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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040429 Stenotrophomonas maltophilia strain U5 chromosome, complete genome 13 crisprs DEDDh,csa3,WYL,cas3,DinG,PD-DExK 0 3 3 0

Results visualization

1. NZ_CP040429
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040429_1 41506-41606 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040429_2 113894-113997 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040429_3 393331-393412 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040429_4 393499-393633 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040429_5 544122-544244 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040429_6 550610-550750 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040429_7 1042632-1042739 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040429_8 1758489-1758560 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040429_9 2127669-2127848 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040429_10 2148960-2149072 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040429_11 3345478-3345616 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040429_12 3698191-3698301 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040429_13 3872002-3872113 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP040429_3 3.1|393358|27|NZ_CP040429|CRISPRCasFinder 393358-393384 27 NZ_AP017656 Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence 919-945 4 0.852
NZ_CP040429_3 3.1|393358|27|NZ_CP040429|CRISPRCasFinder 393358-393384 27 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 505799-505825 4 0.852
NZ_CP040429_4 4.1|393526|27|NZ_CP040429|CRISPRCasFinder 393526-393552 27 NZ_CP054032 Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence 1093999-1094025 4 0.852
NZ_CP040429_4 4.2|393580|27|NZ_CP040429|CRISPRCasFinder 393580-393606 27 CP000663 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence 123001-123027 4 0.852
NZ_CP040429_4 4.2|393580|27|NZ_CP040429|CRISPRCasFinder 393580-393606 27 NZ_CP031752 Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence 69169-69195 4 0.852
NZ_CP040429_3 3.1|393358|27|NZ_CP040429|CRISPRCasFinder 393358-393384 27 NZ_LN832562 Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence 277143-277169 5 0.815
NZ_CP040429_3 3.1|393358|27|NZ_CP040429|CRISPRCasFinder 393358-393384 27 NZ_CP016905 Ralstonia solanacearum strain KACC 10709 plasmid unnamed1 2035104-2035130 5 0.815
NZ_CP040429_3 3.1|393358|27|NZ_CP040429|CRISPRCasFinder 393358-393384 27 NZ_CP022791 Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence 967152-967178 5 0.815
NZ_CP040429_3 3.1|393358|27|NZ_CP040429|CRISPRCasFinder 393358-393384 27 NZ_CP021802 Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence 580397-580423 5 0.815
NZ_CP040429_4 4.1|393526|27|NZ_CP040429|CRISPRCasFinder 393526-393552 27 NZ_CP045288 Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence 112643-112669 5 0.815
NZ_CP040429_4 4.1|393526|27|NZ_CP040429|CRISPRCasFinder 393526-393552 27 NZ_AP014708 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_4p, complete sequence 12969-12995 5 0.815
NZ_CP040429_4 4.1|393526|27|NZ_CP040429|CRISPRCasFinder 393526-393552 27 CP041260 Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence 107086-107112 5 0.815
NZ_CP040429_4 4.2|393580|27|NZ_CP040429|CRISPRCasFinder 393580-393606 27 HQ632858 Tetraselmis viridis virus SI1 genomic sequence 9225-9251 5 0.815
NZ_CP040429_4 4.2|393580|27|NZ_CP040429|CRISPRCasFinder 393580-393606 27 NC_020840 Tetraselmis viridis virus S20 genomic sequence 21207-21233 5 0.815
NZ_CP040429_4 4.2|393580|27|NZ_CP040429|CRISPRCasFinder 393580-393606 27 NZ_CP032695 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence 376369-376395 5 0.815
NZ_CP040429_3 3.1|393358|27|NZ_CP040429|CRISPRCasFinder 393358-393384 27 NZ_CP017076 Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence 978197-978223 6 0.778
NZ_CP040429_3 3.1|393358|27|NZ_CP040429|CRISPRCasFinder 393358-393384 27 NC_012811 Methylorubrum extorquens AM1 megaplasmid, complete sequence 111284-111310 6 0.778
NZ_CP040429_3 3.1|393358|27|NZ_CP040429|CRISPRCasFinder 393358-393384 27 NC_012811 Methylorubrum extorquens AM1 megaplasmid, complete sequence 123999-124025 6 0.778
NZ_CP040429_3 3.1|393358|27|NZ_CP040429|CRISPRCasFinder 393358-393384 27 NZ_LR594669 Variovorax sp. SRS16 plasmid 4 39411-39437 6 0.778
NZ_CP040429_3 3.1|393358|27|NZ_CP040429|CRISPRCasFinder 393358-393384 27 NZ_CP007130 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence 768370-768396 6 0.778
NZ_CP040429_4 4.2|393580|27|NZ_CP040429|CRISPRCasFinder 393580-393606 27 NC_022001 Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence 39149-39175 6 0.778
NZ_CP040429_4 4.2|393580|27|NZ_CP040429|CRISPRCasFinder 393580-393606 27 NC_010182 Bacillus mycoides KBAB4 plasmid pBWB403, complete sequence 31999-32025 6 0.778
NZ_CP040429_3 3.1|393358|27|NZ_CP040429|CRISPRCasFinder 393358-393384 27 MN585195 Pseudomonas phage AUS531phi, complete genome 8552-8578 7 0.741

1. spacer 3.1|393358|27|NZ_CP040429|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 4, identity: 0.852

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gtccacgcggctgccgaccagccggat	Protospacer
*. ****************** * ***

2. spacer 3.1|393358|27|NZ_CP040429|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 4, identity: 0.852

gcgca-cgcggctgccgaccaggccgat	CRISPR spacer
-cgcgtcgctgctgccgaccaggccgaa	Protospacer
 ***. *** ***************** 

3. spacer 4.1|393526|27|NZ_CP040429|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 4, identity: 0.852

cgtgcgcgcacgatcggcgaccttgac	CRISPR spacer
cgtgcgcgcacgaacggcgaacttctc	Protospacer
************* ****** ***  *

4. spacer 4.2|393580|27|NZ_CP040429|CRISPRCasFinder matches to CP000663 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence) position: , mismatch: 4, identity: 0.852

ggtttccacgccttcgccgacacggat	CRISPR spacer
gggttccacgcctttgccgacacggtc	Protospacer
** ***********.********** .

5. spacer 4.2|393580|27|NZ_CP040429|CRISPRCasFinder matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 4, identity: 0.852

ggtttccacgccttcgccgacacggat	CRISPR spacer
gggttccacgcctttgccgacacggtc	Protospacer
** ***********.********** .

6. spacer 3.1|393358|27|NZ_CP040429|CRISPRCasFinder matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 5, identity: 0.815

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gatggcgcggccgccgaccaggccgat	Protospacer
*   .******.***************

7. spacer 3.1|393358|27|NZ_CP040429|CRISPRCasFinder matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 5, identity: 0.815

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
ctgcacgcggccgccgaacaggccgag	Protospacer
 .*********.***** ******** 

8. spacer 3.1|393358|27|NZ_CP040429|CRISPRCasFinder matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
ctgcacgcggccgccgaacaggccgag	Protospacer
 .*********.***** ******** 

9. spacer 3.1|393358|27|NZ_CP040429|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 5, identity: 0.815

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gcgcacgaggctgccgaccagcaggtt	Protospacer
******* *************   * *

10. spacer 4.1|393526|27|NZ_CP040429|CRISPRCasFinder matches to NZ_CP045288 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence) position: , mismatch: 5, identity: 0.815

cgtgcgcgcacgatcggcgaccttgac	CRISPR spacer
cgtgagcgcacgatcgccgacctcctc	Protospacer
**** *********** ******.  *

11. spacer 4.1|393526|27|NZ_CP040429|CRISPRCasFinder matches to NZ_AP014708 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_4p, complete sequence) position: , mismatch: 5, identity: 0.815

cgtgcgcgcacgatcggcgaccttgac	CRISPR spacer
ctggcgcgctcgatcggcgaccttcag	Protospacer
*  ****** ************** * 

12. spacer 4.1|393526|27|NZ_CP040429|CRISPRCasFinder matches to CP041260 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence) position: , mismatch: 5, identity: 0.815

cgtgcgcgcacgatcggcgaccttgac	CRISPR spacer
cgtgagcgcacgatcgccgacctcctc	Protospacer
**** *********** ******.  *

13. spacer 4.2|393580|27|NZ_CP040429|CRISPRCasFinder matches to HQ632858 (Tetraselmis viridis virus SI1 genomic sequence) position: , mismatch: 5, identity: 0.815

ggtttccacgccttcgccgacacggat	CRISPR spacer
ggtttccacgccatcgccaacacccag	Protospacer
************ *****.****  * 

14. spacer 4.2|393580|27|NZ_CP040429|CRISPRCasFinder matches to NC_020840 (Tetraselmis viridis virus S20 genomic sequence) position: , mismatch: 5, identity: 0.815

ggtttccacgccttcgccgacacggat	CRISPR spacer
ggtttccacgccatcgccaacacccag	Protospacer
************ *****.****  * 

15. spacer 4.2|393580|27|NZ_CP040429|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 5, identity: 0.815

ggtttccacgccttcgccgacacggat	CRISPR spacer
tttttccgcgccttcgccgacacctat	Protospacer
  *****.***************  **

16. spacer 3.1|393358|27|NZ_CP040429|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gcgcaggcggctgccgacccggcgctc	Protospacer
***** ************* ***   .

17. spacer 3.1|393358|27|NZ_CP040429|CRISPRCasFinder matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
cggcacgccgctgccgaccacgccgcg	Protospacer
  ****** *********** ****  

18. spacer 3.1|393358|27|NZ_CP040429|CRISPRCasFinder matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
cggcacgccgctgccgaccacgccgcg	Protospacer
  ****** *********** ****  

19. spacer 3.1|393358|27|NZ_CP040429|CRISPRCasFinder matches to NZ_LR594669 (Variovorax sp. SRS16 plasmid 4) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
cagcacgaggctgccgaccagggcgcg	Protospacer
  ***** ************** **  

20. spacer 3.1|393358|27|NZ_CP040429|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gcgcacgcggccgacgaccaggctccc	Protospacer
***********.* *********.  .

21. spacer 4.2|393580|27|NZ_CP040429|CRISPRCasFinder matches to NC_022001 (Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence) position: , mismatch: 6, identity: 0.778

ggtttccacgccttcgccgacacggat	CRISPR spacer
ggtttccccgccttcgccgacgaagca	Protospacer
******* *************. .*  

22. spacer 4.2|393580|27|NZ_CP040429|CRISPRCasFinder matches to NC_010182 (Bacillus mycoides KBAB4 plasmid pBWB403, complete sequence) position: , mismatch: 6, identity: 0.778

ggtttccacgccttcgccgacacggat	CRISPR spacer
aagttccacaccttcgccgacaccgac	Protospacer
.. ******.************* **.

23. spacer 3.1|393358|27|NZ_CP040429|CRISPRCasFinder matches to MN585195 (Pseudomonas phage AUS531phi, complete genome) position: , mismatch: 7, identity: 0.741

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
ctcgtcgcggttgccgaccaggccgaa	Protospacer
 .   *****.*************** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 279577 : 297214 19 Siphoviridae_environmental_samples(33.33%) tail,head NA
DBSCAN-SWA_2 622625 : 631603 7 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_3 1645080 : 1705758 65 uncultured_Caudovirales_phage(15.38%) protease,tail,portal,terminase,capsid,head,integrase,tRNA attL 1674636:1674651|attR 1708695:1708710
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage