CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP045956	Salmonella enterica subsp. enterica serovar Enteritidis strain AUSMDU00010527 chromosome, complete genome	2 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	0	8	4	0
NZ_CP045957	Salmonella enterica subsp. enterica serovar Enteritidis strain AUSMDU00010527 plasmid pAUSMDU00010527, complete sequence	0 crisprs	NA	0	0	0	0

1. NZ_CP045956

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045956_1

• CRISPR_ID: NZ_CP045956_1
• CRISPR_location: 940128-940827
• CRISPR_type: TypeI-E
• Repeat_type: I-E
• Spacer_info: 11 spacers
• Cas_protein_info: cas3,cas8e,cse2gr11,cas7

Consensus repeat of NZ_CP045956_1

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

spacers of NZ_CP045956_1

>1.1|940157|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT
GGCCCCCATGTCGCTGGCCGTGGATGTGTCGG
>1.2|940218|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT
GCGTATATATCGTCTTTTCCAGTCGCCTGCAC
>1.3|940279|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT
GCGATGTGTCGGAATATGCGGGCTGATTTTCG
>1.4|940340|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT
GTGGTTAGACGTGACACAGGGTCTGCCGTGGT
>1.5|940401|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT
GACAACATCAACACGCAGATTAGCCAGCTTGA
>1.6|940462|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT
AGAGCATCACTTTGCGCGGTTTCAGTTGTCGG
>1.7|940523|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT
GATTCATAATCCGTATGCCTTTTTTAAATAAA
>1.8|940584|32|NZ_CP045956|CRISPRCasFinder,CRT
GAGATCACACCCACAGTCTCCAACTTCATTAA
>1.9|940645|32|NZ_CP045956|CRISPRCasFinder,CRT
AATTCCTCGATAGCGATCTGCGCCAGGTTGAA
>1.10|940706|32|NZ_CP045956|CRISPRCasFinder,CRT
GAGCATTGCGTTGCCTCTTATGCGTCGTGGTG
>1.11|940767|32|NZ_CP045956|CRISPRCasFinder,CRT
TGCGCCAACGACTGGAATTTTTGCGTGTAGCC

CRISPR arrays and Neighbor proteins around NZ_CP045956_1

CRISPR arrays

The CRISPR arrays of NZ_CP045956_1

>merge|NZ_CP045956|1|940128-940827|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGGCCCCCATGTCGCTGGCCGTGGATGTGTCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTATATATCGTCTTTTCCAGTCGCCTGCACGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGATGTGTCGGAATATGCGGGCTGATTTTCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGGTTAGACGTGACACAGGGTCTGCCGTGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGACAACATCAACACGCAGATTAGCCAGCTTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGAGCATCACTTTGCGCGGTTTCAGTTGTCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTCATAATCCGTATGCCTTTTTTAAATAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGATCACACCCACAGTCTCCAACTTCATTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTCCTCGATAGCGATCTGCGCCAGGTTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCATTGCGTTGCCTCTTATGCGTCGTGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCGCCAACGACTGGAATTTTTGCGTGTAGCCGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP045956|1|1|940128-940583|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCCCCCATGTCGCTGGCCGTGGATGTGTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTATATATCGTCTTTTCCAGTCGCCTGCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTGTCGGAATATGCGGGCTGATTTTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGGTTAGACGTGACACAGGGTCTGCCGTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACAACATCAACACGCAGATTAGCCAGCTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAGCATCACTTTGCGCGGTTTCAGTTGTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTCATAATCCGTATGCCTTTTTTAAATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP045956|1|1|940128-940827|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCCCCCATGTCGCTGGCCGTGGATGTGTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTATATATCGTCTTTTCCAGTCGCCTGCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTGTCGGAATATGCGGGCTGATTTTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGGTTAGACGTGACACAGGGTCTGCCGTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACAACATCAACACGCAGATTAGCCAGCTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAGCATCACTTTGCGCGGTTTCAGTTGTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTCATAATCCGTATGCCTTTTTTAAATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGATCACACCCACAGTCTCCAACTTCATTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCCTCGATAGCGATCTGCGCCAGGTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCATTGCGTTGCCTCTTATGCGTCGTGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCGCCAACGACTGGAATTTTTGCGTGTAGCC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP045956|1|1|940128-940827|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCCCCCATGTCGCTGGCCGTGGATGTGTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTATATATCGTCTTTTCCAGTCGCCTGCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTGTCGGAATATGCGGGCTGATTTTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGGTTAGACGTGACACAGGGTCTGCCGTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACAACATCAACACGCAGATTAGCCAGCTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAGCATCACTTTGCGCGGTTTCAGTTGTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTCATAATCCGTATGCCTTTTTTAAATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGATCACACCCACAGTCTCCAACTTCATTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCCTCGATAGCGATCTGCGCCAGGTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCATTGCGTTGCCTCTTATGCGTCGTGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCGCCAACGACTGGAATTTTTGCGTGTAGCC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045956.1|WP_080083321.1|944405_946118_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl|CDD|237402
NZ_CP045956.1|WP_000842512.1|933784_934372_-|fimbrial-protein	unknown	unknown	gnl|CDD|185169
NZ_CP045956.1|WP_023250014.1|940924_941722_+|MBL-fold-metallo-hydrolase	unknown	unknown	gnl|CDD|224158
NZ_CP045956.1|WP_154080134.1|951212_952769_+|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl|CDD|274192
NZ_CP045956.1|WP_000210863.1|936005_937643_+|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl|CDD|235437
NZ_CP045956.1|WP_000080403.1|946193_946928_+|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl|CDD|234997
NZ_CP045956.1|WP_154080132.1|939159_939831_+|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl|CDD|275126
NZ_CP045956.1|WP_000210454.1|934977_935778_+|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl|CDD|236569
NZ_CP045956.1|WP_000108313.1|941808_942171_-|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl|CDD|238264
NZ_CP045956.1|WP_154080133.1|942606_944406_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl|CDD|182862
NZ_CP045956.1|WP_079951085.1|947140_948094_-|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl|CDD|185277
NZ_CP045956.1|WP_000832394.1|929208_929679_-|fimbrial-protein	unknown	unknown	gnl|CDD|185179
NZ_CP045956.1|WP_154080130.1|928675_929212_-|fimbrial-protein	unknown	unknown	gnl|CDD|185168
NZ_CP045956.1|WP_154080131.1|931005_933705_-|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl|CDD|185176
NZ_CP045956.1|WP_000206413.1|953339_954398_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl|CDD|273843
NZ_CP045956.1|WP_000117944.1|952765_953326_+|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl|CDD|187862
NZ_CP045956.1|WP_000036734.1|937725_939024_+|phosphopyruvate-hydratase	unknown	unknown	gnl|CDD|234617
NZ_CP045956.1|WP_001044459.1|930219_930993_-|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl|CDD|185177
NZ_CP045956.1|WP_079802181.1|948537_951201_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NZ_CP045956.1|WP_000178267.1|929693_930200_-|fimbrial-protein	unknown	unknown	gnl|CDD|185178

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP045956.1|WP_079802181.1|948537_951201_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	2.2e-182	602.8	0.0
NZ_CP045956.1|WP_000206413.1|953339_954398_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	5.6e-126	415.6	2.7
NZ_CP045956.1|WP_000117944.1|952765_953326_+|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	3.4e-37	122.5	2.2
NZ_CP045956.1|WP_154080134.1|951212_952769_+|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	9.2e-169	557.0	0.8

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP045956.1|WP_080083321.1|944405_946118_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl|CDD|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP045956.1|WP_000842512.1|933784_934372_-|fimbrial-protein	gnl|CDD|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP045956.1|WP_023250014.1|940924_941722_+|MBL-fold-metallo-hydrolase	gnl|CDD|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	9.45281e-101
NZ_CP045956.1|WP_154080134.1|951212_952769_+|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl|CDD|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP045956.1|WP_000210863.1|936005_937643_+|CTP-synthase-(glutamine-hydrolyzing)	gnl|CDD|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP045956.1|WP_000080403.1|946193_946928_+|phosphoadenosine-phosphosulfate-reductase	gnl|CDD|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47943e-138
NZ_CP045956.1|WP_154080132.1|939159_939831_+|7-carboxy-7-deazaguanine-synthase-QueE	gnl|CDD|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.97038e-154
NZ_CP045956.1|WP_000210454.1|934977_935778_+|nucleoside-triphosphate-pyrophosphohydrolase	gnl|CDD|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.36327e-159
NZ_CP045956.1|WP_000108313.1|941808_942171_-|6-carboxytetrahydropterin-synthase-QueD	gnl|CDD|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP045956.1|WP_154080133.1|942606_944406_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl|CDD|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP045956.1|WP_079951085.1|947140_948094_-|SPI-1-type-III-secretion-system-effector-SopD	gnl|CDD|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP045956.1|WP_000832394.1|929208_929679_-|fimbrial-protein	gnl|CDD|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	9.26954e-100
NZ_CP045956.1|WP_154080130.1|928675_929212_-|fimbrial-protein	gnl|CDD|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	8.85327e-123
NZ_CP045956.1|WP_154080131.1|931005_933705_-|fimbrial-biogenesis-outer-membrane-usher-protein	gnl|CDD|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP045956.1|WP_000206413.1|953339_954398_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl|CDD|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.52672e-140
NZ_CP045956.1|WP_000117944.1|952765_953326_+|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl|CDD|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	9.5399e-34
NZ_CP045956.1|WP_000036734.1|937725_939024_+|phosphopyruvate-hydratase	gnl|CDD|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP045956.1|WP_001044459.1|930219_930993_-|fimbria/pilus-periplasmic-chaperone	gnl|CDD|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP045956.1|WP_079802181.1|948537_951201_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP045956.1|WP_000178267.1|929693_930200_-|fimbrial-protein	gnl|CDD|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	7.03659e-105

Protein sequences

>NZ_CP045956.1|WP_154080132.1|939159_939831_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPCVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP045956.1|WP_000036734.1|937725_939024_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP045956.1|WP_000210863.1|936005_937643_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP045956.1|WP_000210454.1|934977_935778_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP045956.1|WP_000842512.1|933784_934372_-|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP045956.1|WP_154080131.1|931005_933705_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKLALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPSTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP045956.1|WP_001044459.1|930219_930993_-|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP045956.1|WP_000178267.1|929693_930200_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVAGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP045956.1|WP_000832394.1|929208_929679_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWPLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP045956.1|WP_154080130.1|928675_929212_-|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGIEDSTLPGLLALEPSSEASGFAIGVETVAQQRLDINAVQGTAFMLKEGITTINLQARLQKYAGEDVMPGEFSGSATVSFEYQ
>NZ_CP045956.1|WP_023250014.1|940924_941722_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGTGADKSLKARPGLSLLVEDESTSVLFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGKNFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYLSTKGLVIITGCGHRGIANIVRHCQNITGIKQIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP045956.1|WP_000108313.1|941808_942171_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP045956.1|WP_154080133.1|942606_944406_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNLRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPDLVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIIENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP045956.1|WP_080083321.1|944405_946118_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP045956.1|WP_000080403.1|946193_946928_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP045956.1|WP_079951085.1|947140_948094_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNTQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP045956.1|WP_079802181.1|948537_951201_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP045956.1|WP_154080134.1|951212_952769_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPARFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP045956.1|WP_000117944.1|952765_953326_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP045956.1|WP_000206413.1|953339_954398_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVEKIANCFGKVKAEKKPKDELTNAETEQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALRENMNAVYAQETAFKDFNVMNQQGSMKDVLDFICA

Crispr_ID: NZ_CP045956_2

• CRISPR_ID: NZ_CP045956_2
• CRISPR_location: 957094-957610
• CRISPR_type: TypeI-E
• Repeat_type: I-E
• Spacer_info: 8 spacers
• Cas_protein_info: cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

Consensus repeat of NZ_CP045956_2

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

spacers of NZ_CP045956_2

>2.1|957123|32|NZ_CP045956|CRISPRCasFinder,CRT
ACGGGTTTGATATCAGCCTCACCGGATTTGGA
>2.2|957184|32|NZ_CP045956|CRISPRCasFinder,CRT
AGAGCGAGCACGTCCGCCGTAAAATTGCCATG
>2.3|957245|32|NZ_CP045956|CRISPRCasFinder,CRT
AATATATGGCGCTCACGCGCATGAGCATTCTC
>2.4|957306|32|NZ_CP045956|CRISPRCasFinder,CRT
GCGGTTTTTCTAATGCTGGCGTGGTATTAGCT
>2.5|957367|32|NZ_CP045956|CRISPRCasFinder,CRT
GAACGACAATAAAGCATGTGGCAATTGCGCCG
>2.6|957428|32|NZ_CP045956|CRISPRCasFinder,CRT
CAGGGCAAATTCATCCGCCGCTGACCACTGGT
>2.7|957489|32|NZ_CP045956|CRISPRCasFinder,CRT
GACGCTTACATCTCACCGAGAGATTTTGAGGC
>2.8|957550|32|NZ_CP045956|CRISPRCasFinder,CRT
GTTGGGTTGCATAGATGACACGCTTATAAATA

CRISPR arrays and Neighbor proteins around NZ_CP045956_2

CRISPR arrays

The CRISPR arrays of NZ_CP045956_2

>merge|NZ_CP045956|2|957094-957610|CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGACGGGTTTGATATCAGCCTCACCGGATTTGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGAGCGAGCACGTCCGCCGTAAAATTGCCATGGTGTTCCCCGCGCCAGCGGGGATAAACCGAATATATGGCGCTCACGCGCATGAGCATTCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGTTTTTCTAATGCTGGCGTGGTATTAGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGAACGACAATAAAGCATGTGGCAATTGCGCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGGCAAATTCATCCGCCGCTGACCACTGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGACGCTTACATCTCACCGAGAGATTTTGAGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTGGGTTGCATAGATGACACGCTTATAAATAGTGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP045956|2|2|957094-957610|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGGTTTGATATCAGCCTCACCGGATTTGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAGCGAGCACGTCCGCCGTAAAATTGCCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATATGGCGCTCACGCGCATGAGCATTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGTTTTTCTAATGCTGGCGTGGTATTAGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACGACAATAAAGCATGTGGCAATTGCGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGGCAAATTCATCCGCCGCTGACCACTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCTTACATCTCACCGAGAGATTTTGAGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGGGTTGCATAGATGACACGCTTATAAATA
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP045956|2|2|957094-957610|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGGTTTGATATCAGCCTCACCGGATTTGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAGCGAGCACGTCCGCCGTAAAATTGCCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATATGGCGCTCACGCGCATGAGCATTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGTTTTTCTAATGCTGGCGTGGTATTAGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACGACAATAAAGCATGTGGCAATTGCGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGGCAAATTCATCCGCCGCTGACCACTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCTTACATCTCACCGAGAGATTTTGAGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTGGGTTGCATAGATGACACGCTTATAAATA
GTGTTCCCCGCGTCAGCGGGGATAAACAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045956.1|WP_000134246.1|963951_965001_+|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl|CDD|234884
NZ_CP045956.1|WP_000080403.1|946193_946928_+|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl|CDD|234997
NZ_CP045956.1|WP_000281487.1|955136_955787_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl|CDD|273869
NZ_CP045956.1|WP_079802181.1|948537_951201_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NZ_CP045956.1|WP_000085105.1|954408_955155_+|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl|CDD|187776
NZ_CP045956.1|WP_154080134.1|951212_952769_+|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl|CDD|274192
NZ_CP045956.1|WP_001221538.1|964981_965743_+|5'/3'-nucleotidase-SurE	unknown	unknown	gnl|CDD|234732
NZ_CP045956.1|WP_001219253.1|963475_963955_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl|CDD|178851
NZ_CP045956.1|WP_001518648.1|956703_956997_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl|CDD|236930
NZ_CP045956.1|WP_001118109.1|961888_962245_+|DUF3561-family-protein	unknown	unknown	gnl|CDD|371891
NZ_CP045956.1|WP_000372384.1|958921_959830_+|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl|CDD|235375
NZ_CP045956.1|WP_079951085.1|947140_948094_-|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl|CDD|185277
NZ_CP045956.1|WP_000206413.1|953339_954398_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl|CDD|273843
NZ_CP045956.1|WP_154080135.1|959839_961279_+|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl|CDD|235349
NZ_CP045956.1|WP_000741653.1|962765_963476_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl|CDD|234670
NZ_CP045956.1|WP_001173663.1|961265_961871_+|adenylyl-sulfate-kinase	unknown	unknown	gnl|CDD|179661
NZ_CP045956.1|WP_000117944.1|952765_953326_+|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl|CDD|187862
NZ_CP045956.1|WP_000490481.1|957624_958671_-|aminopeptidase	unknown	unknown	gnl|CDD|182299
NZ_CP045956.1|WP_000517480.1|962435_962747_+|cell-division-protein-FtsB	unknown	unknown	gnl|CDD|179156
NZ_CP045956.1|WP_000144833.1|955783_956704_+|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl|CDD|274693

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP045956.1|WP_000206413.1|953339_954398_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	5.6e-126	415.6	2.7
NZ_CP045956.1|WP_000281487.1|955136_955787_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	1.5e-74	245.2	1.6
NZ_CP045956.1|WP_079802181.1|948537_951201_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	2.2e-182	602.8	0.0
NZ_CP045956.1|WP_000085105.1|954408_955155_+|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	6.6e-56	183.7	0.1
NZ_CP045956.1|WP_000117944.1|952765_953326_+|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	3.4e-37	122.5	2.2
NZ_CP045956.1|WP_001518648.1|956703_956997_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	3.6e-41	134.0	0.5
NZ_CP045956.1|WP_154080134.1|951212_952769_+|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	9.2e-169	557.0	0.8
NZ_CP045956.1|WP_000144833.1|955783_956704_+|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	7.1e-114	374.1	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP045956.1|WP_000134246.1|963951_965001_+|tRNA-pseudouridine(13)-synthase-TruD	gnl|CDD|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP045956.1|WP_000080403.1|946193_946928_+|phosphoadenosine-phosphosulfate-reductase	gnl|CDD|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47943e-138
NZ_CP045956.1|WP_000281487.1|955136_955787_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl|CDD|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	4.46702e-75
NZ_CP045956.1|WP_079802181.1|948537_951201_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP045956.1|WP_000085105.1|954408_955155_+|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl|CDD|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.80035e-48
NZ_CP045956.1|WP_154080134.1|951212_952769_+|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl|CDD|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP045956.1|WP_001221538.1|964981_965743_+|5'/3'-nucleotidase-SurE	gnl|CDD|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP045956.1|WP_001219253.1|963475_963955_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl|CDD|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.84083e-103
NZ_CP045956.1|WP_001518648.1|956703_956997_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl|CDD|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP045956.1|WP_001118109.1|961888_962245_+|DUF3561-family-protein	gnl|CDD|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP045956.1|WP_000372384.1|958921_959830_+|sulfate-adenylyltransferase-subunit-CysD	gnl|CDD|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP045956.1|WP_079951085.1|947140_948094_-|SPI-1-type-III-secretion-system-effector-SopD	gnl|CDD|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP045956.1|WP_000206413.1|953339_954398_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl|CDD|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.52672e-140
NZ_CP045956.1|WP_154080135.1|959839_961279_+|sulfate-adenylyltransferase-subunit-CysN	gnl|CDD|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP045956.1|WP_000741653.1|962765_963476_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl|CDD|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
NZ_CP045956.1|WP_001173663.1|961265_961871_+|adenylyl-sulfate-kinase	gnl|CDD|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP045956.1|WP_000117944.1|952765_953326_+|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl|CDD|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	9.5399e-34
NZ_CP045956.1|WP_000490481.1|957624_958671_-|aminopeptidase	gnl|CDD|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP045956.1|WP_000517480.1|962435_962747_+|cell-division-protein-FtsB	gnl|CDD|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP045956.1|WP_000144833.1|955783_956704_+|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.64033e-157

Protein sequences

>NZ_CP045956.1|WP_001518648.1|956703_956997_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP045956.1|WP_000144833.1|955783_956704_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP045956.1|WP_000281487.1|955136_955787_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIRREKSRQMIQFSSVDYTGVLVLNDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP045956.1|WP_000085105.1|954408_955155_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHDLPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYSLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLDGRAPDVLREAYRWYQDQFNTLKLTLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP045956.1|WP_000206413.1|953339_954398_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVEKIANCFGKVKAEKKPKDELTNAETEQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALRENMNAVYAQETAFKDFNVMNQQGSMKDVLDFICA
>NZ_CP045956.1|WP_000117944.1|952765_953326_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP045956.1|WP_154080134.1|951212_952769_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPARFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP045956.1|WP_079802181.1|948537_951201_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP045956.1|WP_079951085.1|947140_948094_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNTQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP045956.1|WP_000080403.1|946193_946928_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP045956.1|WP_000490481.1|957624_958671_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP045956.1|WP_000372384.1|958921_959830_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP045956.1|WP_154080135.1|959839_961279_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFALIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP045956.1|WP_001173663.1|961265_961871_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP045956.1|WP_001118109.1|961888_962245_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP045956.1|WP_000517480.1|962435_962747_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP045956.1|WP_000741653.1|962765_963476_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP045956.1|WP_001219253.1|963475_963955_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRISYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP045956.1|WP_000134246.1|963951_965001_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP045956.1|WP_001221538.1|964981_965743_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045956_1	1.5|940401|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT	940401-940432	32	MG592666	Vibrio phage 2.096.O._10N.286.48.B5, partial genome	18359-18390	6	0.812
NZ_CP045956_1	1.5|940401|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT	940401-940432	32	MG592458	Vibrio phage 1.083.O._10N.286.52.B9, partial genome	18316-18347	7	0.781
NZ_CP045956_1	1.1|940157|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT	940157-940188	32	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	690380-690411	8	0.75
NZ_CP045956_1	1.6|940462|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT	940462-940493	32	MK448708	Streptococcus phage Javan23, complete genome	28525-28556	9	0.719
NZ_CP045956_1	1.6|940462|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT	940462-940493	32	MK448897	Streptococcus phage Javan28, complete genome	28525-28556	9	0.719
NZ_CP045956_1	1.7|940523|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT	940523-940554	32	NZ_CP031066	Bacillus sp. SH8-8 plasmid pl193, complete sequence	159159-159190	9	0.719
NZ_CP045956_1	1.7|940523|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT	940523-940554	32	NZ_CP031063	Bacillus sp. AR4-2 plasmid pl192, complete sequence	159160-159191	9	0.719
NZ_CP045956_1	1.7|940523|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT	940523-940554	32	NZ_CP018742	Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence	192417-192448	9	0.719
NZ_CP045956_1	1.7|940523|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT	940523-940554	32	MT511058	Escherichia phage vB_EcoD_SU57, complete genome	37214-37245	9	0.719
NZ_CP045956_2	2.3|957245|32|NZ_CP045956|CRISPRCasFinder,CRT	957245-957276	32	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	41418-41449	9	0.719
NZ_CP045956_2	2.5|957367|32|NZ_CP045956|CRISPRCasFinder,CRT	957367-957398	32	NC_010632	Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence	56615-56646	9	0.719
NZ_CP045956_2	2.8|957550|32|NZ_CP045956|CRISPRCasFinder,CRT	957550-957581	32	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5501-5532	9	0.719
NZ_CP045956_1	1.1|940157|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT	940157-940188	32	NZ_CP049908	Hymenobacter sp. HDW8 plasmid p_unnamed1, complete sequence	80884-80915	10	0.688
NZ_CP045956_1	1.1|940157|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT	940157-940188	32	NZ_CP037921	Hymenobacter sp. 17J36-26 plasmid unnamed1, complete sequence	182378-182409	10	0.688
NZ_CP045956_1	1.9|940645|32|NZ_CP045956|CRISPRCasFinder,CRT	940645-940676	32	NZ_CP015006	Aminobacter aminovorans strain KCTC 2477 plasmid pAA01, complete sequence	127770-127801	10	0.688
NZ_CP045956_1	1.1|940157|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT	940157-940188	32	NZ_CP049038	Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_1, complete sequence	139191-139222	11	0.656

1. spacer 1.5|940401|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT matches to MG592666 (Vibrio phage 2.096.O._10N.286.48.B5, partial genome) position: , mismatch: 6, identity: 0.812

gacaacatcaacacgcagattagcc--agcttga	CRISPR spacer
cacaacagcaacacgcagattagctcaagttt--	Protospacer
 ****** ****************.  **.**  

2. spacer 1.5|940401|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT matches to MG592458 (Vibrio phage 1.083.O._10N.286.52.B9, partial genome) position: , mismatch: 7, identity: 0.781

gacaacatcaacacgcagattagcc--agcttga	CRISPR spacer
cacaacagcaacacgcaggttagctcaagttt--	Protospacer
 ****** **********.*****.  **.**  

3. spacer 1.1|940157|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ggcccccatgtcgctggccgtggatgtgtcgg	CRISPR spacer
cgtcgtccggtcaccggccgtggatgtgtcgg	Protospacer
 *.* .*  ***.*.*****************

4. spacer 1.6|940462|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT matches to MK448708 (Streptococcus phage Javan23, complete genome) position: , mismatch: 9, identity: 0.719

agagcatcactttgcgcggtttcagttgtcgg	CRISPR spacer
gctgcatcacttggcgcggttgcagtaggtgt	Protospacer
.  ********* ******** **** * .* 

5. spacer 1.6|940462|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT matches to MK448897 (Streptococcus phage Javan28, complete genome) position: , mismatch: 9, identity: 0.719

agagcatcactttgcgcggtttcagttgtcgg	CRISPR spacer
gctgcatcacttggcgcggttgcagtaggtgt	Protospacer
.  ********* ******** **** * .* 

6. spacer 1.7|940523|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031066 (Bacillus sp. SH8-8 plasmid pl193, complete sequence) position: , mismatch: 9, identity: 0.719

gattcataatccgtatgccttttttaaataaa	CRISPR spacer
gctaacagatccgtctgcctcttttaaataag	Protospacer
* *    .****** *****.**********.

7. spacer 1.7|940523|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031063 (Bacillus sp. AR4-2 plasmid pl192, complete sequence) position: , mismatch: 9, identity: 0.719

gattcataatccgtatgccttttttaaataaa	CRISPR spacer
gctaacagatccgtctgcctcttttaaataag	Protospacer
* *    .****** *****.**********.

8. spacer 1.7|940523|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018742 (Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence) position: , mismatch: 9, identity: 0.719

gattcataatccgtatgccttttttaaataaa	CRISPR spacer
gctaacagatccgtctgcctcttttaaataag	Protospacer
* *    .****** *****.**********.

9. spacer 1.7|940523|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT matches to MT511058 (Escherichia phage vB_EcoD_SU57, complete genome) position: , mismatch: 9, identity: 0.719

gattcataatccgtatgccttttttaaataaa	CRISPR spacer
ctatcataatccgtaagccatttttaggtatt	Protospacer
   ************ *** ******..**  

10. spacer 2.3|957245|32|NZ_CP045956|CRISPRCasFinder,CRT matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 9, identity: 0.719

aatatatggcgctcacgcgcatgagcattctc	CRISPR spacer
acgcaatggcgctgacgcgcatgatcatttcg	Protospacer
*    ******** ********** ****.. 

11. spacer 2.5|957367|32|NZ_CP045956|CRISPRCasFinder,CRT matches to NC_010632 (Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence) position: , mismatch: 9, identity: 0.719

gaacgacaataaagcatgtggcaattgcgccg	CRISPR spacer
ccacgacaataaagcaattggcaatagttgca	Protospacer
  **************  ******* *.  *.

12. spacer 2.8|957550|32|NZ_CP045956|CRISPRCasFinder,CRT matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 9, identity: 0.719

gttgggttgcatagatgacacgcttataaata	CRISPR spacer
gaattatggcatagatgacatgattataaatt	Protospacer
*    .* ************.* ******** 

13. spacer 1.1|940157|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049908 (Hymenobacter sp. HDW8 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ggcccccatgtcgctggccgtggatgtgtcgg	CRISPR spacer
ggcccccgtgccgctggccgtggtccacgaga	Protospacer
*******.**.************ .     *.

14. spacer 1.1|940157|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037921 (Hymenobacter sp. 17J36-26 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ggcccccatgtcgctggccgtggatgtgtcgg	CRISPR spacer
ggcccccgtgccgctggccgtggtccacgaga	Protospacer
*******.**.************ .     *.

15. spacer 1.9|940645|32|NZ_CP045956|CRISPRCasFinder,CRT matches to NZ_CP015006 (Aminobacter aminovorans strain KCTC 2477 plasmid pAA01, complete sequence) position: , mismatch: 10, identity: 0.688

aattcctcgatagcgatctgcgccaggttgaa	CRISPR spacer
tcggtgccgacagcgatctgcgccaggctgta	Protospacer
    . .***.****************.** *

16. spacer 1.1|940157|32|NZ_CP045956|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049038 (Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_1, complete sequence) position: , mismatch: 11, identity: 0.656

ggcccccatgtcgctggccgtggatgtgtcgg	CRISPR spacer
cagggccatgtagctggccgcggatgtggtct	Protospacer
 .   ****** ********.******* .  

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1654912 : 1664083	10	Enterobacteria_phage(66.67%)	tRNA	NA
DBSCAN-SWA_2	1731279 : 1741786	10	Enterobacteria_phage(37.5%)	NA	NA
DBSCAN-SWA_3	2607872 : 2613225	6	uncultured_Caudovirales_phage(33.33%)	integrase	attL 2611326:2611339|attR 2618132:2618145
DBSCAN-SWA_4	2918588 : 2925901	7	Ralstonia_phage(16.67%)	integrase,protease	attL 2913385:2913399|attR 2924637:2924651

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP045956|1654912:1664083|DBSCAN-SWA
GATGATTGAATTTAACCATGTCAGTAAAACCTTCGGCGATCAACAGGCTGTTAGCGATCTCAATTTGCACTTTAGCGAAGGCAGCTTTTCGGTGTTAATTGGCACCTCCGGTTCGGGAAAATCGACCACTCTGAAGATGATTAACCGGCTGGTAGAGCATGATAGCGGAACGATCCGTTTTGCCGGGGAAGAGATCCGCAGCCTGCCGGTGCTTGAACTGCGCCGTCGCATGGGCTATGCCATTCAGTCTATCGGCCTTTTTCCCCACTGGACGGTGGCGCAAAATATCGCCACCGTACCGCAACTACAAAAGTGGTCGCGTGCGCGGATTAACGATCGTATTGATGAACTGATGGCATTATTGGGTCTGGAAAGCGCGCTGCGCGATCGCTATCCGCATCAGCTTTCCGGCGGGCAACAGCAGCGGGTCGGCGTTGCGCGGGCGCTGGCTGCCGATCCGCAGGTATTGCTGATGGACGAGCCTTTCGGCGCGCTTGATCCGGTAACGCGCGGCGCATTGCAGCAGGAGATGACCCGCATTCATCAGCTACTGGGGCGCACCATCGTACTGGTGACGCACGACATCGACGAGGCGCTACGCCTCGCCGACCATCTGGTGCTGATGGACGGGGGCCACGTTATCCAACAGGGATCGCCGCTTTCTATGCTGACCTCGCCGGAAAATGATTTCGTGCAGGCGTTTTTTGGCCGCAGCGAGCTGGGCGTAAGGCTGCTTTCGTTACGTAGCGTAGGCGATTATGTACGCCGGCATGAACAGCTCAGCGGCGACGCGCTGGTGGAAGAGATGACGCTACGCGATGCGCTATCGATGTTTGTCGCCCGCCGGTGCGACGTCCTGCCGGTGGCGAATCAGCAGGGCGAGCCCTGCGGTACGCTCCATTTCCGCGATCTGCTTTCGGAGACGTCCCCCCGTGAAACGACTGTGTGATCCGCTTCTCTGGCTTATTGTTCTGTTCTTGCTTCTGCTGTTTGGATTGCCTTATAGCCAGCCGTTCTTCGCGGCGCTGTTTCCCGATTTGCCGCGCCCGGTCTACCAACAGGAGAGTTTTGCCGCCCTCGCGCTCGCCCATTTCTGGTTGGTGGGCATCTCAAGTCTGTTTGCCGTCGTGGTGGGCGTCGGCGCAGGGATTGCGGTCACGCGAGAAAGTGGGAAAGAGTTTCGTCCCCTGGTGGAGACTATCGCCGCCGTCGGGCAGACCTTTCCCCCGGTGGCGGTACTGGCGATCGCGGTACCCGTCATGGGTTTTGGTCAGCAACCAGCCATTATCGCCTTGATCCTGTATGGAGTGTTGCCCATCCTGCAGGCGACCCTGGCCGGGCTGGGCGCGGTGCCTGCCAGCGTGATGAGCGTTGCCAGCGGTATGGGAATGAGCCGTCGCCAACAGTTGTATCAGGTTGAGCTGCCGCTGGCCGCGCCGGTGATTCTGGCGGGCATTCGAACCTCGGTGATTATCAATATTGGTACGGCGACCATCGCTTCAACGGTGGGGGCCAGTACGTTAGGCACGCCGATCATTATCGGGCTTAGCGGCTTTAATACGGCCTATGTTATCCAGGGGGCGCTGCTGGTGGCGCTGGCGGCGATCATTATCGACCGCCTGTTTGAAAGGCTGACGCGCGCGCTTACCCGGCACGCAAAATAAAACTGTAACCTGCCAGCATCACGCCGCCGATACCGCCAATAGCCATCAGCAGGAAAAGAGCGATCACCCCGATTTTCGCTACGCGCATTATGTACTCCTTATGTTAATAAAAGGAGTATACATTAAAGCGAATTTGTTAGCTGCTGTTTAAACGCCAAGGGGATGAATGTCGCGTCCCTGGGCGCGCCATGCCAGGAGTTGCTGCTGCTGCGCCAGCGTCTGGTTTTCTCCGCACCATACCAGTAACGTCTTGCCGTCAAACAGTTCCGGGCGGAACTGGCTAAGCGAATGCGCCAACACGTCGATTCGCCATCCCTGTTGGCTGGCGACCCAACCTTCCAGCCACAGGCGGGTGGTATCATGGATATTCCAGCCGATCACCAACGCATCTTTTCCCTGTTTCTTACGCGCAGACGCCAGGCAGAGCGCAATATAGTTGATCAGGATACCGTCAAGAATGCCGAGCAGCGCCTGAAGGGCGGGTTGTTGGCACTGTAATCGTCGCCGCAGCGGGACGAACAGGTTAGTGGTCAATGTTTGGGCTGGATAATCCTGACCGCGTTCTTTGACCCATAGCCGTAAACTGTGCAGATTACTGCTTTGCAGGTAGTGCAGCAGGATCTCCTGCTGTTCGCGCCAGCCGTTAGGTTGTTCGCTACTGTCGCTACTGAGCAGCACTTTGACTTTGCTGACCTGGACGCCGTTATCTATCCAGCGCTTGATTTCGCGGATTCTGTCGATATCGGCATCGTTAAACAGACGATGACCGCCATCCGTTCGCTGTGGTTTTAAAAGTCCATAACGTCTCTGCCACGCGCGCAACGTGACAGGATTGATATCACAAAGCAAAGCCACTTCACCAATTGTGTAAAGCGCCATCGTTTCACCCTTGCTCGCGAGGTCCCGGTTTAACTTTAGACGCTCTTTTACGAACCAGGAAGTTTTGCCTGTTTTTTATGCATTAAAACGCGAAGTAGCGGGTTGCGGCGGGGTGTTTAAGTGATCGTATTCACGAATTCATATTTTTATGCAACAGTTCAAAGAAAGTTAATCGTACTCAATGTATGTTACGCGCTTTTAATTGAAGTGTGGTTTGCGGGTATGTACGAGTTTAATCTGGTGTTGCTGCTGCTTCAGCAGATGTGCGTGTTTCTGGTCATTGCGTGGCTAATGAGTAAAACGCGCTTGTTCATCCCGCTTATGCAGGTCACGGTTCGTCTGCCGCACAAGCTTCTGTGTTACGTCACGTTTTCTATCTTCTGCATTATGGGCACTTATTTTGGGCTACATATCGAAGATTCGATTGCCAATACCCGCGCGATTGGCGCGGTGATGGGTGGCCTACTCGGCGGGCCGGTCGTCGGCGGGCTGGTCGGCCTGACCGGTGGGTTACATCGGTATTCTATGGGCGGCATGACGGCGCTGAGCTGTATGATTTCCACCATCGTCGAAGGGCTGCTGGGAGGGTTGGTACACAGCGTTCTCATACGTCGCGGACGCCCGGACAAAGTGTTTAGCCCGCTGACGGCGGGAGCAATTACGTGTGTTGCCGAACTGGTGCAGATGCTGATCATTTTACTGATAGCCAGGCCGTTTGACGATGCCCTGCATCTGGTCAGTAATATTGCCGCGCCGATGATGGTGACGAATACCGTTGGCGCCGCGCTGTTCATGCGTATTTTGCTCGATAAGCGCGCCATGTTCGAAAAATATACTTCGGCATTTTCTGCTACCGCGCTGAAGGTCGCCGCGTCAACGGAGGGGATTCTGCGTCAGGGATTTAACGAAGTGAACAGTATGAAGGTGGCGCAGGTGTTATATCAGGAGCTGGATATTGGCGCCGTCGCCATCACCGATCGTGAAAAACTGCTGGCTTTTACTGGTATTGGCGACGATCACCATCTACCGGGCAAACCCATTTCATCAGGTTATACGCTGAAAGCGATTGAAACCGGAGAGGTGGTTTATGCCGATGGCAACGAAGTGCCGTACCGCTGTTCGCTACACCCGCAGTGTAAACTCGGCTCGACGCTGGTGATCCCGCTGCGTGGCGAAAATCAGCGAGTCATGGGCACCATTAAATTGTACGAAGCGAAAAACCGACTATTCAGCTCAATTAATCGCACCCTGGGAGAGGGGATTGCGCAGCTTTTATCCGCGCAGATCCTGGCCGGGCAGTATGAACGGCAGAAGGCGTTGCTGACGCAGTCAGAGATCAAGCTGTTGCACGCGCAGGTGAATCCGCATTTTCTGTTTAACGCGCTCAATACCATTAAAGCGGTGATTCGTCGCGACAGCGAACAGGCCAGCCAACTGGTGCAGTACTTGTCGACCTTTTTTCGCAAAAATTTAAAACGCCCGTCGGAAATCGTCACGCTGGCGGATGAAATTGAACACGTGAACGCTTATCTGCAAATTGAAAAAGCGCGTTTTCAGTCGCGTCTGCAGGTACAGCTTGATGTTCCATCGACGCTTTCACGTCAGAAATTGCCTGCGTTTACATTACAGCCGATTGTTGAGAACGCCATTAAACATGGCACGTCGCAACTGCTTGATACCGGCAACGTCGCTATTCGCGCCCGGCGCGAAGGGCAGCATTTGATGTTAGATATTGAAGATAATGCGGGACTGTATCAGCCTTCCGCCGGCAGTAGCGGGCTGGGGATGAGTCTGGTTGATAAACGTCTGCGCGAACACTTTGGCGATGATTATGGTATTAGCGTGGCCTGCGAGCCGGACTGTTTTACCCGAATTACATTACGACTTCCACTGGAGGAGGACGCATGATTAAAGTGCTGATTGTGGATGATGAGCCGTTAGCGCGGGAAAATCTGCGGATTTTGCTCCAGGGGCAGGATGACATTGAGATTGTGGGAGAGTGCGCGAACGCGGTAGAAGCGATTGGCGCGGTACATAAGTTGCGACCTGATGTGCTGTTTCTGGATATTCAGATGCCGCGTATCAGTGGACTGGAGATGGTAGGAATGCTTGATCCGGAACACCGCCCGTATATCGTTTTTTTGACCGCATTTGACGAATACGCCATCAAAGCCTTTGAAGAGCACGCTTTTGATTATCTGCTCAAGCCGATAGAGGAGAAACGGCTGGAAAAAACGTTACATCGTCTGCGTCAGGAGCGCAGTAAACAGGATGTTTCGTTGTTGCCGGAAAACCAGCAGGCGCTTAAATTCATTCCCTGTACCGGACACAGCCGGATCTATTTGTTGCAAATGGATGATGTCGCCTTTGTCAGTAGCCGTATGAGCGGCGTTTATGTGACCAGCAGTGAAGGGAAAGAGGGGTTTACCGAGCTGACGCTGCGCACGCTGGAAAGCCGGACGCCGCTACTGCGTTGTCATCGTCAGTTTCTGGTGAATATGGCCCATTTGCAGGAAATTCGGCTGGAGGATAATGGGCAGGCAGAGCTGATTTTACGCAACGGCCTGACGGTGCCGGTAAGCCGTCGCTATCTGAAAAGTTTAAAAGAGGCGATTGGCCTGTAAAAGACTGTTAGAATATCGTTTTGCCATAGAAACGACCGAAGGCCTCATGCTGAGTAACGATATTCTGCGTAGCGTGCGCTACATTTTAAAAGCTAATAATACCGATCTGGCGCGTATCCTGGCGCTGGGTAACGTTGATGCTACGCCGGAGCAGATAGCAATCTGGTTGCGCAAAGAAGAGGAAGAGGGGTTTCAGCGTTGCCCGGATATCGTGTTGTCCTCATTTCTCAATGGCCTCATTTATGAAAAACGCGGCAAAGATGAGGCGGCGCCTGCATTGACGGCGGAACGTCGTATCAACAACAATATTGTGCTGAAAAAGCTGCGTATTGCCTTTTCGCTAAAAACAGATGATATCCTGGCGATACTTACCGGTCAGTTGTTTCGTGTCTCAATGCCAGAGATCACCGCGATGATGCGCGCGCCGGACCATAAGAACTTCCGCGAATGCGGCGATCAGTTTATGCGTTATTTTCTGCGCGGTCTGGCGGCCCGTGAACACGCGGCGAAGTAATTCTGCGGTATTGTTCCCGGCAGCGTCCTGTCTGACCGGGAAAACGCATTATTATACTAATTGATTCTATGATACCCGCTCTCTTCCAACAGTTTCTGCGAGCGAATCATTGACAGATAGTACGCGGAACAGTTGTCAATTGATGATCCTGGCAATTTACAGAGGTCGCTTATTTTTGCCTGGGTAAAATCAATATCCACATATTCCGTAGCATAGCTATCATAATAGTCGATTCGTTCAGTCAAACCCGGCATACCCTGATAAGCTTCGCCGACTTGACTCAGCATTTTTTGTGCTTCTTCTTTATTATTGGCTTTCAGGGTCTTATAAAGTAGTTTATGTTCAGATATTTGACGTAAAACGATATCCCCTTTGTAGTAATAGGTTAACTTGATTTCAATACCGTTGAGATTACCTACATAGCGTTGTGTTTCCTCTGACTCTTTGCTAGCGGCTATCTTCTTGATAAACGCTGTCATGTTATTTTGCTTTCCCTGGAGAGTATCGTTTTTCTGATCGCAGCCAGTTATGCTAACCGATAGAGAGAGCGCGAATAGTGGCAGTGCCATAAGACGTAGAACCTGCATAACAATTCCTTGTCGTTAAGTATTGGTGTGGCCAGGAATTCAGGGATTATAGGCTTTGGCGAGGGGACTTACAGCGAGGCTGTCTTTTTTCGGAATTCATAAAGAAAAGACGCTGCCGAAGCAGCGCCCTGAGCGACTTTACCAGTCGATGCAATACATTATGCCTGCCAGTTATTTCGCTTCTTTAAAACCAGCAGCTTCCAGCAGCGTCTGGGTTTGTTTCATGCTGATACCTTTGCTGGTATCGCCGGACACCATCGTCCCTGAGATTTGCTGTAACGCTTTAAAGTCCACTTTTTCCATATCCACAGAGACGTTTTCCTGGGCATAGGTATCTTCATAGGTTAATTTTTCTTCCACTCCGGCGATATTTTTATATTTCGCGCTCAGCGGATCGAGAATTTTGGCGGCATCTTCTTTCGTTTTAGCGCCTACAGTGGCATAGCTGATTTTACTTTCAGACGTCTGCTTAATGATTTTGTCACCTTTATAGGTGTAAGTAATTGAAATTTCTGTCCCCGCCAGGTTTGCGTTAAAGGTCTTTGATTCTTCTTTATCGCCACAGCCAGCAAGAGAGAACACCAGTACGGAAGCCAAAGCCGCGGACAATAACTTGCCAGAAATTTTCATCTAAAACTCCATTTTATATAATGATTGGGTTTTTAAAATAATTTCAATGAATTAATTTAACCCAGTAATAGCAATGTATCAGGGAGAGATAGAATATGACTTTTAGCCGTTATTTAGCAGTCCGGATATGGAGTCTTAACGCTATTGCTTATTAAGGAAAAAGTTAAAACACGCGGATGGGGTGATATGCCAGTCAGGATTAAGCGGTTAAAAAAGCCGGAGCATGCTCCGGCTTGTTGCTTATTTCACCTGTTGGCCAGGCTTCGCGCCGTCATCAGGGCTTAACAGGAAGATATCTTTCCCGCCAGGTCCTGCGGCCATCACCATTCCCTCGGAGACGCCAAAGCGCATTTTGCGCGGCGCGAGGTTGGCGACCATTACCGTCTGGCGGCCAATCAGCGCCTGCGGGTCCGGGTAGGCGGAACGAATGCCGGAGAAGACGTTACGCTTCTCGCCGCCCAGATCCAGCGTCAGACGCAGCAATTTGTCAGAACCATCTACGAACTCAGCATTTTCAATCAATGCTACGCGCAGGTCAATTTTGGCGAAATCGTCAAAGGTGATGGTTTCCTGAATCGGGAAGTCGGCTAACGGGCCGGTAACCGGCGCGGCTGCGGCTTTCACCTCTTCTTTAGACGATTCAACCAGCGCTTCAACTTGCTTCATGTCGATGCGATTGTAGAGCGCCTTAAAGGTGTTGACCTTGTGACCGAGCAGCGGCTGTTCGATGGCATCCCAGTTCAACTCACTGTTCAGGAAGGCTTCAACGCGTTCAGAAAGCGTCGGCAGTACCGGTTTCAGATACGTCATCAGCACGCGGAACAGGTTGATGCCCATTGAGCAAATGGCCTGCAGGTCCGCGTCGCGGCCTTCTTGTTTAGCCACCACCCACGGCGCTTGCTCGTCAACATAACGGTTAGCGATGTCGGCCAGCGCCATAATCTCACGGATAGCTTTACCGAATTCACGGCTTTCCCATGCTTCGCCAATCACCGCAGCGGCGTCAGTAAAGGTTTTATACAATTGCGGATCGGCCAGTTCAGCCGCCAGCACGCCGTCGAAACGCTTATTGATAAAACCGGCGTTACGCGAGGCCAGGTTGACTACTTTATTGACGATATCGGCATTGACGCGCTGGACAAAGTCTTCCAGGTTCAGGTCGATGTCATCAATGCGTGAAGAAAGCTTCGCGGTGTAGTAGTAGCGCAGGCTGTCGGCGTCAAAGTGTTTCAGCCAGGTGCTGGCCTTAATAAAGGTGCCGCGAGACTTAGACATCTTCGCGCCGTTCACCGTCACGTAACCGTGAACGAACAGGTTGGTCGGCTTACGGAAGTGGCTGCCTTCCAGCATGGCAGGCCAGAACAGGCTGTGGAAATAGACGATGTCTTTGCCGATAAAGTGGTACAGCTCGGCATCGGAGTCTTTTTTCCAGTACTCATCAAAACTGGTCGTGTCACCGCGCTTATCGCACAGATTTTTGAAGGAGCCCATATAGCCAATCGGCGCGTCCAGCCAGACGTAGAAATATTTGCCCGGCGCGTTCGGGATTTCGAAACCAAAATACGGCGCGTCGCGGGAAATGTCCCACTGTTGCAGGCCGGATTCAAACCACTCCTGCATTTTGTTCGCCACCTGCTCCTGCAGCGCGCCGCTGCGGGTCCACGCCTGCAACATTTCGCTGAATGACGGCAGGTCAAAGAAAAAGTGCTCGGAGTCACGCATTACCGGCGTCGCGCCGGACACCACGGATTTCGGTTCGATAAGTTCGGTCGGGCTGTAGGTCGCGCCGCACACTTCACAGTTATCGCCGTACTGGTCTGCGGATTTACATTTCGGGCAGGTGCCTTTCACAAATCGGTCCGGCAGGAACATGCCTTTTTCCGGATCGTAGAGTTGAGAGATGGTGCGGTTCTTAATAAAACCGTTCTCTTTCAGGCGCGTATAAATCAGCTCGGACAGCTCGCGATTCTCGTCGCTGTGCGTTGAGTGGTAGTTGTCGTAGCTAATATTAAAACCGGCGAAATCGGTCTGGTGCTCCTGGCTCATTTCACCGATCATTTGCTCCGGCGTAATACCAAGCTGCTGCGCTTTCAGCATGATCGGCGTGCCATGAGCGTCATCGGCACAGATGAAGTTAACCTCATGGCCGCGCATTCGCTGGTAACGGACCCAGACATCAGCCTGGATGTGCTCCAGCATATGGCCGAGGTGGATAGAGCCGTTGGCGTACGGCAGCGCGCACGTTACCAGAATTTTCTTCGCGACTTGAGTCAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP045956|1654912:1664083|1655843_1656575_+|WP_000824854.1|DBSCAN-SWA
MKRLCDPLLWLIVLFLLLLFGLPYSQPFFAALFPDLPRPVYQQESFAALALAHFWLVGISSLFAVVVGVGAGIAVTRESGKEFRPLVETIAAVGQTFPPVAVLAIAVPVMGFGQQPAIIALILYGVLPILQATLAGLGAVPASVMSVASGMGMSRRQQLYQVELPLAAPVILAGIRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGALLVALAAIIIDRLFERLTRALTRHAK
>NZ_CP045956|1654912:1664083|1657676_1659362_+|WP_000272850.1|DBSCAN-SWA
MYEFNLVLLLLQQMCVFLVIAWLMSKTRLFIPLMQVTVRLPHKLLCYVTFSIFCIMGTYFGLHIEDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSMGGMTALSCMISTIVEGLLGGLVHSVLIRRGRPDKVFSPLTAGAITCVAELVQMLIILLIARPFDDALHLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISSGYTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQYERQKALLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQASQLVQYLSTFFRKNLKRPSEIVTLADEIEHVNAYLQIEKARFQSRLQVQLDVPSTLSRQKLPAFTLQPIVENAIKHGTSQLLDTGNVAIRARREGQHLMLDIEDNAGLYQPSAGSSGLGMSLVDKRLREHFGDDYGISVACEPDCFTRITLRLPLEEDA
>NZ_CP045956|1654912:1664083|1656722_1657454_-|WP_001240418.1|DBSCAN-SWA
MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDNGVQVSKVKVLLSSDSSEQPNGWREQQEILLHYLQSSNLHSLRLWVKERGQDYPAQTLTTNLFVPLRRRLQCQQPALQALLGILDGILINYIALCLASARKKQGKDALVIGWNIHDTTRLWLEGWVASQQGWRIDVLAHSLSQFRPELFDGKTLLVWCGENQTLAQQQQLLAWRAQGRDIHPLGV
>NZ_CP045956|1654912:1664083|1660648_1661179_-|WP_001197951.1|DBSCAN-SWA
MQVLRLMALPLFALSLSVSITGCDQKNDTLQGKQNNMTAFIKKIAASKESEETQRYVGNLNGIEIKLTYYYKGDIVLRQISEHKLLYKTLKANNKEEAQKMLSQVGEAYQGMPGLTERIDYYDSYATEYVDIDFTQAKISDLCKLPGSSIDNCSAYYLSMIRSQKLLEESGYHRIN
>NZ_CP045956|1654912:1664083|1662049_1664083_-|WP_000195332.1|tRNA|DBSCAN-SWA
MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSDENRELSELIYTRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSADQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDTTSFDEYWKKDSDAELYHFIGKDIVYFHSLFWPAMLEGSHFRKPTNLFVHGYVTVNGAKMSKSRGTFIKASTWLKHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLAAELADPQLYKTFTDAAAVIGEAWESREFGKAIREIMALADIANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPTLSERVEAFLNSELNWDAIEQPLLGHKVNTFKALYNRIDMKQVEALVESSKEEVKAAAAPVTGPLADFPIQETITFDDFAKIDLRVALIENAEFVDGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQALIGRQTVMVANLAPRKMRFGVSEGMVMAAGPGGKDIFLLSPDDGAKPGQQVK
>NZ_CP045956|1654912:1664083|1660124_1660592_+|WP_000950413.1|DBSCAN-SWA
MLSNDILRSVRYILKANNTDLARILALGNVDATPEQIAIWLRKEEEEGFQRCPDIVLSSFLNGLIYEKRGKDEAAPALTAERRINNNIVLKKLRIAFSLKTDDILAILTGQLFRVSMPEITAMMRAPDHKNFRECGDQFMRYFLRGLAAREHAAK
>NZ_CP045956|1654912:1664083|1654912_1655860_+|WP_000569166.1|DBSCAN-SWA
MIEFNHVSKTFGDQQAVSDLNLHFSEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGTIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWTVAQNIATVPQLQKWSRARINDRIDELMALLGLESALRDRYPHQLSGGQQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRIHQLLGRTIVLVTHDIDEALRLADHLVLMDGGHVIQQGSPLSMLTSPENDFVQAFFGRSELGVRLLSLRSVGDYVRRHEQLSGDALVEEMTLRDALSMFVARRCDVLPVANQQGEPCGTLHFRDLLSETSPRETTV
>NZ_CP045956|1654912:1664083|1656555_1656663_-|WP_001261696.1|DBSCAN-SWA
MRVAKIGVIALFLLMAIGGIGGVMLAGYSFILRAG
>NZ_CP045956|1654912:1664083|1659358_1660078_+|WP_000598637.1|DBSCAN-SWA
MIKVLIVDDEPLARENLRILLQGQDDIEIVGECANAVEAIGAVHKLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKPIEEKRLEKTLHRLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMDDVAFVSSRMSGVYVTSSEGKEGFTELTLRTLESRTPLLRCHRQFLVNMAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL
>NZ_CP045956|1654912:1664083|1661350_1661809_-|WP_000703137.1|DBSCAN-SWA
MKISGKLLSAALASVLVFSLAGCGDKEESKTFNANLAGTEISITYTYKGDKIIKQTSESKISYATVGAKTKEDAAKILDPLSAKYKNIAGVEEKLTYEDTYAQENVSVDMEKVDFKALQQISGTMVSGDTSKGISMKQTQTLLEAAGFKEAK

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1|1654912_1655860_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
WP_000824854.1|1655843_1656575_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1|1656555_1656663_-	protein YohO	NA	NA	NA	NA
WP_001240418.1|1656722_1657454_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272850.1|1657676_1659362_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_000598637.1|1659358_1660078_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1|1660124_1660592_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001197951.1|1660648_1661179_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1|1661350_1661809_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195332.1|1662049_1664083_-|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NZ_CP045956|1731279:1741786|DBSCAN-SWA
TATGCCCGTGAATAAGTTCTCCCGACGTACCCTCCTGACGGCAGGTTCCGCGCTTGCTGTTCTTCCTTTTCTGCGCGCCTTGCCGGTACAGGCGCGTGAACCTCGCGAGACCGTCGATATTAAGGATTATCCGGCGGATGACGGTATCGCCTCGTTCAAACAGGCCTTCGCCGACGGACAGACCGTGGTCGTACCGCCAGGATGGGTGTGTGAAAATATCAATGCGGCGATAACGATTCCGGCGGGAAAAACGCTGCGGGTACAGGGCGCGGTGCGTGGGAATGGCCGGGGACGGTTTATTTTGCAGGACGGGTGTCAGGTGGTGGGGGAGCAGGGCGGCAGTCTGCACAATGTGACGCTGGATGTTCGCGGGTCGGACTGTGTGATTAAAGGCGTGACGATGAGCGGCTTTGGCCCCGTCGCGCAAATTTTCATCGGCGGTAAGGAACCGCAGGTGATGCGTAATCTCATTATCGATGACATCACCGTTACCCACGCCAACTACGCCATTCTCCGCCAGGGATTTCATAACCAAATGGACGGCGCGCGGATTACGCATAGCCGCTTTAGCGATTTGCAGGGGGACGCCATTGAGTGGAATGTCGCGATTCACGACCGCGACATCCTGATTTCCGATCATGTCATCGAACGCATTGATTGTACCAATGGCAAAATCAACTGGGGGATCGGCATCGGGCTGGCGGGTAGCACCTATGACAACAGTTATCCTGAAGATCAGGCAGTAAAAAACTTTGTGGTGGCCAATATTACCGGATCTGATTGCCGACAGCTGGTGCACGTAGAAAATGGCAAACATTTCGTCATTCGCAATGTCAAAGCCAAAAACATCACGCCCGATTTCAGTAAAAATGCGGGTATTGATAACGCAACGATCGCCATTTATGGCTGTGATAATTTCGTCATTGATAATATTGATATGACGAATAGTGCTGGGATGCTCATCGGCTATGGCGTCGTTAAAGGAAAATACCTGTCAATTCCGCAAAACTTTAAATTAAACGCTATTCGGTTGGATAATCGCCAGGTTGCTTATAAATTACGCGGCATTCAAATTTCCTCCGGCAACATCCCCTCTTTTGTCGCCATCACCAATGTACGGATGACGCGTGCTACGCTGGAACTGCATAATCAACCGCAGCACCTCTTTCTGCGTAATATCAACGTGATGCAAACTTCAGCGATTGGCCCGGCGTTAAAAATGCATTTCGATTTGCGTAAAGATGTCCGTGGTCAATTTATGGCCCGCCAGGACACGCTGCTTTCCCTCGCTAATGTTCATGCCATCAATGAAAACGGGCAGAGTTCCGTGGATATCGACAGGATTAATCACCAAACCGTGAATGTCGAAGCAGTGAATTTTTCGCTGCCGAAGCGGGGAGGGTAAGTACCGCTATTTTTACGAAAATTCCTGGGAAAAAGTTGTTCATACTTAATGTTATGGTGCCGACTAAGACGTAATGTAAAGCGTGCCATCATTATCCCTGGCAGCAGAGTAATTCATGCTGGCGAAAACAAGCTAAAGAGCTATAATTCAGCAACCATTTTACAGGTGGAAGAAACAATGATGAATTTGAAAGCAGTTATACCGGTAGCGGGTTTGGGTATGCATATGTTGCCTGCCACCAAGGCAATCCCAAAAGAGATGCTACCGATCGTCGACAAGCCAATGATTCAGTACATTGTCGATGAGATTGTGGCTGCAGGGATCAAAGAAATCGTACTGGTGACTCACGCGTCTAAAAACGCCGTTGAGAACCACTTCGACACCTCTTATGAACTTGAATCACTTCTTGAGCAGCGCGTTAAGCGCCAGCTTTTGGCGGAAGTGCAATCTATCTGCCCACCGGGCGTGACGATTATGAACGTTCGCCAGGCGCAGCCGTTAGGGCTGGGGCACTCTATTCTGTGCGCGCGTCCGGTCGTGGGCGATAACCCTTTCATTGTGGTACTCCCGGATATTATTATCGATGATGCTACCGCCGATCCGCTGCGCTATAACCTTGCGGCGATGGTGGCGCGTTTCAATGAAACGGGTCGCAGCCAGGTGCTGGCGAAGCGCATGAAAGGTGATTTATCGGAGTATTCCGTTATCCAGACGAAAGAACCTCTGGATAATGAAGGCAAAGTCAGCCGGATTGTGGAGTTTATCGAAAAACCGGATCAGCCGCAGACGCTGGATTCCGATTTGATGGCGGTAGGCCGTTATGTGCTTTCAGCCGACATCTGGGCGGAACTGGAAAGAACCGAACCGGGCGCCTGGGGCCGTATCCAGCTCACCGATGCCATTGCAGAACTGGCGAAAAAACAGTCGGTTGACGCGATGCTAATGACGGGTGACAGCTATGACTGCGGTAAAAAAATGGGCTACATGCAGGCATTTGTGAAGTACGGGCTGCGCAACCTGAAAGAAGGAGCGAAGTTCCGTAAGAGCATAGAGCAGCTTTTGCATGAATAAGTATTAACAACCGTGATAAATGGTTGGTGATAAACATAATAACGGCAGTGAACATTCGAAGCGGCAAGTTGGCTGAAGCGAGTGTTGACTGCCGTTTTAGTTTTGTATAAAGGGCTTAAGTAACAAGGGGTTATCTGGAGCATTTTAATGCTGATTTTATAAGATTAATCCTTGTTTCCGGATGCAATTAATAAGACAATTAGCGTTTAAGTTTTAGTGAGCTTTGCCCTGCTGGGCGAGGTTTGTAACAAGTCGATATGTACGCAGTGCACTGGTAGCTGATGAGCCAGGGGCGGTAGCGTGTGTAACGACTTGAGCAATTAATTTTTATTGGCAAATTAAATACCACATTAAATACGCCTTATGGAATAGAAAAGTGAAGATACTTATTACTGGCGGGGCAGGTTTTATTGGATCAGCTGTTGTCCGCCATATTATTAAGAATACACAGGACACTGTAGTTAATATTGATAAATTAACCTACGCCGGTAATCTTGAATCCCTTTCTGATATTTCTGAAAGTAATCGCTACAATTTTGAACACGCGGATATTTGTGATTCCGCTGAAATAACGCGTATTTTTGAGCAGTACCAGCCGGACGCGGTGATGCATTTGGCTGCGGAAAGTCATGTGGACCGTTCGATTACCGGGCCAGCAGCATTTATTGAAACCAATATCGTCGGCACCTATGTACTTCTTGAAGTTGCGCGTAAATACTGGTCTGCGCTTGGCGAAGATAAAAAAAATAATTTTCGTTTTCATCATATTTCCACTGATGAAGTTTACGGCGATTTACCGCATCCTGATGAAGTTGAAAACAGCGTTACGCTGCCGTTATTTACTGAAACGACGGCATATGCGCCAAGTAGCCCCTATTCTGCGTCAAAAGCATCCAGCGATCATTTAGTCCGTGCCTGGCGGCGTACCTATGGTCTACCAACGATCGTTACCAATTGTTCTAATAACTATGGCCCTTATCACTTCCCTGAAAAACTGATTCCGTTGGTCATTTTGAACGCACTGGAAGGAAAGCCTTTGCCAATTTATGGCAAAGGGGATCAGATTCGCGATTGGCTATATGTAGAAGATCATGCTCGCGCGCTTCATATGGTAGTGACTGAAGGCAAGGCGGGGGAGACTTATAACATTGGTGGCCACAATGAGAAGAAAAATCTCGATGTGGTATTTACCATCTGTGATCTGCTGGACGAGATTGTACCCAAAGCGACTTCTTATCGTGAACAAATCACTTATGTCGCGGATCGTCCGGGCCATGATCGTCGTTATGCCATTGATGCAGGTAAAATTAGCCGCGAATTAGGCTGGAAACCGCTGGAGACCTTTGAAAGCGGTATTCGTAAAACAGTGGAATGGTACCTTGCAAATACTCAATGGGTAAACAATGTTAAAAGTGGGGCGTATCAGAGTTGGATAGAACAGAACTATGAAGGACGCCAGTAATGAATATCTTACTTTTTGGTAAGACAGGGCAAGTAGGCTGGGAGTTGCAACGTTCTCTGGCACCAGTAGGGAATCTGATTGCCCTGGATGTCCATTCAAAAGAGTTTTGCGGTGATTTTAGTAATCCGAAAGGCGTTGCCGAAACCGTTCGTAAGCTTCGTCCCGATGTGATTGTTAACGCAGCAGCACATACTGCAGTAGATAAAGCAGAGTCTGAACCAGAACTGGCGCAGTTACTTAACGCCACCAGTGTGGAAGCCATCGCTAAAGCAGCCAACGAAACTGGCGCATGGGTAGTGCATTATTCAACCGATTATGTATTTCCTGGTACCGGCGATATCCCATGGCAGGAAACGGACGCTACGTCGCCGCTGAATGTCTATGGCAAGACCAAACTGGCGGGAGAAAAGGCCCTGCAGGATAACTGCCCTAAGCATCTTATCTTCCGCACCAGTTGGGTTTATGCAGGTAAGGGCAATAATTTCGCAAAGACAATGCTTCGTCTGGCGAAAGAGCGTCAGACACTTTCAGTCATCAACGATCAGTACGGTGCGCCAACCGGTGCAGAATTACTGGCTGACTGCACGGCTCATGCGATCCGTGTGGCGTTAAAGAAACCAGAAGTCGCAGGTCTTTACCATCTGGTTGCCGGGGGAACCACAACCTGGCATGACTACGCGGCCTTAGTCTTTGACGAGGCGCGCAAAGCAGGGATAACGCTTGCGCTGACTGAGCTTAATGCTGTGCCGACCAGCGCCTACCCGACGCCGGCGAGCAGACCAGGCAATTCGCGTCTCAATACTGAAAAGTTTCAGCGTAATTTTGACCTTATTCTGCCGCAATGGGAATTAGGAGTTAAGCGCATGCTGACTGAAATGTTTACGACGACAACCATCTGATAAATTTAAATGCCCATCAGGGCATTTTCTATGAATGAGAAATGGAAATGAAAACGCGTAAGGGCATTATTTTAGCGGGGGGCTCCGGCACCCGTCTTTATCCGGTGACCATGGCGGTAAGTAAGCAATTGCTACCAATTTATGATAAACCGATGATTTACTATCCCCTTTCCACGCTTATGCTGGCAGGCATTCGGGATATCCTGATCATCAGTACGCCACAGGACACGCCGCGTTTTCAACAACTGCTGGGAGACGGCAGCCAGTGGGGGCTGAATCTTCAATATAAAGTACAGCCAAGCCCGGATGGCTTAGCACAGGCGTTTATTATTGGTGAAGAGTTCATTGGTAATGATGATTGTGCATTAGTACTGGGTGACAATATCTTCTATGGTCATGATTTACCAAAGTTAATGGAAGCTGCCGTTAATAAAGAAAGTGGTGCTACCGTCTTTGCTTATCATGTAAACGATCCGGAGCGCTACGGTGTGGTTGAGTTTGACCAAAGTGGCACAGCCGTTAGTCTGGAGGAAAAACCGTTACAACCGAAGAGTAATTACGCGGTAACGGGGCTGTATTTTTATGATAATAGCGTGGTGGAGATGGCGAAAAATCTTAAGCCTTCCGCTCGCGGTGAGTTAGAAATCACGGATATTAACCGTATCTATATGGATCAGGGAAGATTGTCTGTCGCCATGATGGGGCGCGGTTATGCCTGGCTGGATACAGGGACGCATCAGAGTTTGATAGAGGCCAGTAATTTTATTGCAACCATCGAAGAACGCCAGGGGCTAAAAGTGTCCTGCCCGGAAGAGATCGCATTTCGTAAAAATTTTATAAATGCACAACAGGTTATAGAACTGGCCGGGCCATTATCAAAAAATGATTATGGCAAATATTTGCTGAAGATGGTGAAAGGTTTATAAGTGATGATTGTGATTAAAACAGCAATACCAGATGTCTTGATCTTAGAGCCTAAAGTTTTTGGCGATGAGAGGGGATTCTTTTTTGAAAGTTATAACCAGCAGACCTTTGAAGAGTTGATTGGACGTAAAGTTACATTTGTTCAAGATAATCATTCAAAATCCAAAAAGAACGTACTCAGAGGGCTACATTTTCAGAGAGGAGAAAATGCACAGGGGAAGTTAGTTCGTTGTGCTGTCGGTGAGGTTTTTGATGTTGCGGTCGATATCCGAAAAGAATCGCCTACTTTTGGTCAATGGGTTGGCGTAAATCTATCTGCTGAGAATAAGCGACAGCTTTGGATTCCAGAAGGTTTTGCTCATGGTTTTGTTACTCTTAGTGAGTATGCAGAGTTTCTGTACAAAGCAACTAATTATTACTCACCTTCATCGGAAGGTAGCATTTTATGGAATGATGAGACAATAGGTATTGAATGGCCTTTTTCTCAGCTGCCTGAGCTTTCAGCAAAAGATGCTGCAGCACCTTTACTGCATCAAGCCTTGTTAACAGAGTAAGCATCGTGTCTCATATTATTAAGATTTTTCCATCAAATATTGAATTTTCCGGTAGAGAGGATGAATCAATCCTCGATGCTGCGCTATCGGCTGGCATCCATCTTGAACATAGCTGCAAAGCGGGTGATTGTGGTATCTGTGAGTCCGATTTGTTGGCGGGAGAAGTTGTTGACTCCAAAGGTAATATTTTTGGACAGGGTGATAAAATACTAACCTGCTGCTGTAAACCTAAAACCGCCCTTGAGCTAAATGCGCATTTTTTTCCTGAACTAGCTGGACAGACAAAAAAAATTGTCCCATGCAAGGTAAATAGTGCTGTACTGGTTTCAGGCGATGTTATGACTTTGAAGTTACGCACACCACCAACAGCAAAAATTGGCTTCCTTCCAGGGCAGTATATCAATTTACATTATAAAGGTGTAACTCGCAGTTATTCTATCGCTAATAGTGATGAGTCGAATGGTATTGAGTTGCATGTAAGGAATGTTCCCAATGGTCAGATGAGCTCTCTCATTTTTGGGGAGTTACAAGAAAATACTCTTATGCGCATTGAAGGACCTTGCGGAACATTTTTTATTCGTGAAAGTGACAGACCTATAATCTTCCTTGCAGGCGGTACTGGATTCGCTCCAGTTAAATCAATGGTTGAGCATCTCATTCAGGGAAAATGTCGTCGTGAGATCTACATCTACTGGGGAATGCAAGATAGTAAAGATTTTTACTCTGCATTACCGCAGCAGTGGAGTGAACAGCACGACAACGTTCATTATATCCCTGTTGTTTCTGGTGATGACGCCGAATGGGGGGGAAGAAAGGGATTTGTCCATCATGCTGTGATGGATGATTTTGATTCTCTAGAGTTCTTCGATATATATGCATGTGGTTCACCTGTGATGATCGATGCCAGTAAAAAGGACTTTATGATGAAAAATCTCTCTGTAGAACATTTCTATTCTGATGCATTTACCGCATCTAAATAATATTGAGGATAATTTATGAAAGCGGTCATCCTGGCTGGTGGACTTGGTACCAGACTAAGTGAAGAAACAATTGTAAAACCAAAACCGATGGTAGAAATTGGTGGCAAGCCTATTCTTTGGCACATTATGAAAATGTATTCTGTGCATGGTATCAAGGATTTTATTATCTGCTGTGGTTATAAAGGATATGTGATTAAAGAATATTTTGCGAACTACTTCCTTCACATGTCAGATGTAACATTCCATATGGCTGAAAATCGTATGGAAGTTCACCATAAACGTGTTGAACCATGGAATGTCACATTGGTTGATACGGGTGATTCTTCAATGACTGGTGGTCGTCTGAAACGTGTTGCTGAATACGTAAAAGATGACGAGGCTTTCCTGTTTACTTATGGTGATGGCGTTGCCGACCTTGATATCAAAGCGACTATCGATTTCCATAAGGCTCACGGTAAGAAAGCGACTTTAACAGCTACTTTTCCACCAGGACGCTTTGGCGCATTAGATATCCAAGCTGGTCAGGTCCGGTCATTCCAGGAAAAACCGAAAGGCGATGGGGCAATGATCAATGGTGGTTTCTTTGTGTTGAATCCATCGGTTATCGATCTCATCGATAACGATGCAACAACCTGGGAACAAGAGCCATTAATGACATTGGCACAACAGGGGGAGTTAATGGCTTTTGAACACCCAGGTTTCTGGCAGCCGATGGATACCCTACGTGATAAAGTTTACCTTGAAGGGCTGTGGGAAAAAGGTAAAGCTCCGTGGAAAACCTGGGAGTAAGTAGATGATTGATAAAAATTTTTGGCAAGGTAAACGTGTATTCGTTACCGGCCATACTGGCTTTAAAGGAAGCTGGCTTTCGCTATGGCTGACTGAAATGGGTGCAATTGTAAAAGGCTATGCACTTGATGCGCCAACTGTTCCAAGTTTATTTGAGATAGTGCGTCTTAGTGATCTTATGGAATCTCATATTGGCGACATTCGTGATTTTGAAAAGCTGCGCAATTCTATTGCAGAATTTAAGCCAGAAATTGTTTTCCATATGGCAGCCCAGCCTTTAGTGCGCCTATCTTATGAACAGCCAATCGAAACATACTCAACAAATGTTATGGGTACTGTCCATTTGCTTGAAGCAGTTAAGCAAGTAGGTAACATAAAGGCAGTCGTAAATATCACCAGTGATAAGTGCTACGACAATCGTGAGTGGGTGTGGGGCTATCGTGAGAACGAACCCATGGGAGGGTACGATCCATACTCTAATAGTAAAGGTTGTGCAGAATTAGTCGCGTCTGCATTCCGGAACTCATTCTTCAATCCTGCAAATTATGAGCAACATGGCGTTGGTTTGGCGTCTGTGAGGGCTGGTAATGTCATAGGCGGAGGCGATTGGGCTAAAGACCGTTTAATTCCCGATATTCTGCGCTCATTTGAAAATAACCAGCAGGTTATTATTCGAAACCCATATTCTATCCGTCCCTGGCAGCATGTACTGGAGCCTCTTTCTGGTTACATTGTGGTGGCGCAACGCTTATATACAGAAGGTGCTAAGTTTTCTGAAGGATGGAATTTCGGCCCGCGTGATGAAGATGCGAAGACGGTCGAATTTATTGTTGACAAGATGGTCACGCTTTGGGGTGATGATGCAAGCTGGTTACTGGATGGTGAGAATCATCCTCATGAGGCACATTACCTGAAACTGGATTGCTCTAAAGCAAATATGCAATTAGGATGGCATCCGCGTTGGGGATTGACTGAAACACTTGGTCGCATCGTAAAATGGCATAAAGCATGGATTCGCGGCGAAGATATGTTGATTTGTTCAAAGCGTGAAATCAGCGACTATATGTCTGCAACTACTCGTTAAGAAAATAAGTTTAAGGAATCAAAGTAATGACAGCAAATAACCTGCGTGAGCAAATCTCTCAGCTTGTCGCTCAGTATGCGAATGAGGCATTGAGCCCGAAACCTTTTGTTGCAGGTACAAGCGTTGTGCCTCCTTCCGGGAAGGTTATTAGTGCCAAAGAGTTACAATTGATGGTTGAGGCGTCTCTTGATGGATGGCTAACTACTGGTCGTTTCAATGATGCCTTTGAGAAAAAACTTGGGGAATTTATTGGGGTTCCTCATGTTTTAACGACTACATCTGGCTCTTCGGCAAACTTGCTGGCACTGACTGCGCTGACTTCCCCAAAATTAGGCGAGCGTGCTCTCAAACCTGGTGATGAGGTTATTACTGTCGCTGCTGGCTTCCCGACTACAGTTAACCCGGCGATCCAGAATGGTTTAATACCGGTATTCGTGGATGTTGATATCCCGACATATAATATCGATGCCTCTCTCATTGAAGCTGCAGTTACTGAGAAATCAAAAGCGATAATGATCGCTCATACACTCGGTAATGCATTTAACCTGAGTGAAGTTCGTCGGATTGCCGATAAATATAACTTATGGTTGATTGAAGACTGCTGTGATGCCCTTGGGACGACTTATGAAGGCCAGATGGTAGGTACCTTTGGTGACATCGGAACCGTTAGTTTTTATCCGGCTCACCATATCACAATGGGTGAAGGCGGTGCTGTATTCACCAAGTCAGGTGAACTGAAGAAAATTATTGAGTCGTTCCGTGACTGGGGCCGGGATTGTTATTGTGCGCCAGGATGCGATAACACCTGCGGTAAACGTTTTGGTCAGCAATTGGGATCACTTCCTCAAGGCTATGATCACAAATATACTTATTCCCACCTCGGATATAATCTCAAAATCACGGACATGCAGGCAGCATGTGGTCTGGCTCAGTTGGAGCGCGTAGAAGAGTTTGTAGAGCAGCGTAAAGCTAACTTTTCCTATCTGAAACAGGGCTTGCAATCTTGCACTGAATTCCTCGAATTACCAGAAGCAACAGAGAAATCAGACCCATCCTGGTTTGGCTTCCCTATCACCCTGAAAGAAACTAGCGGTGTTAACCGTGTCGAACTGGTGAAATTCCTTGATGAAGCAAAAATCGGTACACGTTTACTGTTTGCTGGAAATCTGATTCGCCAACCGTATTTTGCTAATGTGAAATATCGTGTAGTGGGTGAGTTGACAAATACCGACCGTATAATGAATCAAACGTTCTGGATTGGTATTTATCCTGGCTTGACTACAGAGCATTTAGATTATGTAGTTAGCAAATTTGAAGAGTTTTTTGGTTTAAATTTCTAA

Protein sequences of DBSCAN-SWA_2

>NZ_CP045956|1731279:1741786|1737041_1737593_+|WP_000973709.1|DBSCAN-SWA
MMIVIKTAIPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYKATNYYSPSSEGSILWNDETIGIEWPFSQLPELSAKDAAAPLLHQALLTE
>NZ_CP045956|1731279:1741786|1732860_1733754_+|WP_000981469.1|DBSCAN-SWA
MMNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFIVVLPDIIIDDATADPLRYNLAAMVARFNETGRSQVLAKRMKGDLSEYSVIQTKEPLDNEGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRNLKEGAKFRKSIEQLLHE
>NZ_CP045956|1731279:1741786|1737598_1738573_+|WP_000018223.1|DBSCAN-SWA
MSHIIKIFPSNIEFSGREDESILDAALSAGIHLEHSCKAGDCGICESDLLAGEVVDSKGNIFGQGDKILTCCCKPKTALELNAHFFPELAGQTKKIVPCKVNSAVLVSGDVMTLKLRTPPTAKIGFLPGQYINLHYKGVTRSYSIANSDESNGIELHVRNVPNGQMSSLIFGELQENTLMRIEGPCGTFFIRESDRPIIFLAGGTGFAPVKSMVEHLIQGKCRREIYIYWGMQDSKDFYSALPQQWSEQHDNVHYIPVVSGDDAEWGGRKGFVHHAVMDDFDSLEFFDIYACGSPVMIDASKKDFMMKNLSVEHFYSDAFTASK
>NZ_CP045956|1731279:1741786|1734130_1735216_+|WP_000697846.1|DBSCAN-SWA
MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSWIEQNYEGRQ
>NZ_CP045956|1731279:1741786|1731279_1732683_+|WP_001144951.1|DBSCAN-SWA
MPVNKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYPADDGIASFKQAFADGQTVVVPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQDGCQVVGEQGGSLHNVTLDVRGSDCVIKGVTMSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQMDGARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERIDCTNGKINWGIGIGLAGSTYDNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPDFSKNAGIDNATIAIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQISSGNIPSFVAITNVRMTRATLELHNQPQHLFLRNINVMQTSAIGPALKMHFDLRKDVRGQFMARQDTLLSLANVHAINENGQSSVDIDRINHQTVNVEAVNFSLPKRGG
>NZ_CP045956|1731279:1741786|1740472_1741786_+|WP_154080197.1|DBSCAN-SWA
MTANNLREQISQLVAQYANEALSPKPFVAGTSVVPPSGKVISAKELQLMVEASLDGWLTTGRFNDAFEKKLGEFIGVPHVLTTTSGSSANLLALTALTSPKLGERALKPGDEVITVAAGFPTTVNPAIQNGLIPVFVDVDIPTYNIDASLIEAAVTEKSKAIMIAHTLGNAFNLSEVRRIADKYNLWLIEDCCDALGTTYEGQMVGTFGDIGTVSFYPAHHITMGEGGAVFTKSGELKKIIESFRDWGRDCYCAPGCDNTCGKRFGQQLGSLPQGYDHKYTYSHLGYNLKITDMQAACGLAQLERVEEFVEQRKANFSYLKQGLQSCTEFLELPEATEKSDPSWFGFPITLKETSGVNRVELVKFLDEAKIGTRLLFAGNLIRQPYFANVKYRVVGELTNTDRIMNQTFWIGIYPGLTTEHLDYVVSKFEEFFGLNF
>NZ_CP045956|1731279:1741786|1736162_1737041_+|WP_000857535.1|DBSCAN-SWA
MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGNDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQSGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMDQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVKGL
>NZ_CP045956|1731279:1741786|1738588_1739362_+|WP_000648783.1|DBSCAN-SWA
MKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQAGQVRSFQEKPKGDGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAPWKTWE
>NZ_CP045956|1731279:1741786|1735215_1736115_+|WP_001023658.1|DBSCAN-SWA
MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALKKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQWELGVKRMLTEMFTTTTI
>NZ_CP045956|1731279:1741786|1739366_1740446_+|WP_000565913.1|DBSCAN-SWA
MIDKNFWQGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLSDLMESHIGDIRDFEKLRNSIAEFKPEIVFHMAAQPLVRLSYEQPIETYSTNVMGTVHLLEAVKQVGNIKAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNSFFNPANYEQHGVGLASVRAGNVIGGGDWAKDRLIPDILRSFENNQQVIIRNPYSIRPWQHVLEPLSGYIVVAQRLYTEGAKFSEGWNFGPRDEDAKTVEFIVDKMVTLWGDDASWLLDGENHPHEAHYLKLDCSKANMQLGWHPRWGLTETLGRIVKWHKAWIRGEDMLICSKREISDYMSATTR

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001144951.1|1731279_1732683_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.0e-21	26.5
WP_000981469.1|1732860_1733754_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697846.1|1734130_1735216_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_001023658.1|1735215_1736115_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000857535.1|1736162_1737041_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-108	65.5
WP_000973709.1|1737041_1737593_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
WP_000018223.1|1737598_1738573_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648783.1|1738588_1739362_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565913.1|1739366_1740446_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.5
WP_154080197.1|1740472_1741786_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	2.7e-51	35.0

Sequences of DBSCAN-SWA_3

Nucleotide sequences of DBSCAN-SWA_3

>NZ_CP045956|2607872:2613225|DBSCAN-SWA
TTCAATGCCTCCTGTAATTATTTGACTCTCTCACCGAATCATATACTCGTTCACACGTCATTCCTGCCCGGTAGCGCTCGTCAGCGATTCCAGCATAATGTTTAGCTTCTTCTGCAATATCTCCGAGCATGTTGGCAAGCATTCTGGCGTCGGCGTTGGTTGTTTTGCTTCTGACGGCAGCGGCAAGATTTGCGGTGTGCTTTGCGGCGTCCAGGCGGGTGGCAAGTTTTTTTGCTTCGGTACGCAGCTGGCTAACAGTGGCAGACAGGCCAGCAGCAGTGGCAGCAGATTTAGCGGCTTGCGCTTGTGCATCTTTCACAGCCTCATCACGGGCAATAACGCGGCCCTGTTCAATAATACGGGCGGCGGTCTGGGCGTTGACTTCCTGAGAGGATTCAGCGCTGTCGCGATCTGCCCATTTTTTTTGCCAGCCCCTGTCACTCCAGACATTACCGGCGATAAACGCACCAGCCATCAGCAAAATAAACACCAGCTGCAACCAGTATCTTTTCAGAAGAGCAGATAACAGATTCATACCAGCACCGATTTTGCTTTCTCAAAGCGCTCCCGCCGATCACCGATGCCGTTCTACCCTCCGTTGATGATCTGCGTAACACGTACCAGGTCGCCGGAATATTTCAGACACCCTTTAGTCACAAAAAGCCACGCTGCGGATCGGGCGGCATGACGTTCTAGCTCAAGCTGTCCTGGATTCGCCACTAGATCCAGTTTCAGTGCAACGCCACATCTGGTGTAATTCTCCAGCCCGGTAATCCTGATCTTCGCCGAACGTGGTGCGAAAGCTTTCTTGCCGTTCATGGCATTCGCGATCCGGACTGGTACGAATATGTGCCTGATAACACCCCAACAACCCATGAAGAAAATGCAGCAAGGCTTAGTCAGGCGGGCAAATGTCTGCGGGATATTGAGGCAGGGAGATTTCAGTGTGATGAAGAAAAACAGCAACCGACAGGCGAACTGGCAGATGAACCAGCAACGCCTGAAGCAGTGGAACAGGACACAACTGAACATCATCCGGACCCACAGCCGCTGGAGAATGAACCACCTGTAAGCCAGACAGAAGCAGGCTACCAGAAAATACGGGCAGAACTGCACGAAGCACGTAAAAACATTCCACCCAAAAACCCGGTTGATGTTGGTAAACAACTGGCAGCCGCGCGCGGTGACTATGTCGAAGACATCAGCGACCCGAACGATCCGAAGTGGGTTCATAACAATTACAGCGCCTCAAATCAGGGTGAAAAAGAAGAAGTGGTGCCGGAGGAAAAACAACCAGCAGCAGAGCCGGAGGCTGTCACCAGAAACGCGGACGGGACTTTCGATGTATCAGCGCTATTCCCGCCCCCCTCAAACCAGACCGAAAAAACGGAAGCCAGAACAGAAAGAGATGGAGAAACGCCGAAAGAGAACAACCAGCAGGAAACGGCTGGCGATACAGGGCAGGAAATTACAACGGACGGTGGATCAGGTACTGGCGGTGATGAAGCTGGCGAAGCGGCAGATCCCGTAGAAAACGGAAATTTCACTGTCCCTGATGATATACAGCCAGGCATTTACTATGACATCCCTAACGAGGCGTATCACGCTGGCCCGGGGGTCAGTAAATCACAGCTTGATGATATCGCAGATACACCAGCAATTTATCTTTGGCGCAAAAATGCCCCCGTGGACACGGAGAAAACAAAGTCTCTCGATACAGGAACGGCTTTTCACTGCCGGGTACTGGAACCAGAGGAATTCAGTAAACGCTTCATCATCGCACCGGAGTTTAACCGCCGTACCAGTGCAGGAAAAGAAGAAGAGAAAACCTTTCTGGAAGAGTGCGCCCGGACAGGAATAACCGTGCTTACGGCAGAAGAAGGCCGGAAAATCGAACTTATGTACCAGAGTGTGATGGCGTTACCGCTGGGGCAGTGGCTGGTTGAAAGCGCCGGATATGCTGAATCATCAGTCTACTGGGAAGATCCGGAAACAGAAATTTTGTGTCGGTGCCGTCCGGACAAAATCATCCCTGAATTTCACTGGATCATGGATGTGAAAACCACTGCTGATATCCAGCGGTTCAGGACAGCTTATTACGACTATCGCTACCATGTACAGGACGCTTTCTACAGCGACGGTTATCGGGCGCAGTTCGGTGAGATACCCACCTTCGTCTTCCTTGTTGCCAGTACAACCGCCGAATGTGGGCGTTACCCGGTTGAGATTTTCATGATGGGTGAAGACGCAAAACTGGCAGGTCAGCGGGAATATCGTCGCAATCTGCAAACCCTGGCCGAATGCCTTAATAACGATGAATGGCCTGCCATTAAAACTTTATCACTGCCCCGCTGGGCGAAGGAGAATGCAAATGCCTAAACAGCCACCTATTGCAAAAGCCGACCTGCAAAAAACACAGGGAGCACGCACCCCGACGGCAGTGAAAAATAACAACGATGTGATCAGCTTTATCAACCAGCCTTCCATGAAAGAACAACTGGCGGCGGCGCTGCCCCGCCACATGACAGCGGAACGCATGATCCGGATAGCCACAACGGAAATCCGAAAAGTTCCGGCGCTGGGTGACTGTGACACCATGAGTTTTGTCAGCGCCATCGTTCAGTGTTCCCAGCTTGGGCTGGAGCCCGGCGGCGCGCTCGGTCATGCCTATCTGCTGCCGTTCGGAAACAAAAACGAAAAGTCAGGCAAAAAAAACGTTCAGTTAATTATTGGCTACCGGGGAATGATCGACCTTGTCCGCCGTTCCGGACAGATTGCAAGTCTTTCCGCACGCGTCGTCCGCGAAGGTGACGATTTCAGCTTCGAGTTTGGTCTGGAAGAGAAGCTGGTACACCGTCCGGGTGAGAACGAAGATGCACCGGTTACTCATGTCTATGCCGTTGCCCGCCTTAAAGATGGCGGCACACAGTTTGAGGTAATGACCCGTAAACAGATAGAGCAGGTCCGGGCACAGAGCAAAGCCGGTAACAACGGCCCGTGGGTGACTCACTGGGAGGAAATGGCAAAAAAAACCGCCATACGCCGCCTGTTCAAATACCTGCCTGTATCCATTGAGATCCAGCGCGCGGTATCAATGGACGAAAAGGAGACGCTGACTATCGATCCGGCTGATGCGTCTGTCATCACAGGTGAATACAGCGTCGTCGAAAACGCTGGCGTGGAAGAGAACGTGACCGCATAACGGAGGCTGGCGGTCGCTGACCGCCTGAAATGAAGGTGCTTTATTAATGTACAAATATAGAATAACCGCCATCGTCAAAAAGCCGGGTAATTCCCCGACAAACTGGGTTCGTTTTTCTGACAAAAAAATGAATAAAGCCGAGTGTGAAAAAATGCTGTCCGGCAGAACTGAAGCCGGAAAATCACGCGAAGAGAAAGTCACGCTGGAAGAGTTTAAATGTATTAAGGAATAAAGATCGCCTGCTGAATAATTAATTAACCGTAAAAATGCTTTTAAACACCGCTCACGCGGCGGGATTCGTACAGCCTGAATGAGGGAGGTAATTGCAGCATGAAGAAGCCTGTCTGTATGTTCTGCGGCGCCCCGGCCACCCTGCTTTGTGACGGGAGCATAGGCTGGGATGCCGATGAGGATGAACACGGGCACATGACAAAATGTCGAGCCATGTTCACCTGCGATGCGCCCGTGTGCCGGAACTGCGCTATATGGCATGGCAACATATTTTTCGATGGAAAGATCCGGATGATGGATACACGCGACCTTTGCCCCCTGTGCCAGAAGTTACACGAAGCCGGCGAATCCATACGCGTTGCAGACCACCGGAAAAACTCCGCTCTGCCGCAACCCTGCCTGACTGAAGAGCAAGCTGACAGGATACGCGCCGCACATTGGGCAGGATTTACAGGACGGCGCTCCGGAGATGTAAAAGTTGTACCGGGCGGCGGTCAGCAGTCCTTTAAATTTTACCCTGATCATTGATGTTCAACCCTGACCGACCGCCACACCGTATAGTTGGCGGCGGTCATGAAGTAAAGAGACATGACTATGAGCTTTGTGAGACTTGAAACCTGGGGTGAATTAAATTATCCCGATGATCCACCACCTCTCACAACACTAAGACGATGGGCGCGAAACGGAAATATTTACCCGACTCCAATATTACATGGCAGGACGTATCGGGTTGATCCGGACGCGTTTTATATCAAGCCGAATAAAGTGGGACTGGTGCTTGAACAGCACCACCCAAACGGGCGCACCGGAAAACCGAGTGCATTGCTGGAGAAGTTGATCAGTGAGTCGAAAAAAGTACGATGCTAACCTTCCGAGGAACCTCACCTACCGTAAGGCCAGTAAATCTTTTTTCTGGCGTAACCCGGTAACTGACAAGGAATTTCCGCTCGGTCAGATCGCCCGCAGGGACGCTATCACACAGGCCATAGAGGCAAACAACTTCATAGCGCAAAACCACACGCCAGTGGCGCTTATTGAAAAGCTAAAAGGAACTGACTCATTCACTGTGTCCGCATGGATTGATCGCTATGAGGTTTTATTACAGCGCCGGAGTCTGTCGGTTAATACCTACAAGATTCGCGGTAATCAATTAGCGACCGTACGCGAAAAAATGGGGGAAATAATACTGGCAGAAGTAACAACTAGGCACATTGCCAAGTTTCTTGAGTCGTGGATAACCGAGGGAAAAAACACTATGGCGGGAGCAATGAGATCAGTTCTATCTGACATGTTCAGAGAGGCTATTGTCGAAGGGCATATTGTGAAAAACCCGGTGGAAGCAACCCGGATACCAGAGATTAAGGTGGCCAGGGAACGCCTGCAACTGGAAACGTATAACGCCACACGAGCGGCAGCAGAGCATATGCCTGCATGGTTCCCTCTCGCGATGGATTTAGCGCTCGTTACTGGTCAACGTAGGGAGGATATCGTAAATATGAAATTTAGTGATGTTTTTGACAACCGCTTATACGTAACTCAGATTAAAACCGGAATGAAAATAGCCATTCCCCTCTCCCTGACACTTCGGGCGACGGGGTTACGTCTGGGAACGGTAATCGATCGCTGCCGACTGGTAAGCCGCACTGATTTCATGATCAGTGCCGGAATCAGGAAAAATAGCCCAACCGGGAATATTCATCCGGATGGATTGACAAAGACATTTGTAAAAGCAAGAAAAGCCTCCGGTGTTAACTTCAGCAATAATCCACCGACATTTCACGAGATCCGAAGTCTGGCCGGGCGGCTGTACAAAAACGAGCACGGCGAGGTGTTCGCCCAAAAACTCCTGGGCCACACATCAGCGAACACCACGAAACTCTATCTCGATGAGCGTGATGATAAAGCTTATATGATGCTCTAA

Protein sequences of DBSCAN-SWA_3

>NZ_CP045956|2607872:2613225|2608459_2608690_-|WP_001013467.1|DBSCAN-SWA
MNGKKAFAPRSAKIRITGLENYTRCGVALKLDLVANPGQLELERHAARSAAWLFVTKGCLKYSGDLVRVTQIINGG
>NZ_CP045956|2607872:2613225|2610242_2611073_+|WP_154080256.1|DBSCAN-SWA
MPKQPPIAKADLQKTQGARTPTAVKNNNDVISFINQPSMKEQLAAALPRHMTAERMIRIATTEIRKVPALGDCDTMSFVSAIVQCSQLGLEPGGALGHAYLLPFGNKNEKSGKKNVQLIIGYRGMIDLVRRSGQIASLSARVVREGDDFSFEFGLEEKLVHRPGENEDAPVTHVYAVARLKDGGTQFEVMTRKQIEQVRAQSKAGNNGPWVTHWEEMAKKTAIRRLFKYLPVSIEIQRAVSMDEKETLTIDPADASVITGEYSVVENAGVEENVTA
>NZ_CP045956|2607872:2613225|2611892_2612171_+|WP_154080257.1|DBSCAN-SWA
MTMSFVRLETWGELNYPDDPPPLTTLRRWARNGNIYPTPILHGRTYRVDPDAFYIKPNKVGLVLEQHHPNGRTGKPSALLEKLISESKKVRC
>NZ_CP045956|2607872:2613225|2607872_2608406_-|WP_001050883.1|DBSCAN-SWA
MNLLSALLKRYWLQLVFILLMAGAFIAGNVWSDRGWQKKWADRDSAESSQEVNAQTAARIIEQGRVIARDEAVKDAQAQAAKSAATAAGLSATVSQLRTEAKKLATRLDAAKHTANLAAAVRSKTTNADARMLANMLGDIAEEAKHYAGIADERYRAGMTCERVYDSVRESNNYRRH
>NZ_CP045956|2607872:2613225|2612145_2613225_+|WP_022742740.1|integrase|DBSCAN-SWA
MSRKKYDANLPRNLTYRKASKSFFWRNPVTDKEFPLGQIARRDAITQAIEANNFIAQNHTPVALIEKLKGTDSFTVSAWIDRYEVLLQRRSLSVNTYKIRGNQLATVREKMGEIILAEVTTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERLQLETYNATRAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLRATGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPPTFHEIRSLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDKAYMML
>NZ_CP045956|2607872:2613225|2611119_2611305_+|WP_000280164.1|DBSCAN-SWA
MYKYRITAIVKKPGNSPTNWVRFSDKKMNKAECEKMLSGRTEAGKSREEKVTLEEFKCIKE

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001050883.1|2607872_2608406_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
WP_001013467.1|2608459_2608690_-	hypothetical protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
WP_154080256.1|2610242_2611073_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	2.2e-104	71.6
WP_000280164.1|2611119_2611305_+	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	2.9e-12	59.6
2611326:2611339	attL	NA	NA	NA	NA
WP_154080257.1|2611892_2612171_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.8e-10	37.5
WP_022742740.1|2612145_2613225_+|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.3e-101	52.8
2618132:2618145	attR	NA	NA	NA	NA

Sequences of DBSCAN-SWA_4

Nucleotide sequences of DBSCAN-SWA_4

>NZ_CP045956|2918588:2925901|DBSCAN-SWA
TTTGCATAAGTATCTCTCGGTAGTAAAAAAGCACCGAGTTCCTCTGTCTGATGCTGCTGTTGATTTGTTAAAAGATTTACCACGATTAAAAGATAACAATCATGTATTCCCTGCCCCTCGCGCTGAAACACTTTCTGATATGTCGTTATTGGCTGTATTGAAACGAATGGGATATATCGACTTAACGCAACATGGCTTCCGTTCTACTTTCCGTGAGTGGGCTGGTGAAGCAACGGATTATCAACGTGAGGTTATTGAACATGCGTTGGCGCACCAGTTGGCAGATAAGGCTGAAGCAGCGTATCAGCGTGGGACGTTATGGCCTAAACGGGTGGCGTTGATGGATGATTGGACGGGGTATAGCACTGCCAACAGCTAAGCTACCTGTACGAAAGCATTATCGTTGATAACAACGTAGAAAGTGTGATGCTAATAGCATTCGCTTTCGAAAATGTGATAAGTAATAATTTCATACTGAACTATTTCTTATATAATTATTATCATAATTTGCAAATTACATAACCCACTCAAGGAGAGGTTATGCCCGGACTGATAGGCTACTGGAAGCAACTTCCCACCAAAGATGAATATATTAAAAAACACAATATGAGCAAAATATCCTGCTACAGTTGTGGTCACGAGAAATTCAGCGATGTTGGTTTGATACAGGTATGGGATAATCACAGAAGAATTCTTTGTGCTAAGTGTAAGACTACTCTTTTCAGAGAAGAGGATTAGTTTTTTTGGCATTGGTAACAGCGGCTTCAGCATCCCTTTTCACGCAGCGGGTCGGGCTTTTTTTTCGCATTTGACCCGTCGATTACCGGATGATGACGCAATTTACAAGCGCCTTGTCCGCCTACCGCGAGCACAACGCCATCAGGCTAACTATTAGCTGGCGTAAAAAAACCGGGCGCTAAGGCCCGGTTTGTACGGCAGTGAAACGAAGATTAATGCGCGGCTTCCGGCTTGTGCTTTTGCGCACTCTGGAAGTCATACGTCAACGCATTTTTCTCTTTATCCAGCGCGACGGTGACCTGTCCGCCGTCAACCAGCGATCCAAACAGCAACTCATTGGCCAGCGGTTTTTTCAGGTTATCCTGAATTACACGCGCCATCGGTCGTGCGCCCATCGCCCGGTCATAGCCCTTTTCCGCCAGCCAGTCGCGCGCTTCCTGACTGACTTCCAGGGAGACGCCTTTCTGATCCAACTGAGCCTGCAACTCGACGATAAACTTATCGACAACCTGATGAATCACCTCGCCAGACAGATGATCGAACCAAATAATGTTGTCGAGACGGTTACGGAACTCCGGCGTAAACACTTTCTTGATCTCGCCCATCGCATCGGTACTGTTGTCCTGATGAATAAGACCAATAGATTTACGTTCGGTTTCTCGCACGCCAGCGTTGGTGGTCATCACCAGCACCACGTTGCGGAAATCCGCCTTGCGGCCGTTGTTATCGGTCAGCGTACCGTTATCCATCACCTGCAGCAGCAGGTTAAAGACATCCGGGTGCGCTTTTTCGATCTCATCCAGCAACAGCACCGCATGAGGATGCTTAATCACCGCATCCGTCAGCAGCCCGCCCTGGTCGAAACCGACGTATCCCGGAGGTGCGCCGATCAAACGGCTCACCGTATGACGCTCCATATATTCAGACATATCGAAGCGCAACAGCTCAATACCCAGCGCTTTTGAAAGCTGTACCGTAACTTCAGTTTTCCCTACGCCAGTTGGCCCGGCGAACAAGAATGAGCCGACAGGTTTATGCTCATGGCCCAGACCCGCACGACTCATCTTAATAGCTTCGGTCAGCGCCTCAATCGCGTTATCCTGGCCGAAGACCAGCATTTTCAGACGATCGCCCAGGTTCTTCAGCGTATCGCGATCGCTCTGCGAGACGCTCTTTTCAGGAATTCGCGCAATTCGCGCCACTACGGACTCAATATCCGCCACGTTGACCGTTTTCTTACGTTTGCTCACCGGCATCAGACGCGCCCGAGCGCCCGCTTCGTCAATCACGTCAATGGCTTTATCCGGCAGATGGCGGTCATTGATATATTTTACCGCCAGCTCGACCGCCGCACGCACCGCTTTCGCGGTATAACGCACGTCGTGGTGCGCTTCGTACTTAGGTTTCAAGCCGTTGATAATTTGCACCGTCTCTTCCACCGAAGGCTCGGTAATATCAATTTTCTGGAAACGGCGCGCTAATGCGCGGTCTTTCTCAAAAATATTGCTGAATTCCTGATAGGTCGTTGAGCCGATCACCCGGATCTTGCCGCTGGAAAGCAGCGGTTTAATCAGATTTGCCGCATCCACCTGTCCGCCCGACGCCGCGCCAGCGCCGATAATGGTATGGATTTCATCGATAAACAGGATGCTGTTGGTATCCTGCTCAAGCTGTTTCAGCAACGCCTTAAACCGTTTTTCAAAATCGCCACGGTATTTGGTGCCCGCCAGCAGCGAACCGATATCCAGAGAGTAAATGGTGCAATCGGCCATCACTTCCGGCACATCGCCCTGCACGATACGCCAGGCCAGCCCTTCGGCAATCGCCGTTTTGCCGACGCCGGATTCCCCTACCAGCAACGGGTTATTTTTACGGCGACGACACAAGACCTGGATCGCGCGTTCCAGTTCTTTTTCACGACCAATCAGCGGATCGATGCCGCCCACGCGAGCAAGTTGGTTAAGATTCGTCGTGAAGTTTTCCATACGTTCCTCCCCGCCAGCTTGTTCGTCGCCAGTTGGCTGATTGCCGAGATCGGAAGATTGGCTCGGTTCGTCTTTTCGCGTCCCGTGAGAAATAAAGTTCACGATATCCAGACGGCTCACTTCATGCTTGCGCAGCAGATAAGCGGCTTGTGATTCCTGTTCGCTAAAGATAGCCACCAGCACATTCGCGCCAGTCACTTCACTACGCCCGGAAGACTGAACATGGAAGACGGCACGTTGCAGGACACGCTGGAAACTTAACGTCGGCTGCGTATCACGCTCTTCTTCACTGGCAGGCAGTACGGGTGTGGTTTGTTCAATGAAGGCTTCGAGTTCCTGACGGAGCGCCACCAGATCCACGGAGCATGCTTCCAGCGCTTCGCGAGCCGATGGGTTGCTGAGCAGCGCCAGCAACAGATGCTCGACGGTCATAAACTCATGACGGTGCTCGCGCGCTCTGGCGAAAGCCATGTTTAAACTGAGTTCCAGTTCTTGATTGAGCATAGGCACCTCCCCCAATTTTTATACCTGCATTCAGGCTTTTTCCAGCGTACACAGCAACGGATGCTCGTTCTCCCTTGCATACTTGTTCACCATCGCCACTTTGGTTTCCGCCACCTCGGCGGTAAACACGCCGCAGATAGCTTTGCCTTGATAGTGAACTGCAAGCATCAATTGCGTTGCACGTTCTACATCATAAGAAAAGAATTTTTGTAACACGTCAATAACAAACTCCATCGGAGTGTAGTCATCATTGACTAATATCACTTTATACATAGATGGCGGTTTTAGCGCGTCGCGCACGCTATCTTCCACCAACTGGTCAAAATCCAGCCAATCGTTCGTCTTACCCATTGTCAGTCGTCATTATCGGTTACGGTTGTCGGCAGGAAAATCTGCCGCTGACCAGAGTCTATGCACACAATCAATCTACCTCAATTGATAGATAACTAACATCTATCAGTACCATCCGCGACATCTGTCACATTCCCGGCAATAGCGTTAACTGCTTCAAATTTTTGATTCATTTTTACCCGATCCCCCCTGCCTGATGCTTGACGCCTCGCCTGATTTCTCTAAATTGTAATGTCGAGAGTTGGTGAGGTTTTGAACAGCCCCCACTCCGTCACCGGTTCATTCCATCTTACTTATATAAGATTTACGAAGGATGTCGAAGCATGGAAACGGGTACTGTAAAGTGGTTCAACAATGCCAAAGGGTTTGGTTTCATCTGCCCTGAAGGCGGCGGCGAGGATATTTTCGCCCATTATTCCACCATTCAAATGGATGGTTACAGAACGCTTAAAGCCGGACAGTCTGTCCGGTTTGATGTCCACCAGGGGCCAAAAGGCAATCACGCCAGCGTCATCGTGCCCATCGAAGCAGAGGCCGTTGCATAGCTCCTCTGTCTCATTGTGTACATCCAGGAGGCAAAATGCCAGCCCGATCGGCTGGCATTTTTATTTAACGCCAGTTCCTGATAGCAACACTGTTGCATCTTATCAGGCCGACAAATGACGTCAGCAAGATTACTCCCTTGCCAGCGCATCCACCGGGTCCAGTCGCGCCGCGTTTCTCGCCGGTAGCCAGCCAAACAGTATCCCGGTAAACGTCGAACATAAAAACGCGCTCGCCAGCGCAGTCAGTGAAAAACCGATCTCCCAGCCGGGCAGGAAAAGCTGTAGCATAAATGCGATGAACATCGACAAGCTAATCCCCAGCGCTCCCCCAACCAGGCAAACCAGCACCGCTTCAATAAGAAACTGCTGTAGCACATCGCTGGCGCGCGCGCCTACCGCCATACGGATGCCGATTTCACGCGTTCGCTCGGTGACGGAAACCAGCATAATATTCATAACGCCAATGCCGCCGACAACCAGCGAAATGACGGCCACCAGCGTCAGAAATAACTGAAGAGTATAGGTGGTTTTTTCAGCCGTTTTCAGAACGCTGTCCATATTCCAGGTGAAGAAGTCTTTTTTACCGTGGCGTAAGGTGAGCAGGCGGGTAAGCTGCTGTTCAGCCTGATCGCTATCAACGCCATCTTTCACACGAACGGTGATCGAGTTAAGCCATGACTGACCCATTATACGATCTGACATCGTGCTATAGGGCAACCAAACTTGCAACAGATTGCTATTGCCGTACATGGACGGTTTCTCTTCCGCCACGCCAATAACAATAACCGGCATATTACCCGCCAGCACCACTTCCCCTACGACATTCGCTTTATTTGGAAATAGCTGGCGTCGCGTGTTGGCATCCAGCACCACCACCTGCGCGCGATCCTGTTGCTGTACAGCATTGAAGGTGTTCCCCTCCCTAAAGGACATGCCGTAAACGTTAAAATAATCGCCACTGACGCCATTAGCATTTACGGCAATATCAATATTGCCATAGCGAAGACGTAAGCTCTTTGAAACGCTGGGCGTCGCAGAGTTAACCCACGGCTGTTTCTGAATAGCGACCAGATCGTCATATTTCAGCGCCTGTCGATACTGCGGGTTGTCGTCGCCGAAATCTTTGCCTGGATGAATATCAATCGTATTAGTGCCCATAGCGCGGATATCCGCCAGTACCATCTGTTTTGCGGCGTCGCCGACCACCACAATCGACACCACCGACGCAATACCGATAATAATTCCCAGCATGGTCAGTAAAGTACGCATTTTGTTAGCGGCCATCGCTAACCACGCCATTGACAGCGCTTCGCGAAAGCTGCTGGCAAATTGCCGCCAGCCGGGAGCCGTATTAACTACGGCAGCGTCAACGCCCTGTTCGCGTTTCTTTTCCTCCGCGGGCGGATTATGGACAATCTTGCCATCGTGAATTTCAATAATCCGCTCCGCCTGGGCGGCAATCAGCGGATCGTGCGTCACAATGATCACCGTATGTCCGCGATCGCGCAGTTGGCGCAAAATCGCCATCACCTCTTCGCCGGAATGGCTATCCAGCGCGCCGGTCGGCTCATCTGCCAGAATCACCTGTCCACCGTTCATCAGAGCGCGGGCAATACTGACACGCTGCTGCTGTCCGCCAGAAAGCTGTGAAGGTGGGTAATCGACGCGATCGCTTAATCCCAGCCGCAAAAGCAACTCTCTGGCGCGCGCCTGGCGTTTTTTGCGTTCAATGCCGGCGTAGACGGCGGGGATTTCAACATTTTGCGCTGCCGTTAAATGCGACAACAGATGGTAGCGCTGAAAGATAAAGCCAAAATGCTCACGCCGCAGCTGCGCCAGCGCGTCCGGGTCCAGCGTCGAGACGTCCCGCCCCGCCACCCGATAAGTGCCGCTGGTCGGTTTATCCAGGCACCCGAGGATATTCATCAGCGTTGATTTTCCAGAACCGGAAACGCCGACGATCGCCACCATCTCCCCGGCGTGGATTTGCAGGGAGATATCTTTCAACACCGCCACCTGCTCTTCTCCGGAGGGGTAGCTACGACTCACATTGCACAGTTCAAGCAATGCCGTCATGGCGTCGCTCCTGGCCTGCTTTCGCCGATGATCACCTCATCGCCCGCTTCCAGACCTTTAACCACTTCCACGTCTGTATCGTTACGCTCGCCAATGACCACTTCGCGCTCACGTTTTTCGCCGTTACGCAACAGCGCCACTTTATAACGATTGCCGCCCACCGGTTCGCCAAGCGCGGCGAGAGGAATAATCAGCACATTTTTGACATCCATGAGTTGAATATAAACCTGTGCGGTCATATCAAGACGCAAGATTCTTTTGGGATTCGGCACTTCAAACCGGGCGTAATAAAAAATAGCGTCGTTGATCTTTTCCGGCGTCGGCAGAGTATCTTTTAAAACGCCTTCATAGCGCGTTTGCGGATCGCCTGCAATGGTGAACCATGCTTTCTGCCCCGCCCGAAGATGGATCACGTCCGCTTCCGAGACCTGCGCTTTTACCAGCATGGTGCTCATATCCGCCAGCGTCAGAATATTGGGCGCCTGCTGAGCTGCAATCACCGTTTGTCCTTGCAGGGTAGTGATTTGCGTCACTTCCCCCGCCATGGGGGCGACAATACGGGTATATTCCAGGTTGGTTTTCGCGGTGTCCAACGAGGCCCGATTACGTTTGATCTGGGCATCTATGGTGCCAATACGCGCCTGTTTAACCGCCATCTCCGTCGCCGCGGTATCCAGATCCTGTTGCGATACCGCCTGAGTCTTAGCTAACTGCTGCTGGCGCGCCAGCGTAACCCGCGCCAGCTTTAACTCAGCGGCTGCCTGCTGACGCTCCGCGTTCAGCTCCATCAAGGTGGCCTCGACCTCTTTTATCTGGTTCTCCGCCTGATCTGGGTCAATCACGCCGAGTAGCTGATCTTTTTTAACGTTATCGCCAATGGAGACCAGCAGCGTTTTCAACTGGCCGCTCACCTGCGCGCCGACATCCACTTTACGCAACGCGTCCAGTTTTCCAGTCGCCAGTACACTCTGTTCAAGATCGCCTGGCCGCACGATTAATGTCTGATAAGTTGGCAGCGGGGCATTTATCATTCGCCAGCCAGCCATCCCCCCCACTAAAAGAATTAAAATAATGACCAGATAACGCTTTTTAAATTTCTTTCCCTTAGCACGCAT

Protein sequences of DBSCAN-SWA_4

>NZ_CP045956|2918588:2925901|2924782_2925901_-|WP_154080282.1|DBSCAN-SWA
MRAKGKKFKKRYLVIILILLVGGMAGWRMINAPLPTYQTLIVRPGDLEQSVLATGKLDALRKVDVGAQVSGQLKTLLVSIGDNVKKDQLLGVIDPDQAENQIKEVEATLMELNAERQQAAAELKLARVTLARQQQLAKTQAVSQQDLDTAATEMAVKQARIGTIDAQIKRNRASLDTAKTNLEYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLRAGQKAWFTIAGDPQTRYEGVLKDTLPTPEKINDAIFYYARFEVPNPKRILRLDMTAQVYIQLMDVKNVLIIPLAALGEPVGGNRYKVALLRNGEKREREVVIGERNDTDVEVVKGLEAGDEVIIGESRPGATP
>NZ_CP045956|2918588:2925901|2919127_2919325_+|WP_001117984.1|DBSCAN-SWA
MPGLIGYWKQLPTKDEYIKKHNMSKISCYSCGHEKFSDVGLIQVWDNHRRILCAKCKTTLFREED
>NZ_CP045956|2918588:2925901|2922488_2922710_+|WP_000447499.1|DBSCAN-SWA
METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASVIVPIEAEAVA
>NZ_CP045956|2918588:2925901|2921844_2922165_-|WP_000520789.1|protease|DBSCAN-SWA
MGKTNDWLDFDQLVEDSVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP045956|2918588:2925901|2919537_2921814_-|WP_000934063.1|protease|DBSCAN-SWA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDIVNFISHGTRKDEPSQSSDLGNQPTGDEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDNAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMGEIKKVFTPEFRNRLDNIIWFDHLSGEVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNALTYDFQSAQKHKPEAAH
>NZ_CP045956|2918588:2925901|2922839_2924786_-|WP_000125871.1|DBSCAN-SWA
MTALLELCNVSRSYPSGEEQVAVLKDISLQIHAGEMVAIVGVSGSGKSTLMNILGCLDKPTSGTYRVAGRDVSTLDPDALAQLRREHFGFIFQRYHLLSHLTAAQNVEIPAVYAGIERKKRQARARELLLRLGLSDRVDYPPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILRQLRDRGHTVIIVTHDPLIAAQAERIIEIHDGKIVHNPPAEEKKREQGVDAAVVNTAPGWRQFASSFREALSMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRAMGTNTIDIHPGKDFGDDNPQYRQALKYDDLVAIQKQPWVNSATPSVSKSLRLRYGNIDIAVNANGVSGDYFNVYGMSFREGNTFNAVQQQDRAQVVVLDANTRRQLFPNKANVVGEVVLAGNMPVIVIGVAEEKPSMYGNSNLLQVWLPYSTMSDRIMGQSWLNSITVRVKDGVDSDQAEQQLTRLLTLRHGKKDFFTWNMDSVLKTAEKTTYTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGISLSMFIAFMLQLFLPGWEIGFSLTALASAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP045956|2918588:2925901|2918588_2918966_+|WP_001539594.1|integrase|DBSCAN-SWA
MHKYLSVVKKHRVPLSDAAVDLLKDLPRLKDNNHVFPAPRAETLSDMSLLAVLKRMGYIDLTQHGFRSTFREWAGEATDYQREVIEHALAHQLADKAEAAYQRGTLWPKRVALMDDWTGYSTANS

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2913385:2913399	attL	NA	NA	NA	NA
WP_001539594.1|2918588_2918966_+|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
WP_001117984.1|2919127_2919325_+	hypothetical protein	NA	NA	NA	NA
WP_000934063.1|2919537_2921814_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1|2921844_2922165_-|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1|2922488_2922710_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125871.1|2922839_2924786_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
2924637:2924651	attR	NA	NA	NA	NA
WP_154080282.1|2924782_2925901_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9