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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046009 Escherichia coli strain 1919D62 chromosome, complete genome 7 crisprs csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas3,DEDDh,c2c9_V-U4,DinG 0 10 9 0
NZ_CP046008 Escherichia coli strain 1919D62 plasmid p1919D62-2, complete sequence 0 crisprs DEDDh 0 0 1 0
NZ_CP046007 Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP046009
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046009_1 626374-626491 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046009_2 1065141-1065413 Orphan I-E
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046009_3 1093805-1094017 TypeI-E I-E
3 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046009_4 2158569-2158692 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046009_5 2826781-2826872 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046009_6 3361609-3361718 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046009_7 3871437-3871572 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046009_5 5.1|2826807|40|NZ_CP046009|CRISPRCasFinder 2826807-2826846 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
NZ_CP046009_7 7.1|3871457|43|NZ_CP046009|PILER-CR 3871457-3871499 43 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141084-141126 0 1.0
NZ_CP046009_4 4.1|2158612|38|NZ_CP046009|CRISPRCasFinder 2158612-2158649 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP046009_2 2.3|1065292|32|NZ_CP046009|CRISPRCasFinder,CRT 1065292-1065323 32 CP054922 Streptomyces sp. NA03103 plasmid unnamed2, complete sequence 68158-68189 6 0.812
NZ_CP046009_2 2.7|1065294|32|NZ_CP046009|PILER-CR 1065294-1065325 32 CP054922 Streptomyces sp. NA03103 plasmid unnamed2, complete sequence 68158-68189 6 0.812
NZ_CP046009_3 3.1|1093836|30|NZ_CP046009|PILER-CR 1093836-1093865 30 NZ_CP016482 Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence 17517-17546 7 0.767
NZ_CP046009_3 3.3|1093835|31|NZ_CP046009|CRISPRCasFinder,CRT 1093835-1093865 31 NZ_CP016482 Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence 17516-17546 7 0.774
NZ_CP046009_6 6.1|3361649|30|NZ_CP046009|CRISPRCasFinder 3361649-3361678 30 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 87167-87196 8 0.733
NZ_CP046009_2 2.2|1065231|32|NZ_CP046009|CRISPRCasFinder,CRT 1065231-1065262 32 MN692948 Marine virus AFVG_117M19, complete genome 51093-51124 9 0.719
NZ_CP046009_2 2.6|1065233|32|NZ_CP046009|PILER-CR 1065233-1065264 32 MN692948 Marine virus AFVG_117M19, complete genome 51093-51124 9 0.719
NZ_CP046009_2 2.2|1065231|32|NZ_CP046009|CRISPRCasFinder,CRT 1065231-1065262 32 MN693666 Marine virus AFVG_250M158, complete genome 33511-33542 10 0.688
NZ_CP046009_2 2.6|1065233|32|NZ_CP046009|PILER-CR 1065233-1065264 32 MN693666 Marine virus AFVG_250M158, complete genome 33511-33542 10 0.688
NZ_CP046009_6 6.1|3361649|30|NZ_CP046009|CRISPRCasFinder 3361649-3361678 30 NZ_CP010990 Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence 173412-173441 10 0.667
NZ_CP046009_6 6.1|3361649|30|NZ_CP046009|CRISPRCasFinder 3361649-3361678 30 NZ_CP012186 Pseudonocardia sp. EC080619-01 plasmid pBCI1-1, complete sequence 110091-110120 10 0.667

1. spacer 5.1|2826807|40|NZ_CP046009|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 7.1|3871457|43|NZ_CP046009|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttcc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttcc	Protospacer
*******************************************

3. spacer 4.1|2158612|38|NZ_CP046009|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 2.3|1065292|32|NZ_CP046009|CRISPRCasFinder,CRT matches to CP054922 (Streptomyces sp. NA03103 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

--tttcagcagttcagcgtaacaccgacggtcac	CRISPR spacer
gccttccgc--ttcaccggaacaccgacggtcac	Protospacer
  .*** **  **** ** ***************

5. spacer 2.7|1065294|32|NZ_CP046009|PILER-CR matches to CP054922 (Streptomyces sp. NA03103 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

--tttcagcagttcagcgtaacaccgacggtcac	CRISPR spacer
gccttccgc--ttcaccggaacaccgacggtcac	Protospacer
  .*** **  **** ** ***************

6. spacer 3.1|1093836|30|NZ_CP046009|PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.767

gcttctgcctaatatcaaaaccccagctac	CRISPR spacer
acttccgcctaatatcaaaacccaaggcgt	Protospacer
.****.***************** ** ...

7. spacer 3.3|1093835|31|NZ_CP046009|CRISPRCasFinder,CRT matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.774

gcttctgcctaatatcaaaaccccagctacc	CRISPR spacer
acttccgcctaatatcaaaacccaaggcgtc	Protospacer
.****.***************** ** ...*

8. spacer 6.1|3361649|30|NZ_CP046009|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.733

tggtgcaccgattgctggatgcggcaccgg	CRISPR spacer
tcgtgcaccgaatgccggatgcggcgtgaa	Protospacer
* ********* ***.*********.. ..

9. spacer 2.2|1065231|32|NZ_CP046009|CRISPRCasFinder,CRT matches to MN692948 (Marine virus AFVG_117M19, complete genome) position: , mismatch: 9, identity: 0.719

acgctgatttgatgggggctggtgcaggagat	CRISPR spacer
gtgaagctttgttgggggctggtgctggagga	Protospacer
..*  * **** ************* ****. 

10. spacer 2.6|1065233|32|NZ_CP046009|PILER-CR matches to MN692948 (Marine virus AFVG_117M19, complete genome) position: , mismatch: 9, identity: 0.719

acgctgatttgatgggggctggtgcaggagat	CRISPR spacer
gtgaagctttgttgggggctggtgctggagga	Protospacer
..*  * **** ************* ****. 

11. spacer 2.2|1065231|32|NZ_CP046009|CRISPRCasFinder,CRT matches to MN693666 (Marine virus AFVG_250M158, complete genome) position: , mismatch: 10, identity: 0.688

acgctgatttgatgggggctggtgcaggagat	CRISPR spacer
tcgctgatttgatggcggcgggtgggtaggtc	Protospacer
 ************** *** **** . ..* .

12. spacer 2.6|1065233|32|NZ_CP046009|PILER-CR matches to MN693666 (Marine virus AFVG_250M158, complete genome) position: , mismatch: 10, identity: 0.688

acgctgatttgatgggggctggtgcaggagat	CRISPR spacer
tcgctgatttgatggcggcgggtgggtaggtc	Protospacer
 ************** *** **** . ..* .

13. spacer 6.1|3361649|30|NZ_CP046009|CRISPRCasFinder matches to NZ_CP010990 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence) position: , mismatch: 10, identity: 0.667

tggtgcaccgattgctggatgcggcaccgg	CRISPR spacer
gatcttgacgattgctcgatgcggcaccgc	Protospacer
 . . .. ******** ************ 

14. spacer 6.1|3361649|30|NZ_CP046009|CRISPRCasFinder matches to NZ_CP012186 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-1, complete sequence) position: , mismatch: 10, identity: 0.667

tggtgcaccgattgctggatgcggcaccgg	CRISPR spacer
gatcttgacgattgctcgatgcggcaccgc	Protospacer
 . . .. ******** ************ 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 807071 : 853255 48 uncultured_marine_virus(20.0%) integrase,protease,transposase,tRNA attL 800051:800099|attR 819523:819571
DBSCAN-SWA_2 1110372 : 1117512 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_3 1703177 : 1712618 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_4 2232155 : 2299043 75 Enterobacteria_phage(43.75%) tail,portal,protease,transposase,terminase,lysis NA
DBSCAN-SWA_5 2502203 : 2510812 8 Enterobacteria_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_6 2695193 : 2702897 7 Enterobacteria_phage(33.33%) transposase NA
DBSCAN-SWA_7 2828387 : 2869842 38 uncultured_marine_virus(20.0%) protease,transposase NA
DBSCAN-SWA_8 2925283 : 2987196 53 Bacillus_phage(20.0%) capsid,protease,tRNA,terminase,integrase,head attL 2976889:2976906|attR 2987363:2987380
DBSCAN-SWA_9 3589496 : 3659419 57 Streptococcus_phage(16.67%) plate,holin,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP046008
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 114122 105 Salmonella_phage(88.51%) transposase,tail,integrase,terminase attL 21592:21607|attR 39675:39690
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP046007
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 27815 26 Escherichia_phage(33.33%) transposase,integrase attL 22466:22478|attR 29504:29516
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage