CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP043481	Komagataeibacter oboediens strain BPZTR01 chromosome, complete genome	3 crisprs	csa3,DEDDh,DinG	0	1	0	0

Cas Category Instructions

Results visualization

1. NZ_CP043481

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP043481_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043481_1

718988-719103

Orphan

Consensus_repeat	Method
CACGGAATGCCGCCTTTGCCATAAAAGGCAGCCCCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043481_1

>merge|NZ_CP043481|1|718988-719103|CRISPRCasFinder
CACGGAATGCCGCCTTTGCCATAAAAGGCAGCCCCCGGAAGCCATCATCATTGCCKRTSCSSTWTWKYRYAWAWCTSKCACGGAATGCCGCCTTTGCCATAAAAGGCAGCCCCCGG

>NZ_CP043481|1|1|718988-719103|CRISPRCasFinder
CACGGAATGCCGCCTTTGCCATAAAAGGCAGCCCCCGG	AAGCCATCATCATTGCCKRTSCSSTWTWKYRYAWAWCTSK
CACGGAATGCCGCCTTTGCCATAAAAGGCAGCCCCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043481.1\|WP_010514047.1\|729560_730790_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_CP043481.1\|WP_010514030.1\|711500_712433_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
NZ_CP043481.1\|WP_083819079.1\|725125_726082_-\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|372592
NZ_CP043481.1\|WP_029329402.1\|709372_711280_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP043481.1\|WP_010514036.1\|719919_720717_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|223162
NZ_CP043481.1\|WP_010514039.1\|723203_723848_-\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
NZ_CP043481.1\|WP_048856676.1\|716014_717310_-\|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223222
NZ_CP043481.1\|WP_010514038.1\|722248_723211_-\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|236022
NZ_CP043481.1\|WP_010514042.1\|726419_726995_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP043481.1\|WP_010514031.1\|713453_713909_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|226309
NZ_CP043481.1\|WP_048856681.1\|723851_725129_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP043481.1\|WP_010514043.1\|726991_728086_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237586
NZ_CP043481.1\|WP_154221034.1\|708090_708576_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043481.1\|WP_010514026.1\|707786_708041_-\|molybdopterin-converting-factor-subunit-1	unknown	unknown	gnl\|CDD\|340452
NZ_CP043481.1\|WP_026018684.1\|712513_713233_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP043481.1\|WP_010514034.1\|717347_718850_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP043481.1\|WP_042658820.1\|728107_728566_-\|MCE-family-protein	unknown	unknown	gnl\|CDD\|275223
NZ_CP043481.1\|WP_110507204.1\|708680_709280_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP043481.1\|WP_010514037.1\|720713_722252_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237012
NZ_CP043481.1\|WP_042658819.1\|713895_715761_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104

Protein	Function_ID	Function_description	E-value
NZ_CP043481.1\|WP_010514047.1\|729560_730790_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	6.28048e-23
NZ_CP043481.1\|WP_010514030.1\|711500_712433_+\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	3.66309e-118
NZ_CP043481.1\|WP_083819079.1\|725125_726082_-\|lytic-murein-transglycosylase	gnl\|CDD\|372592	pfam13406, SLT_2, Transglycosylase SLT domain. This family is related to the SLT domain pfam01464.	1.22804e-127
NZ_CP043481.1\|WP_029329402.1\|709372_711280_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP043481.1\|WP_010514036.1\|719919_720717_-\|TatD-family-hydrolase	gnl\|CDD\|223162	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair].	5.3685e-102
NZ_CP043481.1\|WP_010514039.1\|723203_723848_-\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	6.69039e-73
NZ_CP043481.1\|WP_048856676.1\|716014_717310_-\|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase	gnl\|CDD\|223222	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].	6.63723e-89
NZ_CP043481.1\|WP_010514038.1\|722248_723211_-\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|236022	PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated.	9.43031e-86
NZ_CP043481.1\|WP_010514042.1\|726419_726995_+\|hypothetical-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	3.28297e-12
NZ_CP043481.1\|WP_010514031.1\|713453_713909_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	3.1058e-46
NZ_CP043481.1\|WP_048856681.1\|723851_725129_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.54566e-122
NZ_CP043481.1\|WP_010514043.1\|726991_728086_+\|hypothetical-protein	gnl\|CDD\|237586	PRK14016, PRK14016, cyanophycin synthetase; Provisional.	2.92246e-06
NZ_CP043481.1\|WP_010514026.1\|707786_708041_-\|molybdopterin-converting-factor-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.12966e-26
NZ_CP043481.1\|WP_026018684.1\|712513_713233_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.09407e-64
NZ_CP043481.1\|WP_010514034.1\|717347_718850_-\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP043481.1\|WP_042658820.1\|728107_728566_-\|MCE-family-protein	gnl\|CDD\|275223	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD. Members of this protein family are the MlaD (maintenance of Lipid Asymmetry D) protein of an ABC transport system that seems to remove phospholipid from the outer leaflet of the Gram-negative bacterial outer membrane (OM), leaving only lipopolysaccharide in the outer leaflet. The Mla locus has long been associated with toluene tolerance, consistent with the proposed role in retrograde transport of phospholipid and therefore with maintaining the integrity of the OM as a protective barrier.	5.75174e-31
NZ_CP043481.1\|WP_110507204.1\|708680_709280_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	5.55264e-43
NZ_CP043481.1\|WP_010514037.1\|720713_722252_-\|methionine--tRNA-ligase	gnl\|CDD\|237012	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP043481.1\|WP_042658819.1\|713895_715761_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.08728e-50

>NZ_CP043481.1|WP_010514034.1|717347_718850_-|IMP-dehydrogenase
MSSIPKNTPVPRLEDRIREALAFDDVLVVPDESNVLPSQTSTKTRLTRRITLNIPLISSAMDTVTEDSMAIAMAQNGGLGVIHKNLTIEQQAEQVRRVKRFESGMVVNPVTVYPDQTLAEVNATMSRHGISGLPVVERETNRLVGILTNRDVRFATDPAQRVYELMTRENLVTVRNGVDRDQARQLLHRHRIEKLLVIDDEDRCIGLITVKDMDRAVQYPQANKDSLGRLLCAAATGVGDDGVARARELIAAGVDVVVIDTAHGHSSGVLKSIERIRAIENDIQIIAGNVATPEAAQALIGAGADCVKVGIGPGSICTTRVVAGVGVPQFSAVMETSAACHELDVPAIADGGVRTSGDIVKAIGAGADVVMIGSLLAGTEEAPGEVFLYQGRTYKSYRGMGSLGAMSRGSADRYFQQDIKDTHKMVPEGIEGRVAYKGAMGAVIHQLVGGLRAGMGYTGSATIADLQQRARFRRITGAGLRESHVHDVSITREAPNYRQD
>NZ_CP043481.1|WP_048856676.1|716014_717310_-|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase
MTPSARLSAAIDLLSAMEETPQRPADALANAFFRERRYIGGGDRRAISARVWRILRHWRRLQWWIERVDMNPTPRLLALAMMAVEPLGRENPDDLFTGERYAPLGLTGPERRLYDQLRDKEMTHPDMPRAVALEVPDWLLPRLERTFGEGLEAELAAMEGEATLDLRVNLLKSDRPTARAALEAEGIAAQETTLSPWGLRLAGRQPVTSCAAFRSGMVEIQDEGSQLVVAAVGARPGMRVLDYCAGAAGKTLGMAMTMENRGHIVACDVSEPRLEGAVRRLRRAGVHNAERHLLVSGDRWARRRSGSFDRVLVDAPCTGTGTWRRNPDARLRLREQDLLELTAKQADIMDRAAALVRPGGRMVYATCSVLREENGDQITAFLARNPAFSPVTPDGVHDDLPPGLAQAGQVCLTPRQHHTDGFFAAIMQRDS
>NZ_CP043481.1|WP_042658819.1|713895_715761_-|sodium:proton-antiporter
MQATNLAIGILCVLGGGIAAQWVAWRFKLPAIVLLFSLGLLFGPGLGILHPGAAIGPYFHPLVSMAVAFIVFEGGLALDFRQWRESGEGVLRLTAAALPINWVLGSLAAHYVGHLPWGTSWLFGAIVVVTGPTVVLPLLRHTKLRPRVAAFLRWEAIVNDPIAAILATLVLECLLIRPLHTGGMSLAAMEIGPHLLFATMFAIACGIFPAVLIKFLSARDMLPEILRIPMILAFAMGVAAVCNLLMQGAGLMAATVFGMALANLHVTGMSELQRIKESLGVIVVSCLFVLLTADLPRALLTELSLPIMALTFTVMFVVRPLGIFLSTIGASMSWQERLFVGWIAPRGIVAAAVAGVVGLQLHEAGYPGGDLITPAVFALIASTMILHGFSLRPLARALRLTLSDEPALAIMGANAWSTSLARAVHDRGVPVLMVDTYAPALNKAAGFGIPILRAELLSVEGQESLEERPADYLIATTPDAIYNGLVCARMAPDLGRQRVFQVSPGLARLDLYHGLSRDSRGKVLGEPGWNFSYIDSLYAKGWRFGSHVMEEHVEEADLLDGPGMLFMIIRKGSAIWIFSAEDAIPAEPAAGDIIVMLLPPAVAPAAPVAAVVPPAPEPIPA
>NZ_CP043481.1|WP_010514031.1|713453_713909_+|L,D-transpeptidase-family-protein
MREIIPAIIGAGGVKNRKTEGDHATPCGILPLRRVFYRADRVPSPVCHLPVEPLSPLDGWCDDPDHPDYNRYVSLPHPARHERLWREDHVYDIVVVLGYNDDPVHSGAGSAIFLHLPPDGGRPTEGCIALPEPVLRRLLAAGLGEIDVRPV
>NZ_CP043481.1|WP_026018684.1|712513_713233_-|response-regulator-transcription-factor
MAGARPILIADDDQTLRQMLVEQLQIDGEFEAIEAGSVAEAWEKLQKPGARFDAIILDVSLPDGDGRDFCADLRRKGKRIPIIILTGSDDETDVVRGLDAGANDYVAKPFRIAELLARLRAQMRIFENSEDAVFAIGPYIFRPSAKLLQETAKNRRIRLTEKEAAILKFLYRAGTRPVPRQVLLNEVWGYNAAVTTHTLETHIYRLRQKIEPDPTNATLLVTEGGGYRLDPEGGKTAIA
>NZ_CP043481.1|WP_010514030.1|711500_712433_+|exodeoxyribonuclease-III
MVENPVSILCGISAAFCNSFLFLSPTAQRTGKNILVSPRPIGNAPDMRIVTWNINSLRLRMPLLAQLCQDTSPDIVCLQETKVPDSLFPLDAVRALGFDHVVFRGMKGYNGVAILSRQPVTVLEDAPDWCQRGDCRHIAVRHGTGADAIDVHDFYVPAGGDIPDPVENPKFAHKLAFVEEARQWFSGRDMRRTVLVGDLNIAPLEQDVWSHKQLLKIVSHTPAETERLMAWQQTGFVDAMRHFVPATEKLYTWWSYRNRDWSKSNRGRRLDHVWITPDLQPALRGMQVLRAARDWDKPSDHVPVMIDLDA
>NZ_CP043481.1|WP_029329402.1|709372_711280_-|excinuclease-ABC-subunit-UvrC
MDERLPSMTTAISTAPVRPVGVEAIHHALQTMPQSPGVYRMLGPKGDVLYVGKALNLKKRVTSYTHVGRLTERLRRMVSETRSMEIVTTHTEAEALLLESNYIKRMQPRYNILLRDDKSYPWIMLTDKHDFPQISKHRGKPVKGASYWGPFASAWSVNQTLNLLQRTFLLRSCSDSEMQGRTRPCLLHQIHRCSAPCTDRISREDYADLARQARDFLAGRNPHMREELGREMEEAAEALEFERAAAIRDRIRGLSALQQDSSVINPSTVTDADIIAIWQIAGQSCIQVFFIRAGRNNGNRAFFPSHARDENAPDVLAAFIGQFYDDKPPPVHVLVNQDLPELDVLTSALTLRRGRKVEITHPQRGEKRAVIEHAELNAREALERKLAESAGQARLLQGVADLFGLDAPPRRIETYDNSHIQGANAYGVMVVGGPEGFDKRAYRKFSIKGPVTPGDDFAMMREVLERRFRRALKDREEGVRPEDWPDILLIDGGAGQYTAVRGVLDELGVTGVTLVAIAKGPDRDAGREWFHTEGRPPFQLPPRDPVLYYLQRLRDEAHRFAITTHRAGRSKTLVRSELDDIPGVGPARKRALLNHFGSARSVRQAGLGELENAPGINRDMARAIYGYFHPGWTGE
>NZ_CP043481.1|WP_110507204.1|708680_709280_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MLTDLPNLLTLSRIVVVPIVAGLVVIHTPQTDCAACVLFVLAGITDYLDGKLARAWNQNSDLGRMLDPIADKLLVGASLMVLAGLGRLPYGCLYPAIIILSREILVSGLREYLAATRVGLPVTRLAKWKTGFQMTAIGFLLAGDSTAGLLHIGWLPVDVMGAVMMWIAAVLTLITGWDYLSTGLRHVNRGTTGATKLSS
>NZ_CP043481.1|WP_154221034.1|708090_708576_-|hypothetical-protein
MVLSLLVGLTGCGGFGHILSGNTELPGSLPNTPHAEVENMRRVAGQAPQVLPIMPQERNIWPVVRSGQSVLVAIGADGVSAGTRSQLVEREVDLPAGGEMRIGNDADPDGVPAGGGHVSALSSGPSATHKGVSDSAIVVPNGDGTTTVVASDGTVQEQQAP
>NZ_CP043481.1|WP_010514026.1|707786_708041_-|molybdopterin-converting-factor-subunit-1
MLRILYFAWLRDQLGCPGETLPLPQGVRSVQDLIDRLRARGGAYGEIFARPELIRVAVNHSFATIDAPVAANDEIAFFPPVTGG
>NZ_CP043481.1|WP_010514036.1|719919_720717_-|TatD-family-hydrolase
MTRSGLTDSHCHLDHFSDEEMPEILARTREAGVDGMVTIGTRLSRADQQKKLATLDTPDLRVWCTIGTHPDHVDEEVLPDVAELVAMADDPRVVGIGESGLDYFHGQPDIRPRQHESFRVHIDAARRTGLPLVIHTREADDDTLGILRDETARNGAFPFLIHCFSSGPDLARGALELGGYISFSGIATFNRAQSVRDVAKDVPADRLLVETDSPYLAPVPRRGKRNEPGYVAYTARMLAELRGVEDAAFAELTTRNFSRLFSRAV
>NZ_CP043481.1|WP_010514037.1|720713_722252_-|methionine--tRNA-ligase
MTRRYYVTTPIYYVNGAPHIGHAYTSVAADVIARFKRLAGFDVFFLTGTDEHGQKVEQAAQAADMTPIAFADRVAADFRDMYDKMAISYDDFIRTTEPRHADGAQALWKKLEENGHIYLGAYEGWYATRDECFYGEEELVDGPDGKKVAPTGAAVEWVKEPSYFFRLSDFADRLLELYETRPGFIEPASRRNEVASFVKQGLRDLSISRTSFNWGIPVPGDPKHVMYVWVDALANYLSAVGYPDETAPRWDFWPANLHLVGKDILRFHAIYWPALLMGAGLELPRRVFSHGWWTIEGQKMSKSLGNVVDPRDLVTEFGLDPIRFFLMREMPFGGDSDLSRRAIISRMNVELANDLGNLAQRTLSQIARNCDGRLPAQGTRTAEDTKLLAAASLLPQIMHDQIDRQALTDALEEVWKVIRACNAYIDHQAPWKLKKTDAARMGDVLRVLADALRIIATVLQPYMPGSMDKMLTQLGVEEGARDFASLDTPLPAGRELPAPQGIFPRYVEPEAS
>NZ_CP043481.1|WP_010514038.1|722248_723211_-|DNA-polymerase-III-subunit-delta'
MPDPRACRRLLGHDAAWQEFLSVIRTGRLHHAWLLTGPEGIGKATMAFMMARTLLGAQDHDSPVGRRVTAGTHADLLVVARGMDEKRHRPRREIVGDDIRPISAFLRRTAAEGGWRVVIVDGAEYMNRTAANAILKILEEPPERAILILTTSVPGRLLPTIRSRCRVLALSPLDDAAMRAVLADMPSAPMAEQVARILPLAHGAPGRAAGLLAGNAAELADIVAAVMDGTVGDAAGYDIAEQVVRRENGFCVFFDLLCDAISDRTRNLALGAERGREGDPHPARLALLWQDMVRLRAETEQFNLDKLQAVLTALARVSGT
>NZ_CP043481.1|WP_010514039.1|723203_723848_-|dTMP-kinase
MSGLFITFEGGEGAGKSTQARLLADHLCALGLDVDLTREPGGTPGAEALRDFLLFGGHDLSPRAEVMAHFAARADHVDRRIAPALAAGKVVVCDRFTDSTEAYQGYGLGQGDPALLEMIARLRGLIPVVPELTLVLQVSPAIAAARMAARGNGRTDRYEALDTAFHARVAAGFDAIARRDDTRCRRIDASAATAAVQDDIRAIVAPYLNRVADA
>NZ_CP043481.1|WP_048856681.1|723851_725129_-|D-alanyl-D-alanine-carboxypeptidase
MTDPVTPAVAARPAGTYRTKDTMHTRRFLLAGATSLLVSTPAWAASRRRHPAATAAAAPAPVIPSSPANSLIGPIDTIARWACIVDYTTGAVILEKAADERMPPSSLTKMMTAYVVFSMLRAGRLTLEQMLPVSEKAWRMQGSKMFVPLRGSVAVSDLIQGMVIQSGNDACIVLAEGIAGSEDQFVGMMNAQAAQLGMTNSHFLNATGWPMDGHYMSARDVATIAMHLIHDFPEYYHFFSEKSFTFNKISQENRNALVVRGVADGLKTGHTDAGGFGLCASAERSGNRVVMAINGLPSSNARANEGERLFEWSFVNFENATLIHNGAVVDNIPVWLGQSPTVPVIATRDVTLTLPHGWQNRVHVSMDYRSPVPAPVTAGQQLGELVIANTGLAEIRVPLVAGAAVPRLGLMGRATAVLGRKLGHG
>NZ_CP043481.1|WP_083819079.1|725125_726082_-|lytic-murein-transglycosylase
MPARAAHHHAPATSATGGGTGDYATFLATVRRDAIRQGLTADAVTRALDLSAPNPQVIQRDRTQPEFHLTWAQYRDRVVTQRKIADGRAAFAQQRTILEQQVLTRYDVAPGAVMGIWGLESAYGALTGKFAVVDALCTLAFEGRRAKFFHDELFHALSILNAGDITPDLMTGSYAGAMGQPQFMPSAYLKYAVDIDGDGRRDIWHSVPDIFGSIANYLTGSGWVGGESWGQQVIVPDSVAQSMLGRTQTRTLAEWMAMGVRQMGGAPFDRPTDTGAVLRPDGPGGEAFMVYRNFAAIRRYNPSDFYALAVGLLGNEIA
>NZ_CP043481.1|WP_010514042.1|726419_726995_+|hypothetical-protein
MPTLTAYLMAAGASPVMQALAIIIGTFILEDAATIMTAMQVRTGHVDVMVALVALYIGIVVGDMGLYGMGRLAALWPPARRWITLPGGAQEGQWFDRNVFRIVFISRFVPGARLPLYTACGFFRARFGLFCIAAVLATLIWTSMLFLVSLQVGQFLIDHLGTWKWAGMAGFVLTIFLISRMIARLQSNETR
>NZ_CP043481.1|WP_010514043.1|726991_728086_+|hypothetical-protein
MTDVTTAIDSRSAKQAGGPTVSSFEFWPGWIFYTPIVLYWIILGLWHRDFSLPTAANPRIETGGLCGESKSSILDMAGDEARRWIAPYAVLTTGHDDLPRALAAMKGAGLSFPVVLKPDIGCNGSGVRIMRDEDSLRAGLAAFGRGVPVMLQHLIPYGHEVGLFYIRHPDEAEGRITSLTYKEVPCLTGDGTSTVEELVHADARTRLVPHIYLPRLKARLHEVPPAGQSLPLVFAGNHCKGSIFHDRAVDITPELSARVNAIMRDIPDFHFGRIDAKARSLASLRKGEDFQIIEINGVGSEATHIWDARTTLRDAYTTQFMHYRETFRIGAKKRREGWKSSGAMAMLRAWLRQRRLMASYPLND
>NZ_CP043481.1|WP_042658820.1|728107_728566_-|MCE-family-protein
MARQRSGAIISSGLVLLVAGGFCIYARASQSGGSQDRYPVTARFISANGLAVGADVDMDGVPVGRVTSIALDPTTYMANVGFTVDRTLPLPEDTTLSIGSPTLTADTALLVQPGQSADRLKPGAVITNTREPLSLEQQVSNYIFGNGGLPAN
>NZ_CP043481.1|WP_010514047.1|729560_730790_-|mechanosensitive-ion-channel-family-protein
MKTEFLALLTKIRHLFGWLPGLLSSILMLCVAGLVAEMFSRFITKLILRIPGQKRGAFVRSFTMAMQRPVRIMLVIVFVGTALPVSGLPYDIMQATTHTLVVLFVLMLGYAAVVATRILSDAYLKRINGKDDKDDILLRTHMTQVRVLRRTTDLLIGLLTIGAALMTFEPVRQYGLSLFASAGAASLVVGLAARPLLTNLFAGMQIAMTQPIRMEDLIIINGDWAWVEEITSTYVVLRVWDWRRHIVPISYFLENTFQNWTHNSAALIGVVFLYVDFNAPMDRIRERLREIVHSAPLWDGKEFAVQVADCNAQVMTIRVIASARSAMQSWDLRCEIREQILAFLRDECPEALPRERISHVASASGLDVMGDPGMLSPPIRRPPPGAYLGPRNGAGGGGMGSSDGGQGHG

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Crispr_ID: NZ_CP043481_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043481_2

1866386-1866483

Orphan

Consensus_repeat	Method
ATCTGCTTCGCGTATGTGTTCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043481_2

>merge|NZ_CP043481|2|1866386-1866483|CRISPRCasFinder
ATCTGCTTCGCGTATGTGTTCTGAATAACAAAAAGGCCGGTCGGGTTATGCCCTGACCGGCSKRARAMWGAKYMATCTGCTTCGCGTATGTGTTCTGA

>NZ_CP043481|2|2|1866386-1866483|CRISPRCasFinder
ATCTGCTTCGCGTATGTGTTCTGA	ATAACAAAAAGGCCGGTCGGGTTATGCCCTGACCGGCSKRARAMWGAKYM
ATCTGCTTCGCGTATGTGTTCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043481.1\|WP_010514742.1\|1875786_1876674_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381314
NZ_CP043481.1\|WP_010514734.1\|1869296_1871432_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP043481.1\|WP_010514737.1\|1873100_1873718_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_CP043481.1\|WP_010514725.1\|1861046_1862582_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP043481.1\|WP_154220970.1\|1859592_1860222_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043481.1\|WP_082071215.1\|1874590_1875670_+\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NZ_CP043481.1\|WP_010514729.1\|1866551_1867523_-\|MCE-family-protein	unknown	unknown	gnl\|CDD\|224380
NZ_CP043481.1\|WP_010514743.1\|1876785_1879350_+\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|227342
NZ_CP043481.1\|WP_010514722.1\|1858321_1859596_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
NZ_CP043481.1\|WP_010514717.1\|1856295_1857192_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP043481.1\|WP_010514728.1\|1865965_1866382_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP043481.1\|WP_010514715.1\|1853369_1856063_+\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445
NZ_CP043481.1\|WP_010514735.1\|1871526_1872945_+\|2-nitropropane-dioxygenase	unknown	unknown	gnl\|CDD\|240081
NZ_CP043481.1\|WP_010514733.1\|1868726_1868996_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP043481.1\|WP_042658880.1\|1857268_1858153_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043481.1\|WP_010514727.1\|1863245_1865942_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP043481.1\|WP_010514730.1\|1867777_1868698_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235442
NZ_CP043481.1\|WP_010514740.1\|1873714_1874443_-\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NZ_CP043481.1\|WP_010514726.1\|1862616_1863249_+\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|236401
NZ_CP043481.1\|WP_039736653.1\|1860405_1861026_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627

Protein	Function_ID	Function_description	E-value
NZ_CP043481.1\|WP_010514742.1\|1875786_1876674_+\|aldo/keto-reductase	gnl\|CDD\|381314	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR). Xylella fastidiosa phenylacetaldehyde dehydrogenase is a founding member of aldo-keto reductase family 13 member B1 (AKR13B1). phenylacetaldehyde dehydrogenase (EC 1.2.1.39) catalyzes the NAD+-dependent oxidation of phenylactealdehyde to phenylacetic acid.	4.02093e-137
NZ_CP043481.1\|WP_010514734.1\|1869296_1871432_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP043481.1\|WP_010514737.1\|1873100_1873718_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	7.15467e-100
NZ_CP043481.1\|WP_010514725.1\|1861046_1862582_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP043481.1\|WP_082071215.1\|1874590_1875670_+\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	2.30752e-152
NZ_CP043481.1\|WP_010514729.1\|1866551_1867523_-\|MCE-family-protein	gnl\|CDD\|224380	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	2.52499e-09
NZ_CP043481.1\|WP_010514722.1\|1858321_1859596_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	1.92777e-57
NZ_CP043481.1\|WP_010514717.1\|1856295_1857192_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.39072e-82
NZ_CP043481.1\|WP_010514728.1\|1865965_1866382_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	6.12553e-43
NZ_CP043481.1\|WP_010514715.1\|1853369_1856063_+\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
NZ_CP043481.1\|WP_010514735.1\|1871526_1872945_+\|2-nitropropane-dioxygenase	gnl\|CDD\|240081	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	4.83249e-16
NZ_CP043481.1\|WP_010514733.1\|1868726_1868996_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	2.38452e-50
NZ_CP043481.1\|WP_010514740.1\|1873714_1874443_-\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	6.54328e-150
NZ_CP043481.1\|WP_010514727.1\|1863245_1865942_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP043481.1\|WP_010514730.1\|1867777_1868698_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235442	PRK05389, truB, tRNA pseudouridine synthase B; Provisional.	4.11022e-158
NZ_CP043481.1\|WP_010514743.1\|1876785_1879350_+\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP043481.1\|WP_010514726.1\|1862616_1863249_+\|RNA-binding-protein	gnl\|CDD\|236401	PRK09190, PRK09190, RNA-binding protein.	1.58565e-75
NZ_CP043481.1\|WP_039736653.1\|1860405_1861026_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.05514e-57

>NZ_CP043481.1|WP_010514728.1|1865965_1866382_+|30S-ribosome-binding-factor-RbfA
MSESGPAGKLAGHSASGPSQRQLRVAEEVRRVLAEIFSRTEFRDPDLADVRITVTEVRISPDLKHATVFVARLGRSDVAELLPALKRVTPFLRTRLSHALRLRGVPDLHFQPDTALDYAMEVDNMLRQPEVRRDLEED
>NZ_CP043481.1|WP_010514727.1|1863245_1865942_+|translation-initiation-factor-IF-2
MSEGNDQDQGKGRLSLRPAGRREVGRTVDAGSVRQSFSHGRSKVVQVEVRKKRGAGAAGNGSGPAGGRAGGRGGRALTAAELATRQRVLDEQRRAAIQREKEAREQEKITILSAAEEARRQEEENARRAEEEAQAKADAAAEAEARKQEARSAAATTQAKSEPVEPEGPVVSSVPIPGEVTLAPPMQRLRPLAERAIMPAQPLRPSRPAGGGNAAAGRTAAGAGETLRLRTGRADGGEEERRPSRRPGNAAPGRRPSGGAKKNNDSRRAGRIDVQAAIEGDDDKTRSLASVRRQRERERRQAELERLRSDQVRVVRDVVLPETITVQELANRMAARQGEVIKALMKMGVMATVTQSLDADTAELIVQEFGHRVRRVSDSDVEIGIEGIEDRPEDLKPRPPVVTVMGHVDHGKTSLLDALRTTDVANGEAGGITQHIGAYQVTLASGAKITFIDTPGHEAFTAMRARGASVTDVVVLVVAADDGVMPQTIEAIKHAKAADAPIIVAINKCDKPGANPDRVRQELLNHEIVVESMGGDTQDVEVSALKRTGLDKLEEAILLQAEILDLKANPDRVAEGSVIESRLDRGRGPVATVLVQKGTLRRTDIVVAGAEWGRVRAMIDDRNRQLSEAGPSMPVEILGITGVPGAGEPFVVVENENRAREISEFRQRVIKERMAAGQTAARGTLDQMLARIQAGAQKEVAVLIKADVQGSAEALEATVQKLEHEEVKIRVLNATVGQITESDVQLAKASGAVIIAFNVRATAQARELAQREGVDIRYYSIIYQVADDVEQLVRGKIAPKHREKFLGYAEIRKVFEITKVGKVAGCYVTEGVVKRGCGVRLLRDNVVIHEGELSQLKRFKDDVKEVARGYECGLSFAGYNDLREGDVVECYEMELVPA
>NZ_CP043481.1|WP_010514726.1|1862616_1863249_+|RNA-binding-protein
MEHEERGPLRRCAVTRVRLPKEEMIRFVISPDGVVIPDLSARLPGRGIWLSARADVLETARTRGAFARAARGRVVIHPDLTHLVEDGLLRRMMDVAGLARRAGQIVCGFAKVREWVVGGRAGLVIQAADGSPDERKRVLSGARDLPVTVVPTASGLGAAFGRDHVVHAAMLHGELARRFRIESERFAGLSGRAGPNSAERSAGRCEQAGT
>NZ_CP043481.1|WP_010514725.1|1861046_1862582_+|transcription-termination/antitermination-protein-NusA
MDTSVARPELLLVADAVAREKSIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVRLSRWTEAVETVENEETQIPLYIARKFKPEIQLGEYLIDPLPPIDFGRIAAQTAKQVIVQRVREYERRRQFNDFKDRVGEIINGTVKRTEYGNLLVEIGDAEALLRRDELIPRESFRNSDRVRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAVISRDASIDPVGACVGVRGRRVQEVVKELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVMDEEAGRVEVVVPDDQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSNLFVEALDVDDVIAGLLVTEGFHSIEELAFADPEELASIEGFDEDVASELVRRAEGYLAGQEEELDNKRRALGVTDDIAALGVFTNQMLVTLGEKGVKTLDDLADLAGDELVEILGSDAIDEDAANEIIMAARAHWFDEDDKAGEQETSDV
>NZ_CP043481.1|WP_039736653.1|1860405_1861026_+|ribosome-maturation-factor-RimP
MDADLPFLTGLDARIAEMIAPALADMGFDLVRVAVLGRESPTVQIMADRADGTLIAIEDCEQISHAVGAILDVEDPLPGAWTLEVSSAGIDRPLTRAKDWERFAGHLARAEMNMPVDGRKRFSGIVLGARDGHGLMRLDDGTEVALPFADMRKARLVLTDELIEASARMMKPDAASDENGPEEDASPAGTQKAPGKPDRKPARKAN
>NZ_CP043481.1|WP_154220970.1|1859592_1860222_-|hypothetical-protein
MNSPPEPTRERSERSSSRRLVVVGLIAAVVAGGGLGTGGFMAAREGGSSSQTPPVAAEAGGGGTSDGTHLMLNAPVQNRPDMMGQMPMISPDRAADMLRQTSYSIQQQAEILAALKRRDIILADMPMYDMTGSNAVVNVQSLGLVQTVRLGPQPKSVILPIRVAGNVSITAAGDPGPAGIHAGAVFVPGPTALPVLTRDTEIVIGVVVQ
>NZ_CP043481.1|WP_010514722.1|1858321_1859596_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MKPLYPALMERLVPLIMVIFLVLGSFQAAMALHLSLASLRHFMEWCAPAYPVVAAASALLALTGLWFENRAEKLARKGIRRRRGWIMDVLARLTNRSALEEMLAREQKETVIDAEELAASLRARVIGQDQVCEDVATQLRRRLALQVRGKPVGIFLLAGPPGTGKTYLAKQLARQLDRPLLNFDMTQMSSPHAATQLFGSPKGYVGSDTYGKLTGGLKEKPDAVVLLDEIEKAHPDVFKKFLTAWNDGHVTEASTGQQISTVRSIFILTSNIATEALTEIADRLADEPDKMRAESVEALRQAGFAPEVLNRLDRIFIFRPLEGLDIARVSALEIEAMIDSYGLKVETGGIDPALLFEVMRRQDRMGPAASARDLARSIEDMISDSLITARQQGAKLVRVVSSEDGIVAEIADEERDAQRARISS
>NZ_CP043481.1|WP_042658880.1|1857268_1858153_-|hypothetical-protein
MIVPFTVLTLIFPPAYLLRLVPRLAALSANIHNRLGMHDAPAKGEGSGDSNGEDGVITMMPITDRLTKAIPFAGRILPLPAGTWHPVMNIINGPHGEVLENVLIRVEGHVVTGMIGAEGSTQPVPETAISSIDSSCHDDRNYMSRVLTAHPPAMECWFTTAVYPASINRTAIIANRLREEGFVLPPVLLKAGWSYSTPAGDHNVNVETVTIFLNPVNTDSTKMLRTPDYWVKDTLGQQPAASDFVKRTNTWMAGWAQVLHDGFNSDMLASSEEQRERLARDPAAPQPGRGSPLD
>NZ_CP043481.1|WP_010514717.1|1856295_1857192_+|LysR-family-transcriptional-regulator
MDLLSALHSFVRVAATGSFSAVSRETGASQPTISRHIALLEAHYGATLFARTTRSLMMTEDGRSLLPHAYEVLEILETAETALGRRRASVSGLVRLGVTTAFGLYLTSRLGSLLEEHPDLSVELVMRDGFGDLVEEGLDLAIRIGSIAEGSLIARRLGSVHRCVVASTDYLARRGTPEHPRDLLNHPCIAYSYGGTRHDWQFGRKGEAETTVAASGPFRANSSEAVLQAVRAGLGIGMLPTFQVEEDIAAGRLKHLLPEWTIPELPFYAVHTGPRTLPLRTRTVLDFLIEISDVLRQG
>NZ_CP043481.1|WP_010514715.1|1853369_1856063_+|aconitate-hydratase-AcnA
MKTVGHDSMKTGRTLNVDGKTYHYFSIPEAEKTIGSVSRLPVSLKVLLENVLRFEDGHSYSVEDAKAIAGWLKEGRSTKEVPFKPARILMQDFTGVPAVVDLAAMRDGILKLKGDPQKVNPLVPVNLVIDHSVMVDVAGSPEALQDNVTIEFERNGERYAFLRWGQEAFENFSVVPPGTGICHQVNLEYIAQAVWTANVDGKDYAYPDTLFGTDSHTTMVNGMGVLGWGVGGIEAEAAMLGQPIAMLIPDVIGFKLVGKLPEGATATDLVLTVTQMLRKKGVVGKFVEFFGPALDHLPVADRATIANMAPEYGATCGFFPVDNLTLDYLRQTGREEHRIKLTEEYLKAQGMFRHAESAHPVFTDTLELNLETIVPSIAGPKRPQDRVVLKGADKAFEKELTGSLGVPEADKDKKAKVAGTNYEIGHGDVVIAAITSCTNTSNPAVLIAAGLVAKKARALGLKPKPWVKTSLAPGSQVVTDYLNRAGLQAELDAMGFNTVGYGCTTCIGNSGPLEDHIVDAIEGNKLVAVSVLSGNRNFEGRISPNVRANYLASPPLVVAYSLLGTMREDITTTPLGTSKNGKPVYLKDIWPTNHEVAALMGTAITREEFINRYKHVSQGTKEWQALKVATGSETYKWDPSSTYVQDPPYFQDITPEPKPRGDIIGARLLALLGDNITTDHISPAGAIKESSPAGQYLEAHGVAKKDFNSYGSRRGNDRVMVRGTFANIRIKNEMLPGTEGGVSKHFPDGKEGSIYDVAMEYKKEGVPLVVIGGKEYGMGSSRDWAAKGTLLLGVRAVIAESFERIHRSNLVGMGVLPLLFEEGTTRKTLGLKGDETFEIRGLDKITPRMTMTMTITRADGSKQDVPLLCRVDTLDEVEYFRNGGILQTVLRGMTKAA
>NZ_CP043481.1|WP_010514729.1|1866551_1867523_-|MCE-family-protein
MAERQTTVGAFVLGGALLGVTAIALFGQFHPFSPSSRAVVVFDSPINGLGVGAPVTFDGVQVGHVDHIAVQFDPQTHQAYIPVTLELQANGAHMAGSHGKVLDSSELPKLVENGLRAELHMQSFVTGQEEIDLTFDPSVPAHLHPGISPLPEIPARESEMQKLTDALTALPLKNIANNADAMLVSIRTLADKLDKDLPPLVDSVRATSDHTRITVDTATDTIRDLDHHVDTTLASIDRLADTGTAQLDARGGELHTLLVNSNETVTEARGALAGLHDITAPSSADRSNIDSSLRDLAAAAAALRGFATDVERNPQLLLMGRRN
>NZ_CP043481.1|WP_010514730.1|1867777_1868698_+|tRNA-pseudouridine(55)-synthase-TruB
MGRKRGRPLDGWLIVDKPSGMTSTQVVGRARYLFDAAKAGHGGTLDPLATGLLPIAFGRATKTVPYIMDGTKRYHFTLRIGEARDSDDAEGSVTAVSDVRPDNAAFETALAAFRGDIMQVPPVFSALKVGGKRSYDMARAGNAPELAPRPARIDRFELIARPDADTAVFEVESGKGVYMRALARDIALACGTVGHVAALRRLNVGPFDESHAIPLDKIVASADNAPAPPDLLLPVATALADIPALALTREEADALSYGQAIDLNQLADRMPEHTDPRSGVVRAMDGARVVGLCRPVDGWLRSVRML
>NZ_CP043481.1|WP_010514733.1|1868726_1868996_+|30S-ribosomal-protein-S15
MSITAERRTALISEYRNAATDTGSPEVQVALLTERIVNLTDHLKTHAKDFHSRRGLLMLVGRRRRLLDYVKRKDQARYETLIKRLGLRR
>NZ_CP043481.1|WP_010514734.1|1869296_1871432_+|polyribonucleotide-nucleotidyltransferase
MFNYFRKEIEWGGRPLVLETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLTVNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSHDMENDPAVVALIGCSAALTLSGIPFFGPVGAARVGYSNGKYVLNPTISQLKESELDLVVAGTSEGVLMVESEAVELSEEVMLGAVTFGHEAFQPVIDAIIDLAESAAKAPWDLAEPTAEEIKLRKKVDKVGRALIADAYKERTKQVRYKKVAAARDAILAKIGEDDADAAKPMIKDLEADVVRTEVLDTGFRIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGQDEQIVDALEGEYRNNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWRAIHPLLPGKDTFPYTMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEDEDFAVLSDILGDEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARQGRLHILGEMAKALTEGRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGTIMIAASSDDQAEKAIERIRGITAEPEVGHIYNGKVVKTADFGAFVNFLGPRDGLVHISELAQGRVSKTTDVVKQGDEVKVKVLGFDDRGKVKLSMRVVDQETGADITETVGAKPGRAPAR
>NZ_CP043481.1|WP_010514735.1|1871526_1872945_+|2-nitropropane-dioxygenase
MKPINAIRMGGTDILPLVEGGKGVSISTGVSAGHWAAAGGAGTVSIVNADSYDKDGNVVPQIYHGKTRRERHEELIDYAIRGGIAQARIAHEIAGGKGRIHANILWEMGGAERVIQGVLEGAPGMIQGLTCGAGMPYRLSEIAARFGIHYYPIVSSARAFNALWRRSYHKTAELLGAVVYEDPWRAGGHNGLSNTENPLAPEDPFPRVLALRKQMRAFGLDDTPIIMAGGVWWLEEWQDWIDNPELGPIAFQFGTRPLLTRESPIPDAWKRRLLTLKKGDVFLNRFSPTGFYSSAVNNSFLRELRGRAERQVPFSPEVLGEHTAALAIGARGRQVFVTPADEQRARLWMEEGHTEAMRTPDNTLVFVSPEKAREILADQGACMGCLSECRFSNWSQKPPAYSNGHKADPRSYCIQKTLQAAAHAHGPDQDAVIDHNLMFGGTNAWRFATDPFYANGFVPTVAQLLERIMTGR
>NZ_CP043481.1|WP_010514737.1|1873100_1873718_-|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MNALPTRLNRGDTLVLATHNRGKIAEFAALLAGYGIRVVSAGDLSLPEPEETATSFAGNAAIKALAAAKAANLPALADDSGFCVAALNGGPGIFSARWAGPKKDYPDAMRRIHDQIGDNPDRSAWFISVLCIAWPDGRTETFEGRIDGHVIWPPHGENGHGYDPIFAPGSGTRSFADMSDVEKNTISHRALAFALFRDTCLPTTE
>NZ_CP043481.1|WP_010514740.1|1873714_1874443_-|ribonuclease-PH
MRPSGRAIDALRPVFIQPGFARHAEGSALIRMGGTEVLCAATVETRVPSFLRGKGQGWVTAEYGMLPRATHSRGQREAAKGKQTGRTQEIQRLIARALRAVVDLKALGEISVTVDCDVLNADGGTRCAAITGAWVALRLALEKLVRAGTLPALPIKGQVAAISCGLTDDGPVLDLDYREDSAASADANFVLTADGGIVEIQGTAEKDPFTEAQFNTLMRLARTGTAELFRIQTAIVEEALKA
>NZ_CP043481.1|WP_082071215.1|1874590_1875670_+|heat-inducible-transcriptional-repressor-HrcA
MAMETRPLVSQPALLSGLDARSAAILREIVEQYVETGEPMGSRTLSQRLPLSLSPATIRNVMADLTDAGLLFSPHTSAGRLPTEKGVRLFVDGLLQFGSLSEDERKSIAGMLDVKGRSLEDMLAKASSMLSGLSSAAGLVMAPKSDGTTIKHIEFVALGPGRALVILVSADGQVENRVIETPPGLPPSALVEAGNYLNAHLSGQTLDRLRETVSTDMTANRNELDHLTAEVVASGLATWSDADERGGTLFIRGQGRLLADVTEIERLTTIQMLFERLETQETMLRLLDLARESEGVRIFIGAESGLFGMAGMSVVVAPARTDSNRIVGAIGVIGPTRINYARIIPVVDYTARVIGRMLG
>NZ_CP043481.1|WP_010514742.1|1875786_1876674_+|aldo/keto-reductase
MFTPDARQSGSFMIGGDLEVTRLGFGAMRITGPGIWGEPADRDAALATLRRLPELGINFVDTADAYGPFVSEDLIREALHPYPDTIIATKGGHTRHGPNIWKPVGNPDYLRQCVLMSMRRLGVERIDLWQLHRVGADCTPEQQFEAIAAMRAQGLIRHVGLSEVTVEMIERARLYFPVATVQNRFNLVNRYSEDVLDYCTKENIGFIPWAPLAAGSLTKGDTLLTRLADEKGVQPGQIALAWLLRRAPVMLPIPGTSNPAHVADNAAAAAIELSDEEFRQLDNDGRAEWARQNGA
>NZ_CP043481.1|WP_010514743.1|1876785_1879350_+|PBP1A-family-penicillin-binding-protein
MTLADGSGRDGRIDGPSRPDAGGPRRPRYRMVRWLAGSTLAVLLLGGGAAGLVAWGEYERLSEGLPTVDGLRTYQPPVMSRLYSGEDQVMAELAAERRIFVPYSAIPERVRSAFLAAEDQKFFTHGGVDPLAIMRAGLTDMMMHGTKHRPIGASTITQQVARIMLLGSNAVSIDRKIKEALLAMRLEQTLSKEQILEIYLNEIYLGEGAYGIGAAAQTYFNKPLDQLDNAEAAFLGALPKSPTNYNPHRFVQAATNRRNWVLDRMADLKVITPEEAREAQQEPLVPANFTRPGPVPGSEWFAEEVRRELIERYGIGTTMEGGLSVHTSLDSHLQQVATTALRDGLLRYDRAHGGWRGAFTHIDAADAAGDWANALARVTPPVAMLEQWRVAVVLSPATGRVGWLEGRDPVIPHTGELLARDRAWMRTGKGLQAGDVVLVEPQADGGGVAVRQVPRVEGALATVDVHTGRVMAMVGGWSFRESQFNRATQAARQPGSSFKPFVYLAAMEQGISPSQKFDDSPVSYGEWHPNNYEKDFWGPTTLHDALRESRNLVTIRLAAQIGMKPVADLAQKLGLVHSMPLVLPAALGAVETTVMREAAAYATIANGGRLVTPTLIDDIKDRNGNVIWHPDGIAWQPGGTPADGPQMVDTRPQVVSATSASQIVAMMQDVVRRGTGVRAGAGIDRPVAGKTGTSQDFNDAWFAGFSPDLVTVVWIGFDTPQSLGKNETGGVIAGPIWNQVMKAAFASRPRLDFRIPDGVQLARYDTGMGMAIDAFKPGQVPGVSVDLGAGSGMALTAADTGAENMPDSENDMGTMPGSPAAASDGTTSAGYPAAPSGAAPSQPSGGDIGMGGLY

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Crispr_ID: NZ_CP043481_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043481_3

2289441-2289535

Orphan

Consensus_repeat	Method
TACTGGCTGTTTATACCATGGCCGCAGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043481_3

>merge|NZ_CP043481|3|2289441-2289535|CRISPRCasFinder
TACTGGCTGTTTATACCATGGCCGCAGAACGAAAGCCCGCCGCAAGGCGGGTTTTTCGTATGTACTACTGGCTGTTTATACCATGGCCGCAGAAC

>NZ_CP043481|3|3|2289441-2289535|CRISPRCasFinder
TACTGGCTGTTTATACCATGGCCGCAGAAC	GAAAGCCCGCCGCAAGGCGGGTTTTTCGTATGTAC
TACTGGCTGTTTATACCATGGCCGCAGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043481.1\|WP_010513896.1\|2287925_2288897_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP043481.1\|WP_010513881.1\|2305062_2305692_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240029
NZ_CP043481.1\|WP_039735503.1\|2278149_2278434_+\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|179001
NZ_CP043481.1\|WP_110507010.1\|2280779_2281574_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP043481.1\|WP_010513894.1\|2289700_2290039_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043481.1\|WP_110507013.1\|2284078_2285230_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|372589
NZ_CP043481.1\|WP_110507011.1\|2281671_2282607_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|237004
NZ_CP043481.1\|WP_010513886.1\|2300990_2301461_+\|cellulose-synthase-operon-protein-D	unknown	unknown	gnl\|CDD\|281496
NZ_CP043481.1\|WP_010513879.1\|2305949_2307836_+\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NZ_CP043481.1\|WP_110507008.1\|2278433_2279741_+\|GTPase-HflX	unknown	unknown	gnl\|CDD\|274455
NZ_CP043481.1\|WP_154221044.1\|2294602_2297011_+\|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB	unknown	unknown	gnl\|CDD\|377001
NZ_CP043481.1\|WP_110507015.1\|2301684_2303886_+\|glycoside-hydrolase-family-3-protein	unknown	unknown	gnl\|CDD\|185053
NZ_CP043481.1\|WP_110507009.1\|2279854_2280694_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238775
NZ_CP043481.1\|WP_110507016.1\|2304607_2305066_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|377622
NZ_CP043481.1\|WP_010513892.1\|2290090_2291170_+\|endoglucanase	unknown	unknown	gnl\|CDD\|366548
NZ_CP043481.1\|WP_010513890.1\|2292363_2294601_+\|UDP-forming-cellulose-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|274400
NZ_CP043481.1\|WP_154220995.1\|2297013_2300991_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|377509
NZ_CP043481.1\|WP_010513899.1\|2285315_2286605_+\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP043481.1\|WP_010513897.1\|2286779_2287682_-\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
NZ_CP043481.1\|WP_167513885.1\|2282819_2284001_+\|phosphoserine-transaminase	unknown	unknown	gnl\|CDD\|235103

Protein	Function_ID	Function_description	E-value
NZ_CP043481.1\|WP_010513896.1\|2287925_2288897_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	2.71323e-106
NZ_CP043481.1\|WP_010513881.1\|2305062_2305692_+\|NUDIX-hydrolase	gnl\|CDD\|240029	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	8.99622e-56
NZ_CP043481.1\|WP_039735503.1\|2278149_2278434_+\|RNA-chaperone-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	1.08592e-50
NZ_CP043481.1\|WP_110507010.1\|2280779_2281574_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.95043e-130
NZ_CP043481.1\|WP_110507013.1\|2284078_2285230_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|372589	pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase. This is a family of class II aminoacyl-tRNA synthetase-like and ATP phosphoribosyltransferase regulatory subunits.	6.08169e-93
NZ_CP043481.1\|WP_110507011.1\|2281671_2282607_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|237004	PRK11863, PRK11863, N-acetyl-gamma-glutamyl-phosphate reductase; Provisional.	0
NZ_CP043481.1\|WP_010513886.1\|2300990_2301461_+\|cellulose-synthase-operon-protein-D	gnl\|CDD\|281496	pfam03500, Cellsynth_D, Cellulose synthase subunit D.	1.85713e-98
NZ_CP043481.1\|WP_010513879.1\|2305949_2307836_+\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NZ_CP043481.1\|WP_110507008.1\|2278433_2279741_+\|GTPase-HflX	gnl\|CDD\|274455	TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). [Unknown function, General].	2.0629e-168
NZ_CP043481.1\|WP_154221044.1\|2294602_2297011_+\|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB	gnl\|CDD\|377001	pfam03170, BcsB, Bacterial cellulose synthase subunit. This family includes bacterial proteins involved in cellulose synthesis. Cellulose synthesis has been identified in several bacteria. In Agrobacterium tumefaciens, for instance, cellulose has a pathogenic role: it allows the bacteria to bind tightly to their host plant cells. While several enzymatic steps are involved in cellulose synthesis, potentially the only step unique to this pathway is that catalyzed by cellulose synthase. This enzyme is a multi subunit complex. This family encodes a subunit that is thought to bind the positive effector cyclic di-GMP. This subunit is found in several different bacterial cellulose synthase enzymes. The first recognized sequence for this subunit is BcsB. In the AcsII cellulose synthase, this subunit and the subunit corresponding to BcsA are found in the same protein. Indeed, this alignment only includes the C-terminal half of the AcsAII synthase, which corresponds to BcsB.	0
NZ_CP043481.1\|WP_110507015.1\|2301684_2303886_+\|glycoside-hydrolase-family-3-protein	gnl\|CDD\|185053	PRK15098, PRK15098, beta-glucosidase BglX.	1.24752e-72
NZ_CP043481.1\|WP_110507009.1\|2279854_2280694_+\|inositol-monophosphatase	gnl\|CDD\|238775	cd01517, PAP_phosphatase, PAP-phosphatase_like domains. PAP-phosphatase is a member of the inositol monophosphatase family, and catalyses the hydrolysis of 3'-phosphoadenosine-5'-phosphate (PAP) to AMP. In Saccharomyces cerevisiae, HAL2 (MET22) is involved in methionine biosynthesis and provides increased salt tolerance when over-expressed. Bacterial members of this domain family may differ in their substrate specificity and dephosphorylate different targets, as the substrate binding site does not appear to be conserved in that sub-set.	2.50339e-54
NZ_CP043481.1\|WP_110507016.1\|2304607_2305066_+\|cupin-domain-containing-protein	gnl\|CDD\|377622	pfam06172, Cupin_5, Cupin superfamily (DUF985). Family of uncharacterized proteins found in bacteria and eukaryotes that belongs to the Cupin superfamily.	2.21268e-54
NZ_CP043481.1\|WP_010513892.1\|2290090_2291170_+\|endoglucanase	gnl\|CDD\|366548	pfam01270, Glyco_hydro_8, Glycosyl hydrolases family 8.	3.73024e-117
NZ_CP043481.1\|WP_010513890.1\|2292363_2294601_+\|UDP-forming-cellulose-synthase-catalytic-subunit	gnl\|CDD\|274400	TIGR03030, Cellulose_synthase_UDP-forming, cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.	0
NZ_CP043481.1\|WP_154220995.1\|2297013_2300991_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|377509	pfam05420, BCSC_C, Cellulose synthase operon protein C C-terminus (BCSC_C). This family contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown.	1.97732e-84
NZ_CP043481.1\|WP_010513899.1\|2285315_2286605_+\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP043481.1\|WP_010513897.1\|2286779_2287682_-\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	8.97034e-177
NZ_CP043481.1\|WP_167513885.1\|2282819_2284001_+\|phosphoserine-transaminase	gnl\|CDD\|235103	PRK03080, PRK03080, phosphoserine transaminase.	0

>NZ_CP043481.1|WP_010513896.1|2287925_2288897_-|RluA-family-pseudouridine-synthase
MNDTVPPAPVIATTGDAGQRTDRFIANVVEGLSRSRVKSLMESGHLLRDGSPLRDPAEPVRAGMCYEIHIPPAIPATPQGQDIALDILYEDRDLIVLDKPAGMVVHPAPGNEDGTLVNALLAHCGEGLTGIGGERRPGIVHRLDKDTSGIMVAAKTEMAHQALSLAFAERRIDRAYQAICWGVPSPASGSFDGAIGRDRRDRKRMAVIANGGGKMALTHYRVLDTFHGGLAHVECRLATGRTHQIRVHFAHAGHALVGDPVYLRRIPAASRSLPPVAKDAALDFPRQALHARRLGFVHPRSGEEMLFETAPPEDFRHLLSSIA
>NZ_CP043481.1|WP_010513897.1|2286779_2287682_-|RNA-polymerase-sigma-factor-RpoH
MASSASALISGPENNLSKYLRDIRKFPMLSPEEELRLSRRWKDKGDTEAAHKLVTSHLRLVAKIAMGYRGYGLPVGELISEGNIGMMQAVRRFDPDRGFRLATYAMWWIRAAIQEYILHSWSLVKIGTTAAQKKLFFNLRRLKGQMQAIDDGDLQPEQVNKIAQSLGVPEQDVVNMNRRLAAPDHSLNAPLRMDGEGEWQDWLVDDNDNQEETLAQSEEYSGRQALLANAMKSLNDRERHILTERRLKDEPATLEELSHVYNISRERVRQIEVRAFEKVQTAMKAEVASRRAQHTAQAEA
>NZ_CP043481.1|WP_010513899.1|2285315_2286605_+|adenylosuccinate-synthase
MSNVTVIGTQWGDEGKGKIVDWLASRADVVVRFQGGHNAGHTLVVGDQTYKLSLLPSGLVRGKMGVIGNGVVVDPEALLKEIDRVTAQGLKVTPETLKIAENAPLILPVHGALDRAREAARGDRKIGTTGRGIGPAYEDKVARRAIRLCDLAEPETLDWKLDELLLHHNTLLKGLGADTFTKQELLDFLNGVAPRVLPFMAPVWDLLDDSRRSGSRILFEGAQAVMLDVDHGTYPFVTSSNTVAANAGTGAGVGPTSIGFVLGIAKAYTTRVGEGPFPSELHDQMGRTLGERGHEFGTVTGRPRRCGWFDAVLVRRAVRVGGVNGLALTKLDVLDGLDEISICVGYELDGKKITAFPSAPGAQQRIRPVFETMEGWKDSTKGARSWAELPAQAIKYVRRIEELVEAPVTLLSTSPERDDTILMRDPFED
>NZ_CP043481.1|WP_110507013.1|2284078_2285230_+|ATP-phosphoribosyltransferase-regulatory-subunit
MTDDPPFNPALLPAGFVDRLPPEAEAEAAGVETLMRVFAAHGYDRVTPPLLEFEETLLSGSGAAVAEQTFRLMDPDTRRMMALRPDMTPQIARIAATRLPDVPRPLRLAYAGPCILMDSNRGDGERQISQAGVELIGPDQPEADAEIVAIAAECLATLGVQGVSFDLTMPSLTTALVDAGRFDGHVRGMLMRALDRKDAAAVARHGGELAPVLIRLLHAAGPAHGALAELAAVDLPPVVRAHSVRLAATVAAIEARVPGIRLTVDPVEFRGWQYHTGVCVSVYAAGQREELGRGGRYLSNNDEPACGLTLRPDIILRAAPPLPCRTRVFLPWGTSPEVGAALRAGGYATVSALGDEGDAGAEARRLSCMLVVVDGQPVPVDGI
>NZ_CP043481.1|WP_167513885.1|2282819_2284001_+|phosphoserine-transaminase
MSPLPDALTAKPSVRPANPCFSSGPCAKRPGWSLSALSDALVGRSHRSTEGRARLNEVITRSKAILGMPDDWVLGIVPASDTGAVEMVLWSILGTRPVDVLAFESFSATWANDIIAQLKLSDARVLKADYGEIPDLAQVDWARDVVLTWNGTTSGARLPYDAAIPTQRDGLVICDATSAAFAMDLPWEKLDVVTWSWQKVLGGEAAHGMLALSPRAVERLVSTPAPRALPKIFRLTNSKGLIDGIFRGDTINTPSMLCVEDALDGLKWAEGTGGLKGLIARSEANLAAIAEWEAESDWAQFLAPNPKHRSSTAICLRIVAPWFTALDHAGQTAAAKKIVSLLGQEGVAMDVGSYRDAPPGLRLWGGATVETADLRAVLPWLDWAYAQVRAQHA
>NZ_CP043481.1|WP_110507011.1|2281671_2282607_+|N-acetyl-gamma-glutamyl-phosphate-reductase
MSSSGQPTVFIDGEAGTTGLGIRNRLRHLPVTLRSIDPERRKDPDARREMMAAVDIVILCLPDAAAREAVAMADAMGSDAPRILDASTAFRTDPAWVYGFPEMDAAQPAAIRAAARVSNPGCYPTGLIGLLRPLVRAGLVPADYPVCVNAVSGYSGGGRSMIEAHERDGGPAFELYGLGLGHKHMPEMTLYAGLAQPPVFVPSVGHFPQGMIVSVPLHLDRLPGRVGIADLHAALSAHYRGSDRITVAEPCAKLLADTLAGTDRMELRVHGNDALRQVVLTARLDNLGKGASGAALQNVALMLGLEPPPPV
>NZ_CP043481.1|WP_110507010.1|2280779_2281574_-|nucleoside-triphosphate-pyrophosphohydrolase
MHDAPSALQRLLDIMARLRDPQTGCPWDREQDFASIAPYSIEEAYEVADTIAREDWDSLPDELGDLLLQVVYHAQMADEKGMFDFATVARMIGDKMVRRHPHVFGNAPAEAGQWETGKAQERLARNRAGTLDDVPVGLPALLRARKLSARAARTGFDWDTVGEVAAKVDEELDELKVELESGDRAKIFDELGDVLFTLATLARKLDMDPEACLRQANAKFTRRFTAVEHDLAARGLALTDVDVRTMEEGWQAVKRRERAAQPQD
>NZ_CP043481.1|WP_110507009.1|2279854_2280694_+|inositol-monophosphatase
MTARITLADMHKVVDMMRGAASRHVMPSFRCLDRADIRSKSGPLDIVTVADEATERDLTAALRAAWPTALVLGEEAVAADPALLDGLVTADLAFVIDPIDGTANYAAGVPLFGVMVSVVARGDVVGGAIVDPVCDVAVLAARGQGAWLNDRGGVERRLNVAAPVAARDMSGNASWRYLPAPMRDVVTHNLPKVAGSWDFRCAAHEYLMLVDGRCHFLLFNRTMPWDHLAGWLIHAEAGGYSAHFDGSPYRVTDRSGGLLYAPDRASWQALRDLLLTPAA
>NZ_CP043481.1|WP_110507008.1|2278433_2279741_+|GTPase-HflX
MAGLPSSATRAAVILPWERPDRHDDARAAEARLEEAVGLAASIGLVVVCQAVLLLRARRPATLLGGGQVDSLKETVKADNITVVIIDSRLTPVQQRNLERALGCKVIDRTALILDIFGERAATREGTLQVELAHLEYQRSRLVRTWTHLERQRGGFGFLGGPGETQIEADRRMIGDRIVRLKRELEQVRRTRGLHRQARRRVPFPIVALVGYTNAGKSTLFNALTGASVYAQDQLFATLDPTMRGIQLPSGRRVILSDTVGFISDLPTELIAAFRATLEEVAEADIILHVRDVSHPDSASQRTDVIEVLEGMARNGTIEQDWQSRVIEVLNKADLVGGRDAVGARPGNVVISAITGDGLPDLLAAIDERMTRAMEVAAYRVPLAEGAAMAWLYEHGEVTQREDGEDGVEMTVRLSPANRARFEMQFGRVVTCLQD
>NZ_CP043481.1|WP_039735503.1|2278149_2278434_+|RNA-chaperone-Hfq
MAKEPSQNVQDVFLNHVRRSKTPVTIFLVNGVKLQGIITWFDNFSVLLRRDGHTQLVYKHAISTVMPATPVSLFEPPAEAEGTEERAPTDGSPS
>NZ_CP043481.1|WP_010513894.1|2289700_2290039_-|hypothetical-protein
MFNSPPGRTHDALIANSSILQATHGYYETDFITERKHNAFPPNGETATSALTDRKGGEVAFLSRRASTLPQKIPLIIPAEIKREIWKMTGFQYAAIYPKIKRRKIFLNFGAI
>NZ_CP043481.1|WP_010513892.1|2290090_2291170_+|endoglucanase
MLLDFMKLQKHVSGMGRRSFLSVMAATGSIPFLSAAEAGDGTAVNQQWAIFRSKYFHPDGRIIDTGNSGESHSEGQGYGMLFAAAAGDQTAFEAIWVWARNNLQHKTDALFSWRYLEGHNPPVADKNNATDGDLLIALGLARAGKLWKRADYIQDAINIYADVLKHMTMKVGPYTVLLPGAVGFVTKDAVTLNLSYYVMPSLLQAFELSGESQWQTVIENGLRIIGKAQFGEWKLPPDWLSINRQTGNFSIAKGWPPRFSYDAIRVPLYLYWAHMLSPELLADYTRFWNHFGASALPGWVDLTNGSRSPYNAPPGYLAVASCSGLASAGELPTLDNAPDYYSAALTLLVYIARAEGGGM
>NZ_CP043481.1|WP_010513890.1|2292363_2294601_+|UDP-forming-cellulose-synthase-catalytic-subunit
MSEVQSSAPAESWFGRFSNKILSLRGASYVVGALGLCALLAATMVTLSLNEQMIVALVCVAVFFIVGRRKSRRTQVFLEVLSALVSLRYLTWRLTETLDFDTWTQGILGVTLLLAELYALYMLFLSYFQTISPLHRAPLPLPANPDEWPTVDIFIPTYDEALSIVRLTVLGALGIDWPPDKVNVYILDDGRREEFARFAEACGARYIARPDNAHAKAGNLNYAIKHTTGDHILILDCDHIPTRAFLQISMGWMVSDSNIALLQTPHHFYSPDPFQRNLAVGYRTPPEGNLFYGVIQDGNDFWDATFFCGSCAILRRKAIEEIGGFATETVTEDAHTALRMQRKGWSTAYLRIPLASGLATERLITHIGQRMRWARGMIQIFRVDNPMLGSGLKLGQRLCYLSAMTSFFFAIPRVIFLASPLAFLFFSQNIIAASPLAVGVYAIPHMFHSIATAAKVNKGWRYSFWSEVYETVMALFLVRVTIVTMLFPSKGKFNVTEKGGVLEREEFDLTATYPNIIFAIIMALGLLRGLYALIFQHLDIISERAYALNCIWSVISLIILMAAISVGRETKQLRQSHRIEAQIPVTVYDYDGNSSHGITEDVSMGGVAIHLPWREVTPDHPVQVVIHAVLDGEEMNLPATMIRSAQGKAVFTWSISNIQVEAAVVRFVFGRADAWLQWNNYEDDRPLRSLWSLILSIKALFRRKGQMIAHSRPKKKPIALPVERREPTTSQGGQKQEGKISRAAS
>NZ_CP043481.1|WP_154221044.1|2294602_2297011_+|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB
MKMVSLIALLVFATGAQAAPIASKAPAHQPTGSDLPPLPAAAPVAPAAQPSAQAVDPASAAPASDAGSAADAILDNAENAAGVGTDVATVHTYSLQELGAQSALTMRGAAPLQGLQFGIPADQLVTSARLVVSGAMSPNLQPDNSAVTITLNEQYIGTLRPDPTHPAFGPLSFDINPIFFVSGNRLNFNFASGSKGCADPTNGLQWASVSEHSQLQITTIPLPPRRQLARLPQPFFDKTVRQKVVIPFVLAQTFDPEVLKASGIIASWFGQQTDFRGVNFPVFSTIPQTGNAIVVGVADELPAALGRPSVSGPTLMEVANPSDPNGTVLLVTGRDRDEVITASKGIGFGSSALPVASRMDVAPIDVAPRLANDAPSFIPTSRPVRLGELVPVSALQGEGYTPGVLSVPFRVSPDLYTWRDRPYKLNVRFRAPDGPILDVARSHLDVGINNTYLQSYSLREQSSVVDQLLHRVGVGTQNAGVEQHTLTIPPWMVFGQDQLQFYFDAAPLAQPGCRPGPSLIHMSVDPDSTIDLSNAYHITRMPNLAYMASAGYPFTTYADLSRSAVVLPDHPNGTVVSAYLDLMGFMGATTWYPVSGVDIVSADHVSDVADRNLIVLSTLSNSADVSALLANSAYQISDGRLHMGLRSTLSGVWNIFQDPMSVMSNTHPTEVETTLSGGVGAMVEAESPLASGRTVLALLSGDGQGLDNLVQILGQRKNQAKVQGDLVLAHGDDLTSYRSSPLYTVGTVPLWLIPDWYMHNHPFRVIVVGLVGCLLVAAVLVRALFRHAMFRRRQLQEERQKS
>NZ_CP043481.1|WP_154220995.1|2297013_2300991_+|tetratricopeptide-repeat-protein
MNRRYVFSLSAGLLASSCMSAIMPVPVARAQQASTAMTGAQATGGTAAPRQILLQQARFWLQQQQYDNARQALQNAQRIAPDAPDVLEVQGEYQTAMGNREAAADTLRHLQEVAPGSVAANSLSDLLHERSISTGDLSHVRSLAASGHSAEAVAGYQKLFNGGRPPHSLAIEYYQTMAGVPADWDQARAGLAGLVAANPQDYRAQLAFAQTLTYNTSTRMEGLARSKDLQGFRTQAPVEAAAAAQSYRQTLSWLPVTAETQPLMQQWLTAHPDDTALKEHMLHPPGGPPDKAGLARQAGFQQLNSGRLSAAEQSFQSALQINSHDADSLGGMGLVSMRQGDAAEARRYFQEAMAADPKTADRWRPALAGMEISGDYAAVRQLIAAHQYTEAKQRLTSLARQPGQFTGATLMLADLQRTTGQIDASEQEYRSVLARDPNNQLALMGLARVDMAQGNTAEARQLLSRVGPQYATEVGEIEVTGLMAAASHTSDSARKVAILREAMTQAPRDPWVRINLANALQQQGDVAEAGRVMQPILANPVTAQDRQAGILYTYGAGNDAATRRLLSGLSPEDYSPAIRSIAEEMQIKEDLASRLSMVPNPVPLIREALAPPDPTGARGVAVADLFRQRGDMIHARMALRIASTRTIDLSPDQRLAYATEYMKISNPVAAARLLAPLGDGSGSGAGNALLPEQQQTLQQLRMGIAVAQSDLLNQRGDQAQAYDHLAPALRADPEATSPKLALARLYNGEGKSSKALDIDLAVLRHNPQDLDARQAAVQAAVNSGRKSLATHLAMDGVQESPMDARAWLGMAVADQADGHGHRTIADLRRAYDLRLQQVEGSRSAFGPAATEEDALAPPSSNPFRHHGYGRQTELGAPVTGGSYSMEATSPEAADQMLSSISGQINTLRENLAPSIDGGLGFRSRSGEHGMGRLTEANIPIVGRLPLQAGESSLTFSITPTMIWSGDLNAGSVYDVPRYGTNMATEAYNQYVNSLSQNNSSSSLRTQQIQGGQGEAGFAPDVQFSNSWVRADVGASPIGFPITNVLGGVEFSPRVGPVTFRVSAERRSITNSVLSYGGLRDPNYNSALGRYALNHYGSQLASQWGQEWGGVVTNHFHGQVEATLGNTILYGGGGYAIQTGKNTRSNNEREAGIGANTLVWHNANMLVRIGVSLTYFGYANNQDFYTYGQGGYFSPQSYYSATVPIRYAGQHKRLDWDVTGSVGYQVFHEHSSPFFPTSSLLQSGAQYIADSYMQNATASDYLSEETVDRAYYPGDSIASLTGGFNARVGYRFTHNLRLDLSGRWQKAGNWTESGAMISVHYLIMDQ
>NZ_CP043481.1|WP_010513886.1|2300990_2301461_+|cellulose-synthase-operon-protein-D
MTTFNAKPDFSLFLQALSWEIDDQAGIEVRNDLLREVGRGMAGRLQPPLCNTIHQLQIELNALLGMINWGYVKLELLAEEQAMRIVHEDLPQVGSAGEPSGTWLAPVLEGLYGRWITSQPGAFGDYVVTRDVDAEDLNSVPTQTIILYMRTRSNSN
>NZ_CP043481.1|WP_110507015.1|2301684_2303886_+|glycoside-hydrolase-family-3-protein
MKLSRKIFLLSAVACGMMVAHDAAHAAHHAPGDPADEKARQVLAHMSPEDKMSLLFSVDGGGFNGSVAPPGGLGSAAYLRAPAGSGLPDLQISDAGLGIRNPAHIRKDGAAVSLPSGLSTASSWDMDMAREAGAMIGREAWQSGFNVLLGGGADLTRDPRGGRNFEYAGEDPLQTGRMVGSTIAGVQSQHVISTLKHYAMNDLETSRMTMSADIDPVAMRESDLLGFEIALETGHPGSVMCSYNRVNDLYACENPYLLNTTLKQDWHYPGFVMSDWGATHSSARAALAGLDQESAGDHADARPYFQALLAADVKAGRVPQSRIDDMAQRIVRSLFAQGLVDHPPRRAPLDVVTDTLVAQRDEEEGAVLLRNEGNVLPLSPTARIAVIGGHADVGVISGGGSSQVDPIGGEVVKGPGKKDWPGDPVYFPSSPLKAMRAEAPSAHITYDPGTNIAAAVRAARAADVAVVYATQFTFEGMDAPNMHLDGNADALIAAVAAANPRTVVVMETGDPVLMPWNSSVAGVLEAWFPGSGGGTAIARLLFGKVAPSGHLTMTFPQAESQLAHPDIAGVTANNVFEMQFHTDQELVYDEGSDVGYRWFDRNHLKPLYPFGYGLTYTTFATDGLAAGYHHKQLTVTFNVRNTGTRPGVDVPQVYVGLPDGGARRLGGWQRVTLAPGESRQVSVQVDPRLLAHFDGRHDRWAIPSGRFRVWLGTSAVDDSQQVSVHLPARTLAP
>NZ_CP043481.1|WP_110507016.1|2304607_2305066_+|cupin-domain-containing-protein
MIDLRDPSTPPESVRQALGLQPHPEGGSYREIWRDTPADGPRGAVSTIMFLLAAGERSHWHRVDAAEIWCWQGGSPLVLEIAPRADGPIERVTIGPLPEQGQVMQAVVPAGAWQAAFPEGAWSLTGCQVAPAFVFSSFELAPPGWSPQGEAE
>NZ_CP043481.1|WP_010513881.1|2305062_2305692_+|NUDIX-hydrolase
MTFPKWLVWARDLQALAQSGLTYAESPFDRERYESIRQIAAEMMAAGSAADMERVLDLFTRQDGYATPKIVVRAAVFDERQRILLVREVLDHDRWTLPGGWADVNLSPVENTVKEVREESGYDVRVTRLAAVWDRDRQGHPPAPFSCYTLYFICELTGGQAQTSVETSEIGWFGPDEIPADLSLGRVLPQQIARMFDHVRNPGLPTDFD
>NZ_CP043481.1|WP_010513879.1|2305949_2307836_+|molecular-chaperone-HtpG
MTEHTTTTPPEATGEQHEFSAEVGRLLDLVVHALYSEREIFLRELVANAADATDKRRFEALTDGARALPDDAKIRINPDKDARLLTISDDGAGMSKEDLARNLGTIARSGTRAFGEELANAKPEDKPSLIGQFGVGFYAAFMVADRVDVISRRAGSDEAWRWSSTGKGNYTISPATRDKAGTDIILHIKEDANDFLDSWQLETIVRKWADHISWPITIVKDDGEEASANKGTALWRKPRGEIDEEQLNEFYRHVSHNFDTPWATLHWHAEGMLEFSALLFIPGSKPFEFAEPVRESQIRLHVRRMFITDDAGLLPPWLRFVTGVVDTEDLPLNVSREMLQATPVLARIRKAVTNRVISELKTRSKDEADFEKFWDNFGPTFKEGIWDDAEHRTELAAIARFRSSTQDGWTTLDAYLERKKPEQEAIYYLTGDRTEMLPSSPQLEGFRARGIEVLLLSDPVDSFWPDRLGVYKDTPLRNISQFQTDLEKFGAPEETQAEKDTLEVVLPALKDALGDAVSDVKGTNRLVNSAVVLAAPESGPDLQMIRLMKRSGQQVPDTAPVLQVNPAHPLIADLATRVKNGDPVQDIALTLMDMARIQDGESPKDPTGFAQRLTTILTRLPLSDGPQG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP043481_3	3.1\|2289471\|35\|NZ_CP043481\|CRISPRCasFinder	2289471-2289505	35	MG944235	Xanthomonas phage XPV2, complete genome	2251-2285	8	0.771
NZ_CP043481_3	3.1\|2289471\|35\|NZ_CP043481\|CRISPRCasFinder	2289471-2289505	35	MG944236	Xanthomonas phage XPV3, complete genome	41225-41259	8	0.771
NZ_CP043481_3	3.1\|2289471\|35\|NZ_CP043481\|CRISPRCasFinder	2289471-2289505	35	MG944234	Xanthomonas phage XPV1, complete genome	41792-41826	8	0.771
NZ_CP043481_3	3.1\|2289471\|35\|NZ_CP043481\|CRISPRCasFinder	2289471-2289505	35	NC_014155	Thiomonas intermedia K12 plasmid pTINT02, complete sequence	2923-2957	10	0.714
NZ_CP043481_3	3.1\|2289471\|35\|NZ_CP043481\|CRISPRCasFinder	2289471-2289505	35	MG944231	Xanthomonas phage XPP6, complete genome	43853-43887	11	0.686
NZ_CP043481_3	3.1\|2289471\|35\|NZ_CP043481\|CRISPRCasFinder	2289471-2289505	35	MG944232	Xanthomonas phage XPP8, complete genome	2395-2429	11	0.686
NZ_CP043481_3	3.1\|2289471\|35\|NZ_CP043481\|CRISPRCasFinder	2289471-2289505	35	MG944228	Xanthomonas phage XPP2, complete genome	12129-12163	11	0.686
NZ_CP043481_3	3.1\|2289471\|35\|NZ_CP043481\|CRISPRCasFinder	2289471-2289505	35	MG944229	Xanthomonas phage XPP3, complete genome	15283-15317	11	0.686
NZ_CP043481_3	3.1\|2289471\|35\|NZ_CP043481\|CRISPRCasFinder	2289471-2289505	35	MG944227	Xanthomonas phage XPP1, complete genome	19414-19448	11	0.686
NZ_CP043481_3	3.1\|2289471\|35\|NZ_CP043481\|CRISPRCasFinder	2289471-2289505	35	MG944230	Xanthomonas phage XPP4, complete genome	20509-20543	11	0.686
NZ_CP043481_3	3.1\|2289471\|35\|NZ_CP043481\|CRISPRCasFinder	2289471-2289505	35	MG944233	Xanthomonas phage XPP9, complete genome	19299-19333	11	0.686

1. spacer 3.1|2289471|35|NZ_CP043481|CRISPRCasFinder matches to MG944235 (Xanthomonas phage XPV2, complete genome) position: , mismatch: 8, identity: 0.771

gaaagcccgccgcaaggcgggtttttcgtatgtac	CRISPR spacer
aaaaacccgccgaaaggcgggttttttttacgatc	Protospacer
.***.******* *************. **.*  *

2. spacer 3.1|2289471|35|NZ_CP043481|CRISPRCasFinder matches to MG944236 (Xanthomonas phage XPV3, complete genome) position: , mismatch: 8, identity: 0.771

gaaagcccgccgcaaggcgggtttttcgtatgtac-	CRISPR spacer
aaaaacccgccgaaaggcgggtttttt-tacgatct	Protospacer
.***.******* *************. **.*  *

3. spacer 3.1|2289471|35|NZ_CP043481|CRISPRCasFinder matches to MG944234 (Xanthomonas phage XPV1, complete genome) position: , mismatch: 8, identity: 0.771

gaaagcccgccgcaaggcgggtttttcgtatgtac	CRISPR spacer
aaaaacccgccgaaaggcgggttttttttacgatc	Protospacer
.***.******* *************. **.*  *

4. spacer 3.1|2289471|35|NZ_CP043481|CRISPRCasFinder matches to NC_014155 (Thiomonas intermedia K12 plasmid pTINT02, complete sequence) position: , mismatch: 10, identity: 0.714

gaaagcccgccgcaaggcgggtttttcgtatgtac	CRISPR spacer
caaaacccgccgcgaggcgggtttttttcatccgg	Protospacer
 ***.********.************. .** ..

5. spacer 3.1|2289471|35|NZ_CP043481|CRISPRCasFinder matches to MG944231 (Xanthomonas phage XPP6, complete genome) position: , mismatch: 11, identity: 0.686

gaaagcccgccgcaaggcgggtttttcgtatgtac	CRISPR spacer
aaaaacccgccgaaaggcgggttttttacgatctc	Protospacer
.***.******* *************....  . *

6. spacer 3.1|2289471|35|NZ_CP043481|CRISPRCasFinder matches to MG944232 (Xanthomonas phage XPP8, complete genome) position: , mismatch: 11, identity: 0.686

gaaagcccgccgcaaggcgggtttttcgtatgtac	CRISPR spacer
aaaaacccgccgaaaggcgggttttttacgatctc	Protospacer
.***.******* *************....  . *

7. spacer 3.1|2289471|35|NZ_CP043481|CRISPRCasFinder matches to MG944228 (Xanthomonas phage XPP2, complete genome) position: , mismatch: 11, identity: 0.686

gaaagcccgccgcaaggcgggtttttcgtatgtac	CRISPR spacer
aaaaacccgccgaaaggcgggttttttacgatctc	Protospacer
.***.******* *************....  . *

8. spacer 3.1|2289471|35|NZ_CP043481|CRISPRCasFinder matches to MG944229 (Xanthomonas phage XPP3, complete genome) position: , mismatch: 11, identity: 0.686

gaaagcccgccgcaaggcgggtttttcgtatgtac	CRISPR spacer
aaaaacccgccgaaaggcgggttttttacgatctc	Protospacer
.***.******* *************....  . *

9. spacer 3.1|2289471|35|NZ_CP043481|CRISPRCasFinder matches to MG944227 (Xanthomonas phage XPP1, complete genome) position: , mismatch: 11, identity: 0.686

gaaagcccgccgcaaggcgggtttttcgtatgtac	CRISPR spacer
aaaaacccgccgaaaggcgggttttttacgatctc	Protospacer
.***.******* *************....  . *

10. spacer 3.1|2289471|35|NZ_CP043481|CRISPRCasFinder matches to MG944230 (Xanthomonas phage XPP4, complete genome) position: , mismatch: 11, identity: 0.686

gaaagcccgccgcaaggcgggtttttcgtatgtac	CRISPR spacer
aaaaacccgccgaaaggcgggttttttacgatctc	Protospacer
.***.******* *************....  . *

11. spacer 3.1|2289471|35|NZ_CP043481|CRISPRCasFinder matches to MG944233 (Xanthomonas phage XPP9, complete genome) position: , mismatch: 11, identity: 0.686

gaaagcccgccgcaaggcgggtttttcgtatgtac	CRISPR spacer
aaaaacccgccgaaaggcgggttttttacgatctc	Protospacer
.***.******* *************....  . *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage