CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP046038	Lactobacillus sakei strain CBA3614 plasmid unnamed1, complete sequence	0 crisprs	csa3	1
NZ_CP046037	Lactobacillus sakei strain CBA3614 chromosome, complete genome	1 crisprs	DEDDh,cas3,csa3,DinG	6
NZ_CP046039	Lactobacillus sakei strain CBA3614 plasmid unnamed2, complete sequence	0 crisprs	NA	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

37219 : 52259

Enterococcus_phage(22.22%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154255312.1\|37219_39805_+	AAA family ATPase	A0A1B1IUG5	uncultured_Mediterranean_phage	2.1e-44	28.7
WP_035147318.1\|40021_40603_+	recombinase family protein	M9Q1K0	Clostridium_phage	4.1e-20	34.9
WP_080752786.1\|42147_42600_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_094365906.1\|42606_44775_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	2.8e-255	60.2
WP_154255313.1\|44881_45808_+	ribonucleoside-diphosphate reductase	A0A2H4P8A9	Corynebacterium_phage	1.0e-36	32.1
WP_016265840.1\|45822_46773_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	3.2e-99	55.0
WP_154255314.1\|46913_47843_+\|transposase	IS30 family transposase	H7BW47	unidentified_phage	1.1e-24	34.4
WP_052039314.1\|47885_48146_+	hypothetical protein	NA	NA	NA	NA
WP_015474696.1\|48278_49610_-	NAD(P)/FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.9e-20	24.7
WP_006844821.1\|49771_50419_-	DsbA family oxidoreductase	NA	NA	NA	NA
WP_006844822.1\|50437_51382_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	7.7e-77	47.9
WP_080280589.1\|51466_51601_-	hypothetical protein	NA	NA	NA	NA
WP_006844823.1\|51600_51924_-	thioredoxin family protein	NA	NA	NA	NA
WP_015474701.1\|51944_52259_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	2.0e-13	41.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046037

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046037_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046037_1

976467-977026

Orphan

Consensus_repeat	Method
TTAGATGTTTCAAATTGGGATAC	CRISPRCasFinder
ATTACCGAATTAGATGTTTCAAATTGGGATAC	PILER-CR

7 spacers

The CRISPR arrays of NZ_CP046037_1

>merge|NZ_CP046037|1|976467-977026|CRISPRCasFinder,PILER-CR
CTAAATAGTACGAATTGGGACACTTCTAATATTCAAAATATGAATAACACATTTTTCAATTGTACGGCCTTAACGAACTTAGATGTTTCAAAATGGCAGACGGCAAAAATGACTAATCTGGGGAGTACCTTTTCACAATCGGGCATTACTGTTTTAGATGTTTCAAATTGGGATACCAGTCACGTTACTAATTTAAGTAGTACTTTTCTGAATACTAGTATTGCCGAATTAGATGTTTCGAATTGGGATACAAGCCAAGTGACGACAATGGCTTATACTTTTTCGGGATGTTCAAGACTTGAAACCTTAGATGTCTCAAAATGGCAGCTCGGCAAAAATACATCGTTGTCTTACACGTTCAGCGGTGATCAAAGATTAACGCAGTTAGACGTTTCTAAGTGGCAAACCGCTAATGTGACGAATATGGCTTCAACATTTTCCGGGACTGTCGGTGTTAAGACTTTAGCGGTTAAAGATTGGCAGACCACTAAAGTGACAACCATGGCGGGCATGTTTGCCAAGAGTGGCGTTGATCAGTTAGAAATTGCTGATTGGGATAC

>NZ_CP046037|1|1|976467-977026|CRISPRCasFinder
CTAAATAGTACGAATTGGGACAC	TTCTAATATTCAAAATATGAATAACACATTTTTCAATTGTACGGCCTTAACGAAC
TTAGATGTTTCAAAATGGCAGAC	GGCAAAAATGACTAATCTGGGGAGTACCTTTTCACAATCGGGCATTACTGTT
TTAGATGTTTCAAATTGGGATAC	CAGTCACGTTACTAATTTAAGTAGTACTTTTCTGAATACTAGTATTGCCGAA
TTAGATGTTTCGAATTGGGATAC	AAGCCAAGTGACGACAATGGCTTATACTTTTTCGGGATGTTCAAGACTTGAAACC
TTAGATGTCTCAAAATGGCAGCT	CGGCAAAAATACATCGTTGTCTTACACGTTCAGCGGTGATCAAAGATTAACGCAG
TTAGACGTTTCTAAGTGGCAAAC	CGCTAATGTGACGAATATGGCTTCAACATTTTCCGGGACTGTCGGTGTTAAGACT
TTAGCGGTTAAAGATTGGCAGAC	CACTAAAGTGACAACCATGGCGGGCATGTTTGCCAAGAGTGGCGTTGATCAG
TTAGAAATTGCTGATTGGGATAC

>NZ_CP046037|1|1|976545-976717|PILER-CR
TTAGATGTTTCAAAATGGCAGACGGCAAAAAT	GACTAATCTGGGGAGTACCTTTTCACAATCGGGCATTACTGTTTTAGA
TGTTTCAAATTGGGATACCAGTCACGTTACTA	ATTTAAGTAGTACTTTTCTGAATACTAGTATTGCCGAATTAGA
TGTTTCGAATTGGGATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046037.1\|WP_154255228.1\|970931_973055_+\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|223616
NZ_CP046037.1\|WP_154255226.1\|968191_969751_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP046037.1\|WP_025016108.1\|965501_966410_+\|ribokinase	unknown	unknown	gnl\|CDD\|274000
NZ_CP046037.1\|WP_011373916.1\|969846_970536_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|172606
NZ_CP046037.1\|WP_154255232.1\|982739_984659_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375450
NZ_CP046037.1\|WP_025016099.1\|982223_982508_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP046037.1\|WP_035145629.1\|978028_978901_+\|WxL-domain-containing-protein	unknown	unknown	gnl\|CDD\|372694
NZ_CP046037.1\|WP_094365873.1\|984668_985658_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375451
NZ_CP046037.1\|WP_025016102.1\|978974_980012_+\|DUF916-and-DUF3324-domain-containing-protein	unknown	unknown	gnl\|CDD\|371730
NZ_CP046037.1\|WP_025016109.1\|965086_965482_+\|D-ribose-pyranase	unknown	unknown	gnl\|CDD\|183318
NZ_CP046037.1\|WP_025016096.1\|985789_986092_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|366278
NZ_CP046037.1\|WP_082267685.1\|981781_982231_+\|DUF3324-domain-containing-protein	unknown	unknown	gnl\|CDD\|371730
NZ_CP046037.1\|WP_025016101.1\|981178_981742_+\|DUF916-domain-containing-protein	unknown	unknown	gnl\|CDD\|368712
NZ_CP046037.1\|WP_016264496.1\|973090_973627_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225786
NZ_CP046037.1\|WP_082267606.1\|980904_981087_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372694
NZ_CP046037.1\|WP_025016105.1\|974497_975490_+\|choloylglycine-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238303
NZ_CP046037.1\|WP_035145621.1\|966474_967497_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP046037.1\|WP_011373914.1\|967640_968195_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP046037.1\|WP_154255230.1\|980230_980908_+\|cell-surface-protein	unknown	unknown	unknown
NZ_CP046037.1\|WP_025016106.1\|973683_974301_-\|DUF1361-domain-containing-protein	unknown	unknown	gnl\|CDD\|369208

Protein	Function_ID	Function_description	E-value
NZ_CP046037.1\|WP_154255228.1\|970931_973055_+\|AAA-domain-containing-protein	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP046037.1\|WP_154255226.1\|968191_969751_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.22709e-66
NZ_CP046037.1\|WP_025016108.1\|965501_966410_+\|ribokinase	gnl\|CDD\|274000	TIGR02152, Putative_ribokinase, ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not. [Energy metabolism, Sugars].	2.55136e-126
NZ_CP046037.1\|WP_011373916.1\|969846_970536_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|172606	PRK14116, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	1.12494e-164
NZ_CP046037.1\|WP_154255232.1\|982739_984659_+\|hypothetical-protein	gnl\|CDD\|375450	pfam17965, MucBP_2, Mucin binding domain. This domain is found in bacterial cell surface proteins that interact with mucins. The archetypal member of this family is the Mub-R5 B1 domain. This domain has a beta-grasp fold.	5.73538e-12
NZ_CP046037.1\|WP_025016099.1\|982223_982508_+\|hypothetical-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.51461e-06
NZ_CP046037.1\|WP_035145629.1\|978028_978901_+\|WxL-domain-containing-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	1.3377e-16
NZ_CP046037.1\|WP_094365873.1\|984668_985658_+\|hypothetical-protein	gnl\|CDD\|375451	pfam17966, Mub_B2, Mub B2-like domain. This entry corresponds to the Mub B2 domain. This domain is related to the Mub B1 domain pfam17965. This domain may be involved in mucin binding. This domain is often found associated with the related pfam17965 in bacterial cell surface proteins.	5.60419e-17
NZ_CP046037.1\|WP_025016102.1\|978974_980012_+\|DUF916-and-DUF3324-domain-containing-protein	gnl\|CDD\|371730	pfam11797, DUF3324, Protein of unknown function C-terminal (DUF3324). This family consists of several hypothetical bacterial proteins of unknown function.	5.18202e-43
NZ_CP046037.1\|WP_025016109.1\|965086_965482_+\|D-ribose-pyranase	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	4.56237e-74
NZ_CP046037.1\|WP_025016096.1\|985789_986092_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|366278	pfam00746, Gram_pos_anchor, LPXTG cell wall anchor motif.	6.9213e-05
NZ_CP046037.1\|WP_082267685.1\|981781_982231_+\|DUF3324-domain-containing-protein	gnl\|CDD\|371730	pfam11797, DUF3324, Protein of unknown function C-terminal (DUF3324). This family consists of several hypothetical bacterial proteins of unknown function.	1.60153e-15
NZ_CP046037.1\|WP_025016101.1\|981178_981742_+\|DUF916-domain-containing-protein	gnl\|CDD\|368712	pfam06030, DUF916, Bacterial protein of unknown function (DUF916). This family consists of several hypothetical bacterial proteins of unknown function.	3.84271e-31
NZ_CP046037.1\|WP_016264496.1\|973090_973627_+\|hypothetical-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	4.18527e-14
NZ_CP046037.1\|WP_082267606.1\|980904_981087_+\|hypothetical-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	0.000279569
NZ_CP046037.1\|WP_025016105.1\|974497_975490_+\|choloylglycine-hydrolase-family-protein	gnl\|CDD\|238303	cd00542, Ntn_PVA, Penicillin V acylase (PVA), also known as conjugated bile salt acid hydrolase (CBAH), catalyzes the hydrolysis of penicillin V to yield 6-amino penicillanic acid (6-APA), an important key intermediate of semisynthetic penicillins. PVA has an N-terminal nucleophilic cysteine, as do other members of the Ntn hydrolase family to which PVA belongs. This nucleophilic cysteine is exposed by post-translational prossessing of the PVA precursor. PVA forms a homotetramer.	1.30921e-149
NZ_CP046037.1\|WP_035145621.1\|966474_967497_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.93039e-104
NZ_CP046037.1\|WP_011373914.1\|967640_968195_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	3.48625e-10
NZ_CP046037.1\|WP_025016106.1\|973683_974301_-\|DUF1361-domain-containing-protein	gnl\|CDD\|369208	pfam07099, DUF1361, Protein of unknown function (DUF1361). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.	1.89048e-27

>NZ_CP046037.1|WP_025016105.1|974497_975490_+|choloylglycine-hydrolase-family-protein
MCTSLTYSTVDGHHFLARTMDFSFELNGNPLFLPRQHQWQPVLEKQAIQNQYALMGAGAKLGDQYLVADGFNEHGLGCAELYFAHAAVYEPQPVPNKLNLVAEEFIVWVLGNYQTLEEVAADLDNVRIIESDQGVMGANQPLHWILSDRSGKTMVIEPRGNGLQLIDDPVGVMTNTPDLDWHIKNLSNYLNLQPQPFMERPFGNYQAGPFSQGTGTQALPGSYTPPDRFVRAAYSRQYMPEANNVAEGVNHILHILDNVTIPKGVNIGSGGSSDYTQYQGISGLNNLAYYMVNYDNRHVYQTNLTTDLIENQKEPVIYHLPQGQQNTILN
>NZ_CP046037.1|WP_025016106.1|973683_974301_-|DUF1361-domain-containing-protein
MSKKVLTIHAIILLFFALILLYQSRFAFLIWNIILALIPFDLSLLGRLFKNSRWRYLIGVVWLLFFPNALYMITDFSHLSSIGVGLSTAFQFVEYAILAGGIFVGVTLGLTSLFILYPLFIPNYQRLVNQAATFGVLSVCSSVAIYIGRFLRINSWDVFYQLHTTIASVLGVLNQSDFWIFVIAFSILQLILMLMGYQLAQLDDL
>NZ_CP046037.1|WP_016264496.1|973090_973627_+|hypothetical-protein
MLSKNISNKLRQATGVNGLLSLILGLLILFLPGQSAMGVTVMVGVVFIIIGLFDILSIFKEVDENTWVRLGHLLLGLLYLIVGIFVCVNLAASATYLFLLVGIFVGITWLVEGFVELGTVRLAVSKGWTIFSAVLSIVAGIILLMTPLYGAVMLWTLLGAILVVLGIFKVAHYLAWQK
>NZ_CP046037.1|WP_154255228.1|970931_973055_+|AAA-domain-containing-protein
MANMYGNDPFFNNDMDDIFNQVFRRMGNSESARYVINGRELSPDEFAQYRATGKLPNREKEIEIKQNGEHALKKGGILEKLGRNLTQEARDGLLDPVIGRYNEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQEIVAGKVPEAIKDKEIYSIDLSSLEAGTQYRGSFEENIKNLIKEVKAAGNVILFFDEIHQILGIGSTGGEDGGKGLADIIKPALSRGELTVIGATTQDEYRNTILKNAALARRFNDVLVNEPSAADTVKILQGIKGLYEKHHHIELPDDVLKAAVDYSAQYIPQRTLPDKAIDLLDMTAAHLAAKRPETDKAKLAAELKQLEADKAAAVEAENYQAAEELKVKIEKIKAQLATDDQHAAEVIATVDDIAQSVERLTGIPVAKMGSNDIQRLKNLGQRLKDKVIGQDEAVEMVARAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNKEAIIRLDMSEYADRTAISKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLFDEIEKADPQVLTLLLQVMDDGRLTDGQGNVIDFKNTVIIATSNAGFGNEKLTMNDQEDAKLLDKLAPYFRPEFLNRFNGIVEFTHLTKADLSQIVDLMLTNVEQTLAKKELTLVVSKEAKDWLMEEGYDEAMGARPLRRVIEQQIRDKVTDFYLDHADVKDLKADLVDDQIVIQAVDSEN
>NZ_CP046037.1|WP_011373916.1|969846_970536_+|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MAKLVFIRHGQSEWNLSNQFTGWVDVNLSEEGVRQAQNAGALLKKEGILFDQAYTSVLTRAIKTLHYALEGSDQLWIPETKSWRLNERHYGALQGQNKAEAAEKWGDEQVHIWRRSYDTLPPLLDASDEGSAANDRRYAHLDPKAIPGGENLKVTLERVIPFWEDEIAPKLIDGQNIIVAAHGNSLRALTKYIENISDEDIMDVEMATGEPVVYDLDENLNVVSKKKLN
>NZ_CP046037.1|WP_154255226.1|968191_969751_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MKKTTNRWIALVAMSLGVFMGLLDVTVVNVALPSMAVDFKTTFSNLQWVLNAYTLMYAVSLLIVSKLGDMFGRKKIFIMSMILFTAASVVNGLAPNLLVLDIGRAIQAIGGSGMMSLSMALVASNFEGRERGTALGILGSIIGFSTAIGPLVGGFLVESFGWPSIFFVNLPVGIISVYLVIRNVKETPAYGAGESIDFMGMFLSAIGLFSGIYGLIQKEQHMHWAWTDMRIMGWLVASVLILALFVFVELKAKAPMMNLTLLTNRHFVGVVILAFSLGAGIFALAAYQTSLMQNYMGYSAFSTGVHQLPMSLWSLVLGPFTGVLGYKFGKKWLIAFGFTVSALGLLIFRQVTTTDFTYMQLLPLLALTGLGNAIINPMINTAAMDNINPQEIGMASGLLNVFRQIGITVGVVILGLSQTNAYESSLSTGFSGSSIPKAAATGIHQSLVEAGAFSGHAIAWGQQLVKTPYAAKVQQMVVTAFDKGMIAVVTTSLVLMVIAILAALFLLKETKSVDQKPQK
>NZ_CP046037.1|WP_011373914.1|967640_968195_+|PadR-family-transcriptional-regulator
MYELLMLSALMSRNMSGYKLRIILENAMLPRRKISNGVLYPLLDKLENKGCIGFDEADQDSRGTKIAHITEEGRRYFAELMTKPVAHDAKWDDAYRFKMRGMHYIDSEEQISILQDYRNELAEDLHVYLGIKNHLTDLRDEEGTNTNYYQWQVRSMDFVITTLKAKVDWLEAQIKEIEKMEIVK
>NZ_CP046037.1|WP_035145621.1|966474_967497_+|LacI-family-transcriptional-regulator
MGEVNVVRKVTIKDVAALAQTSVTTVSLILNNKGQRFSAETIARVRAAREKISYEPDYFAQNMVNKETKTIAVLVPDINNPFFSQFIQGVEEVAYQYDFIPLIYSAGQNNQKVNYYLKELVRRNVDGFILAVSHIEEETLEGHLKQRKIPYILLDQSEKQHQSDEIAVADTEGGRMAANYLIEKGHRQIGIVLPEQRAWNIEQRFIGYQAALVSHQITVNPDWQITTPLSKQGGYQVAQQVIDSGVSAVFAVNDELAIGLARGLAELGHAVPESISIIGYDDIDWCEYVTPRLTTIKQPILALGQEATRLLLNRIEKPTLGMQQKMLSVELVERDSVQAQ
>NZ_CP046037.1|WP_025016108.1|965501_966410_+|ribokinase
MKKVIVLGSTNVDTILNVQRFPQPGETLAMDGRAVAGGGKGANQAIAAVRSGAQTAFISKVGKEGAADFMIDTFKKDGMNVDHVRCSETAGTGQAYIMVDAQGQNSILIYGGANQDVTVEDVHEAETAIKAADRIVAQFEVPIPAIIEAFKIARANGVQTILNPAPAIKNIPAELLAVTDMIVPNETEAEIITGIKVTDEASMQANAEAMFKLGIKVVIITVGSKGSFYATPTATGFVPAFKVNAVDTTAAGDTFIGALSTKLELDYSNIEAAMTYANKASSIAVQTKGAQNSIPYEKDIQL
>NZ_CP046037.1|WP_025016109.1|965086_965482_+|D-ribose-pyranase
MRKTKVINTQISSVISDMGHFDTLSIGDAGMPVPAGTKKIDVAIENGVPSFIQVLTNILSELEVQKVYLANEIKTANPEQLAAIKALIGETPIEFIDHSQMKQDLNKAKAFVRTGEMTPYSNIILESGVVF
>NZ_CP046037.1|WP_035145629.1|978028_978901_+|WxL-domain-containing-protein
MSQPVTSNTVDMNVVQSEHQLTIRYVDLDEDLSQPASAGTQIAAPITVSGKTGTALSTLLPGQQVAPKVIEGYTIYSVSEDPDLKPENWQKAYRDDPQIGDQDRIITYGYKKAMLSIDAPSSWEFGDYNNKPMDRTYYLNHNQGTPQAVTVTDNYGVQNWQLQVSQAKPFVDSEQHELTDAKWAFSNGNVKTLSNTDVGTVTNNSEHFTLASGQSATLMTMTKSGHFQSDSPDTSDPENPYTQVGQGQWAYRFGDEKSADYSIGLNVPATTKRYTGHYRTKLTWSLSVGP
>NZ_CP046037.1|WP_025016102.1|978974_980012_+|DUF916-and-DUF3324-domain-containing-protein
MRLRKWTTGLAVGLFGWLLLASNQPVSAAQEHIDFEVEKVKSNRQVDQENRFFDLGIEPGKKETIQVLVHNFSDKNIKVHSEIDNSLTQQGGGIIYRPTKDGIIKETSHTLMDVAKVHRADRVITLGPNEVKKVSATITMPSEQTKGMIYGAWHFIEYGQKETDNHSNVSGSYAYNMGIVLRGKPYEIYPELKYQGVNPTVRNGHPALGIQLNNTKPMAIKNAKVKAVVYKNGFFKDKRVYETDSVDVAPNSQWTVPISWAFDRLKPGRYNISISVKGNSYWNQLPMSWHFRKKITINQQQADKINQASVKKPVNKWAYVATASGILMLVSFWFVYRVLKLTRGL
>NZ_CP046037.1|WP_154255230.1|980230_980908_+|cell-surface-protein
MKFTKLTSTVLTASTLLAILAPATIASAATPKDDAAANGGTKLPMTDTTDAGISFGDTHDNGNSGYLRLQMVPKTLDFGNHAKYDAAHTNFDATGANLGVVGNDTHASYDQQDSNKTEILTTSDANLKAVQGTAWATVVDKQVENPELAAATPKANTAGDWKLTVSADGDGLKAGGHTIVDANLVFGNTKYGRTADIYGLTNQDQDNDGYTALGQQMQHTQNQLA
>NZ_CP046037.1|WP_082267606.1|980904_981087_+|hypothetical-protein
MNLSTPNEEKVVGTAAKDAGDGANVFGWNPSDIRLALNGSNDVATGEYHAGLTWTLNTTI
>NZ_CP046037.1|WP_025016101.1|981178_981742_+|DUF916-domain-containing-protein
MFKRLNMLWFCLILVDLLTVQTSNPVFAKSEGLAIPAEPKATFMLRPELPKDNLGCKRLGYFNLKLKRGQQRTVFLKVFNPTAQPLTIYGRVKDATTNDNATVDYLGANPIDRQLLKQPGSQLVKVPRATKLQPNETKRLKVTIQAPAKGFKGQKATAINLSTNQLAKHNAVENHYVYAITLILNGR
>NZ_CP046037.1|WP_082267685.1|981781_982231_+|DUF3324-domain-containing-protein
MKTRFVKQKRAAISVAIANPNPAYLKSATVKVDLQNQQWSLIRYQDQKSNRKIAPNSRFYEDVPLGGKRLVAGVYRMTLTIKTAHQQQIIHKNIAISKGQARYINQNNDQYLKYRNLLLLGGFVMVLMGVIGGYRILKVKHMKRDEHDD
>NZ_CP046037.1|WP_025016099.1|982223_982508_+|hypothetical-protein
MIKSEKNQYLEGYQLLTRLENGLDTIAKRHGVSFSQYLILKQIVENDCNEPSLLAKAFAISRPAMSRKLTVLFRNGKIKKLYNLKDEDQRITSL
>NZ_CP046037.1|WP_154255232.1|982739_984659_+|hypothetical-protein
MNREKGFRKVLLFGLALYVVGFGLGQDVTHSYATEASSDATLTSQLSSDSESTSSQSSSETLASETPKIAPETKGESTNPVKVMPSLAKTQTPVTQKVARAATTYKIQDLIDQGGVKTTVTWDIYSQSEDDISQGYTGTYYPKVIKFSVLPNNVLQPGDTISFSVLRYTGKLSGQGPVTMASVSLRELGQYDGKSLVLGSEYVPDKAVDASSDLPKSSGGVATLTNETTPDYTAAYAGSTINGTKSSVTVIPATHFNGFQVTNAAVGSDKKGTLTLSGYTKDQTYFQSALDGTPNLKGVPTANYVRIYRIDKESAQNINKVSFDLKTYMPALMPDGQHMAAKAGTTGPMLFIKAPAAVPINNSGSVAADATDDEIIAKTSPQTYGVLHNSDGSMTLYLNYGNLTRPYELPVDTITKGVMNNSWDGTQEGLDYALNRLSNNNYSALATSTYFTMNISFNDPSIENTVQATYKDTLNNTETINQPSSPPSASTDGQTTIKVHYADQNGKYIKPIETHYGWPDTDKLQITTQDLTIPGYTLDKSNLPKGADPDTGALTLSYPKEAGKVDDILYRFIQNKQKIDVTYVDDTTGKQLATDTMSGIVDENSKYNTQTKLAAYEKQGYQLVSDETNGATLLFSDQD
>NZ_CP046037.1|WP_094365873.1|984668_985658_+|hypothetical-protein
MHLKHAIKAAPDESKQVKRTIHYRYQSNKQAAPDVVDKITFTRHDQIDQVTNQSIGFTKWVSTEGTTTFAKQTSPVIKGYTADQLTVPAVENITQDSADITATVTYTGQAQKATVTYQRSDNQAVIQADQLTGVSGQISVYRTDATLAALADKGYTVADNPYPSDGLVFDDDVAVDQNVTVLLNYNPYYNRVYFKSVPSEMDFGQHTLASTTESYQPTVNQALSIQDERALGSKWTLKAALVQPFTGDTQKAPLEGDLTYQRADQLPTMITAQSTIIATTTTTSHDPVDISGQWQNQLGPQLVVPVGGALIDQYAAQVEWTLEDGVANE
>NZ_CP046037.1|WP_025016096.1|985789_986092_+|LPXTG-cell-wall-anchor-domain-containing-protein
MRWLKNKSKFVVLMLIIGSGLIVVNPTHTSANAQTATKSVARVGFYETGQPHKQAPIQTETKQQARLPQTGTSSVGLSTIVGIVLLIGSLGLFKQRRGNF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

13477 : 25534

Enterococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094365751.1\|13477_14850_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.6e-46	39.0
WP_035147736.1\|14933_15632_-	LysM peptidoglycan-binding domain-containing protein	A0A288TY55	Enterococcus_phage	1.7e-17	46.4
WP_011374858.1\|16300_16552_-	hypothetical protein	NA	NA	NA	NA
WP_035147729.1\|16779_17154_-	hypothetical protein	E3W8I0	Leuconostoc_phage	6.9e-05	32.7
WP_035147731.1\|17146_18451_-	Y-family DNA polymerase	Q6DMX4	Streptococcus_phage	1.3e-85	39.7
WP_052039308.1\|18450_18696_-	hypothetical protein	NA	NA	NA	NA
WP_085391464.1\|18715_19090_-	hypothetical protein	NA	NA	NA	NA
WP_035147736.1\|19116_19815_-	LysM peptidoglycan-binding domain-containing protein	A0A288TY55	Enterococcus_phage	1.7e-17	46.4
WP_016265285.1\|20057_22100_-	potassium transporter	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	3.0e-70	35.7
WP_035146208.1\|22563_23043_+	nucleoside 2-deoxyribosyltransferase	A0A1D3SPR3	Enterococcus_phage	3.8e-16	37.2
WP_094365753.1\|23094_24468_-	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	6.6e-45	30.2
WP_016265287.1\|24814_25534_-	aquaporin family protein	M1HCP3	Acanthocystis_turfacea_Chlorella_virus	2.9e-28	34.1

DBSCAN-SWA_2

51018 : 105169

Bacillus_phage(11.76%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094365768.1\|51018_52390_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.7e-46	39.4
WP_056948755.1\|52472_53339_-	glucose transporter GlcU	NA	NA	NA	NA
WP_056948756.1\|53627_54236_-	VanZ family protein	NA	NA	NA	NA
WP_056948758.1\|54448_55507_+	glycosyltransferase	NA	NA	NA	NA
WP_094365769.1\|55610_57788_+	LTA synthase family protein	W6LM83	Streptococcus_phage	2.2e-167	49.1
WP_016265316.1\|57837_58299_-	hypothetical protein	NA	NA	NA	NA
WP_016265317.1\|58292_59045_-	hypothetical protein	NA	NA	NA	NA
WP_094365771.1\|59390_60320_+\|transposase	IS30-like element ISLpl1 family transposase	H7BW47	unidentified_phage	3.0e-25	34.4
WP_025016356.1\|61776_63012_+	cytosine deaminase	NA	NA	NA	NA
WP_025016355.1\|63062_64499_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.7e-30	33.6
WP_016265321.1\|64498_65239_-	response regulator transcription factor	NA	NA	NA	NA
WP_011374914.1\|65524_65752_+	hypothetical protein	NA	NA	NA	NA
WP_025016354.1\|65886_66651_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_035146153.1\|66787_68179_+	amino acid permease	NA	NA	NA	NA
WP_011373852.1\|69187_70108_-\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
WP_094365772.1\|70732_71884_-	molecular chaperone DnaJ	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	1.4e-19	29.8
WP_016265325.1\|72003_73845_-	molecular chaperone DnaK	A0A2P1EIW2	Megavirus	1.1e-135	47.5
WP_016265326.1\|73873_74467_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_025016350.1\|74482_75541_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_094365774.1\|75721_76369_-	CatB-related O-acetyltransferase	M1HS53	Paramecium_bursaria_Chlorella_virus	3.6e-09	30.6
WP_035146146.1\|77003_78143_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_016265330.1\|78142_79096_-	riboflavin biosynthesis protein RibF	A0A1V0SJE1	Klosneuvirus	5.3e-09	36.4
WP_025016347.1\|79114_80032_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_094365898.1\|80167_80908_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_025016345.1\|81098_81617_-	hypothetical protein	NA	NA	NA	NA
WP_061827042.1\|81609_82929_-	glycosyltransferase	NA	NA	NA	NA
WP_011374944.1\|83175_83532_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_016265335.1\|83554_86368_-	translation initiation factor IF-2	E3T4N3	Cafeteria_roenbergensis_virus	2.3e-20	24.2
WP_011374946.1\|86385_86691_-	hypothetical protein	NA	NA	NA	NA
WP_011374947.1\|86687_86990_-	YlxR family protein	NA	NA	NA	NA
WP_011374948.1\|87001_88219_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_016265337.1\|88237_88711_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_094365775.1\|88851_89862_-	lactate dehydrogenase	M1HMI7	Paramecium_bursaria_Chlorella_virus	2.9e-37	31.7
WP_094365776.1\|89877_90918_-	malate permease	NA	NA	NA	NA
WP_154255153.1\|91122_91473_+	DUF2200 family protein	NA	NA	NA	NA
WP_094365778.1\|91548_91929_-	hypothetical protein	NA	NA	NA	NA
WP_094365779.1\|91953_92925_-	restriction endonuclease	NA	NA	NA	NA
WP_094365780.1\|93191_93551_+	hypothetical protein	NA	NA	NA	NA
WP_094365782.1\|93638_94568_+\|transposase	IS30-like element ISLpl1 family transposase	H7BW47	unidentified_phage	1.5e-24	34.1
WP_094365783.1\|94533_95337_-	DUF2130 domain-containing protein	NA	NA	NA	NA
WP_154255155.1\|95396_97271_-	helicase	I3VYY6	Thermoanaerobacterium_phage	1.0e-16	23.4
WP_094365785.1\|97257_98529_-	hypothetical protein	NA	NA	NA	NA
WP_094365786.1\|98518_101440_-	type III restriction-modification system endonuclease	Q71TG1	Escherichia_phage	1.2e-80	29.3
WP_094365787.1\|101439_103563_-	site-specific DNA-methyltransferase	Q1MVP0	Enterobacteria_phage	2.7e-69	30.2
WP_094365899.1\|103646_103904_-	plasmid replication protein	NA	NA	NA	NA
WP_154255156.1\|104021_104864_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.3e-152	97.5
WP_094365789.1\|104917_105169_-\|transposase	transposase	Q6J1X3	Lactobacillus_phage	7.8e-37	94.0

DBSCAN-SWA_3

125765 : 133874

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025016406.1\|125765_127511_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.2e-46	27.7
WP_011374970.1\|127652_127883_-	YneF family protein	NA	NA	NA	NA
WP_011374971.1\|127963_128206_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_011374972.1\|128340_128955_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	1.1e-15	58.2
WP_011374973.1\|129088_129607_-	adenine phosphoribosyltransferase	A0A2K9L2N8	Tupanvirus	5.6e-13	32.2
WP_025016402.1\|129630_131943_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.8e-77	30.9
WP_061827025.1\|132087_133080_+	UDP-glucose 4-epimerase GalE	A0A1V0SG19	Hokovirus	1.8e-47	36.6
WP_011374976.1\|133165_133531_+	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_011374977.1\|133547_133874_+	heavy metal-binding domain-containing protein	M4STD1	Rhodobacter_phage	5.4e-06	34.6

DBSCAN-SWA_4

1340356 : 1349990

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094365655.1\|1340356_1343209_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.9e-305	54.9
WP_016264747.1\|1343330_1343867_+	hypothetical protein	NA	NA	NA	NA
WP_011374234.1\|1343992_1344877_+	RNase adapter RapZ	A0A1P8D5W0	Corynebacterium_phage	8.4e-09	31.0
WP_016264749.1\|1344873_1345908_+	YvcK family protein	A1IMD5	Streptococcus_phage	9.0e-95	54.8
WP_094365657.1\|1345910_1346855_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	3.8e-52	39.0
WP_035146456.1\|1346946_1347402_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_035146459.1\|1347516_1348041_-	DsbA family protein	NA	NA	NA	NA
WP_025016311.1\|1348265_1348850_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.5e-51	53.4
WP_082267622.1\|1349393_1349990_-	glycoside hydrolase family 73 protein	A0A0A7RUS8	Clostridium_phage	9.0e-23	44.0

DBSCAN-SWA_5

1455743 : 1464037

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035146568.1\|1455743_1457039_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.8e-15	30.6
WP_011374364.1\|1457151_1457877_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	4.1e-38	40.4
WP_016264839.1\|1457869_1458130_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_035146570.1\|1458126_1458813_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_035146572.1\|1458802_1461028_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.0e-151	41.1
WP_035146574.1\|1461003_1462437_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.9e-51	33.9
WP_094365686.1\|1462442_1463471_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-64	44.3
WP_035146576.1\|1463467_1464037_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.4e-25	36.0

DBSCAN-SWA_6

1798331 : 1805727

Staphylococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025015768.1\|1798331_1799177_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	7.7e-20	44.2
WP_035145821.1\|1799373_1799874_-	dihydrofolate reductase	G3MBI7	Bacillus_virus	3.5e-28	38.7
WP_016265161.1\|1799884_1800835_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.6e-122	64.3
WP_035145823.1\|1800981_1802871_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.3e-48	29.1
WP_011374705.1\|1802983_1803445_-	hypothetical protein	NA	NA	NA	NA
WP_035145825.1\|1803513_1804707_-\|tRNA	CCA tRNA nucleotidyltransferase	G3MAR3	Bacillus_virus	7.3e-32	36.1
WP_016265164.1\|1804854_1805727_+	YitT family protein	M1Q1P6	Streptococcus_phage	4.8e-57	41.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046038

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046037

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection