_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP026527.1\|WP_010975834.1\|654408_655326_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NZ_CP026527.1\|WP_014527144.1\|673534_674992_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP026527.1\|WP_010975822.1\|674988_676263_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.66756e-171
NZ_CP026527.1\|WP_014527142.1\|670736_671900_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP026527.1\|WP_127545873.1\|671989_673012_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	5.80532e-180
NZ_CP026527.1\|WP_014527141.1\|668688_670731_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP026527.1\|WP_017266907.1\|651464_651974_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.94853e-16

>NZ_CP026527.1|WP_010975834.1|654408_655326_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP026527.1|WP_017271875.1|653087_654329_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP026527.1|WP_080591489.1|652136_653063_-|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPGRPQRQWHPSSRLRRRRLPCRPRGRSFRRLRRPLPCRYREMTEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP026527.1|WP_017266907.1|651464_651974_-|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP026527.1|WP_080591487.1|650719_651262_-|hypothetical-protein
MVHPAKICLGTHDRVVQILLPSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGIRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIKTESATISVVDDHCRVNQMIKCLRKEQNQLDVP
>NZ_CP026527.1|WP_127642913.1|648438_650220_-|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERRQMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NZ_CP026527.1|WP_010975840.1|646132_648358_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGCPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP026527.1|WP_010975841.1|645158_646136_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP026527.1|WP_010975842.1|644538_645162_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NZ_CP026527.1|WP_010975843.1|643448_644339_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NZ_CP026527.1|WP_074853281.1|662148_662541_-|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPAEVFAGSIRTRRPSCVSVRAEHVAFFDRAGRRARRGGPGRRGVCGLQWKCNPDDRPGRLWIHMVGLLGRQWCR
>NZ_CP026527.1|WP_127545875.1|662631_663783_+|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLSGAACYA
>NZ_CP026527.1|WP_014527139.1|663770_664553_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP026527.1|WP_010975829.1|664641_665040_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP026527.1|WP_015243022.1|665165_668504_-|RTX-toxins-related-Ca2+-binding-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NZ_CP026527.1|WP_014527141.1|668688_670731_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP026527.1|WP_014527142.1|670736_671900_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP026527.1|WP_127545873.1|671989_673012_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVEGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP026527.1|WP_014527144.1|673534_674992_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVIIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NZ_CP026527.1|WP_010975822.1|674988_676263_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL

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Crispr_ID: NZ_CP026527_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026527_3

658289-658408

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP026527_3

>merge|NZ_CP026527|3|658289-658408|CRISPRCasFinder
TGCCGACCGCGCCGCCATTGCCGCCCGCACCGCCGCTGCCGCCGACACCGACGGTGATGTTGGCCGTCGCCTGGCTGCCGGACGCGGTGGAGGTGCCGCCCGCACCGCCGCCGCCGCCGA

>NZ_CP026527|3|3|658289-658408|CRISPRCasFinder
TGCCGACCGCGCCGCCATTGCCGCCCG	CACCGCCGCTGCCGCCGACACCGACGGTGATGTTGGCCGTCGCCTGGCTGCCGGACGCGGTGGAGG
TGCCGCCCGCACCGCCGCCGCCGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026527.1\|WP_127545875.1\|662631_663783_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP026527.1\|WP_010975842.1\|644538_645162_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP026527.1\|WP_127545873.1\|671989_673012_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NZ_CP026527.1\|WP_127642913.1\|648438_650220_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|179625
NZ_CP026527.1\|WP_010975829.1\|664641_665040_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026527.1\|WP_014527139.1\|663770_664553_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP026527.1\|WP_017271875.1\|653087_654329_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP026527.1\|WP_015243022.1\|665165_668504_-\|RTX-toxins-related-Ca2+-binding-protein	unknown	unknown	gnl\|CDD\|225483
NZ_CP026527.1\|WP_010975843.1\|643448_644339_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP026527.1\|WP_010975841.1\|645158_646136_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP026527.1\|WP_010975840.1\|646132_648358_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP026527.1\|WP_010975834.1\|654408_655326_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP026527.1\|WP_010975822.1\|674988_676263_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NZ_CP026527.1\|WP_074853281.1\|662148_662541_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026527.1\|WP_014527144.1\|673534_674992_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NZ_CP026527.1\|WP_014527142.1\|670736_671900_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NZ_CP026527.1\|WP_080591487.1\|650719_651262_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026527.1\|WP_080591489.1\|652136_653063_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026527.1\|WP_014527141.1\|668688_670731_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NZ_CP026527.1\|WP_017266907.1\|651464_651974_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237

Protein	Function_ID	Function_description	E-value
NZ_CP026527.1\|WP_127545875.1\|662631_663783_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	2.74338e-170
NZ_CP026527.1\|WP_010975842.1\|644538_645162_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NZ_CP026527.1\|WP_127642913.1\|648438_650220_-\|potassium-transporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	2.28588e-170
NZ_CP026527.1\|WP_014527139.1\|663770_664553_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NZ_CP026527.1\|WP_017271875.1\|653087_654329_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	4.40021e-67
NZ_CP026527.1\|WP_015243022.1\|665165_668504_-\|RTX-toxins-related-Ca2+-binding-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.62449e-24
NZ_CP026527.1\|WP_010975843.1\|643448_644339_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NZ_CP026527.1\|WP_010975841.1\|645158_646136_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NZ_CP026527.1\|WP_010975840.1\|646132_648358_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP026527.1\|WP_010975834.1\|654408_655326_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NZ_CP026527.1\|WP_014527144.1\|673534_674992_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NZ_CP026527.1\|WP_010975822.1\|674988_676263_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.66756e-171
NZ_CP026527.1\|WP_014527142.1\|670736_671900_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP026527.1\|WP_127545873.1\|671989_673012_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	5.80532e-180
NZ_CP026527.1\|WP_014527141.1\|668688_670731_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP026527.1\|WP_017266907.1\|651464_651974_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.94853e-16

>NZ_CP026527.1|WP_010975834.1|654408_655326_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NZ_CP026527.1|WP_017271875.1|653087_654329_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NZ_CP026527.1|WP_080591489.1|652136_653063_-|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPGRPQRQWHPSSRLRRRRLPCRPRGRSFRRLRRPLPCRYREMTEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NZ_CP026527.1|WP_017266907.1|651464_651974_-|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGEPFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKGFGKAMLRSYVLNVVPSIFPQDCKCFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NZ_CP026527.1|WP_080591487.1|650719_651262_-|hypothetical-protein
MVHPAKICLGTHDRVVQILLPSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGIRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIKTESATISVVDDHCRVNQMIKCLRKEQNQLDVP
>NZ_CP026527.1|WP_127642913.1|648438_650220_-|potassium-transporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERRQMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NZ_CP026527.1|WP_010975840.1|646132_648358_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGCPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NZ_CP026527.1|WP_010975841.1|645158_646136_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NZ_CP026527.1|WP_010975842.1|644538_645162_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NZ_CP026527.1|WP_010975843.1|643448_644339_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NZ_CP026527.1|WP_074853281.1|662148_662541_-|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPAEVFAGSIRTRRPSCVSVRAEHVAFFDRAGRRARRGGPGRRGVCGLQWKCNPDDRPGRLWIHMVGLLGRQWCR
>NZ_CP026527.1|WP_127545875.1|662631_663783_+|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLSGAACYA
>NZ_CP026527.1|WP_014527139.1|663770_664553_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NZ_CP026527.1|WP_010975829.1|664641_665040_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NZ_CP026527.1|WP_015243022.1|665165_668504_-|RTX-toxins-related-Ca2+-binding-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NZ_CP026527.1|WP_014527141.1|668688_670731_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NZ_CP026527.1|WP_014527142.1|670736_671900_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NZ_CP026527.1|WP_127545873.1|671989_673012_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVEGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NZ_CP026527.1|WP_014527144.1|673534_674992_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVIIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NZ_CP026527.1|WP_010975822.1|674988_676263_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054100-1054144	0	1.0
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656013-656057	0	1.0
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772894-772938	0	1.0
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292351-292395	0	1.0
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225853-1225897	0	1.0
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998536-998580	0	1.0
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651469-651513	0	1.0
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636463-636507	0	1.0
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233510-233554	0	1.0
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644528-644572	0	1.0
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558514-558558	0	1.0
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658142-658186	0	1.0
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085274-1085318	1	0.978
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151496-1151540	1	0.978
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373266-373310	1	0.978
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085279-1085323	1	0.978
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634337-634381	1	0.978
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302265-1302309	1	0.978
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895761-895805	1	0.978
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423128-1423172	1	0.978
NZ_CP026527_2	2.1\|658142\|45\|NZ_CP026527\|CRISPRCasFinder	658142-658186	45	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795069-795113	1	0.978
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651262-651324	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085463-1085525	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636256-636318	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151685-1151747	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233303-233365	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644321-644383	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634130-634192	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302058-1302120	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895554-895616	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	773083-773145	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558307-558369	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292540-292602	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1422921-1422983	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373455-373517	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	794862-794924	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	657935-657997	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1226042-1226104	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998725-998787	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085468-1085530	3	0.952
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054289-1054351	4	0.937
NZ_CP026527_1	1.1\|657935\|63\|NZ_CP026527\|CRISPRCasFinder	657935-657997	63	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656199-656261	4	0.937
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651643-651708	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085079-1085144	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1053905-1053970	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636637-636702	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151301-1151366	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233684-233749	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644702-644767	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634511-634576	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	655818-655883	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302439-1302504	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895935-896000	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772699-772764	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558688-558753	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292156-292221	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423302-1423367	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373071-373136	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795243-795308	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658316-658381	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225658-1225723	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998341-998406	6	0.909
NZ_CP026527_3	3.1\|658316\|66\|NZ_CP026527\|CRISPRCasFinder	658316-658381	66	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085084-1085149	6	0.909

1. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

2. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

3. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

4. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

5. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

6. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

7. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

8. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

9. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

10. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

11. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

12. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

13. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

14. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

15. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

16. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

17. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

18. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

19. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

20. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

21. spacer 2.1|658142|45|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

22. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

23. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

24. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

25. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

26. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

27. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

28. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

29. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

30. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

31. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

32. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

33. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

34. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

35. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

36. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

37. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

38. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

39. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

40. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

41. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 4, identity: 0.937

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtactctttttcggcggccg	Protospacer
******************************************.*****************

42. spacer 1.1|657935|63|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.937

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtactctttttcggcggccg	Protospacer
******************************************.*****************

43. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

44. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

45. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

46. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

47. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

48. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

49. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

50. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

51. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

52. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

53. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

54. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

55. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

56. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

57. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

58. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

59. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

60. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

61. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

62. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

63. spacer 3.1|658316|66|NZ_CP026527|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

268875 : 277721

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014527787.1\|268875_270153_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	2.2e-74	43.0
WP_010976193.1\|270156_270933_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_014527788.1\|270944_271850_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.9e-70	49.3
WP_010976191.1\|271992_272997_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.2e-13	26.8
WP_127514940.1\|273013_273691_+	aldolase	A0A077SK32	Escherichia_phage	1.3e-49	49.8
WP_015008142.1\|273998_274763_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_127514938.1\|274807_275791_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010976186.1\|275792_276569_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.9e-05	28.2
WP_127514936.1\|276653_277721_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G3M9Y6	Bacillus_virus	4.5e-25	33.0

DBSCAN-SWA_2

410015 : 419709

Sinorhizobium_phage(77.78%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015456703.1\|410015_410219_-	hypothetical protein	A0A291AUP5	Sinorhizobium_phage	1.7e-13	64.0
WP_010976047.1\|410312_410531_-	hypothetical protein	NA	NA	NA	NA
WP_010976046.1\|410561_410798_+	hypothetical protein	NA	NA	NA	NA
WP_010976045.1\|411062_411509_-	hypothetical protein	A0A291AUP2	Sinorhizobium_phage	2.1e-24	52.8
WP_010976044.1\|411564_412101_-	hypothetical protein	NA	NA	NA	NA
WP_010976043.1\|412127_413180_+	hypothetical protein	A0A076G6J8	Sinorhizobium_phage	1.8e-106	88.0
WP_010976042.1\|413064_413307_+	hypothetical protein	J7F8X5	Agrobacterium_phage	1.1e-16	61.8
WP_014529432.1\|413361_413727_+	hypothetical protein	A0A076GD39	Sinorhizobium_phage	2.4e-42	72.5
WP_010976040.1\|414643_414904_+	hypothetical protein	A0A291AUN9	Sinorhizobium_phage	3.2e-17	84.0
WP_010976039.1\|415009_416623_-	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	3.1e-142	51.7
WP_010976038.1\|416824_417835_+	hypothetical protein	NA	NA	NA	NA
WP_010976037.1\|417852_418038_-	hypothetical protein	A0A291AUP5	Sinorhizobium_phage	6.2e-15	65.3
WP_015456698.1\|418030_418483_-	hypothetical protein	NA	NA	NA	NA
WP_010976035.1\|418614_419709_+	ATP-dependent DNA ligase	A0A076GD42	Sinorhizobium_phage	5.5e-119	65.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP026529

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

40301 : 107381

Stx2-converting_phage(18.75%)

transposase,integrase

attL 55152:55169|attR 105279:105296

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158528829.1\|40301_41894_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	2.1e-58	33.1
WP_015061473.1\|41948_42302_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.2e-20	47.3
WP_015061474.1\|42282_42741_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.5e-06	48.6
WP_088201479.1\|42853_44677_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.3e-32	31.3
WP_127632196.1\|45081_45867_-	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_127632197.1\|46093_46888_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA
WP_158528830.1\|46997_47939_+	acetaldehyde dehydrogenase (acetylating)	G9E526	Ostreococcus_lucimarinus_virus	8.6e-36	35.5
WP_127632199.1\|47938_48967_+	4-hydroxy-2-oxovalerate aldolase	E5EQ69	Micromonas_sp._RCC1109_virus	8.2e-40	31.0
WP_127632200.1\|49022_50396_+	MHS family MFS transporter	Q6JIH2	Burkholderia_virus	4.6e-46	31.3
WP_158528831.1\|50406_52197_+	2,4-dichlorophenol 6-monooxygenase	NA	NA	NA	NA
WP_158528832.1\|52601_53327_-	HTH domain-containing protein	A0A1B0RXM1	Streptococcus_phage	8.7e-12	28.1
WP_158528833.1\|53481_54960_+	DUF1214 domain-containing protein	A0A1J0FA30	Only_Syngen_Nebraska_virus	1.6e-07	21.8
55152:55169	attL	NA	NA	NA	NA
WP_011970372.1\|55312_55876_-	UPF0149 family protein	NA	NA	NA	NA
WP_158528900.1\|58106_59414_+	DUF1214 domain-containing protein	M1IA53	Paramecium_bursaria_Chlorella_virus	1.4e-39	31.8
WP_127635058.1\|59565_61197_+	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	5.5e-147	54.6
WP_158528834.1\|61240_62236_-	phenol degradation protein meta	NA	NA	NA	NA
WP_158528901.1\|62510_62741_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_158528835.1\|62747_63071_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_127635060.1\|64654_65050_-	response regulator	NA	NA	NA	NA
WP_158528836.1\|65667_66867_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_086017922.1\|68344_68608_+	Y4bD/Y4pK family protein	NA	NA	NA	NA
WP_088199677.1\|68787_69237_+	helix-turn-helix domain containing protein	NA	NA	NA	NA
WP_088199678.1\|69259_69529_+	hypothetical protein	NA	NA	NA	NA
WP_088199679.1\|69518_71603_+	recombinase family protein	A0A0H3UZF2	Geobacillus_virus	9.2e-06	20.6
WP_158528837.1\|73232_74471_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_088203654.1\|74475_75537_+	stachydrine N-demethylase reductase subunit Stc4	NA	NA	NA	NA
WP_158528838.1\|75831_76512_+	flavin reductase	NA	NA	NA	NA
WP_127515929.1\|77339_78023_-	B3/4 domain-containing protein	NA	NA	NA	NA
WP_158528839.1\|78067_78691_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA
WP_158528840.1\|78767_80225_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_010969296.1\|80873_82070_-\|transposase	IS256-like element ISRm5 family transposase	A0A0K2CZ57	Paenibacillus_phage	5.9e-74	43.6
WP_127591194.1\|82151_82718_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_080589971.1\|83051_83339_+	hypothetical protein	NA	NA	NA	NA
WP_033049347.1\|83676_84384_+	type IV secretion system lytic transglycosylase VirB1	NA	NA	NA	NA
WP_014528518.1\|84397_84760_+	pilin major subunit VirB2	NA	NA	NA	NA
WP_003537077.1\|84756_85083_+	type IV secretion system protein VirB3	NA	NA	NA	NA
WP_127610437.1\|85082_87452_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_003537081.1\|87465_88149_+	pilin minor subunit VirB5	NA	NA	NA	NA
WP_003537089.1\|88229_89117_+	type IV secretion system protein	NA	NA	NA	NA
WP_003537091.1\|89149_89317_+	type IV secretion system lipoprotein VirB7	NA	NA	NA	NA
WP_003537093.1\|89303_90017_+	type IV secretion system protein VirB8	NA	NA	NA	NA
WP_003537095.1\|90013_90895_+	P-type conjugative transfer protein VirB9	NA	NA	NA	NA
WP_033049349.1\|90891_92010_+	type IV secretion system protein VirB10	NA	NA	NA	NA
WP_003537101.1\|92049_93090_+	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
WP_064744411.1\|93999_94305_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012477217.1\|94301_94649_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.7e-26	57.1
WP_014531779.1\|96333_96630_+	hypothetical protein	NA	NA	NA	NA
WP_003537873.1\|97117_97843_+	response regulator	W8CYM9	Bacillus_phage	1.1e-17	30.7
WP_158528448.1\|98185_99246_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_127591188.1\|99382_101074_-	type IV secretion system ATPase VirD4	NA	NA	NA	NA
WP_033049395.1\|101731_102619_-	hypothetical protein	NA	NA	NA	NA
WP_028011680.1\|103656_104262_+	hypothetical protein	NA	NA	NA	NA
WP_014531047.1\|104612_105068_+\|transposase	transposase	NA	NA	NA	NA
WP_127517617.1\|105176_105404_-	hypothetical protein	NA	NA	NA	NA
105279:105296	attR	NA	NA	NA	NA
WP_010967204.1\|106178_107381_+\|transposase	IS256-like element ISRm3 family transposase	A0A218MNI5	uncultured_virus	1.0e-41	43.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage