CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	15 crisprs	csa3,WYL,DEDDh,cas3,Cas9_archaeal,DinG,PD-DExK	1	4	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040430_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_1

534370-534471

Orphan

Consensus_repeat	Method
GGTAGGTGCCGACCGTTGGTCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040430_1

>merge|NZ_CP040430|1|534370-534471|CRISPRCasFinder
GGTAGGTGCCGACCGTTGGTCGGCAGACCCCAATGCCCCGGTGGGTGCCAACCTTGGTTGGCACTCTTTACTGCCCTGGTGGGTGCCGACCGTTGGTCGGCA

>NZ_CP040430|1|1|534370-534471|CRISPRCasFinder
GGTAGGTGCCGACCGTTGGTCGGCA	GACCCCAATGCCCCGGTGGGTGCCAACCTTGGTTGGCACTCTTTACTGCCCT
GGTGGGTGCCGACCGTTGGTCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_088430787.1\|544543_545122_+\|phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|366010
NZ_CP040430.1\|WP_088430791.1\|540607_541399_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP040430.1\|WP_088430793.1\|539681_540611_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP040430.1\|WP_005407923.1\|529099_531088_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236842
NZ_CP040430.1\|WP_024957100.1\|531131_531422_+\|DUF3247-family-protein	unknown	unknown	gnl\|CDD\|371627
NZ_CP040430.1\|WP_088428693.1\|534482_535691_-\|beta-ketoacyl-ACP-synthase-I	unknown	unknown	gnl\|CDD\|181184
NZ_CP040430.1\|WP_088430789.1\|542220_544062_-\|TonB-dependent-vitamin-B12-receptor	unknown	unknown	gnl\|CDD\|273802
NZ_CP040430.1\|WP_005407919.1\|525030_525510_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP040430.1\|WP_043033923.1\|528291_528855_-\|DUF3016-domain-containing-protein	unknown	unknown	gnl\|CDD\|378666
NZ_CP040430.1\|WP_005412127.1\|525659_526964_+\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NZ_CP040430.1\|WP_088430795.1\|538934_539573_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|225462
NZ_CP040430.1\|WP_088428694.1\|536396_537491_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP040430.1\|WP_005407927.1\|532985_533687_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP040430.1\|WP_005412128.1\|526942_528010_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP040430.1\|WP_049395664.1\|531924_532989_+\|methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_CP040430.1\|WP_005412134.1\|535690_536206_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	unknown	unknown	gnl\|CDD\|179953
NZ_CP040430.1\|WP_005407925.1\|531504_531768_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_088430797.1\|537884_538796_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293825
NZ_CP040430.1\|WP_005407936.1\|541463_542120_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NZ_CP040430.1\|WP_005412132.1\|533683_534367_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_088430787.1\|544543_545122_+\|phosphoglycerate-mutase	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	3.00925e-33
NZ_CP040430.1\|WP_088430791.1\|540607_541399_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	3.38119e-17
NZ_CP040430.1\|WP_088430793.1\|539681_540611_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.11413e-83
NZ_CP040430.1\|WP_005407923.1\|529099_531088_+\|PAS-domain-S-box-protein	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	3.87629e-63
NZ_CP040430.1\|WP_024957100.1\|531131_531422_+\|DUF3247-family-protein	gnl\|CDD\|371627	pfam11607, DUF3247, Protein of unknown function (DUF3247). This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed at the N-terminal and internal regions.	9.01894e-24
NZ_CP040430.1\|WP_088428693.1\|534482_535691_-\|beta-ketoacyl-ACP-synthase-I	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
NZ_CP040430.1\|WP_088430789.1\|542220_544062_-\|TonB-dependent-vitamin-B12-receptor	gnl\|CDD\|273802	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor. This model represents the TonB-dependent outer membrane receptor found in gamma proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). [Transport and binding proteins, Other, Transport and binding proteins, Porins].	0
NZ_CP040430.1\|WP_005407919.1\|525030_525510_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	2.38136e-70
NZ_CP040430.1\|WP_043033923.1\|528291_528855_-\|DUF3016-domain-containing-protein	gnl\|CDD\|378666	pfam11454, DUF3016, Protein of unknown function (DUF3016). This is a bacterial family of uncharacterized proteins.	5.21528e-65
NZ_CP040430.1\|WP_005412127.1\|525659_526964_+\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NZ_CP040430.1\|WP_088430795.1\|538934_539573_-\|NAD(P)H-binding-protein	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	1.64932e-67
NZ_CP040430.1\|WP_088428694.1\|536396_537491_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP040430.1\|WP_005407927.1\|532985_533687_+\|pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	4.64966e-75
NZ_CP040430.1\|WP_005412128.1\|526942_528010_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP040430.1\|WP_049395664.1\|531924_532989_+\|methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	1.6327e-66
NZ_CP040430.1\|WP_005412134.1\|535690_536206_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	1.4515e-119
NZ_CP040430.1\|WP_088430797.1\|537884_538796_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293825	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	3.45717e-99
NZ_CP040430.1\|WP_005407936.1\|541463_542120_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	1.19309e-84
NZ_CP040430.1\|WP_005412132.1\|533683_534367_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	3.06987e-58

>NZ_CP040430.1|WP_005412132.1|533683_534367_+|HAD-family-phosphatase
MTTIAALPFLPDAVIFDMDGLMIDSERVSLACWSQAADEFGLGLDEAVFLRMVGLGDRDTHALLRAQGIEDSVIEAMAARCHDLYEARTQTGLPLRPGILELLQLLKAHAVPRAVATTTRQPRANRKLAAAGLLPYFDAVITSGDVARPKPAPDIYLLAAQRLGQAPERCLALEDSPAGTRAALAAGMTVIQVPDLVHPDEELRALGHRIVGSLVDAHALLLPLLPR
>NZ_CP040430.1|WP_005407927.1|532985_533687_+|pseudouridine-synthase
MKLVKLIANLGYGSRKQVQWMFREGRVTDADGEVLYADDQVPHEAIRVDGEPLDPPVGLSIALHKPAGYTCSTKDTGRLIYDLLPPRFRDRDPVLSTVGRLDRETSGLLLLTDDGGLLHRIISPKSKLPKVYEVELSDDLRGDEVALFASGTLMLESEKTPLLPAELEVLDARRARLVLHEGRYHQVRRMFAATGNHVQALHRSRVGGLDLQGLDEGQWRQLTSTDLDTLFAP
>NZ_CP040430.1|WP_049395664.1|531924_532989_+|methyltransferase
MASSDDAPLQTLFLPFSQGALRWPEGPVAFLRARDGWPLREVAGNREVHCEQSFAPFAQPLQQAAGWTVSGQLDDVAGKGRYPLVLVLPPRQREEARALFARALALVADGGRIVACQSNNEGARSGEGDLKQLTGLGGSLTKNHCRVYWTAPMQGQHDADLAKRWSALDAVRPIVGGRFLSRPGVFAWDRIDPASALLAEHLPADLAGRAADLGAGYGYLSRELLERCPKITALDLYEAEQRALALAELNLAPPPRPLPLRFLWQDVTAGIEPGYDVIISNPPFHTPSRADRPDIGQRFIAVAAQALRPGGRLYVVANRHLPYEYTLNESFGAVRVIAERDGFKLVEAVKGKGK
>NZ_CP040430.1|WP_005407925.1|531504_531768_-|hypothetical-protein
MRALFVGGVVDNSEMDLEGSHPPVHYPEDTGGGHSRYRLHQVGHGADGSVAYAVYGAPDLADDEVARVAEERAYARRFEATPTLFEH
>NZ_CP040430.1|WP_024957100.1|531131_531422_+|DUF3247-family-protein
MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRLPPRV
>NZ_CP040430.1|WP_005407923.1|529099_531088_+|PAS-domain-S-box-protein
MMVPAPEPDLHHGVLERINAGFCVIQVLFEGDRAVDYRFIEVNDAFERHTGLKDARGQRMSALEPNHEEDWFRIYGEVARSGRPAQFEMEARALGRSFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLRTLLGEAIGAQELVAEGKALDVHLQLPEQPSLVLGDATRLQQVFWNLLSNAIKFTPAEGRIDVQLQADGTHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVAAASEGHGHGATFTVRLPQHLPDAERRPLREVISGPILEPVIVEPYPLRGMHVLAVEDQPEVLEYLRRMLEEQGASVSAASSAGEALALLADTGHLQYHVMLTDIGMPGMDGYGLVRTLREDMGVDAATLPAVAVTALARADDRRRALASGFQEHVAKPYSVAQLVAAVRKVQVPRADSALH
>NZ_CP040430.1|WP_043033923.1|528291_528855_-|DUF3016-domain-containing-protein
MKRALVIALLAGALVVSGANAAARNVTGTDAPRALQANGPVSVKWEDPATFTEIRQSTNRFEAERGDWVQQLARYLQTTAAKPLQPGQTLDVTLVDIKRAGDYEPWHGPRARDIRVMRDIYPPRITLQYTLKDADGRIVSEGDARLSDSGYLQGSGLLTNSDPLRYEKRLIDDWVKRQLASQATAAR
>NZ_CP040430.1|WP_005412128.1|526942_528010_+|alanine-racemase
MRPARALIDLGALRSNYRLARELGGGKALAIIKADAYGHGAVRCAQALEGEADGFGVATIEEALELRQAGIRAPILLLEGIFEPSDMALVAEHDFWFAVGSPWQLEAVAAFDSPRPLTVWLKLDSGMHRLGLDVDSFRAAHARLSALPQVERIVLMTHLARADELDSERTHEQAATFARAIDGLHGETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDDTTLTERLRPVMTMQSKVIAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYPQFAPNGTPVLIDGQPGALIGRVSMDMLTVDLTAHPQAAVGSVVELWGSAPTLAELAPRCGVSAYQLPCAVKRVAKVYV
>NZ_CP040430.1|WP_005412127.1|525659_526964_+|D-amino-acid-dehydrogenase
MRVLVLGSGVIGTTSAWYLRQAGFEVTVIDRQPGPALETSFANAGQLSFGYTSPWAAPGVPKKAIGWLFEKHAPLAIKPGMDLAQYRWLWQMLRNCTHERYAINKARMVRMSEYSRDCLNELRAQIGIEFEGRDLGTTQLFRTQQQLDASAQDIEILAQYGVPYEVLDRAGIIQAEPALAHVDGLVGALRLPRDQTGDCQLFTRRLAQMCVDAGVEFRFDQDITGLEFDGDRITGVRIDGKLETADRFVVALGSYSPALVAPLGMRLPVYPLKGYSLTLPITDPAMAPTSTILDESYKVAVTRFDDRIRVGGMAEVAGFDLSLSQRRRETLELVVSDLYPKGGDLSRAQFWTGLRPATPDGTPVIGATPFRNLYLNTGHGTLGWTMACGSGRYLADLMSARQPQISTEGLDIFRYGQYGHAPQQENRTCVLPAR
>NZ_CP040430.1|WP_005407919.1|525030_525510_-|winged-helix-turn-helix-transcriptional-regulator
MATRTRELDKIDRKILRILQAEGRISFTELGERVGLSTTPCTERVRRLEREGVITGYHAHLDPAAVKASLLVFVEISLAYKSGDIFEEFRRAALKLPNVLECHLVSGDFDYLLKARISEMASYRKLLGSTLLTLPHVRESKSYIVMEEVKETLSLPIPD
>NZ_CP040430.1|WP_088428693.1|534482_535691_-|beta-ketoacyl-ACP-synthase-I
MRRVVITGMGITSCLGNDLDTVSAALREGRSGITALADHAEAGLRSQVGGRVDLDLEALIDRKQKRFMSDAAAFAYLAMRDAIADAGLSAEQVSSLRTGLIAGSGGGSSEWQIGAVDLLRERGVRKVGPYMVPRTMCSTVSACLATAYQIKGVSYSLSAACATSAHCIGAAADMIRHGAQDIMFAGGGEDLHWSMSVMFDAMGALSTSFNETPASASRPYDKDRDGFVIAGGGGMLVLEDYDHAVARGAHIHAELIGYGVTSDGADMVAPSGEGAVRCMKMALQGVDRPLDYLNTHGTSTPLGDVTELNAIREVFGDAVPPLSSTKALSGHSLGAASVHEAIYCLLMMRDGFVAGSANIGELDPKVESFPILRESREQQLDTVMSNSFGFGGTNAALVFGRV
>NZ_CP040430.1|WP_005412134.1|535690_536206_-|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA
MTRLHAFNREQLLASARGELFGTAAGRLPNDPMLMFDRITDIREDGGPHGKGMVRAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLTGFFLTWLGAPGKGRALGCGEVKFTGQVLPEARLVRYEIDISRVINRKLVMAQSDARMYVDDREIYSARDLRVGLFTETGSF
>NZ_CP040430.1|WP_088428694.1|536396_537491_+|DNA-polymerase-IV
MTRLRKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTEPKSGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRVPGVGKVMEGKLAARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFAEDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLKLKTAQFRILTRSFTPERPPESMEELRDIALSLRARVDLPAETRYRLVGVGLGGFREKEPVVQGELFEHDMINPTDT
>NZ_CP040430.1|WP_088430797.1|537884_538796_-|MBL-fold-metallo-hydrolase
MRTAALLLPLALAASFTSAPLLAAPATAAPAAATKSQLHLQTFHPGPQAMFSVSSVLIEGRRDAILIDAQFGASDARKLVELIRASGKQLTTIYISHGDPDYYFGLATLQDAFPQARIVATAQTVAHIQQSQAGKLAYWGPKMGADVPARIVVPQVLDGDALQLEGQRLPLIGLDGPTPDRTVLWVPSLRAIVGGIPVVAGEHVWMADTQTPKSHADWLQTLQRLQALKPKVVVPGHYAPGAALDASALVFTADYIRAFDAETAKAKDSAALVKAMQARYPKLAGVASLELSAKVAKGEMQWP
>NZ_CP040430.1|WP_088430795.1|538934_539573_-|NAD(P)H-binding-protein
MKIALVGSTGNIGRQIARHALANGHELTVIVRSAQDLPVELAGAHPVIASLDDQDALVAAIAGHDVLASAYGPRPGDDIGRVGEVAAQLAAAARKAGVPRLVVVGGAGSLEVAPGVQLVDTPNFPEAYKPYALAHREAFNRLQAVDDLDWTFFSPAAEIGPGEERGQYRVQPKAFLADASGHSRISYADYGAAFVAELEAHQYPKQIITAAY
>NZ_CP040430.1|WP_088430793.1|539681_540611_+|LysR-family-transcriptional-regulator
MDRLTAMTVFVEVAERGSLTAAAEVLDMSRAMVSRYLAEVEGWLGARLLHRTTRRVSLTGPGEAALARFRQMLAIGEELQGELASDDPEPHGTLRVTASVSFGQSHLARAVAGFVTRHPAARIELLLVDRMVNLVEERVDLAVRIARQIDPSLIARRLATCRSVLCATPSYLHARGTPTAPEHLAGHNCLTHHYVGKSLWQLHRDGRSLSVAVGGNISANEASLLLEAVRAGAGIAMLPTYQVAPLLRSGELIELLPEFSLDELGIHAVYASRRQQPAIMRRFLDFLAECFASPAFQDLDWRPPGKENT
>NZ_CP040430.1|WP_088430791.1|540607_541399_+|class-I-SAM-dependent-methyltransferase
MNHGQALIDHNRAAWDRQASEVREWSRPVESSTIAAARDGRWQVHLTPRTLPLDWLGDVRGRRILCLASGGGQQAPVLAAAGAEVTVFDLSDGQLEQDRQVAARDGLQLRTVQGDMRDLHAFANDSFDVVFHPISNLYVPDVRPVWTECRRVLARDGMLMASFYNPVLFVGARDPQLDAQGLIRPQYAIPYSDLEDLPPAEREAKLARGDALTFGHSLTELIGGQLDAGFVIDRFMEDWQPQPRFLIDRYLPTFLATRARRIG
>NZ_CP040430.1|WP_005407936.1|541463_542120_+|phosphoglycolate-phosphatase
MPYPYPLVVFDLDGTLVDSAADIAEALNRTLEDIGVARVPEATVLGWIGDGVRRLVEQAVQAAGREVDLAEVMPVFMVHYRECLLRSPRLFDGVGEALAQLRARSVPLAICTNKPEALVPPLLQHLGIGDAFALVLGGDSLPQRKPSGEPLRHIAAHFGLPVESCLMVGDSLTDYRAAEEAGMPIALVRYGYPRGLDLATAHAVAVIDDLRELPGLRG
>NZ_CP040430.1|WP_088430789.1|542220_544062_-|TonB-dependent-vitamin-B12-receptor
MKLQSRMLSLAVLAALPALAQAANDTTALDQILVTATRTPIALQDSIAPAQVIDRAQIESSQATSLQELLRGRAGINLANAGGLGKQSSLFLRGTNSGHTVVLVDGVRINSADLGLAMYQDLPLAQIERVEIVRGPQSSLYGADAIGGVIQIFTRRNQGDFAPHFQLGGGSNGLREASGGIGGGTERGWFGADIAYQHSDGIDACRGSATLFAGCFADEPDRDGYRNLSKSLRGGYTFNEQWNVEGSALRADGRNHYDGYYNYSETRQQVLAGKVRYTPSERLAFTANVGRSDNESDNFGDFGARGSAQTHRDSASLQGDFGVAEGQLLSAGVDWSEDNLDGSSAGYLVDSRRNTGVFVQYQGRFGRHQLQASARNDDNQQFGNHATGSVGWAMELGHGLRLNASYGTAFKAPTFSDLYDPWSGVPTLKPEKSKSANLGVSQQGQGWHWGLDVYETRIDDLITYDAATSKMQQVEKARIRGAELTGGVLLAGFDINAQLSYTDPRNRTGGSTQFDNWLPRRAQQTARLDIDRRFGDFRAGLTVQGAGKRYDDAANTVKVGGYGTLDLRAEYALTPSWSLLARAANVFDRRYETVAWFNQPGREYQLSVRYQPK
>NZ_CP040430.1|WP_088430787.1|544543_545122_+|phosphoglycerate-mutase
MILDLVRHAGNGRDEFLDGRSDPPQLARLPQELVEAYAGQCWERVISSPRLRSLHTAMALATPRGLDVESDEEWEELDFGDWDGRSLFDLPEDALAAFHADPHAFPPPNGESWGHFERRISRALDRLLDDDDPVPTLVVSHGGPLRMVLSQVCGLPMSLCWALRIDHGTRLRVWLERGEIGLVGELLELQQP

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Crispr_ID: NZ_CP040430_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_2

574402-574616

Orphan

Consensus_repeat	Method
CGACGCCAAGCTCGCCCGCCAGGAAGCCGAGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040430_2

>merge|NZ_CP040430|2|574402-574616|PILER-CR
CGATGCCGCGCGTGCCCGCCAGGAAGCCGAACAGCTGCGCATGCAGGCACAGATGCAGGCCGAGGAGGCTGAACGCCTGCGCCAGGCCGCCGAGGCCGAGACCCTGGCCCGCCAGGACGCCGAGAACGCCCTGACCAGCGTCGCCGGCAAGCAGCAGCAGCGCCTCAGCGCCGCCCAGCAGAACGCCGCCAAGCTCGCCCGCGAGGAAGCCGAGC

>NZ_CP040430|2|1|574402-574616|PILER-CR
CGATGCCGCGCGTGCCCGCCAGGAAGCCGAAC	AGCTGCGCATGCAGGCACAGATGCAGGCCGAGGAGGCTGAACGCCTGCGCCAGGCCGCCGAGGCCGAGACC
CTGGCCCGCCAGGACGCCGAGAACGCCCTGAC	CAGCGTCGCCGGCAAGCAGCAGCAGCGCCTCAGCGCCGCCCAGCAGAACGCCGCCAAG
CTCGCCCGCGAGGAAGCCGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_088430777.1\|562462_565057_+\|peptidase-M14	unknown	unknown	gnl\|CDD\|349457
NZ_CP040430.1\|WP_032965987.1\|579897_580683_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP040430.1\|WP_088431873.1\|586559_587597_+\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NZ_CP040430.1\|WP_088431874.1\|571038_572322_-\|putative-DNA-modification/repair-radical-SAM-protein	unknown	unknown	gnl\|CDD\|188431
NZ_CP040430.1\|WP_005407956.1\|565605_567018_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236722
NZ_CP040430.1\|WP_004141526.1\|572452_573580_-\|PilT/PilU-family-type-4a-pilus-ATPase	unknown	unknown	gnl\|CDD\|227341
NZ_CP040430.1\|WP_005407957.1\|567876_568866_+\|fumarylacetoacetate-hydrolase	unknown	unknown	gnl\|CDD\|223257
NZ_CP040430.1\|WP_005407969.1\|580694_581945_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057
NZ_CP040430.1\|WP_005407967.1\|578497_579892_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP040430.1\|WP_005407961.1\|573701_574067_+\|DUF4398-domain-containing-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_005407973.1\|587580_588486_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187570
NZ_CP040430.1\|WP_005407970.1\|581941_583414_+\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|377448
NZ_CP040430.1\|WP_005407964.1\|575272_575509_+\|YdcH-family-protein	unknown	unknown	gnl\|CDD\|377305
NZ_CP040430.1\|WP_049450545.1\|583414_586294_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340838
NZ_CP040430.1\|WP_005407965.1\|575809_577180_+\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223110
NZ_CP040430.1\|WP_111108841.1\|568880_569549_+\|maleylacetoacetate-isomerase	unknown	unknown	gnl\|CDD\|273527
NZ_CP040430.1\|WP_154267676.1\|559748_562388_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|366183
NZ_CP040430.1\|WP_005407966.1\|577303_578479_+\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|366438
NZ_CP040430.1\|WP_088431875.1\|569597_571058_-\|UdgX-family-uracil-DNA-binding-protein	unknown	unknown	gnl\|CDD\|274850
NZ_CP040430.1\|WP_049444904.1\|559193_559556_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|376501

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_088430777.1\|562462_565057_+\|peptidase-M14	gnl\|CDD\|349457	cd06238, M14-like, Peptidase M14-like domain; uncharacterized subgroup. Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavage. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.	1.67102e-96
NZ_CP040430.1\|WP_032965987.1\|579897_580683_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.90256e-49
NZ_CP040430.1\|WP_088431873.1\|586559_587597_+\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP040430.1\|WP_088431874.1\|571038_572322_-\|putative-DNA-modification/repair-radical-SAM-protein	gnl\|CDD\|188431	TIGR03916, hypothetical_protein, putative DNA modification/repair radical SAM protein. This uncharacterized protein of about 400 amino acids in length contains a radical SAM protein in the N-terminal half. Members are present in about twenty percent of prokaryotic genomes, always paired with a member of the conserved hypothetical protein TIGR03915. Roughly forty percent of the members of that family exist as fusions with a uracil-DNA glycosylase-like region, TIGR03914. In DNA, uracil results from deamidation of cytosine, forming U/G mismatches that lead to mutation, and so uracil-DNA glycosylase is a DNA repair enzyme. This indirect connection, and the recurring role or radical SAM protein in modification chemistries, suggest that this protein may act in DNA modification, repair, or both. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP040430.1\|WP_005407956.1\|565605_567018_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	1.27013e-173
NZ_CP040430.1\|WP_004141526.1\|572452_573580_-\|PilT/PilU-family-type-4a-pilus-ATPase	gnl\|CDD\|227341	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].	2.5955e-166
NZ_CP040430.1\|WP_005407957.1\|567876_568866_+\|fumarylacetoacetate-hydrolase	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	6.52067e-37
NZ_CP040430.1\|WP_005407969.1\|580694_581945_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	8.15656e-105
NZ_CP040430.1\|WP_005407964.1\|575272_575509_+\|YdcH-family-protein	gnl\|CDD\|377305	pfam04325, DUF465, Protein of unknown function (DUF465). Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.	6.81491e-09
NZ_CP040430.1\|WP_005407967.1\|578497_579892_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	4.20459e-19
NZ_CP040430.1\|WP_005407970.1\|581941_583414_+\|FkbM-family-methyltransferase	gnl\|CDD\|377448	pfam05050, Methyltransf_21, Methyltransferase FkbM domain. This family has members from bacteria to human, and appears to be a methyltransferase.	3.90875e-21
NZ_CP040430.1\|WP_005407973.1\|587580_588486_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187570	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs. GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.65959e-68
NZ_CP040430.1\|WP_005407965.1\|575809_577180_+\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	1.19921e-132
NZ_CP040430.1\|WP_049450545.1\|583414_586294_+\|glycosyltransferase	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	8.87606e-67
NZ_CP040430.1\|WP_111108841.1\|568880_569549_+\|maleylacetoacetate-isomerase	gnl\|CDD\|273527	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism. [Energy metabolism, Amino acids and amines].	3.54798e-111
NZ_CP040430.1\|WP_154267676.1\|559748_562388_+\|TonB-dependent-receptor	gnl\|CDD\|366183	pfam00593, TonB_dep_Rec, TonB dependent receptor. This model now only covers the conserved part of the barrel structure.	1.16077e-36
NZ_CP040430.1\|WP_005407966.1\|577303_578479_+\|cystathionine-gamma-synthase	gnl\|CDD\|366438	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	0
NZ_CP040430.1\|WP_088431875.1\|569597_571058_-\|UdgX-family-uracil-DNA-binding-protein	gnl\|CDD\|274850	TIGR03914, SPO1_DNA_polymerase-related_protein, uracil-DNA glycosylase family domain. This model represents a clade within the uracil-DNA glycosylase superfamily. Among characterized proteins, it most closely resembles the Thermus thermophilus uracil-DNA glycosylase TTUDGA, which acts uracil (deamidated cytosine) in both single-stranded DNA and U/G pairs of double-stranded DNA. This domain may occur either as a stand-alone protein or as the C-terminal domain of a fusion with another domain that always pairs with a particular radical-SAM family protein.	1.487e-99
NZ_CP040430.1\|WP_049444904.1\|559193_559556_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|376501	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.	2.12313e-49

>NZ_CP040430.1|WP_005407961.1|573701_574067_+|DUF4398-domain-containing-protein
MRHSLYVMAFAFALSAPAWAQDGAMELAQARQAVDKATQADADQYAPDLIGLARQGLEQAQRAAGDRRERKNAPAMALRAAADADLARVRSEEATVTAQLQLRRNEVNQLQRQLSTGEDRR
>NZ_CP040430.1|WP_004141526.1|572452_573580_-|PilT/PilU-family-type-4a-pilus-ATPase
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALPDAGRFRVNVFKQRGEVGMVIRAIRSRIPSIEELNLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTTTGHILTIEDPIEYLHKHKMSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERILNFFPESAHKNVLMNLALNLRAVISQRLVKNKEGRRLPATEVLLNTPMIRDLLRRGQVHEIKAAMEASLEEGMESFDQCLFRLAKAGTIEQEEALRAADSRDGLALKFRLSEGSSGEHDPYADFSAGAPSITHGF
>NZ_CP040430.1|WP_088431874.1|571038_572322_-|putative-DNA-modification/repair-radical-SAM-protein
METIRKLAILADAAKYDASCASSGSGKRDSRASGGIGSTEGMGICHSYTPDGRCVSLLKILLTNFCVYDCAYCVNRVSSNVPRARFSVDEVVTLTLDFYKRNYIEGLFLSSGIIRNADYTMEQMVEVARQLREEHRYAGYIHLKTIPEASPELLASAGRYADRLSINVELPTEAGLSALAPEKTVHSIRGAMGELRWRIEEAKEARKAPAAVAPTASRSTRPRPPRFAPAGQSTQMIVGADGANDQQILASADSLYGSYRMRRVYYSAFSPIPDASRQLPLQPPPLQREHRLYQADWLLRFYGYGVDEITDTTQGGMLDLDIDPKMAWAIRHPERFPVDLNRAPKEMLLRVPGLGVRNAERVLMARRHGRLRVADIARLKAPMRKLLPFVLLADHHPRKALDDPAALRAQLAPPPRQGSLFDAPPAA
>NZ_CP040430.1|WP_088431875.1|569597_571058_-|UdgX-family-uracil-DNA-binding-protein
MHRRQPDAPRWSQRVDPPWSLQAWRDGARDALLRGVRPEQLDWLEGGEASLLDAPPVQQAPVAAQASVPGVPREFLELAATCLCHGEPQRLSLLYRLLWRITHGERTVLTNPADADVLRAMTLAQAVRRDTHKMKAFVRFRELPGQPDAFIAWFEPQHHIVDRVAPFFARRFTGMRWAILTPSRSVAWDGQALAFGPGARREDAPAEDAREALWQTYYASIFNPARLNTRMMMQEMPARYWRHLPEAQLLPRLVRDAGERVQEMHDRPAQAPQRRIPMRGDAAAARPDTASLQTLRQQASACRQCPLWETATQTVFGQGPADARVMVIGEQPGDTEDLRGQPFAGPAGQLLDRALAELGIDRATLYLTNAVKHFHHERRGKVRLHKRPESRHIQACRPWLMGEIARVRPQLIVCLGATAAASVFGRDFNLSRDRGRWHTLEEGTRGYATVHPAWVLRQGDGARRERAYALFRDDLAQLLQKGDGGD
>NZ_CP040430.1|WP_111108841.1|568880_569549_+|maleylacetoacetate-isomerase
MEIPVDDGIVLYTYWRSSAAYRVRIGLELKGLAWEARPVHLVRDGGEQHLDAYRALNPQQQVPTLLHEGHVLTQSLAILEYLDERFPQVPLLPADAAGRARVRALAQLVACDIHPINNLRVMQYLERSLQLPADARMQWTLHWMAEGFAAMEAMLANSRDTGTFCHGDRPGLADLCLLPQLYNAHRFGLDLAPYPTLRRIEAACQALDAFDRARPENQPDAA
>NZ_CP040430.1|WP_005407957.1|567876_568866_+|fumarylacetoacetate-hydrolase
MKLGSLKEGGRDGTLIVVSRDLRHGVRATGIAATLQQALEDWSHIAPRLNALYESLNAGDADGVFDLDPQALAAPMPRAYEFVDGSAYLPHVERVRRARGAEVPESFYTDPLMYQATSAGFYGPRDAVKVVSEEYGIDLEAEIVVITDDVPMAATPEQAAGHIQLVGLVNDVSLRNLIPGELAKGFGFLQSKPRSALSPVFVTPDELGVAWQDSKVHLPLLTHINGKWFGAPEAGVDMQFNFAQLVAHAAKTRPLGAGTIVGSGTIANEDTSKGASCFAEQRVVETLRDGKPSTPFMSFGDVVRIEMLDAAGNSIFGAIEQRIEQAAKP
>NZ_CP040430.1|WP_005407956.1|565605_567018_-|DEAD/DEAH-box-helicase
MSFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQHLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLHLLAQDSREQTLVFARTKHGSDKLASFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKLLRAIVRLLGRDMDIRDVPGFELQTPIRWGNSAPGKAEHDTGERAPRKSHARRPHGDAPRHAHAGPKKAGGGRREGGGNGQQRAGAGQGQRRGGGGNGGGRGRGQGGGGGRAG
>NZ_CP040430.1|WP_088430777.1|562462_565057_+|peptidase-M14
MSLHRRAVLPLLLAAATALSSPQPAQAQSAYFFPQVTDAAAFDAAVPTPEQFLGYPIGSRYTRHDQLVAYFQELAKRSDKISVREIGRSYEGRPLLIATVTAAGNHARLEQIRQQHATLADPAQPRSAAGDSPVVVWLGYSVHGNETSSAEAAMLTAYYLVANHSAETQQWLQQAVVLFDPAQNPDGRDRAANWHNAWASDPASADPADKEHVEPFPQGRTNHYFTDLNRDWLALTQQDSRPKVEVFHQWYPNVQIDFHEMGKDSTYYFEPSPKSMHSPLIPAASYEFNKTLAKYHAQALDALGSLYYTGENFDNFSPVYGSTYPDFHGAVGVTVEQASSRGRVQESVNGLLTFPFTIRNQVATGLGTVRGAVSERSGLFDLQKQFFQSALKQAAQQPVKSFVFGDAHDPALTRRLLELLLLHRIEVRALDRAVTVDGQRFDAGSAYVVPVQQAQFRLVHSIFAETPPIKGDVFYGSTSYAIAPAYGVAFAGSRSRIEGGARVTALPAEQGAVLGGEAGFAYAIDWRDYNAGRALAALQGKGVNARAAFQPFTTATAQGDISFAAGSLVIPVAGQSLQGAALLETVTSAAREAGVQVHALSSGRSREGIDLGSDGVKALRKPAVALVMGEGVAATEIGSAWFLLDQQLQLPASKLDPQQLGKVPLDRYTTIVLSGGTYTGVDATAVAALKRWVQAGGSLVTYGSASKWAIEQKLADGEKLGKEEDAADASRRAFGDQRDIAAIERVSGNILSADVDTSHPLAFGVPRRQLAINKENTVTLQPSANPFSTVVRIDTPPRVNGYLSERNRTRVAGSAWLLVSAQGQGNVVLFADDPAHRKYWHGTDRLLINAIFFGNLVNPSKARG
>NZ_CP040430.1|WP_154267676.1|559748_562388_+|TonB-dependent-receptor
MPKHTLLVAALAVALAAPLSAAAETSADASGEASTLAAVRVTGSNIKRTDTEASNPVQVIGRQQLEQTGKATVADVLRSISANTGNASNETTNNGWASGSAGIGLRGLSQKNTLVLLNGRRLANYGFPAGGLSDTFVDLNALPLVAVERIEVLKDGASAVYGSDAVAGVVNIITRQNFEGAEIGGSFGGADQGGLHEQNLKFVGGLGDLDTDGYNILFSLQGYNRERLDQDERNLTRSGIYTDKPGGRWNGWSAKGARYLVNGVSVPMLDANGNCPTGTTRVASAPIDGLAGDTCGFNQAPFTTLIPSTKRYQAYANGTFRLNDNVEAFGEVLYSQIKSAAWFGSSPFFTLESGRFALNANSGLAEQVSSLLPANNPYNPYGRAIPIEYTFFDLGGTIKTNRSTAYRGVFGLRGTTASWDWEVAAFGARSSERESVSGGFANRWALADALATGSYNLLNQAATPQSVRDSINIATLRPAESKLQGIDAKISGSLGHTWAGEIGFAAGAEWRREKLDSNNPWQIDAGLQVRPAIAEVHGKRQVSAAYAEVNVPLASTLELSAAARADHYDDFGDALSPKIGLRWQPLDVLLVRASASKGFRAPSLSENSNSTSIAYGSVVDPRDPDVPGSRQNPTFFTVGNNELKPERTRSVNFGVVLSPWANTNLSVDYYRIQLDNLVGTNNTQTLVNDNVAGAVQRDERGKLQAVYNRYQNLSELKTSGIDVELRQRIPTAALGDFTVSSAYTHVRDYRRPTVVGGPLVDYAGSNLGATLPKDKATTTLDWKYGDFNAAVTWYYTSSYRQEASTAAKAVQQRVGSYSQYDLYLAYTGIDKLTVYAKVQNLADKTPPYDASFPGIRAPYDFSQYDLRGRYFTLGFDYRF
>NZ_CP040430.1|WP_049444904.1|559193_559556_-|6-carboxytetrahydropterin-synthase-QueD
MEIFKVFMLEAAHRLPNVPPGHKCARLHGHSFRVELKVEGEPGAQTGWIMDFGDVKAAFQPIYDRLDHHYLNDIPGLENPTSENLAVWIWNELKPSLPALSEITVHETCTSGCRYRGPAA
>NZ_CP040430.1|WP_005407964.1|575272_575509_+|YdcH-family-protein
MFEDQPQSEIDARRARDPEFRALHDQHRKLNKKCMDAELGVLPIDDVTLGRMKREKLLAKQRLLRMYETPLPTTSPTL
>NZ_CP040430.1|WP_005407965.1|575809_577180_+|pyridoxal-phosphate-dependent-enzyme
MPIHSSVLELIGQTPIVKAQRLDTGVCELYLKLESANPGGSIKDRIGLSMIEAAEQRGDLKPGATLVEGTAGNTGLGLALVAQQKGYKLILVVPDKMSREKIFNLKAMGAEVRLTRSDVAKGHPEYYQDLAKTIAEQTPGAYFINQFGNPDNPAAHEFGTGPEILEQMGGDLDAIVFGCGSSGTMTGLSRAFAKLSPKTELVLADPVGSILAEYINDGVLNDKSGSWLVEGIGEDFLPSISDFSRVKKAYAISDAESFHTARELLGKEGILGGSSTGTLLAAALKYCKEQTTPKKVLVLVCDTGNKYLSKMYNDYWMLDNGFLERPQHGDLRDLILRPYGQRDTVVIGPNDLLTTAYQRMKLYDVSQLPVMDGDQLVGIVDESDVLLHVYGDEARFRDTVATAMVSKLDRLDVKSPIEALLPVFDRGQVAIVMDGNAFLGLITRIDLLNYLRRRVQ
>NZ_CP040430.1|WP_005407966.1|577303_578479_+|cystathionine-gamma-synthase
MSNATSQDRALALATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVASLEGGTRGFAFASGMAASSTVIELLDAGSHVVAMDDIYGGSFRLFERVRRRTAGLDFSFVDLTDLAAFEASITPKTKMVWIETPTNPMLKIVDIAAVAAIAKRHGLIVVVDNTFASPMLQRPLELGAHLVLHSATKYLNGHSDMVGGMVVVGDNAELAEQMAFLQNSVGGVQGPFDSFLALRGLKTLPLRMKAHCANALALAQWLDKHPAVEKVIYPGLPSHPQHELAGRQMAGYGGIVSIVLKGGFEAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGVEELGDLQVDLERALGG
>NZ_CP040430.1|WP_005407967.1|578497_579892_+|glycosyltransferase-family-4-protein
MTRPDSISATASVRALTWLRRQPWLRVAFHLLPIGLRERALRLFSRRLQARTRFARTSAWEKQLQPAGEVVARAAGSGADQPGVNVLGYIHGQFGLAEAARSYARALIEQGVPVALRDIDLGLPNARGDHALDAYLDDTMPHAVSIIFVNPDYLAQALASIPLARGQGRYLIACWFWELERLPDSWLPALELVDEVMVATGFVENAVAHATRKPVTRIPMPLGVLNDSGLQRVDFGLPEDAFVFLTSFDFSSRMERKNPEAVIHAFRAAFPVQRRDVRLLIKSSNGHRFPHLLKHLLTLTDGDERIIVRDEVIAREHLNALQRCCDAYVSLHRAEGFGLGLAECMAMGKPVIATGWSGNMEFMDADSAGLVGFTLVPVGTGEYPGGAGQRWADADVEQAADFMRHFADDRAFAAEVGARGKRMVDRLLSGRHVAASVAARVEQIKQQAALGAGLHDEMNVRGVQ
>NZ_CP040430.1|WP_032965987.1|579897_580683_+|ABC-transporter-permease
MMRSIWAYRYFILSSIKNELRVRFVRSKLGALWMIIHPLMQVLIFATILSEVLSAKLPGIDNKYGYALYLMAGTLCWSMFSETVGRCVTLFVDSGNLMKKMAFPRICLPFITGGTMLVNNLLLLLAIFAVFAALGHYPGVQALWLPVLMVITLLFAMSIGLLLGVLNVFMRDIGQVVPVVLQALFWLTPIVYNIRILPEHVQNIFKLNPLYPLVSSYQNVLLYEQPPVWGDLVWLTMATVVLALISLVMFRRASPEMVDAL
>NZ_CP040430.1|WP_005407969.1|580694_581945_+|ABC-transporter-ATP-binding-protein
MLSGVGKAYRNWGSEWKRVASWFGFPTRPLEEHWVLQDINLHVGPGETIGLIGQNGAGKSTLLKIVTGTVRPTRGHATRTGRIAAILELGMGFNPDLTGRQNVIHAAGLMGHELEQIQKAMPEIEAFAEIGDYFDQPVRTYSSGMQMRVAFSVATAFKPDILIVDEALSVGDSYFQHKSFDRIRKFRDQGTSILFVSHGMSEVKTLCDRVILLDAGRILKDGAPDEVVDYYNALVAKKENQSLSIEQHREDDGWLQTRSGTREVTCDQLELLDADGNPIKVATVGQKVELRLTAGVHKAVDRLVLGYMLRDKFGHVVWGTNTWHTRQIEENLAAGDTAVFSMTFTCTLGPGSYSVSPALVSGDNHLENNYEWVDNLLVFDVVNVDRDVFIGTNWLDASFVIDRTPGVDRGPDGGVA
>NZ_CP040430.1|WP_005407970.1|581941_583414_+|FkbM-family-methyltransferase
MSEGIVSYAQNFEDVILWRVLAHVGAGNYVDVGAQSAFEDSVSRAFHEHGWKGVHVEPMPFYAEQLRNERPGDLIVQAMVGVEEGVGELFAMSGTGLSTSRGDLAEGYQRDGWAVSRQVVPVLTLDTVLDKVDGEIHWLKIDVEGAELQVLQGWHGSRRPWVLVVESTLPMSQEQNHETWDGLVVEKGYTFAYFDGLNRFYVSDAHPELAAAFGPGPNVFDRFMLSGTATSTFAAKLNQKLELAAQEKQRVVEEKQGVEAELAVSREERAHARERLAEAEKASLVQRLEAGEREIDLHMRISTTLSRVNELQDELTEERRRAMDAVAAAIADVAHERDEALARAAHLHRDLMVIHQSTSWVVTAPLRAIARGARWSLKAPVALLRWVKAKTMPKVRHVLYAVLRRAARQPLVKRLARRAFVAMPGLERRVRALHGAANGRPVPGEPQAVASGIASSDLVRLLAAPLPPDVSAQARQSLLRVRHAAMGAKS
>NZ_CP040430.1|WP_049450545.1|583414_586294_+|glycosyltransferase
MRIVIDLQGAQTASRYRGIGRYSLSLAVAMARNAGEHEIHVLLNGRFADTVEPIRQAFGSALPEGRIHVWMPARSTGQMGEDGIDERIRESVLNALEPDFVHIASLFEGFDEAAITGVHSGFCRFRTAVTLFDLIPLIHQKRYLENPVMAQWYHRKVAHMRRADLLLGISGSASQEAIDYLGFEADKVVNISSAIDDGFKRLAPDALDEAGLRRKYGLSRAFVMYTGGIDHRKNIEGLIRSYAMLPQEVRSAHQLAVVCSVRDDSRDQLNRLARDCGLRDGELVLTGFVSDEDLVALYNLARLFVFPSWHEGFGLPALEAMQCGAPVIGSATSSLPEVIGLEEALFDPHDDQAIKAKLLQGLVDDAFRERLLAHAPVQAKRFSWDASAVRALAAMASAATQPPDRARPRLAYVSPLPPERSGIADYSAELIPELARHYEIDVIVDQSQIDDHAVCGSARVRDLAWFQVHGAGYDRVLYHFGNSAFHVHMVDMLERVPGVVVLHDFFLSGMLAYREHAMGRAGTWAEALYRSHGYAPMPALAAHKHEQLVMGYPCNYGVLASAVGMLVHSAVSTRMAQQYYPGGDAVRWREVPLMRVAAQAGDRARLRQALGLPKDAFVVCSFGFMAPTKLNSRLVDAWLASSMAEDENCYLVFVGEPDSNDYGSALQKKILASSAAQRIRITGFASRDDFRAYLQCADAAVQLRTMSRGETSAAVLDALNHGLATVVNANGSMADLPDHTVLKLEDAFEDAALQHALESLYHDVERRQELALAGQRHVHQIHQPRRCADAYADAIEDFYAASGQGQQALLTELGGYLAHGGAAVDEAGLGQALAWNHPSRQSGRQALIDIDPGAGLLESPGGRAALQSLLLNPPAGWRIEPVSRKGGDSYRYARGAALELLGCPASLLRDEPVDVRAGDVLLGEGIEGSMAFQQLLWRGARFVPWSEHAGLFAPQGPGG
>NZ_CP040430.1|WP_088431873.1|586559_587597_+|GDP-mannose-4,6-dehydratase
MMKKAIITGITGQDGAYLTELLLAKGYEVYGTYRRTSSVNFWRLDELGVTNHPNLHLVEYDLTDLGTSLAMVQKIQPDEIYNLAAQSFVGVSFEQPTTTAQITGVGALNLLEAIRLVNPKIRFYQASTSEMFGKVQAVPQVEDTPFYPRSPYGVAKLYAHWITVNYRESYDIFGSSGILFNHESPLRGREFVTRKITDSVAKIKLGQLDVLELGNLDAKRDWGFAKEYVEGMWRMLQADQPDTFVLATNRTETVRDFVRMAFKGAGIDVEFKGKDIDEVAIDTASGNTVMRINPKFHRPAEVDLLIGNPEKAGRILGWKPQTTLEQLCQMMVEADLKRNERGFSF
>NZ_CP040430.1|WP_005407973.1|587580_588486_+|NAD-dependent-epimerase/dehydratase-family-protein
MVSPSEIIGKRVLITGASGFTGRYVAEQLSAAGCQVLTLGTRAGVGEGASVDLLDRDALRESLQRLQPELVVHLAAISFVAHGDADEIYRVNISGTRNLLEALASLPVPPQHVLIASSANVYGNVGGVLVESSPFSPQNDYAVSKMAMEAMASLWRDRLPFTLVRPFNYTGVGQSDRFLIPKIVSHFQRRAPVIELGNTDVSRDFYDVRLVAQIYARLLSLPASGAVYNVCSGVEWSLAQVIDALRDLSGHDIEVRVNPAFVRDNEVKSLRGSNAKLDHSLGGLPAFDFSSTLSWMYGSTL

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Crispr_ID: NZ_CP040430_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_3

1854297-1854443

Orphan

Consensus_repeat	Method
TGCCGGCCAGCGGCCGGCACTACC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040430_3

>merge|NZ_CP040430|3|1854297-1854443|CRISPRCasFinder
TGCCGGCCGCTGGCCGGCAACCTCATGAACGATTGAAGCATCACCTGGATGCCGGCCAGCGGCCGGCACTACCGGAGCGGATGGGTTGCCGGCCAGCGGCCGGCACTACCAGAGCGGACGGGTTGCCGGCCTGCGGCCGGCACTACC

>NZ_CP040430|3|2|1854297-1854443|CRISPRCasFinder
TGCCGGCCGCTGGCCGGCAACCTC	ATGAACGATTGAAGCATCACCTGGA
TGCCGGCCAGCGGCCGGCACTACC	GGAGCGGATGGGTTGCCGGCCAGCGGCCGGCACTACCAGAGCGGACGGGT
TGCCGGCCTGCGGCCGGCACTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_005409053.1\|1845124_1845640_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225854
NZ_CP040430.1\|WP_005409058.1\|1850090_1850906_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP040430.1\|WP_005412971.1\|1863093_1864101_-\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NZ_CP040430.1\|WP_005409054.1\|1845825_1846149_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|378771
NZ_CP040430.1\|WP_005409057.1\|1849570_1850056_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NZ_CP040430.1\|WP_005409068.1\|1859535_1860195_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NZ_CP040430.1\|WP_060380643.1\|1855020_1856247_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP040430.1\|WP_005409069.1\|1860399_1862316_-\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|181628
NZ_CP040430.1\|WP_005409072.1\|1864097_1865534_-\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
NZ_CP040430.1\|WP_005409059.1\|1850902_1851742_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_CP040430.1\|WP_005409062.1\|1852770_1854285_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NZ_CP040430.1\|WP_005409063.1\|1854460_1855024_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226933
NZ_CP040430.1\|WP_005409060.1\|1851808_1852306_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_154267827.1\|1856361_1857627_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_CP040430.1\|WP_032965757.1\|1848187_1849567_+\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|236939
NZ_CP040430.1\|WP_005409070.1\|1862374_1863097_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|238694
NZ_CP040430.1\|WP_005409055.1\|1846341_1847766_+\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP040430.1\|WP_005409066.1\|1857607_1858357_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP040430.1\|WP_005409061.1\|1852393_1852774_+\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|180090
NZ_CP040430.1\|WP_005409067.1\|1858557_1859205_+\|response-regulator	unknown	unknown	gnl\|CDD\|236538

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_005409053.1\|1845124_1845640_+\|hypothetical-protein	gnl\|CDD\|225854	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane].	0.00178994
NZ_CP040430.1\|WP_005409058.1\|1850090_1850906_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	1.9505e-146
NZ_CP040430.1\|WP_005412971.1\|1863093_1864101_-\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	5.85256e-164
NZ_CP040430.1\|WP_005409054.1\|1845825_1846149_-\|ferredoxin-family-protein	gnl\|CDD\|378771	pfam11953, DUF3470, Domain of unknown function (DUF3470). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 50 amino acids in length. This domain is found associated with pfam00037. This domain has a single completely conserved residue N that may be functionally important.	7.04517e-20
NZ_CP040430.1\|WP_005409057.1\|1849570_1850056_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	1.12892e-66
NZ_CP040430.1\|WP_005409068.1\|1859535_1860195_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	3.36614e-99
NZ_CP040430.1\|WP_060380643.1\|1855020_1856247_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.34116e-18
NZ_CP040430.1\|WP_005409072.1\|1864097_1865534_-\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
NZ_CP040430.1\|WP_005409059.1\|1850902_1851742_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	1.34339e-150
NZ_CP040430.1\|WP_005409062.1\|1852770_1854285_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NZ_CP040430.1\|WP_005409063.1\|1854460_1855024_-\|response-regulator-transcription-factor	gnl\|CDD\|226933	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].	4.22903e-77
NZ_CP040430.1\|WP_005409069.1\|1860399_1862316_-\|phosphogluconate-dehydratase	gnl\|CDD\|181628	PRK09054, PRK09054, phosphogluconate dehydratase; Validated.	0
NZ_CP040430.1\|WP_154267827.1\|1856361_1857627_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP040430.1\|WP_032965757.1\|1848187_1849567_+\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|236939	PRK11623, pcnB, poly(A) polymerase I; Provisional.	3.18845e-171
NZ_CP040430.1\|WP_005409070.1\|1862374_1863097_-\|6-phosphogluconolactonase	gnl\|CDD\|238694	cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.	1.56156e-55
NZ_CP040430.1\|WP_005409055.1\|1846341_1847766_+\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.24148e-155
NZ_CP040430.1\|WP_005409066.1\|1857607_1858357_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.24648e-51
NZ_CP040430.1\|WP_005409061.1\|1852393_1852774_+\|aspartate-1-decarboxylase	gnl\|CDD\|180090	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.	9.63919e-73
NZ_CP040430.1\|WP_005409067.1\|1858557_1859205_+\|response-regulator	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	5.75562e-72

>NZ_CP040430.1|WP_005409062.1|1852770_1854285_+|glucose-6-phosphate-isomerase
MTTNNGFDSLHSHAQRLKGASIPGLLAAEPGRVQDLALRVGPLYVNFARQKYDAAALQALLALAADRDVGGAITRLFRGEQVNLTEGRAALHTALRGDVVDAPVAAEAYATARGIRQRMGVLVRALEDSGVTDVVSVGIGGSDLGPRLVADALRPVTGARLRVHFVSNVDGAAMQRTLATLDPAKTAGILISKTFGTQETLLNGQILHDWLGGSERLYAVSANPERAAKAFAIAADRVLPMWDWVGGRYSLWSAVGFPIALAIGFERFEQLLEGAAQMDAHALDAPLERNLPVLHGLTDIWNRNLLGHATHAVMTYDQRLALLPAYLQQLVMESLGKRVQRDGQPVTTDTVPVWWGGAGTDVQHSFFQALHQGTSIVPADFIGCVHNDDPYTINHQALLANLLAQTEALANGQGSDDPHRDYPGGRPSTLILLDALTPQALGALIAMYEHAVYVQSVIWNINAFDQFGVELGKQLASGLLPALQGEDVAVADPMTREILAQLKR
>NZ_CP040430.1|WP_005409061.1|1852393_1852774_+|aspartate-1-decarboxylase
MHLSLLKTKIHRATVTHSELNYEGSIAIDDNLLAATGIREFEQVHIWDVTNGARFSTYAIRAEAGSGVVSLNGGAARHVQVGDIIIIAAFASMTEQEADSFKPKLVYVDGKNQITHTNDTIPTQAA
>NZ_CP040430.1|WP_005409060.1|1851808_1852306_+|hypothetical-protein
MKTPSTDAGRLAQALILAVLAAGMLPAQLFGGLLFALEFRRTPMPALTGGGLMFGLGVCVAIAVFLPMALLLRSRWPLRRTRFVLAGSALGALAMAIHEWPGAIHGPLLQRLRYVDTFDVISYGLTVLAAGGLGLASGLTFHTVFRLSLQGGAVNATAPPPGEGA
>NZ_CP040430.1|WP_005409059.1|1850902_1851742_+|pantoate--beta-alanine-ligase
MIQTFNELGALRGQIAQWKREGLRVALVPTMGNLHGGHHSLVTLARQYADKVVASIFVNPTQFGPNEDFSRYPRTPEADVAGLEQVGCDAVWLPSVEAMYPLGVDKTTQMHAPGVSEVLEGASRPGHFDGVCTVVARLFLQVQPDVAVFGRKDYQQLAVIRQMVAELSFPIQIVGADIVRDEDGLAKSSRNQYLSAEQRPVATTIHRTLLGMREGYVAGQARDRIEADATAALQAAGFQVDYAVLRTPELAEPTFDGGGRVALIAARLGSTRLIDNLEF
>NZ_CP040430.1|WP_005409058.1|1850090_1850906_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSTHADSKPWTVPALAEAKRNGQKLVMLTAYDAGFARTFDANGVDLILIGDSLGMVVQGHDSTLPVTVADMVYHTRAVARVLQRALLVADLPFGADATPERALDASLQLLQAGAEMVKIEGAGFKVDIIRYLVEREIPVCAHLGLTPQSVLRLGGFKIQGRGDAARQLVEDARAVAAAGASIMVLECVPTPVAAEVTAAVEVPTIGIGAGPQCDGQVLVLHDFLGLDSGHRRPKFVKDFLAEGGSVAGATRAYADAVRDGSFPDEQHAYAS
>NZ_CP040430.1|WP_005409057.1|1849570_1850056_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MMPAWIGLGANLGDAATTVGAAITALDGLPGTRVLQASRLYATPAWGNEDQPPFVNAVAAVETSLAADELLQAMLALEQRFGRVRDPAVHWGPRALDLDLLLYGAQVLDQPGLQVPHPYMHERAFVLVPLAEIAPDLAIPGHGRVRDAVMRVDACGIAPIG
>NZ_CP040430.1|WP_032965757.1|1848187_1849567_+|polynucleotide-adenylyltransferase-PcnB
MGNPETSTGSANIISSATSPFSLRVIPRDQHTISRKDISPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAVRRDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLAAKLGFQIEEGTAAPIPQLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLFPESARALKSNRTGALRRMLVEGLANTDARVANDEPVSPAFLFALLLWPAFCRAQATLLKQGVAPEEAQRRAADRVTVQQLSTIALPRRFSLPMQEIWLLQSRFSSRQRKRVFRTLTHPRFRAAFDFLSLRQVASAEHAADVEFWREAQAQSGRELESSLDAMHSEEGDDENGAPRKRRRRRRRPGASAGAAGE
>NZ_CP040430.1|WP_005409055.1|1846341_1847766_+|sugar-porter-family-MFS-transporter
MSPAKPSIAPHGGENTAFIVLISCVATLGGFLFGFDSGVINGTVDGLRQAFNSSEAALGFEVASMLLGCAIGAFLAGWLGDRLGRRGVLIVSALMFLVSALGAGAAHASWLFIAARVLGGFAVGAASVMSPAYIAEVASARYRGRLATVQQMAIICGLFAAFLSNYLLARAAGASTEPLWLGREAWRWMFWMQALPSGLFLLLLLVIPESPRFLVLKGRQQQARAVLARLYGDTAAAAKQAEIETSLAQDQHKPRFGDLRNKATGKLRPILWVGIGLAMFQQLVGINVVFYYGAVLWQAVGFSESDALLINVLSGGLSIGACLLTVLLIDRIGRKPLLWIGSVGMSVALVLMVVAFASGSLADGRLQLSDGMGRLALVAANVYVVFFNMSWGPVMWVMLGEMFPNQIRGPALAVAGAAQWTSNFAITVTFPMLLAGIGLAGAYGIYTVAAILSIVFVVRYVRETKGKELEQMEG
>NZ_CP040430.1|WP_005409054.1|1845825_1846149_-|ferredoxin-family-protein
MPFVVTENCIKCKHTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPVNAIFPEDDVPAGQEGFVALNAELAKEWPVLTVRKDPPADAGEWDGKPDKLKLLER
>NZ_CP040430.1|WP_005409053.1|1845124_1845640_+|hypothetical-protein
MRQSVSTVRVLSYALLAVAVAAGTTGCFKRGVKGDYALAPEMRPLEVPPDLNLPATTGDNKVPALVSATKPAAPAAAAPAVGNTGFTIAGGKDEAFAKVGTALEGVEGVTIASRAQLLGSYDVAYEGSNFLVRVVAVDAGAYISAVDPRGLPATAEAPVKLIAALKAKLAQ
>NZ_CP040430.1|WP_005409063.1|1854460_1855024_-|response-regulator-transcription-factor
MSASTLGLLVDDDELYLRTLQRSLARKGLETQTAQDAASALALARQHPPAFALIDLKLGSDSGLALIQPLRALRADMRILLVTGYASIATAVEAIKLGADDYLPKPATVPMILRALGEEDDGPADDGEMEVPDAMTPISRLQWEHIQQAMHETGGNVSAAARLLGMHRRSLQRKLAKRPSPERDPSR
>NZ_CP040430.1|WP_060380643.1|1855020_1856247_-|HAMP-domain-containing-histidine-kinase
MTGPDAPFLRTLCSLRWLAVGGQAATILVATWVLGLPLPQLPLWAGVAVLTLFNIYTQLRPEAADTAPLTAFGHILVDVIILTWMVGWSGGMANPFSSLFLILIALAAFALPLRWALAVALACLLGYAASGIFGQSLPDGYFRAQDLNRWGVVANFLISAAVVLAFSTRLALALRQRELELSALRERFARNEGIVALATHAASVAHELNTPLATMTLLADDVAERSEEPEVREDMETLRELLVQCRERVLALAAPASADAPGRSHSSAQQVLEQWRLVRPTIDLHRNDDAPLRLPLDPGVGHLLMVLLNNAADAGEQAGRPRVDLDLRIEGDDLIGEVRDYGHGFNARAAVLPGKLFGSSKSEGMGVGLALSHATIERLDGEMWMRPAQGAGSRVGFRLPLAPREETP
>NZ_CP040430.1|WP_154267827.1|1856361_1857627_+|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MHDAVTRPTPPSDATAWPRRQTHAVQIGGVTVGGGKPVVVQSMTNTDTSDVASSVKQVAELWRAGSEMVRLTVNTVEAAAAIPRIVDKLAMMGIDVPLIGDFHYNGHQLLTAEPACAEALAKYRINPGNVGFGKKKDLQFAQLIEFAIRYNKPVRIGANWGSLDQALAAKLMDENNLREQPWDAGRVLREALIRSALDSAEQAVELGLPRDRIVLSAKVSGVQELIAVYRDLAQRSDFALHLGLTEAGIGSKGIVASSAALGVLLQEGIGDTIRISLTPEPGQSRTQEVIVAQELLQTTGQRAFTPLVTACPGCGRTTSEFFQELAKVVQNHVREKMPLWKIHHPGAENMTLAVMGCIVNGPGESRHANIGISLPGTGETPAAPVFVDGEKKVTLRGDNIAQEFVALIDDYVEHTYIRSAG
>NZ_CP040430.1|WP_005409066.1|1857607_1858357_+|phosphatase-PAP2-family-protein
MSEAPDKPAILAAPESASGFRHWMARNAWRLVLLFGGVLLPLAGFVALADEVHEFESFHFDAPLLWQMHGLHSPWLDRFFVLISKLGYEWFLIPADVLIIGVLLGYRRWREATFVAVSFVGSALLNMGSKQFFQRQRPSLWESIAPESTFSFPSGHAMGSMTLAVTLVLLAWNTRWRWPVLMLAPAFSLLVSVSRVYLGVHYPSDILAGWCAALVWVVGCYLVMFSRRHPWRRHGPPPAKASEAPTQGV
>NZ_CP040430.1|WP_005409067.1|1858557_1859205_+|response-regulator
MTIRVYLVDDHALVRTGMKMILSGETDIEVVGEAETGEDALREVRQLLPDVVLCDLHLPGVSGMEVTERIVRSHRNTRVVIVSVLEDGPLPKRLLEAGAAGYIGKGCDAQELLRAVRDVAAGRRYLGTSIAQNLALSTVEGNGSPFDNLSPRELEVALLLTQGLRQEDIARRLSLSAKTVNTHKARLFEKMGIHDNIALARMASQYGLVDPARPL
>NZ_CP040430.1|WP_005409068.1|1859535_1860195_-|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MGIEQHQVKAAELLRAAGILPVVTIHTLDQARAVSAALLEGGLPAIELTLRTPVAMEALAMLKRELPDVVVGAGTVLTVEQMQQSIDAGADFLVTPGTPPALADALAAAPLPVVPGAATPTELLSLYARGFRVCKLFPATAVGGLAMIKGLAGPVADLKLCPTGGITENTAAEYLEQKNVVCIGGSWMVPGNWIANGEWDKVRASAADAAKIIQRVRGH
>NZ_CP040430.1|WP_005409069.1|1860399_1862316_-|phosphogluconate-dehydratase
MSLHPQLQAITERVIRRSAASRAAYLAAIDASLREGPFRSRLSCGNLAHGFAACGGTDKSRLRGGVTPNLGIITAYNDMLSAHQPFETYPEQIREIARELGATAQVAGGVPAMCDGVTQGRGGMELSLFSRDVIAQATAIGLSHDMFDSTVYLGVCDKIVPGLLIGALAFGHLPAVFVPAGPMTPGIPNKQKAEVRERYAAGEATREELLEAESASYHGAGTCTFYGTANSNQVLLEAMGVQLPGASFVNPGTPLRDALTREATERALDITALGDDFRPLGRIIDERAIINAVIALMATGGSTNHTIHWIAVARAAGIVLTWDDFDELSQLIPLLARVYPNGEADVNRFAAAGGPAFVFGELIKAGLMHGDLVSVARGGMADYAREPQLRDGQLVYLPGLERSADDEVVRGVDNPFEHQGGLRLLRGNLGKSLIKLSAVKPQYRTIEAPAVVVDAPQVLNKLHAGGLLPQDFVAVVRYQGPRANGMPELHSLAPLLGLLQNQGRRVALVTDGRLSGASGKIPAAIHVTPEAARGGPLAKVREGDMIRLDGEAGTLEVLVDAAEWAARPLAPNTAPAAHDLGRNLFAINRRVVGPADQGAISISCGPAAADGGPWEYDAEYELGHDAAAAAAPHEAKDA
>NZ_CP040430.1|WP_005409070.1|1862374_1863097_-|6-phosphogluconolactonase
MSPTFHDDRVEFIHHGDADGWIEAVAAEMAQTLNHDINEVGRARILLSGGTTPAPVYQALAELDVHWDRVEVSLADERWLSPQDRDSNAWLVREHLLKRAEGAHFDPLVRIGKPLQECVYTANLQAQHSQPPSLVALGMGNDGHTASLFPGSKDLARALESALPYAALDATGCPGANQWPLRITLTPHGLRQCRQRLLLLRGKQKLQVLRQALDSNDAQQYPILNAINLEGARLRVHWAD
>NZ_CP040430.1|WP_005412971.1|1863093_1864101_-|glucokinase
MSANSQPVLVADIGGTNARFALADTSLDAPLLKESIREYAVAEFPSLGDAARHHLEQIGAAASRGVFAVAGRVDGDEARITNHPWVISRSRTAAMLGFDELHLINDFAAQAMAISLLQPEDVVQVGGAAWVPGKPGQPRNYAVIGPGTGLGVGGLILRHGRCYPLETEGGHVSFPPGTPEEIRILEILSEQFGRVSNERLICGPGLVNIHRAVCEMAGIDPGQLQPVDVTARALHGDPQAMRTVDVFCAVFGAIAGDLVLTQGAWDGVFLTGGLTPKMLDSLQHSGFRQRFEHKGRFSSIMARVPSLAVMHPHAGLLGAAAYAADAERDAPGVAA
>NZ_CP040430.1|WP_005409072.1|1864097_1865534_-|glucose-6-phosphate-dehydrogenase
MHDTLFLFGATGDLAQRYLFPSLLRLLGDGLLPEDFRIRALALSGHDTEAFHDILRPRLQQAMPMASQDDINGLLRRIDYRSVDLRDVDSVAAAVSDLVHRKCVSYLAIPPGLYISTCEGLAKGGALAAPARLMLEKPIGSDSESAEEIISTIGQWIDEDRVFRLDHYLGKAAVQNLIALRFGNTLLEAVWNRNYIESVHILVAESEGVDGRDAYYARSGALRDMVQSHILQLLCMVAMEPPASLEADRIRDEKVKVLRALRPLDARHAARDSIRGRYTAGTINGQPAQAYQPPEGSDVETFAGVTAHIDNWRWSGVPFHLVTGKRLPERTTRVVVTLKPVTHWLFERPQRAQAAPNRLVFQLQPQENIELGLMSSLAGPEWGALELHPLELELSVPTGLHRRIAYERLFLDAFNGNHTLFVRDDEVRAAWAWIDSVADAWKEAKLPLEPYPAGQWGPSNATEFLPQGVDAPDSEASA

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Crispr_ID: NZ_CP040430_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_4

2286958-2287065

Orphan

Consensus_repeat	Method
ATCCACGCATGCCGTGGATCTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040430_4

>merge|NZ_CP040430|4|2286958-2287065|CRISPRCasFinder
ATCCACGCATGCCGTGGATCTACCGCAACCCGCTTTGGTGGGGGCCGACCGTTTGGTCGGCACGGATGCCTGTGCCTCTCGATCATCCACGCATGGCGTGGATCTACC

>NZ_CP040430|4|3|2286958-2287065|CRISPRCasFinder
ATCCACGCATGCCGTGGATCTACC	GCAACCCGCTTTGGTGGGGGCCGACCGTTTGGTCGGCACGGATGCCTGTGCCTCTCGATC
ATCCACGCATGGCGTGGATCTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_005409591.1\|2291641_2292112_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_005409587.1\|2288018_2289209_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP040430.1\|WP_005409590.1\|2291178_2291640_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239647
NZ_CP040430.1\|WP_088428728.1\|2287704_2287920_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_005409582.1\|2280146_2281919_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP040430.1\|WP_005413275.1\|2276633_2277290_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|183625
NZ_CP040430.1\|WP_005409577.1\|2275438_2276383_-\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|381151
NZ_CP040430.1\|WP_088428726.1\|2284157_2286917_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP040430.1\|WP_032966709.1\|2296019_2296403_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_005409580.1\|2277667_2278006_+\|flagellar-protein-FlgN	unknown	unknown	unknown
NZ_CP040430.1\|WP_012480136.1\|2293655_2295941_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP040430.1\|WP_088428729.1\|2292704_2293517_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	unknown	unknown	gnl\|CDD\|226100
NZ_CP040430.1\|WP_005409576.1\|2274905_2275301_-\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|183628
NZ_CP040430.1\|WP_088428725.1\|2281923_2284026_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP040430.1\|WP_005413279.1\|2289428_2290043_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|234690
NZ_CP040430.1\|WP_005409592.1\|2292224_2292551_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP040430.1\|WP_005409579.1\|2277365_2277671_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NZ_CP040430.1\|WP_005409581.1\|2278097_2279315_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340419
NZ_CP040430.1\|WP_088429338.1\|2274494_2274902_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|183634
NZ_CP040430.1\|WP_012480134.1\|2290039_2291182_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_005409587.1\|2288018_2289209_-\|chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	7.72638e-31
NZ_CP040430.1\|WP_005409590.1\|2291178_2291640_-\|NUDIX-hydrolase	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.7154e-70
NZ_CP040430.1\|WP_005409592.1\|2292224_2292551_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	4.26539e-44
NZ_CP040430.1\|WP_005409582.1\|2280146_2281919_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	5.55568e-97
NZ_CP040430.1\|WP_005413279.1\|2289428_2290043_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|234690	PRK00218, PRK00218, lysogenization regulator HflD.	2.48163e-86
NZ_CP040430.1\|WP_005409577.1\|2275438_2276383_-\|chemotaxis-protein-CheV	gnl\|CDD\|381151	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins. This subfamily includes the REC domains of Bacillus subtilis chemotaxis protein CheV, Myxococcus xanthus gliding motility regulatory protein FrzE, and similar proteins. CheV is a hybrid protein with an N-terminal CheW-like domain and a C-terminal CheY-like REC domain. The CheV pathway is one of three systems employed by B. subtilis for sensory adaptation that contribute to chemotaxis. It is involved in the transmission of sensory signals from chemoreceptors to flagellar motors. Together with CheW, it is involved in the coupling of methyl-accepting chemoreceptors to the central two-component histidine kinase CheA. FrzE is a hybrid sensor histidine kinase/response regulator that is part of the Frz pathway that controls cell reversal frequency to support directional motility during swarming and fruiting body formation. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.16931e-37
NZ_CP040430.1\|WP_088428726.1\|2284157_2286917_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	8.86306e-106
NZ_CP040430.1\|WP_012480136.1\|2293655_2295941_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP040430.1\|WP_088428729.1\|2292704_2293517_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	gnl\|CDD\|226100	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms].	4.01788e-75
NZ_CP040430.1\|WP_005409579.1\|2277365_2277671_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	1.67856e-14
NZ_CP040430.1\|WP_005409576.1\|2274905_2275301_-\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|183628	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional.	8.61259e-79
NZ_CP040430.1\|WP_088428725.1\|2281923_2284026_-\|PAS-domain-S-box-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	5.59366e-43
NZ_CP040430.1\|WP_005413275.1\|2276633_2277290_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|183625	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA.	2.43507e-107
NZ_CP040430.1\|WP_005409581.1\|2278097_2279315_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|340419	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS. This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli AtoS, an HK of the AtoS-AtoC TCS. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have accessory domains such as HAMP or PAS sensor domains or CBS-pair domains.	1.6216e-52
NZ_CP040430.1\|WP_088429338.1\|2274494_2274902_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|183634	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional.	5.18221e-80
NZ_CP040430.1\|WP_012480134.1\|2290039_2291182_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0

>NZ_CP040430.1|WP_088428726.1|2284157_2286917_+|EAL-domain-containing-protein
MDQGIIASLLQHPLASALVIVDRTGRPLAANPAAREHGLPATVAAYAPMLEDLRLMAADGGIVACTLPGGPHGHYDGHLRAVHDGAGNLLAFTLSIPEPVPLGGGGRWELALDSAGHSLWDWDIPSDRVVRTPAVGDETATEMLARVHGEDIAQVRAALEEHLRGLSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQLEGLLQEQQLHLSEAQRIASMGSWSFDPNSGHFWWSPELRSMLALEQGAVPGQRRWLKQLHPRSRGALRAAWRRLWRDGRAANLELELTRGNEPSQHLRLWMQPLLDMDGQPKRLLGQVQNITEQHQTDALIRWRTELLNRVSALGRIGGCEIEVKTRHMQWTEECYRIHGLRKEPITLDQALALYTEDSRNAFEAALARIANGGLPEQLDLCFYRQSGLRVWVQVLIELDRRDGLPPRFVVLFRDITREREANERIELLAHYDLLTGLPNRVLLGEQTAEAIEEARDRGTSLAMLFIDLDGFKTINDSFGHATGDALLKAAATRLHQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLIASLAEPLRRGETTLKVGASVGIAMLGDAQTDFDSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRKLELEHALHGAIEREEFSLAYQPLLHAHHGEPPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLNEACRQATAWDRAGLRFDRIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESALIRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGTAEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQPQPVSMRTDASGEVMLMR
>NZ_CP040430.1|WP_088428725.1|2281923_2284026_-|PAS-domain-S-box-protein
MPAEPTGTALVPDPRMAQALSRDRRRVVLSYLVMALAWMIASDSAVQALVPDPQQAAMWQSVKGSFFALASAGLLYLLLRPLAEHVLHTHARQQASELRLRQMFEGNPGPILVYDLDTLAILDANPAACIAFGWERDELLEQTIDALWPPGQDQALQTKLEAIREAPEELCILRTQLQLRDGSLRQMELRSNAISYDGHNARLLIAIDRTAEDLAQLRRDQALARVEEAHELARIGAWELDPSTGMGRYSNQVYRLLGRRPPEARRWHRFDELLVPADPATATQTEQLLADLCSGDPVQVDVLLPLLSMDGRALMVHLRAASGVDESGRSRVLGTLQDVTEREQSRRLLREREEQFRELVRVLPDGVVILSDEHVLYTNAWAASLFGYGSHTLLGEPLSALVAAGDLARVRGQLRAGQPHLGPGHSSVVAMQRADGRSFHAGLAVGEVRYGGRDCKLLIVRDLSDSERTRSALETSNRELQAMAGRLFSLQEDERRAISRDLHDDIGQAITAIKLSAHAAQDEHDPQRRAEDLAQIVSLADTTVAKLRDISTLLRPPQLDALGLEAALSWQARVLFRSSQVELLAEIEPLPHRPDNSIEQACFRIAQESLTNVLRHARASQVHLQLRDIGKRSLHLQIRDDGEGFDPDGPRGLGLIVMRERAQSVGGHVRIESAHGEGTLIDVHLPYQAASMAAVESPEY
>NZ_CP040430.1|WP_005409582.1|2280146_2281919_-|EAL-domain-containing-protein
MWNPNQPPVSIDDAPDRLGAGNPELQAMVAEAASGGTALMLMHVDIDHFASVNENMSAEVGDQALVLVAQRLQSYLRGRGKLWRHGSDEFLIAVPRNADVPLPEDFAEEIRQQMELPLSVLPYTLFMTGKLGVSLCPEHASNASRLLDHAEDALYQAAREGGNAVRIHAVDTPPSAHSESIIARQIVDAIPNGELKLRYQPLVSARDGHVVGMEALLRWQSPTLGMLVPERFMRTAERLGIIVQIGTWVLEGALKQARLWRDQGFDDFTIAVNVSTLQLLRPNFFAEVMGLIQAAGVPAQMLTLEINESALTNNVNFVHETLANLRNEGISLSLDNFGTGDSSLSALVRYPVDKLKIDRSFIKSAPAGNREAAIARAIIAMGHQLGMTVIANGVESQAQLGFLRRNDCDVFQGYLFGEPMSADAAGMTLRRRYLRPEAFAETRPDRTLLLLDDEENVLRSLVRLFRRDGYRILAAGNVRDAFDLLAINDVQVILSDQRMSDMSGTEFLGRVKMLYPDTIRLVLSGYTDLNTVTDAINRGAIYRFLTKPWNDDELRKHIHQAFRTYEEQRRSNAGPAPAESGDGGEDRPLR
>NZ_CP040430.1|WP_005409581.1|2278097_2279315_+|two-component-sensor-histidine-kinase
MSAANALVTAPLPPQPVLQALLERLREGLLLFTEDGQVALANPAAQNLLAGGEDGALPPQRLRELLPPDALEQARQHGHWNGSLPLGEGVVIAHLYHHGPVGQGHFLALFRHIEGQEDYERELQQRHAELRQAYLRLNGTQEKLLQSEKMASIGQLAAGVAHEINNPIGYVHSNLGSLQEYLRSLFTVIEAYERALRAPDPKALIPEIDDIRDRLDIDFISRDLPQLMAESREGIERVTRIVRDLKDFSYSGRDESWKLVDLHAGLESTINIIWNELKYKVTLVREFGQLPLVECLPSELNQVYMNLLLNAGHAIAERGTITVRTGVDGDQVWVEFEDTGGGISPELRQRIFDPFFTTKPVGSGTGLGLSISYSIINKHHGRIDLDSTPGVGSRFRVVLPVKQPR
>NZ_CP040430.1|WP_005409580.1|2277667_2278006_+|flagellar-protein-FlgN
MTAAMSEPLQRLAQALDVERQALVEHDVHALIRATGAKLEALRALEGAPPVGQGEQLQELAERNRANGVLLSRRRREVNWALRQLGRTEDASAYDAKGQSHTVTARRPLAVA
>NZ_CP040430.1|WP_005409579.1|2277365_2277671_+|flagellar-biosynthesis-anti-sigma-factor-FlgM
MSQKIDGNLQVPQALRSVTTPANKPGVSTDAAARPVEAADSLRLTGEATNLQAIERELTTAPAIDAQRVAAVRESLQNGTYKINPDAIASRMLDLDQQLHG
>NZ_CP040430.1|WP_005413275.1|2276633_2277290_+|flagellar-basal-body-P-ring-formation-protein-FlgA
MRRVTSLLAIALAVASPWATAADWQPVASIRAAALTTLPAGSEGEAQVADALRLPKCGGALQVQPTANTTVEVSCPDAGGWRLFVPVKVRRNQTVLVLNRGIGTGETLTAADITTAQRDAARIAGAVLADPNAAIGRIARRPLQAGALLSNNDLVVQRLIKRGDNVALVSRRGSVEVRIAGRAMGDAGENERVSVENLSSRRIVQGTVDAAGDVIVAR
>NZ_CP040430.1|WP_005409577.1|2275438_2276383_-|chemotaxis-protein-CheV
MSHDLLNRIDQRTRLAGHNRLALLLFRLGGRQLFGVNVFKVQEVLRRPELFQVPGLPSQFSGVADVRGRSVPVLDLGLAIGHPEREPEADTSPGYLVVTEFNRSIQGFLVSGVERIVNIAVEDIHPPPELGAESSYLTAVTRFQGELIQVIDVESVLADIAQVRGEAVLDPAMAMPSDGPQLQVLVVDDSRVARQQIRSVLDQLGVGATLLSDGKQALDHLLQIHASGENPAERYAMVISDIEMPAMDGYTLTTEIRRHPGLAGLYVLLHTSLSGVFNNAMVERVGANAFVAKYSPHELADFVLDRLRKVALAA
>NZ_CP040430.1|WP_005409576.1|2274905_2275301_-|flagellar-basal-body-rod-protein-FlgB
MRNLITDYLGVHAQAMPLREQRMKLIASNLGNADTPGYKAQDLDFDAALRHAQGQDANGLMATTHEQHYEISSGLNPFQIAREGVQPSLDGNTVDPDAERAAYGRAALEYRASLSFVESKVRSMLTAITGQ
>NZ_CP040430.1|WP_088429338.1|2274494_2274902_-|flagellar-basal-body-rod-protein-FlgC
MSNLPIFDIAGSALQAQSVRMSTIASNLSNADTVAGSADAVYKPLEPIFQAVTSKTDPNITSVKVKEITQSDAAPIKRYEPGHPLADGDGYIYQPDVDPVAQMVNLISTSRNYQAGVEMLTTAKELALATLTMGR
>NZ_CP040430.1|WP_088428728.1|2287704_2287920_-|hypothetical-protein
MTLIRALPSLTDTERPRNASVREQLQQLEEVAREEIRELQQLADARPAPPRADEALLGLAWDLGLDGEALK
>NZ_CP040430.1|WP_005409587.1|2288018_2289209_-|chemotaxis-protein
MYSRIFIRLAAPLALTLLLPFAIGFEWPAALRWAILTTMTLSWLGFAWWTTRAQAHRSPEHARVLREQDQLLTELRNFVGNEIEGSRGEVERARDLIRQAVSSLGGSFDAMNRKSRQQSQALSRIVDRAGDEGNAGLDVARFAQHASHRMEQLVEALEQVSGQSSTTVQHIDQMAQHLDGIFALLEDVKSIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLSERSTTFNEQIRKLAHSSKDAIAKVRETVSHMASRDMDRSREARQEAAAMLDNVAQINASLGDGMREVSECARSIDGSVAEAVRALQFEDIATQALGGVHTHLDRLTAINREAVALQELLHRNGGVFDEEIATALQRTGSRLRELRSEWERPPHKPVAQQSMGAGTVELF
>NZ_CP040430.1|WP_005413279.1|2289428_2290043_-|high-frequency-lysogenization-protein-HflD
MSFTVDDRVLALAGIAQALQQVRRIADTGHSDAAAVRTAVDSVFRVDASSPQEVFGDRHALKSGLRLLHNYFRSQGQDPILPKLALSVLQLERRFVQDGATVNKVASGIERAQRQATELGDSGHPDVLANLGGLYADTISHLKPRVMVQGNPHYLGQAGVVAEIRALLLAAVRAAVLWRQLGGSYWDFLFSRKAMIEAVDRQLA
>NZ_CP040430.1|WP_012480134.1|2290039_2291182_-|tRNA-2-thiouridine(34)-synthase-MnmA
MSTPRVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWADDGSGDCRAEDDRRDAVAVCGLLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERIATGHYARVTQRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKTDLRRIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGQILDPADGSVIAEHPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSETAHWIAGSPPARRFECTAQTRYRQPDEPCTVQVLDDGSVLVTFARPQRAVTPGQSLVLYDGDVCLGGAVIAATDAPLEQRLRTTPSPFEVIAA
>NZ_CP040430.1|WP_005409590.1|2291178_2291640_-|NUDIX-hydrolase
MNATPDPRWAPHATVATVVVDGGRVLLVEETIDGRQVLNQPAGHLEPGESLAEAALRETREETGWTVQLTHFIGCYQWTAGDGTAFLRFCYAARPVSHDPAQPLDTGIDRALWLTPAELQAAGERQRSPLVWQVVADYLGGQRHPLSLVREVA
>NZ_CP040430.1|WP_005409591.1|2291641_2292112_-|hypothetical-protein
MKRTLLPALLIALAATGSAAAADADKAVARHLDKLGYTYEVDEDGDYRMVFDVEGDRTQMVYVRSSVEDFGTHNIREIWSPAYNAKTKQFPVAVANRLLEDSQDAKMGGWVKQDTTAMFVVKIDADATADQLSDAIDAAIRTADAMELELTKKDEF
>NZ_CP040430.1|WP_005409592.1|2292224_2292551_+|ATP-dependent-Clp-protease-adapter-ClpS
MPHESSPDSQHEHGVAVEAARPEVAPPPFYQVMLLNDDYTPMDFVVDVLQQFFSMDLDKATQVMLHVHTRGRGVCGVFTREVAETKVAQVNEYSRMNQHPLLCTMEKA
>NZ_CP040430.1|WP_088428729.1|2292704_2293517_-|APH(6)-family-putative-aminoglycoside-O-phosphotransferase
MSEPYLSRWRLRRDGPALRTPHARLWPVLTAAGEPAMLKISSETEEQNSHRLLRWWNGDGAARMLAHEGPAILIERARGDSLRQRSIEGDDDACTAILCQVLQRLHRPRSAPPAELVCLRRWFADLLQPRAVLPPLLEQCRSLAEGLLRDEQEIRPLHGDLHHDNVLDFGPRGWLAIDPKRLLGDRAFDYTTMFSNPDLCGPGIHVATRPERFAIRLEQVCALAELERTRLLRWIAASTALSAVWFRDDGDPADIDETVARMALEALAER
>NZ_CP040430.1|WP_012480136.1|2293655_2295941_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MFSKDLEHTIGQCYKRAREARHEFMTVEHLLLALLDNPSAQAVLKACGADADRLRQELEQAIEASVSRLAEDDGRDTQPTLGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYYLNQQDVTRLDVVNYLSHGIAKLGDEGEQSSSSPEGEGRMEGGEGEPKGDALTEFASNLNDQARAGRIDPLVGRADEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLARRIIEGSVPDVLADAVIYSLDLGALVAGTKYRGDFEKRLKSVLTALKKVPNAVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCIGSTTFQEYRGIFEKDRALARRFQKIDIVEPTVGETYEILQGLKSKYELHHGVTYSDEALQAAVDLSVKHIGDRLLPDKAIDVIDEAGARQRLLPEEQRKELIDVEEVEAIVAKMARIPAKQVSATDKDVLQHLERNLKMVIFGQDPAIETLSSAIKLARSGLGNPEKPIGNFLFAGPTGVGKTEVTKQLALQLGIELVRFDMSEYMEPHSISRLIGAPPGYVGFDQGGLLTEKIVKTPHCVLLLDEIEKAHPDIFNILLQVMDRGVLTDTNGREANFKNVVLVMTTNAGAAQASRRSIGFTKQDHATDAMETIRRSFTPEFRNRLDAVVQFQALGFEHILRVVDKFLIELEMLLQDKHVSLSATPTARDWLAHHGFDPLMGARPMARVIQDKIKRPLADELLFGKLVNGGKVSIDVRDDELVVETQAEPERLLPVTVE
>NZ_CP040430.1|WP_032966709.1|2296019_2296403_-|hypothetical-protein
MNALLPHVLLPAVLLVSLPLAAFAAEPSKPSNASECIALGANRDIRPSSTEREVLLRDGDNHYRVHLQKRCLGAAASASYVFFTPSTPERICGDARSTLKTDSNHCTVTRIEPIDAATFRRLAQQGR

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Crispr_ID: NZ_CP040430_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_5

2553465-2553568

Orphan

Consensus_repeat	Method
GTAGTGCCGGCCGCTGGCAGGCAACCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040430_5

>merge|NZ_CP040430|5|2553465-2553568|CRISPRCasFinder
GTAGTGCCGGCCGCTGGCAGGCAACCTCATGATCCGCGGGCGCACCGTGCATCGCCTCGGCACGCCCACCGATGCGGTAGTGCCGGCCGCTGGCCGGCAACCTC

>NZ_CP040430|5|4|2553465-2553568|CRISPRCasFinder
GTAGTGCCGGCCGCTGGCAGGCAACCTC	ATGATCCGCGGGCGCACCGTGCATCGCCTCGGCACGCCCACCGATGCG
GTAGTGCCGGCCGCTGGCCGGCAACCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_088429657.1\|2549939_2552699_+\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|236705
NZ_CP040430.1\|WP_141097979.1\|2545483_2546323_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_088429967.1\|2559061_2559913_+\|DUF4974-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
NZ_CP040430.1\|WP_088429662.1\|2548188_2549049_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP040430.1\|WP_088429981.1\|2553741_2554797_+\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|226654
NZ_CP040430.1\|WP_088429670.1\|2539184_2542583_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|182772
NZ_CP040430.1\|WP_005409813.1\|2555939_2556332_-\|DUF3224-domain-containing-protein	unknown	unknown	gnl\|CDD\|371584
NZ_CP040430.1\|WP_088429973.1\|2556887_2558060_-\|low-temperature-requirement-protein-A	unknown	unknown	gnl\|CDD\|377704
NZ_CP040430.1\|WP_154267888.1\|2542588_2545252_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|274362
NZ_CP040430.1\|WP_088429979.1\|2554789_2555431_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226932
NZ_CP040430.1\|WP_088429813.1\|2547118_2548078_+\|prolyl-aminopeptidase	unknown	unknown	gnl\|CDD\|130316
NZ_CP040430.1\|WP_088429672.1\|2538516_2539158_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP040430.1\|WP_088429965.1\|2559984_2562414_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP040430.1\|WP_088429969.1\|2558540_2559065_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP040430.1\|WP_154267889.1\|2555427_2555943_+\|DUF1697-domain-containing-protein	unknown	unknown	gnl\|CDD\|377954
NZ_CP040430.1\|WP_088429975.1\|2556365_2556800_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|225308
NZ_CP040430.1\|WP_088429659.1\|2549576_2549876_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_088429674.1\|2537782_2538460_-\|response-regulator	unknown	unknown	gnl\|CDD\|182771
NZ_CP040430.1\|WP_088429664.1\|2546339_2547005_-\|conjugal-transfer-protein	unknown	unknown	gnl\|CDD\|237542
NZ_CP040430.1\|WP_088429971.1\|2558069_2558336_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_088429657.1\|2549939_2552699_+\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|236705	PRK10517, PRK10517, magnesium-transporting P-type ATPase MgtA.	0
NZ_CP040430.1\|WP_088429969.1\|2558540_2559065_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	1.18548e-24
NZ_CP040430.1\|WP_088429662.1\|2548188_2549049_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	6.5088e-21
NZ_CP040430.1\|WP_088429981.1\|2553741_2554797_+\|GHKL-domain-containing-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	1.60304e-43
NZ_CP040430.1\|WP_088429670.1\|2539184_2542583_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|182772	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC.	2.86489e-109
NZ_CP040430.1\|WP_005409813.1\|2555939_2556332_-\|DUF3224-domain-containing-protein	gnl\|CDD\|371584	pfam11528, DUF3224, Protein of unknown function (DUF3224). This bacterial family of proteins has no known function.	1.69089e-41
NZ_CP040430.1\|WP_088429973.1\|2556887_2558060_-\|low-temperature-requirement-protein-A	gnl\|CDD\|377704	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA). This family consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes.	3.8282e-97
NZ_CP040430.1\|WP_154267888.1\|2542588_2545252_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.74015e-59
NZ_CP040430.1\|WP_088429979.1\|2554789_2555431_+\|response-regulator-transcription-factor	gnl\|CDD\|226932	COG4566, TtrR, Response regulator [Signal transduction mechanisms].	1.43175e-85
NZ_CP040430.1\|WP_088429813.1\|2547118_2548078_+\|prolyl-aminopeptidase	gnl\|CDD\|130316	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.	9.43161e-133
NZ_CP040430.1\|WP_088429672.1\|2538516_2539158_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.25514e-45
NZ_CP040430.1\|WP_088429965.1\|2559984_2562414_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.9319e-57
NZ_CP040430.1\|WP_154267889.1\|2555427_2555943_+\|DUF1697-domain-containing-protein	gnl\|CDD\|377954	pfam08002, DUF1697, Protein of unknown function (DUF1697). This family contains many hypothetical bacterial proteins.	3.24274e-41
NZ_CP040430.1\|WP_088429975.1\|2556365_2556800_-\|EamA-family-transporter	gnl\|CDD\|225308	COG2510, COG2510, Predicted membrane protein [Function unknown].	1.64494e-37
NZ_CP040430.1\|WP_088429967.1\|2559061_2559913_+\|DUF4974-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	1.96712e-53
NZ_CP040430.1\|WP_088429674.1\|2537782_2538460_-\|response-regulator	gnl\|CDD\|182771	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional.	2.40192e-51
NZ_CP040430.1\|WP_088429664.1\|2546339_2547005_-\|conjugal-transfer-protein	gnl\|CDD\|237542	PRK13882, PRK13882, conjugal transfer protein TrbP; Provisional.	1.87427e-76

>NZ_CP040430.1|WP_088429657.1|2549939_2552699_+|magnesium-translocating-P-type-ATPase
MSLLNAWFNAFLRSRRAGNLFRRRAMPEAGFGPGSAEAAPFALTTGLVTLAQQEEAELLATLGSHADGLSPHEAEERLVTLGPNEVDHEKPLPWWRHLWQCYRNPFNLLLTVLAAVSWLTEDIKATIVIGAMVLLSTLIRFVQEGRSNRAAERLKALVGNTARVLRRNPGTEAADVADQYFGAHLHSRRPARLLDLPIRELVPGDHIVLSAGDMIPADCRVLTAKDLFVAQAAMTGESLPVEKFAHPGDGLAGLLEQHNLLFMGTNVVSGTATAVVLATGNRTYFGTLAQRSTATDRAPTAFQAGVNSVSWLLIRFALVMVPFVLLINGWTKGDWTEAFLFALSVAVGLTPEMLPMIVTSTLAKGAVLLSRRKVIVKRLDAIQNFGAMEVLCTDKTGTLTQDRIALERHTDVFGHDSEDVLKFAYLNSHFQTGLINLLDRAVLEHVELQSSLRLSQDYHKVDEIPFDFERRRMSVVVSEREDHHELICKGAVEEMLAVCSTVRENGQDMPLDEHRLARVRQTTEELNEQGLRVVAVAMKETAASQTTYSQADECGLTLVGYVAFLDPPKESAAQALQALAAHGVEVKVFTGDNELVTARVCAQVGLDADTILTGPQIERMDDGALSRALHHHRVFARLTPLHKERLVRELRAQGKVVGFLGDGINDAPALRAADIGISVDSAVDIAKEAADIILLEKNLMVLEEGVIQGRRTFNNMLKYIRMTASSNFGNVFSVLVASAFLPFLPMLPLQLLVQNLLYDISQIAIPFDNVDEELVRKPLKWNPADIGRFMVFFGPISSIFDLSCFALMWYVFDARTPADQGLFQSGWFVVGLLTQTLIVHMIRTPKVPFLQSIAAPPLLLMTGLIMTIGVALPMSPLAGYFKLQALPAGYWPFLVAILFGYAVLTTALKRFYIRRYGWQ
>NZ_CP040430.1|WP_088429659.1|2549576_2549876_+|hypothetical-protein
MSYKILYITLRRLIGERDVAALRSQLLQHGPVMFARSLSLGSPRVVADALSLLPISERITVLRHLPYPLRDAMKPLCIGGSQRLRMQPWSPAVLAMRHA
>NZ_CP040430.1|WP_088429662.1|2548188_2549049_-|alpha/beta-fold-hydrolase
MKTSTEHLPEGISLTVREPENGPSNPVIILCHGFCGIKELLLPDFADAFAKAGFVAVTFDYRGFGDSDGERGRLVPAMQIEDIRSVIKWVRARSDVDSTRIALWGTSLGAGHVFGAAAQDGGIRCVISQLGFADGEEVVTGHMSEVEKAAFVATLDKMAERQATTGKEMLVGITKVLNDAESKAFFEENREKHPKMDVKIPFLTVRETLNYKPALAAARVTCPTLVVIAGQDRVNPPAQGRALFDAVASDEKTLYQEPDARHYDVYSGEYFRRIIKIQVEWLRAQL
>NZ_CP040430.1|WP_088429813.1|2547118_2548078_+|prolyl-aminopeptidase
MRTLYPAIEPYREFTLKVSDLHTLHVEECGTPEGIPVVYLHGGPGAGISPTHRRFFDPTRYRIVLIDQRGSGRSTPFGELRDNTTQDLVADIEKVREHLGIERWLVYGGSWGSTLSLAYAQAHPERATGLIVRGVFLGREIENRWFAEADGGARWIFPERWDRYEAYIPEAERGDMIAAYWTRMDGPDEATRIEAAQAWLGWEDNAATLQHDVDAQSTDDPLDTLAKARIEAHYFRNGIFLEPDQLLRNIDRIRHLPGVIVQGRYDIICPPRSAWDLAKAWPEARLEMVTSGHSANEPATVDALVRATDAFADRVTAGN
>NZ_CP040430.1|WP_088429664.1|2546339_2547005_-|conjugal-transfer-protein
MQATTTGTSTFNLTLGSGARELLKWIALLAMTGDHAAKVVFGGYVPVVSELGRIAFPLFALVMACNLAQPGADLRKSIRRLALWGLIAQPLHAFAFGSWLPLNILLTFTLAVVAVHALANNRPVLLLLAAGVLPMFVDYQWAGVGAVLLAWIAFRHRAWWLLLVGLAAVCGVNHNGWALLAVPVVALATRVPWRLPRWRWVFYGYYVGHLAVLGMVVFLRQ
>NZ_CP040430.1|WP_141097979.1|2545483_2546323_+|hypothetical-protein
MRLIGKHLFQTASLRLAGRMMRLLPLPLRRQVAELAVASCGRRLFPWSHLRIAGQLRALGLEPESAAQVRTRALAGRWLRQVRLGYLQRAPIDQLQQHLRAMNWNDPGCRWLSAGGRRRVVCLLPTGDLELALAALIDRPGSPAHYFICSPHRADSLLHRQLLMLQRRGHRLDVAHPRQHGAAWRILQRGATVVMVLDASLTGGQVQPTHAEPPAVRIARLAGVPLLLLGHRTGDNEQGTLHVVDEFAGDRLRNGAPQLQETARQFLREAPHDWHHLLH
>NZ_CP040430.1|WP_154267888.1|2542588_2545252_-|two-component-sensor-histidine-kinase
MSSASPSIAESLRQPRPHTAVAGAGELLALKRYPRRLMLACGAVLSLLSISVLITLIVVQVNAYEARRIAEFRRAHNALQIQLGRQDASYERLANMAEYAWGRNLALGQLDADAMRLAYLQGGQRLVVVANDSSQPQMALGLSTDGWAPQKLQRYLELSAAVSLIQRLTTTANEGEPAGVSYFFDPSGQYLSLDKGLTERGLIEALAAASRSEVFEHLRAPAQLLAPASRHDQVPLLESVSHAQRPRRSFGRHPITGEASLVSVFHANEGDRPIATFVAYEPMSRLEELLARNSQGHLALLDRDGLRVLAANAPDSNQALSMGDSDWVLLGDATRARFHNGRFTLALAVAGTPWTLVETYRWNDILRGIAPMLVSSGAMLLAALALLWFLLLWLHRRMYSPALRQVKAIYARDRRLRLLLDHVPVGVALMDAHTGDIQDWNGPLQRMDRATGARLLPQLREAMLKAELGQGPQIIEGELPLAADPAGRMFHRTRMIDGGDSWPGGVLLMVADVSEHEQAVQAEREQRMAAEACSQAKSNFVAAMSHEIRTPLHGIIGHLELLSRGQLAPEPRERVLRLRQSADSLMDVITDVLDLSRIESGQWSLHPERFSPVAMLERVALLYAPVAQAKGLQLDCVVDSSVPTAAVAPMAAIERVLRNLASNALKFTASGRVQLSVSCLRADGQAHLRVQVTDSGIGLSAAECERLFQPFVQADTSIPQRFGGSGLGLALCRQLSERMGGRIWVESTQGVGSRFLFEVPLMGTPGERPVVPLQGHQLALVAPAGVWRAELDRRLRQWGAQVHLAAPGEGCPPVAAVVLFEPSALELHRWSRAGDPVVKVCREGPLRPVWRGAVATVSCYASDALYQALQGALDQSTPNLTPNGAIG
>NZ_CP040430.1|WP_088429670.1|2539184_2542583_-|hybrid-sensor-histidine-kinase/response-regulator
MHPPIRIKVVTGSDAAHDPNVAGVATRLDDLRTLRRRLLFGGGALITALVLLAAIVSSIADVEESHAHERQSFNEARAAIDYYLYQRDRAYATSINGTDVFWRDQRAALVRAGTPLAERFHAQGQELVVRAEGRTAVPWLVLGARDNPVPPDELKAYLGMIEIFSAYTADSITSQESPGPVAMYAYEPQGRLIAVSNVRDEAQLLQTLGVATRQQAFARLLRDEAQIRRLSPRPGPIRAASREGRLLSRYGINPLNGQPSLVGMVTMAEGTTPYLRRVVFESIDNVKARLASRQQGRYLVLASDHSVVLATGGLSGQERALLSSAVGSGEAGTPTRRYAQGRFILTSTLPGVDWTLSHVYDWRDVWAVQGPYLLARSISAALIIGLLWWLLRRIDRRVFTPALADAARVYESEALSRTILGTAPVGLALLARDTGTPLLQNDAARALVGADTDAPVPLYARLAELGRSAAADDVLELHWSPDDQSHGTQLQVSIAQASYRDQAVWVCALRDVTAQAELEENLRQAREDSEAARQSAEAANRAKSAFVATMSHEIRTPLNGVLGHLELLARSPLQPGQRERLDRIRFSADALMRIISDVLDFSKIEAGQLDVEPAPFALRPLIESVALLFAPDALRKGVRLYFTVEAPPGVACVGDMHRIRQILTNLVGNAVKFTESGRILLRATLEEATGRRTLLRIQVVDSGIGMSPEQAAQLFQPFQQADASVSRRYGGSGLGLALCQQLARAMGGQVSVESTEGVGSSFTLLLPVRTQALDPEPAQPLLGRMITVLSTTPEWRGEMERLLAAWGAVTTVLDQPQPDVHGDVLLIVGDHRAWTAEEEQRLMRAHARTVYAHAQGPLAAETRGDRIEVSSYASGALLEALDSVARTSAPLPGPVQAAPTHSRGRVLLVEDNAVNRELIQQQLEELGFAVDAAEQGEAALALWQDGRYQAVLTDINMPVMDGYALARELRRRGYALPILAITATALASERERCLAAGIDDLLLKPLNLERLEAGLTSVSAEPVQAPPAPVSAPLRPTVSAAIRRIFVDTGDKDLQAIAEARAAGNAQHLLERVHAFKGALQMLGEKALAAQCGAIELSLRDGEEVDADALDALQAALGASLDAYRRDLEQPS
>NZ_CP040430.1|WP_088429672.1|2538516_2539158_+|response-regulator-transcription-factor
MTQLSIRVALADDHPVIRLGVQSALEEAPALHCIGAVADSTQLVDLLQREPCDVLVTDYAMPGGAHGDGLELLDYLHTHFPRLRIVVMTGLDQPALLHQLDARAVPGIISKGDDLQHVQAAVMAVYAQRRYLSPSVAELLQRRERRRVTALSAREQEVVALFISGLSVAEIALKLGRKKQTVSTQKINAMRKLGIESDAELHTFAVDLGLKSA
>NZ_CP040430.1|WP_088429674.1|2537782_2538460_-|response-regulator
MSIRIVIADDHPVILAGVREALGSERGIRVVAGATDSTALVDALSKLPVDVAVTDFSMPGGKYGDGVALIGFLRRRFPTVPLVVLTGVGGGQVLASIRSAGVAGIVAKADPISELAAAIRAAKTGTPYLSPDIQQQLAGQVDASEVALTRREAEVLRLIAEGLSATEIAAQLQRSRQTISTQKSSAMRKLGLKRSAEIFEYAVRTGVVSASQAMRARRADDETPT
>NZ_CP040430.1|WP_088429981.1|2553741_2554797_+|GHKL-domain-containing-protein
MPSLSPRRPLVLLALIVVMAAIFLIDTVTDYAVAAACFYAAVILAASRVLGARGLISLAFACIALTGLSFFLTRFGTYRIGLVNSVIGMLVIGITTYLALNMEAAKAAVQEAQGRLLRVARASTVGELTTSIAHEVNQPLAAIASSAEACQRWLAQDPPNVDKARQTVARILADAHRAGDVIARIRGLTQGAAPERRAFDLNQAVEEMLALSRSELDQHGVAVALLLDADLPPVHADRVQVQQVIGNLILNAVDAMEAIPAADRRLSLLTRRDGQQVSLSVRDRGVGLPADHPERVFDAFWTTKSHGLGLGLSLSRSMIEANDGQIRAERPAGGGACFVFDLPIASDVQHA
>NZ_CP040430.1|WP_088429979.1|2554789_2555431_+|response-regulator-transcription-factor
MRKPAAPAIDPAPIVYVVDDDPSVRAALEDLLASMGLQVRAFASTQAFLEHDLEDAPACLVLDVRMPGQSGLEFHRTMGSHGLQLPVVFITGHGDIAMGVNAIKDGAIEFLTKPFRDQELLDAIHKGIEIDRQRRRDGEALGALQLRWDTLNAGEREVVDGVVRGRLNKQIAGDLGVSEITVKVRRAQVMRKMDARTLVDLVRMYDRLQAGTP
>NZ_CP040430.1|WP_154267889.1|2555427_2555943_+|DUF1697-domain-containing-protein
MNVHVALLRAVNVGGTGKLPMRELVAMCEDAGFADVCTYIASGNVVLRSSLDETGVRQTLGQRLQAYAGKPVGVLVRSANEIAGVVARNPFAQAAGNRVVALFLDGSLPADPLDGVTGRRDEQLALGTREIFIHYSAGMADSRLRIPGAAQGTARNLNTVARLATMAAELR
>NZ_CP040430.1|WP_005409813.1|2555939_2556332_-|DUF3224-domain-containing-protein
MQGEARGTFEVNLLPISGNDGPIGVMSIDKVFHGDLQGSSVGQMLAFRSPVQGSAGYVAMERVTATLAGRHGGFTLQHNGLMTRGTPQLSVVVVPDSGSDGLLGLAGTLEITISEGRHDYRLLYSLPEEP
>NZ_CP040430.1|WP_088429975.1|2556365_2556800_-|EamA-family-transporter
MQNVPQWLVWAGLSACFAALTALFAKVGVKGVDSDLAMAIRTLVVAAVILPLVVVTGKWSNPLLLPGRTQLFLVLSALATGASWLFYFRALQSGELAKVAVVDKFSVVLVIVLAYLLLGERPTLREWSGIGLMLAGVIVLATKK
>NZ_CP040430.1|WP_088429973.1|2556887_2558060_-|low-temperature-requirement-protein-A
MSTRLRPPALRQRDGHHARVTYEELFFDLVYVFAVTQLSHHLLHHLDLVGVMQALVLWFAVWLGWQYACWVSNWFDPEAPRIRSLLFVTMLLALLMSSSIPEAFAERAWVFAGAYATMQVGRTVFVLLEVGRSHPLAPNFRRMLAWVSVSACFWLAGAAAEGNLRLALWAVAVACEYISPMFGFAFPGLGRSHTREWTIEGGHLAERCQLFVIVALGETLLATGGVLSEVEQWSAAVVSAVLATFAGTIAMWWLYFGISSRDATAAITHSEDPGRMGANFHYVHALLIAGIIATAVGNDLVMDHPEAAVTPVYATVLVAGPLIYLLGSALYKRVVYGRAPYSHLFGAVALVVLDVVLPHTHLLAAGWLTSAVLLAVGLMDTRLKRRLKRA
>NZ_CP040430.1|WP_088429971.1|2558069_2558336_-|hypothetical-protein
MHVLLVMVGGVLLLGVFLLFGRLWSVGQSQLPTALLAFIATWLLVTLANMWVGVSKAGYAVREELPILLLVFAVPALLAGLLYWRLAR
>NZ_CP040430.1|WP_088429969.1|2558540_2559065_+|RNA-polymerase-sigma-factor
MSQLPSLPPPALPLVSSLVRHYEELVEYLRRRFRSPGLAREVVHDVCVRLLERPAAYDARQPIALLRRIAHDTAVDRCRAADLRRHWVEARAELPDDACPRPGPEQQAQGQQALQRLGATIERMPCRRQQVFILHKIHELPQAEVARRMGIGQKAVERHLRLAMADCQRSAGLR
>NZ_CP040430.1|WP_088429967.1|2559061_2559913_+|DUF4974-domain-containing-protein
MSPQPPPSPSQPPVQPATTDQVLDQHRDALKERFPMPSADALQRRRGRRAAKIVLPLLLITATGVFIADPAWQVHDYRSAVGERRGIRLPDGSHLLLDAGTHLQVRRHIRSRQVVLVQGQARFQVQHSTWRPFEVEAGAVHVRNYGTVFDVDRQGSLSEVTLWRGEVGVRVDGGGAEQRLKPGQRVLAQPGSLSPPEAVDPDRADWTRGRLQFDRMPLAEVLRILQRYHDRPIVLDDPVLGPLQVSGVFDADRAETVLALLPEILPVQVHTAPDGSLHLRARD
>NZ_CP040430.1|WP_088429965.1|2559984_2562414_+|TonB-dependent-receptor
MTRPVPPAALRRLAPTLLAACLCAALPATAQTAASAPVELHLPAGPLQASLTALARQSGIQLLFAADSVSGRSAPAVDGRYTPREALQRLLAGQGLAMQERSPGVFVVSAAPAPAKPRIPARAASSAPSSASTPSLARVTVSASTARMPQGETAMPNTITVLTREDIAQQLALGSDVSRVLSSQIPAFAPAREKMSNYGETMRGRGILYMVDGVPQSTPLRDGSRDSHTIDPAMIERIEVIHGANALQGIGGTGGIVNIITRSAPSEPGAFLLDTNVSYSAAVPSRHDDNGQRGSALVGVRGEQFDLVAGLAYEKQGLYHDGEGRSIGTNAQGELMDSTSSNIFAKLGWNIADGHRLQIMANRYELRGLDNYLAINGDYRTGRPTISVPGDTPLDPPMNRSRSLTVDYSAADLLGGRFQAQAFAVDFEGRYGASQWDPWGNTGANAAWDQTQNESDKRGFKLTQSWSRIADTSLDVTLGLDGLRDRTHQVLLASGMNWVPQTTYQSLSPLLQLHWWPTDHLMLSGGLRYEKGELEVGDYTTLPRYGARKVAGGKPTMSETLPNFGAVWYINDRLNAYASYSEGYTVADVGRVLRAINRDGQRVDSLIDLSPVVSDNREIGLEYDDGRFSGDIAYYTSESRLGSVLIYDPGIDAYAVQRQATRVEGFESNLRLRLGDSRLGLGYARANGRYDADVDGRLDSDLAGVNIAPNRLTAFWEQSWTPQLSTRLQASHAFDRDFDLRGVRVAEFKGYTTVDLVARYTLDKHAFTLGVQNLADKQYISYYSQTTPSNPSYFSGRGRVLTLGWQYRY

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Crispr_ID: NZ_CP040430_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_6

2596471-2596593

Orphan

Consensus_repeat	Method
CGACCCACGGATTCCGGTAGACGCCCACCTTGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040430_6

>merge|NZ_CP040430|6|2596471-2596593|CRISPRCasFinder
CGACCCACGGATTCCGGTAGACGCCCACCTTGGTGGGCGCCGTTGATGTCCTGCGTGCCAACCAAGGTTGGCACCTACCAAAAGCGCCGCGACCCACGGATTCCGGTAGTCGCCCACCTTGGT

>NZ_CP040430|6|5|2596471-2596593|CRISPRCasFinder
CGACCCACGGATTCCGGTAGACGCCCACCTTGGT	GGGCGCCGTTGATGTCCTGCGTGCCAACCAAGGTTGGCACCTACCAAAAGCGCCG
CGACCCACGGATTCCGGTAGTCGCCCACCTTGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_088429888.1\|2599128_2599452_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP040430.1\|WP_049403365.1\|2600354_2601842_+\|glycine-betaine/L-proline-transporter-ProP	unknown	unknown	gnl\|CDD\|182611
NZ_CP040430.1\|WP_005409850.1\|2594377_2595052_+\|response-regulator	unknown	unknown	gnl\|CDD\|182612
NZ_CP040430.1\|WP_088429876.1\|2587980_2588724_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187620
NZ_CP040430.1\|WP_088429924.1\|2583804_2584689_+\|copper-homeostasis-membrane-protein-CopD	unknown	unknown	gnl\|CDD\|224195
NZ_CP040430.1\|WP_088429894.1\|2605834_2607289_-\|DUF560-domain-containing-protein	unknown	unknown	gnl\|CDD\|368004
NZ_CP040430.1\|WP_154267894.1\|2593067_2594315_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP040430.1\|WP_088429920.1\|2585429_2586797_+\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_CP040430.1\|WP_088429892.1\|2603688_2605284_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226434
NZ_CP040430.1\|WP_154267892.1\|2586932_2587874_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
NZ_CP040430.1\|WP_005409854.1\|2599457_2599874_-\|host-attachment-protein	unknown	unknown	gnl\|CDD\|370820
NZ_CP040430.1\|WP_024956515.1\|2602646_2603273_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226648
NZ_CP040430.1\|WP_088429922.1\|2584734_2585433_+\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_CP040430.1\|WP_088429886.1\|2596680_2599032_-\|glycoside-hydrolase-family-92-protein	unknown	unknown	gnl\|CDD\|377950
NZ_CP040430.1\|WP_005409860.1\|2605293_2605698_-\|response-regulator	unknown	unknown	gnl\|CDD\|381122
NZ_CP040430.1\|WP_005413623.1\|2603276_2603618_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NZ_CP040430.1\|WP_088429890.1\|2601926_2602541_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_154267893.1\|2588824_2591902_-\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	unknown	unknown	gnl\|CDD\|226220
NZ_CP040430.1\|WP_088429884.1\|2595044_2596427_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP040430.1\|WP_088429880.1\|2591898_2593071_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_088429888.1\|2599128_2599452_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	3.96285e-19
NZ_CP040430.1\|WP_049403365.1\|2600354_2601842_+\|glycine-betaine/L-proline-transporter-ProP	gnl\|CDD\|182611	PRK10642, PRK10642, proline/glycine betaine transporter ProP.	0
NZ_CP040430.1\|WP_005409850.1\|2594377_2595052_+\|response-regulator	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	2.491e-68
NZ_CP040430.1\|WP_088429876.1\|2587980_2588724_+\|SDR-family-oxidoreductase	gnl\|CDD\|187620	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs. 1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.49379e-113
NZ_CP040430.1\|WP_088429924.1\|2583804_2584689_+\|copper-homeostasis-membrane-protein-CopD	gnl\|CDD\|224195	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism].	3.11114e-20
NZ_CP040430.1\|WP_088429894.1\|2605834_2607289_-\|DUF560-domain-containing-protein	gnl\|CDD\|368004	pfam04575, DUF560, Protein of unknown function (DUF560). Family of hypothetical bacterial proteins.	1.0751e-46
NZ_CP040430.1\|WP_154267894.1\|2593067_2594315_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.04914e-26
NZ_CP040430.1\|WP_088429920.1\|2585429_2586797_+\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	2.68361e-115
NZ_CP040430.1\|WP_088429892.1\|2603688_2605284_-\|PAS-domain-containing-protein	gnl\|CDD\|226434	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms].	5.33789e-31
NZ_CP040430.1\|WP_154267892.1\|2586932_2587874_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.71127e-97
NZ_CP040430.1\|WP_005409854.1\|2599457_2599874_-\|host-attachment-protein	gnl\|CDD\|370820	pfam10116, Host_attach, Protein required for attachment to host cells. Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells.	1.84971e-30
NZ_CP040430.1\|WP_024956515.1\|2602646_2603273_-\|hypothetical-protein	gnl\|CDD\|226648	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown].	3.44526e-28
NZ_CP040430.1\|WP_088429922.1\|2584734_2585433_+\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	2.16797e-117
NZ_CP040430.1\|WP_088429886.1\|2596680_2599032_-\|glycoside-hydrolase-family-92-protein	gnl\|CDD\|377950	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92. Members of this family are alpha-1,2-mannosidases, enzymes which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation.	0
NZ_CP040430.1\|WP_005409860.1\|2605293_2605698_-\|response-regulator	gnl\|CDD\|381122	cd17586, REC_PFxFATGY, phosphoacceptor receiver (REC) domain of PFxFATGY motif single-domain (stand-alone) response regulators. This subfamily is composed of stand-alone response regulators (RRs) containing the PFxFATG[G/Y] motif; RRs with such a motif are also called ''FAT GUY'' response regulators. Included in this subfamily are Sphingomonas melonis SdrG, Sinorhizobium meliloti Sma0114, and Erythrobacter litoralis EL_LovR. SdrG is involved in the control of the general stress response. Sma0114 is part of the Sma0113/Sma0114 two-component system (TCS) that is involved in catabolite repression and polyhydroxy butyrate synthesis. EL_LovR is involved in a light-regulated TCS. PFxFATG[G/Y] RRs are typically associated with histidine-tryptophan-glutamate (HWE) histidine kinases that constitute a subclass of the larger histidine kinase superfamily characterized by an altered ATP binding site, which lacks the F-box that is normally an integral component of the ATP lid. The PFxFATG[G/Y] motif is involved in conformational changes after phosphorylation that results in the activation of the RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.07952e-23
NZ_CP040430.1\|WP_005413623.1\|2603276_2603618_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	0.000325701
NZ_CP040430.1\|WP_154267893.1\|2588824_2591902_-\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
NZ_CP040430.1\|WP_088429884.1\|2595044_2596427_+\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.62531e-53
NZ_CP040430.1\|WP_088429880.1\|2591898_2593071_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.40681e-38

>NZ_CP040430.1|WP_088429884.1|2595044_2596427_+|sensor-histidine-kinase
MTERVHSLRGLLLRRLWLPLLVLLLCSAVGSFALARFYAGQVYDRWLLDSAMSLSELVTVQDGRASIEITPAVSRMFSWDTADEVHGEVVDAEGGRLYGDLPEALPRPAIAAGNDDDAIYYDARVRGQAVRMVEVVVSAGPGHDIRLRVAETLRKRHRLERKLLLTSVPFQAAILALAAWLAWSGTGAAARHANLVARKLASPRPDPLAPLDPAQEAPRELWPAVEAYNALLQRLDAMQDAQRRFVSNAAHQLRTPLAAMQVELESSLRQHDPQAQQLALSGTLAGLARLQHLVNQLLMLSRSEDPHGSALPLQPVDLAALARGVVERYADRALAAGVDLGYEGPDDGVQVQGDPQLLREALGNLLDNALRYGAVPGVITLGVRQETEGVQAWVDDDGAGIAEAERTRVTERFYRASSEGDGCGLGLAIVAEIAQRHGAMLKIETSPLGGARVGVRFRSC
>NZ_CP040430.1|WP_005409850.1|2594377_2595052_+|response-regulator
MRILLIEDDAALADGLIRALQGAGHLCDHLSRGLHAPAALASAPYDVMVLDLSLPDVDGLDLLSRLRNDGATLPVLILTARDGVEDRILGLDRGGDDYLAKPFALGELEARLRALSRRRSDAPAQKRLGRLCFDSIRNEVQVEGQRIELTARELSLVEALMQHPGRTVTKQRLFDALYSWDHEANLSVIEVHVSRLRRKLEQARAGVGIRMLRGLGYRLEAAGD
>NZ_CP040430.1|WP_154267894.1|2593067_2594315_-|TolC-family-protein
MNFSSRLAAVLATLLCAPAASALSLQEAQRAMEAHNPDLRAAALELRGVQGDAQTAALRPATELSIGTSKISPKHGIGPGRWQDKRVDSTVGLGWTWERGGKRALRIRQADALLEVAGLEMLDARHRQQVALHETYFGLKGAQERARIADANRQSSAEQMAAADKQVATGAMAPVDRARLAVDDLAVADAAREAALDLRDARHALGLLLGRDDSHDLSADDPWPDPAGRVDTRAFDPQQRADLRAARSRLAAADAGVALARSERHRDIQLGVEAEREPTDISGVTWGVSLTIPLGGPSRARGAIQRAEADRDSAALELQVLQREARAELEQLQASAQSAAQRRSDYEGLQSDAARKAVQGIELAYRRGAASLTDLLDARRSWRDFEAALIEARADHAIALARWEAATSVAEGESR
>NZ_CP040430.1|WP_088429880.1|2591898_2593071_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKSPVAHRSRARHAVLPALLALALLGGCGREPASYTEDAPQISAGQIQFPAGSRQLDVLRSEAVTAGASASLQLPGRVVWDETRSSALRTPLPGQVARIEVQPGQKVKAGQVIAWITSPEFGQAQAEGVRGRAELQQARKELERTRELHAAGVASGRELDEAEANFAGSQADHARATAFAKAYGNGQRVDQRLPLRAPIDGVLVERRMSPGMSVSPDSEQPLAVIGDPDRLWLLLDVPESLAGRMKAGMQVSVPGADGQLLQATLQHVDDFVDSERRVVQARAELDNRARGFKAGQYVRAQVALPAEGGVSLPDAAVLLIDGKQVVFVEEGKGRFVRHAVHAEELGDGRLWVRDGLAVGSRVVVEGGLLLQQLVDSAPATVSTGTGHAAP
>NZ_CP040430.1|WP_154267893.1|2588824_2591902_-|CusA/CzcA-family-heavy-metal-efflux-RND-transporter
MIDRLIAYCLRQPLMVMLALLLFIGGGIAAFRVLPVEAFPDVSDTQVTVVSLHPGRAAEEVEREVTMPLEVALSGIPHSVRVFSHTQFGLSMIILTFDDKADDYFARQQVLERLQGVELPEGVTPELEAMSSAVGEIYRYVLKGPHMTPTQLRTVQEWTMERSLRTVPGVADVISFGGFARTFQVKPDLDKLRDRGISLGEFAEALEKGSSNAGGGYVERGQQQFLIRGVGLMRSPSDIGNVVVAQRGGTPILVRDLAGIADTGLPRQGLVGQDGNDDAVFGMVLMRKGENPSDVLDALHARIAEIEANQLPHGVSIEPFYDRSWLVSTTLKTVFSNLLEGAVLVFLVLWLFLYNARAALIVAAMMPLALLSTFLGLHLWGVPANLLSLGAMDFGIIIDGAVIVTEHIVSRLSKLPPAADRKTRFSTILSAASEVGRPTFFSMLIIIAAHIPIFTLQRQEGRMFAPMAYSVTSALIGALILALTVVPLFCYWWLRRDRMRDGNPLMDRLTGWYRPVLERALARPRAVVLTAVALLVGTLALGTRLGSEFLPELDEGSIWLTATLDPSTSLGEAQQQSRRIRELVGTFPQVSTVVAKLGRPEDGSDAKGANQIEALVALKPEKEWPKGVDKRQLVSDLQRTLEQRIPGPEFSISQPVRDNILESISQIKGQVVIKVSGSDLDVLNQQAQAILGQVRGVEGVESAFIDRDGSLPQLQIEIDRDRAARYGLNVRDVDEVIETALGGRQVGELWEGDRRFPITLRLNDADRDLQRLRTVPVGIGDGHTVTLSDVADFRMASGAINISRENAQRVKAVSIFIAGRDMGSVVADMRKRVDASVQLPEGYRLEWSGEFENQQRAMKRLGWVIPLSVLIIFVLLFDAFKDISSAALILANVPLAMIGGILALWLTGIPLSVSAAIGFIALFGQAVLNGVVMLSRFAQLREQGMDLLQSVVQGSLQRLRTVLMTALLAMFGLLPMATSHAIGAETQKPLAVVVIGGLLSAMLLTLLVLPTLYYWVHRRREARTG
>NZ_CP040430.1|WP_088429876.1|2587980_2588724_+|SDR-family-oxidoreductase
MTLSPARSVALVTGGSRGIGAAISRRLAADGHTVAINYAGRRDDAEALAAELNAAGAQAIALQADVADPQAVRQLFDAIEARFGGIDVVVNSAGVLQLAPLADTDDALFERVIGINLKGPFNVLRESARRVRDGGRLITLSTSVVGIKLENYSVYAASKAAVETMGAILSKELRGRNITVNAVAPGPTATDLFLDGKSPELIERLAKMNPLERLGTPEDIAGAVAFLAGADGGWINGQVLRANGGMV
>NZ_CP040430.1|WP_154267892.1|2586932_2587874_-|LysR-family-transcriptional-regulator
MDRFTAMRAFVRIVERRSFTRASEDLGLPRATVTDAIKALEQRLGVRLLHRTTRLVVPTLEGEAFYGRCLRLIADMDDAEAAFRDAPPRGPLRIEVHGTLGRHLLFPHLPEFLQRYPEIELDVSEGDRYVDLLREGVDAALRVGTLADSDLAARRLTMLREVTVAGPGYVQAHGLPDTIESLEQGHQMVGYRSSATGQLIPLEFQQAGQVRYVPLQARVRVSGADAFLGAALAGLGIIQAPRYRMDPYIARGQLVELLPETPPTASPLSLVYPRNRTPSPRLRVFIDWVTGVFEQTGVAGQRPALPTRGARAG
>NZ_CP040430.1|WP_088429920.1|2585429_2586797_+|heavy-metal-sensor-histidine-kinase
MSLRRSIAVRLTLLFAIVATLVLAALGVAIYVSARHDLVAQDFVELENKVALIRDLADNGPASTRGKRLAEALGHHPDIAFHIVDGRGAVLFSTAPALLREHARGQPIDAAPRRHDWILADGRCMHALHLRQTLADGSPLVTLLAIDDNRHADFLQRFRHLLAIAIIGAAVASSLLGGYVVRRTLRPLRTLADEARQITAGRLQRRLSARSAPAELEQLAQTLNGMLARLQQDFARLTEFSGDLAHELRTPITNMLTQVQVVLAHPRSNEAYRETLASCAEELQQLAQTVGDLLYLAQAEAPGALPSRELVALDGVVDSLLEFYDLLAEDRKLTLRRDGVASVEGNRLMLHRAIANLLSNALKHAAVGSEVRVRLLEADGVCKVSVHNLGTPIAAEALPRLFDRFYRGERGRHEGAGLGLAITRAIAQAHGGSVSVVSDDTGTVFELVLPGAAAR
>NZ_CP040430.1|WP_088429922.1|2584734_2585433_+|heavy-metal-response-regulator-transcription-factor
MKLLIVEDEPKTGNYLRQGLIEAGYVVDLACNGVDGLHLAGSGEYQLVILDVMLPGLDGWNVLSRLRESGWQVPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQAQPQAERIVIADLVVDTLRRRVERGGQRITLSQKEYTLLELLARRRGEVLPRSLIASQVWDMNFDSDTNVIDVAIRRLRAKIDDDFDAKLIVTVRGMGYVLEAPDDGAVHSG
>NZ_CP040430.1|WP_088429924.1|2583804_2584689_+|copper-homeostasis-membrane-protein-CopD
MAELSPYALRLALYLVLMLLFGRMLFVRPRLPRGVSLALALIALAVVVTDAITRLSGVLGIAPVDIDPATAHWFLTGTPVGEAGLLRTVAVLAMLPLLAAATPLRGLRRLALLALSATALASLSWNGHAAAGDGFGGTMRLVAGIVHLLAAGAWVGAIAAILQLALRPQGLRLRERTRELWQAAHSFALPGTIIVALLAMTGTYTYVDLGGSIQTLTGTAHGRWLLLKLALVVGMLGLAALHRWRLVPALAVSIRGGWQPRPLRSLRQSLACESLLALLVLACVAVLGTLDPLA
>NZ_CP040430.1|WP_088429886.1|2596680_2599032_-|glycoside-hydrolase-family-92-protein
MPMPTLDRRLLIAVAATAMLASGLASAAPARTAADKAYASVDPFIGTGGEGHTYPGATVPFGMVQLSPDTRIQPREKAYGWAAGYRYDDSSIVGFSHTHFSGTGHSDLGDILLMPFTGSPGLERGDPEKPRSGYASRFRHDDEKAEPGYYAVTLDDYKVRAELTTSTRVGVHRYAFPKGTDAKVLLDMRTSMYDYPGKVLWSRVRVRADGTVTGFRETRGWAPGRQLYFAMRFSRPLAGHELHNTEQDIVYKGFPPPGEKDPSQRAQIEGRQLVGTFAFGKLDAPLVVKVAISPVSEAGAIANLDAEVADFDFDRVRAQAKQEWTQALSVLDIDAPEHARRSTYTALYHTLLGPTLFMDADGQYRGSDNAVHKADGFTNYSTFSLWDTYRALHPLLTLVQAEKRNSDFVNSMLAHHEHSPYGMLPVWSFHGLEDWCMIGYHAVPVIADAYVKGIRGFDADKALKAMVETANYGPYDGIAQYRELGYVPIDEEGEAASKTLEYAFDDWTIARMAQAMGKGDIAATFDKRAANWRNAFDKDTGFMRARKRDGSFRTPFDPSASGYGTDYTEGNAWQYSWYVPQDVAGLAAAHGGSDKLLARLDEVFNAKVDPSIFEHMEDITGLIGWYAHGNEPSHHVAYLYSYAGQPWRTQARLKQIMDTQYADRPDGLAGNDDVGQMSAWYVFTALGFYPVAPGSGEYILGRPFLPKTAMRLPNGKTFTIVADGLDDRHTYVGSVSLNGKPLQRTFLRHDEILAGGELRFSMQAEPNKDWPGQGAQAPYSMSR
>NZ_CP040430.1|WP_088429888.1|2599128_2599452_-|thioredoxin-family-protein
MPFMRDHLSAEPDRLDVEAQVGWLLLEFGAPWCGHCQAAQPALQAFVEANDLPHWKIEDGKGRPLGRAFKVKLWPTVALLHDGEEVARVVRPLDSADLMSLQGALPD
>NZ_CP040430.1|WP_005409854.1|2599457_2599874_-|host-attachment-protein
MTRRIPEGTLVVVADGGSARVFTNVGSDHQLALKQEGELRLQDISEQGVSGQGPAGAVPKDMSVSQLNEATFAKQVAEQLNEDALKNRYAHLVLIADPTTLGRIRPLLHKETQARLLGDIAKDLTNAPLADIQKALAA
>NZ_CP040430.1|WP_049403365.1|2600354_2601842_+|glycine-betaine/L-proline-transporter-ProP
MQDTPEAHAHFGWFKRRRHLKVDEITVVDTPMLKRAVGAAALGNAMEWFDFGVYGYLAVTIGQVFFPSSNPTAQVIAAFATFTVAFLVRPLGGLVFGPLGDRYGRQKVLAFTMILMALGTFAIGLIPSYERIGIWAPVLLLLARVVQGFSTGGEYGGAATFIAEYSTDRNRGLMGSWLEFGTLGGYIAGAGTVTALHMLLSSEQMLDWGWRIPFLVAGPLGLLGLYMRMKLEETPAFRAFAEEAEKREHDRPGLGALFQVHGRQLLVCMGLVLVFNVTDYMLLTYMPSYLSVTMGYAESKGLLLIIIVMLVMMPLNIVGGLFSDRLGRRPMIIGACIALLVLAIPCLLLVGSGNDGLIFLGLMLLGLALVCFTSSMPSTLPALFYTPVRYSALSIAFNVSVSLFGGTTPLVTAWLVERTGDPLVPAYYLMGAAVIGLVTMLFVKETAGLPLRGSPPAVGSDKEAAALLKSDVPVTVDPTLPPLPEAAEPEQVKPA
>NZ_CP040430.1|WP_088429890.1|2601926_2602541_-|hypothetical-protein
MHGPATFRSSSICLVLAALALSCMPTMAASPAAKRPSPPSLVQAFHAAEANLRLIPGGDIESGFRPVWTAVADLDGDGRAEVVYFYTSDYSGGSFAQSNVVAVMTALTANDPRGQENPNSLSPVEAEDYAAIRRYGYADDAAEQIPGAIRAIRIQGDRIVVDFTVSAGATVCEWKSPNRHVCPPDGNYTWTLRWTPEKLTYIKQ
>NZ_CP040430.1|WP_024956515.1|2602646_2603273_-|hypothetical-protein
MGRILVLAGVNGAGKSSLLGTWLEAEGLGWFNPDSFTRRLVEAGWPLPDANAEAWQEGTRRLRQAMADGTDFAFETTLGGNTIPGLLREACEQHHVAVWFCGLASVELHIARVAARVAAGGHDIPVEKIHARFDSARENLLDLLPHLAELHVYDNSAPADADGCVEPLPVLAMAHGQLQYPVSVAELLHTPDWAKPIVMRAMELNTSD
>NZ_CP040430.1|WP_005413623.1|2603276_2603618_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MTLPLDLPGLEKAPASSVKTRGWPSLMRTVREKQALVITNHNHPEAVIVDIRTYQELLAKAAGGDAGERSEELLRLRGEFDQTLASLQRGEGLGKVLGQPIRRGRKVTLGRPL
>NZ_CP040430.1|WP_088429892.1|2603688_2605284_-|PAS-domain-containing-protein
MSRRPEDIHAAKLRGQMPPASQLHVRHDGMAARIARHDWSSTPLGACEQWPPHLRATVDLMLAHGFPMIVLWGEQLVQLYNDGYAEILADKHPGGLGQPTRECWPEVWHINGPIYQRVWQGETITYEDKLYPLARRGRLEDVWFTITYSPIRGEEGRINGVLVTMFETTAAHVAQSAREREEQKRREADRRLALAFKVLPVGVCIVDTEGRLQLSNDQMRAYLPSGKVPSTDEVNLHRWRGWHADGSAIGPEDFAIARAMRGETVVPGLEFQYLHDDGRARWTRVAAAPLRDGDGEVSGVFAIAVDIDDLKRATERQSVLLAELQHRVRNIMSTIHAIAWRTRESVSSVDEYAERLCGRLMSLARTQSLLTRGANAGVCLRGMLDEEIAAQTPAAAAYRLQGEDVLLPPKAAEVLSLAIHELASNALRHGALTHEDGRIEVTWDLQVQAGQPWLGLHWCERHAEVEDWEQPRQRGLGRALIEQRVPYELAGSGELRFGPQGLDAWIRFPLRERDSLLQTDAPGAAAGGSGR
>NZ_CP040430.1|WP_005409860.1|2605293_2605698_-|response-regulator
MLEAGNKPEGLKGLRVLVAEDEFAIAMFLVDYLELKGAQVVGPAGDLQALGRLVDTHPIDVALLDINLGGEQVYPLADRLAEAGIPFLLTSGYDDNLPSRFASAPRCTKPYHIEALVQQLAALVAAPQVSAGIA
>NZ_CP040430.1|WP_088429894.1|2605834_2607289_-|DUF560-domain-containing-protein
MRHPIFLVILLLAAADVRAQQDDLRRVLEQGSELRHQQQDQQRLQQAESARPTITIDGQTLRVERTVDDLGQALYLSLQHQQWGAAQRFLDEYIELPGHDPLLRHYAQGGLARVAGNHRRAANEYEALLAAQPDFLPARLELARVHAEDQRDRDAEALFTAIAGGINADDPATAGVRGRVDAYLAALKARKRWKGALAAGPAWSDNINRSSASRTCLFGVRDTCIIQRNLPDAQRAMGLDYDGNLERRWALAGHHGVYVRALAFGQAWRGHSAYNELNASVQAGYSWRSARHTLQIAPSYDYQGLGNRALQGGSGLHGEWQYALDARSLLRLEADWKRQRYRQRGLASNYDGELAAVYATWFRALNPRWTLFAGLDLSDSRAANPANGYRQRGLRLGAARQWTGTTATVFVSLRERDYEAWSPLLEARREDSEQNLIAVVRSEHLAVAGLVPSLSLRYARIDSNVGWLYSHDRSLLSLKWERAF

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Crispr_ID: NZ_CP040430_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_7

3027811-3027910

Orphan

Consensus_repeat	Method
GGTAGATGCCCACCTTGGTGGGC	CRISPRCasFinder

1 spacers

DEDDh,csa3

The CRISPR arrays of NZ_CP040430_7

>merge|NZ_CP040430|7|3027811-3027910|CRISPRCasFinder
GGTAGATGCCCACCTTGGTGGGCATGGATCCAGGACGGCGCCAACCAAGGTTGGCGACTACCGCGGTACAGCGCTCTGGTAGATGCCCACCTTGGTGGGC

>NZ_CP040430|7|6|3027811-3027910|CRISPRCasFinder
GGTAGATGCCCACCTTGGTGGGC	ATGGATCCAGGACGGCGCCAACCAAGGTTGGCGACTACCGCGGTACAGCGCTCT
GGTAGATGCCCACCTTGGTGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_005413921.1\|3037083_3040257_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NZ_CP040430.1\|WP_088431487.1\|3035799_3037068_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|169982
NZ_CP040430.1\|WP_005410242.1\|3027960_3028905_-\|5'-nucleotidase	unknown	unknown	gnl\|CDD\|377624
NZ_CP040430.1\|WP_049448997.1\|3020297_3020936_+\|FMN-binding-negative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377290
NZ_CP040430.1\|WP_154267919.1\|3040981_3041899_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185110
NZ_CP040430.1\|WP_044570577.1\|3029916_3034893_-\|glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|377452
NZ_CP040430.1\|WP_005410251.1\|3043246_3044176_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|369777
NZ_CP040430.1\|WP_005410245.1\|3035143_3035800_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NZ_CP040430.1\|WP_005410250.1\|3041944_3043093_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
NZ_CP040430.1\|WP_033835127.1\|3021010_3021673_+\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|238448
NZ_CP040430.1\|WP_005413911.1\|3021693_3022215_+\|3-hydroxyanthranilate-3,4-dioxygenase	unknown	unknown	gnl\|CDD\|183930
NZ_CP040430.1\|WP_049443314.1\|3028952_3029726_-\|NAD-kinase	unknown	unknown	gnl\|CDD\|179876
NZ_CP040430.1\|WP_005410237.1\|3022377_3023652_+\|kynureninase	unknown	unknown	gnl\|CDD\|130873
NZ_CP040430.1\|WP_088431493.1\|3019975_3020290_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_033833585.1\|3040410_3040704_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_005410232.1\|3019668_3019968_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_005413913.1\|3023683_3025051_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|223727
NZ_CP040430.1\|WP_088431491.1\|3025050_3026490_+\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NZ_CP040430.1\|WP_088431489.1\|3027228_3027780_+\|DUF2939-domain-containing-protein	unknown	unknown	gnl\|CDD\|378575
NZ_CP040430.1\|WP_005410240.1\|3026486_3027173_+\|DUF2461-domain-containing-protein	unknown	unknown	gnl\|CDD\|274138

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_005413921.1\|3037083_3040257_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP040430.1\|WP_088431487.1\|3035799_3037068_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|169982	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit.	3.0369e-87
NZ_CP040430.1\|WP_005410242.1\|3027960_3028905_-\|5'-nucleotidase	gnl\|CDD\|377624	pfam06189, 5-nucleotidase, 5'-nucleotidase. This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (EC:3.1.3.5).	1.21892e-153
NZ_CP040430.1\|WP_049448997.1\|3020297_3020936_+\|FMN-binding-negative-transcriptional-regulator	gnl\|CDD\|377290	pfam04299, FMN_bind_2, Putative FMN-binding domain. In Bacillus subtilis, family member PAI 2/ORF-2 was found to be essential for growth. The SUPERFAMILY database finds that this domain is related to FMN-binding domains, suggesting this protein is also FMN-binding.	9.26576e-50
NZ_CP040430.1\|WP_154267919.1\|3040981_3041899_+\|hypothetical-protein	gnl\|CDD\|185110	PRK15188, PRK15188, fimbrial chaperone protein BcfB; Provisional.	0.0063978
NZ_CP040430.1\|WP_044570577.1\|3029916_3034893_-\|glutamate-dehydrogenase	gnl\|CDD\|377452	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyze the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.	0
NZ_CP040430.1\|WP_005410251.1\|3043246_3044176_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	8.59407e-24
NZ_CP040430.1\|WP_005410245.1\|3035143_3035800_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	9.42099e-15
NZ_CP040430.1\|WP_005410250.1\|3041944_3043093_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	6.30209e-177
NZ_CP040430.1\|WP_033835127.1\|3021010_3021673_+\|carbonate-dehydratase	gnl\|CDD\|238448	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	7.72217e-108
NZ_CP040430.1\|WP_049443314.1\|3028952_3029726_-\|NAD-kinase	gnl\|CDD\|179876	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed.	3.07945e-157
NZ_CP040430.1\|WP_005410237.1\|3022377_3023652_+\|kynureninase	gnl\|CDD\|130873	TIGR01814, kynureninase, kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. [Energy metabolism, Amino acids and amines].	0
NZ_CP040430.1\|WP_005413911.1\|3021693_3022215_+\|3-hydroxyanthranilate-3,4-dioxygenase	gnl\|CDD\|183930	PRK13264, PRK13264, 3-hydroxyanthranilate 3,4-dioxygenase; Provisional.	2.02528e-108
NZ_CP040430.1\|WP_005413913.1\|3023683_3025051_+\|FAD-dependent-monooxygenase	gnl\|CDD\|223727	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].	7.53257e-39
NZ_CP040430.1\|WP_088431491.1\|3025050_3026490_+\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NZ_CP040430.1\|WP_088431489.1\|3027228_3027780_+\|DUF2939-domain-containing-protein	gnl\|CDD\|378575	pfam11159, DUF2939, Protein of unknown function (DUF2939). This bacterial family of proteins has no known function.	3.55163e-30
NZ_CP040430.1\|WP_005410240.1\|3026486_3027173_+\|DUF2461-domain-containing-protein	gnl\|CDD\|274138	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein. Members of this family are widely (though sparsely) distributed bacterial proteins about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown. In several fungi, this model identifies a conserved region of a longer protein. Therefore, it may be incorrect to speculate that all members share a common function.	3.55639e-91

>NZ_CP040430.1|WP_088431489.1|3027228_3027780_+|DUF2939-domain-containing-protein
MKKLTALAVLLVLALAAWWFGGPYMAVHGLSKAIEERDTARLERYVDFPRVRSSLRAQLNDYLVRQAGPDVAASPFGALLYGLGDQLGGAAVETMVTPTGIGAMLQGHVLWKRGRNELQGGDAFGPTEPARPLKNAEHHFEALDRFVIDVDRGPDQPPMKVVLEPQGLRWKVVDLQLGMSATP
>NZ_CP040430.1|WP_005410240.1|3026486_3027173_+|DUF2461-domain-containing-protein
MSTYFSDASFKFLRSLARHNDKAWFNDHRQQYEDHVRQPFLRLLGDLQPALAEVSEHFRADTRGVGGSLFRIHRDARFSNDKSPYKTWQGARLFHERRREVAAPSFYVHLQPGESFVGAGLWHPEPETQRRVRHFILDNPGSWKAAAHAPALRKRFDFEESEKLVRPPRGFPADFEFIDDLKHRNWVMWRSLDDATMTGPRLLSTLGKDLAGLGPFVDYLCAALDLEF
>NZ_CP040430.1|WP_088431491.1|3025050_3026490_+|exodeoxyribonuclease-I
MADSFLFYDLETFGQDPRRTRISQFAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYEREWRNGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANHVREGDAHEALSDVRATIGMARLFKQSQPRLWDYALKLRDKRFVGGLLDVAAMKPVLHISMRYPASRLCAAPVLPLAVHPTINNRVIVFDLEGEIDDLLELPAEVIAQRLYMRASELPEGAARVPLKEVHLNKVPALIAWNHLRADDHARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRAATVADVDASLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPPERQRWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEATDDTRRQALLQSLRDWGQHLQETL
>NZ_CP040430.1|WP_005413913.1|3023683_3025051_+|FAD-dependent-monooxygenase
MIAHASRSLSIIGAGLAGSLLAILLSRQGWRITLYERRGDPRVADYESGRSINLALAERGRNALRQAGVEDEVMARAVMMRGRMVHPREGEAQLQRYGRDDSEVIWSIHRSDLNTTLLELAEQAGATVHFHRRLHTVDFDAGYARFIDDRDDSPHDIRFDTLIGADGAGSALRAAMNRRAPLGEDIAFLDHSYKELEIPPADDGSFRIERNALHIWPRGHYMCIALPNHEGTFTVTLFLPNQGDPSFATINTGAQAEALFAREFADTLPLIPNLRADWEQHPPGLLGTLTLDRWHQQGRAVLIGDAAHAMVPFHGQGMNCAFEDCVALARHLMEADDLEGAFAAFEAERKPNARAIQQMALENYLEMRDRVADPAFLLQRELEQELQRRWPTRFVPHYTMVTFLHTPYAEALRRTELQRDMLVAATTGHDSLDNIDWAALEAQIHAQLPVLEGAH
>NZ_CP040430.1|WP_005410237.1|3022377_3023652_+|kynureninase
MSDLLSRTHAIALDAADPLRPLRNEFLIPRHGGGEQTYFVGNSLGLQPRGAQAAVQEVMKQWGELAVEGHFTGPTQWLSYHRLVSAQLARVVGALPSEVVAMNTLSVNLHLMMVSFYRPTAQRPVILMEAGAFPTDRHAVEAQIRFHGFDPAECLVEVQPDEANGTISLTAIERAIAEHGPRLALVLWPGVQYRTGQAFDLDAITRAARLQGARIGFDLAHSVGNLPLRLHDVAPDFAVWCHYKYLNSGPGAVAGAFVHERHHRDTTLPRFAGWWGHEEATRFQMAPQFTPAIGAEGWQLSNPPILGLAPLRASLDLFERAGMEALRNKSLALTGMLEALVRARLSGVLDIITPAEPQRRGCQLSLRVIGGRERGRALFEHLRGIGVLGDWREPDVIRISPTPLYNRYLDVHHFVEEVEAWAGL
>NZ_CP040430.1|WP_005413911.1|3021693_3022215_+|3-hydroxyanthranilate-3,4-dioxygenase
MLASPINLHAWIEENRHLLKPPVGNKMIDNGDFIVMVVGGPNSRTDYHYDEGPEWFYQLEGEMVLKVQEDGAVRDIPIRAGEIFLLPARVPHSPRRPPGGIGLVVERKRLPHEKDGVIWHCERCNHKLHEEFFPLQNIETDLPKVFARYHASLELRTCSQCGHVDPLPVPAAG
>NZ_CP040430.1|WP_033835127.1|3021010_3021673_+|carbonate-dehydratase
MKDIHRLLQNNRDWADRIAKEDPGFFQQLSKQQHPEYLWIGCSDSRVPANQIIGMAPGEVFVHRNVANVVAHTDLNCLSVVQYAVDQLKVKHILIVGHYGCGGVHACLHNTRVGLADNWLRHVGDVVQKHQGILDAIEDDELKHARLCELNVIEQVANLCRSTIVEDAWARGQKLMVHGWVYSLKNGRVSEMGIDVGGPEELKPAYEKALSYVPRQGRRD
>NZ_CP040430.1|WP_049448997.1|3020297_3020936_+|FMN-binding-negative-transcriptional-regulator
MFTPRAFAETDLLWLDRLLARDPFVTVLTPGSDGLPELTRMPVLYRRDGDQIELRGHWARANPQSRHSGAAKVLVDGPHGYVSASWYPDKEPAARVPTWNYAAAELRGQLQTFDDADALAELVGAISDRFEASVGQAWRFDAARAEHGPELRAIVGFRFQVEHVQLKLKLSQNHPDANQQAVIAALEALASPSSHELAQWMRWHREQSASSG
>NZ_CP040430.1|WP_088431493.1|3019975_3020290_+|hypothetical-protein
MNDITTSRDSWWLASLGNTLIWARLRVRPAGTAEVLDSDGNTLSYDSEDTARSQLFDAEFVEYDGLDEEDALVRGFSLHEVQPPQADSDEGLRGRMVQSLGGRA
>NZ_CP040430.1|WP_005410232.1|3019668_3019968_+|hypothetical-protein
MTLFFALCFVGVAVAGFSAFVIFWPLTLVHVRDRHPALAARFGSGAFLKPDALAWLLRRDYRQQPDRSLSGLATPAWVSLLTLLAGLGMAALLWLASLW
>NZ_CP040430.1|WP_005410242.1|3027960_3028905_-|5'-nucleotidase
MGDNSPRLLTVAVTSRALFDLEESHALFESDGVAAYAEFQRQHEDDILGPGVAFPVVRKLLALNQGASPENPRVEVILLSRNSADTGLRIFNSIQHYGLGIIRATFTAGEPTWPYVKPFGTDLFLSANPESVRSALRHGIAAATILPKPPGETAAAAADQIDTGRPAGQLRIAFDGDAVIFGDESERISREQGVEAFGRHERERAREPLSGGPFRGFLSALHTLQEVFPAGESAPIRTALVTARSAPAHERVIRTLREWGVRLDEALFLGGRHKGPFLQAFGADIFFDDSQHNIDSAREHVAAGHVPHGVANEG
>NZ_CP040430.1|WP_049443314.1|3028952_3029726_-|NAD-kinase
MSDTPRIAFLASTTEPAQMARAAMVSRYGDYTPEQADVLCPLGGDGFMLQTLHRHGHLGKPVFGMKLGTVGFLMNQYRGDDDVQARIARAEPANLRPLEMVALTESGTSTGSLAYNDVSLLRQTRQAAHIGIDLNGQERVAELIGDGVLVATPAGSTAYNYSAHGPVLPLGSHTIALTPLAPYRPRRWRGAILKADTEVRFRVLDPYKRPVSVTADSHETRDVVEVTIRESKDRRVTLLFDPEHNLEDRILSEQFVF
>NZ_CP040430.1|WP_044570577.1|3029916_3034893_-|glutamate-dehydrogenase
MKPQKTAAKTVKNKTKPAESEVAVTAGFSLEPVYTALRKRYPAAAQAEAVAFATDFYKRMESDEFPHHSAEEWAALAAETLEFARARKAGKANVRVFNPTAKANGWESPHTVLQIVNDDMPFLVDTVTMSLAEQGVGVHVLGHPVLRFTRDKAGKLVKVGEGDAESVMLLEIDRQPAEAMAAIEQAINKALDEVRAIVRDWQPMKDKALALADDLGKRQLPVDDASRKEAQEFLRWAADNHFTFFGYREYRVEKQGKEDVLAPLNDTGLGLMRGKDKSAARPVKTLAAQGLNATSGLKDALILTKTNARSRVHRAGYMDYIGVLEFDAKGKIIGEQRFLGLFTSSAYNRRPWEIPLVRQRHEHVMKQSGLAPASHSGKALRHILETLPREELFQSSEDELFRTAMGVLGLQERVRSRLFLRRDKYSRFISALVYLPRERFNTDVRLRIEAMLKDALHGEYVDSSVVLGESPLAQVHLIVRPKPGEMLDVDTAELEQKLAQVLRNWQDDLREALVARHGETEGLRIAARIGKALPAGYIEDNSTAVAANDVSQLDALTGPDDLRLSLQAVPRESGDGLRLKLYRQLDDIPLSDALPMMENMGLRVIAERPYRLSVDNAPVYVQDFEVESTAGAIDAASVDEAFGETFARVWHGDAENDGFNRLVLAAGLHWRQVAMLRGYCKYLLQTGVPFSQAYVEGTFARYPLLARLLVELFEARFDPATGHESKDDIAAGQAQLKAHFDVLAAGDDATLKVLKTVVDARKGDRDAQMQAARDALLKLMDRVSSLDEDRILRSFMGVIDATLRTSYYQTDANGQHGHVISFKFDSALVPDLPKPRPYREIFVYGPRVEGTHLRFGAVARGGLRWSDRREDFRTEVLGLVKAQMVKNTVIVPVGAKGGFFAKTPPVNGDRDAIFANGVACYKLFIQGLLDITDNIVNNKIVPPVDVVRHDMDDPYLVVAADKGTATFSDIANGLAIAHGFWMGDAFASGGSVGYDHKGMGITARGAWESVKRHFRALGRDSQTQDFTAVGVGDMSGDVFGNGMLLSRHIRLVAAFDHRHIFLDPNPDAATTFVERERLFTVPRSSWADYDAKLISKGGGVYPRSLKSIEITPQVREALGLDDNVKALSPNDLMSAILKAPVDLLWNGGIGTYVKAASEQHSDVGDRANNALRVNGGELRCKVVGEGGNLGMTQLGRIEAAQAGVLLNTDFIDNSAGVDTSDHEVNIKILLNDVVRAKKLTVEQRNKLLASMTDEVAELVLNDNYRQNQALSLMERMAVKRLGSKQHFIRTLEQQGLLDRQIEFLPSDAELSQRKARGQGLTRPELSVLLSYSKLVAFAQLLESDIPEDPYLSKELQRYFPTPLQKKYADAMERHRLKREIIATAVTNQTINRMGATFLMRMQEDTGRSIAEVAKAYTISRETLDARALWAQIDALDGKVPESVQIDALEVIWKLQRSFVRWLLSRPGAMPGITEAVNRYQGPFNDIRVASGVLPDSQRPTYEALVAEWKEKGLPSALAQQLAELHFLEPAFDIIELARTRKLKPVDVSKVHFRLGDALQLPWLFEQVDALEVNGRWHAVARGVLRDELAANHRNLAGQVLGTKGSSAEAKVAAWMGRDDNSLRFTLAMLAELAEQKTLDYPTVSVAVQRLGQLAAHGA
>NZ_CP040430.1|WP_005410245.1|3035143_3035800_+|TetR/AcrR-family-transcriptional-regulator
MNPAYLPVALDARDERVFDAVRELLAQQGMQMSMEAVAQHAGCSKQTLYSRYGSKQELLRRVMQRHVGHATGAMVRALRTDDLRASLLQFATDFLEHFNQPHVGQACRLIAADAAQFPEEARTLYRHGAGALTLHLAEWIETVCMRGQLRHDDPHFMAELLLSMIAGQDFDKQRFHTPHRDDARLRRRWAEFSVDSFLRAFAPQPSPAPSSNQPRSSS
>NZ_CP040430.1|WP_088431487.1|3035799_3037068_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MTAPLRTLALTCAVAVALAACKKPEQQTPPPPEVGVIDAKPQTLPLQRELVGRLSPFRSADVRARVPGVLLKRVYQEGSQVKQGQTLFLIDPAPLRASLNASEAQLASARATYANAKVAADRARSLAPQQFVSKSDLDNAESAERTALAAVKQAEAAVTSSRISLGYTEVTAPISGVANKQQVTEGALVGQGDVTLLTTVDQLDPLYVNFSLSVDELTQLRAQQAKGALALSGDGKATVNVKLADGSTYSEPGTLDFSSTTVDPATGAVSLRALLPNPQQILLPGAFVSFQANLGERNNAFLVPQQALLRDTTGGYVMVVGADGKVARKNVKTDGAQNGNWLVSDGLAAGDKVIVAGVQKVKEGAPAVAKPWTPGQDANGKPAAGGAAPAGTAPAAGKAPADAAKPEQADAAKPAATDSNKQ
>NZ_CP040430.1|WP_005413921.1|3037083_3040257_+|multidrug-efflux-RND-transporter-permease-subunit
MPKFFIEHPVFAWVVAILISLSGVIAILNLGVESYPNIAPPQVTVSATYPGASADTTEKSVTQVIEQQLTGIDHLLYFSSSSSSNGRAQITLTFETGTDPDIAQVQVQNKVSLATPRLPSEVTQQGVVVAKANAGFLMVVALQSDTPTINRDALNDIVGSRVLDQVSRIPGVGSTQQFGSEYAMNIWLNPEKMQGYGLSASQVLAAVRAQNVQFAAGALGSDPSPEGQHFTATVSAEGRFSSPQEFENIILRANADGSRVLLKDIARVAFGANNYGFDTQYNGKPTGAFAIQLLPGANALNVAEAVRAKMDELQPSFPAGVTWFSPYDSTTFVKISIQEVVKTLFEAVFLVFLVMLIFLQNFRATLIPTLVIPVALLGTFLGMWMIGFTINQLTLFAMVLAIGIVVDDAIVVIENVERIMTEEGLAPKPATQKAMTQITGAVVAITVVLAAVFIPSALQGGAAGEIYKQFALTIAISMAFSAFLALGFTPALCATFLKPTHNDNPNIVYRTFNKYYDKISHTYVGHITSAVRHAPRWMILFVVLTALCGFLFTRMPGSFLPEEDQGYALAIVQLPPGSTKGQTNEVFAQMRGILEKQDGYEGMLQVAGFSFVGSGENVGMGFIRLKPWEERKFTAPEFIQNMNGAFYGIKEAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGYEQLTQARNILLGQAAQKPDHLVGVRPNGLENAPQLQLHVDRVQAQSMGMSVSDVYSTIQLMLAPVYVNDFFYEGRIKRVTMQADGPYRTGQESLKSFYSPSSLTKNADGTNSMIPLNTVVKSEWVSAPPSLSRYNGYSAINIVGSQAPGTSSGEAMQTMESIVNDDLPAGFGYDWSGMSYQEILAGNAATLLLVLSIVVVFLCLAALYESWSIPVAVLLVVPLGVLGALGLSMLRGLPNDLFFKIGLITVIGLAAKNAILIVEFAVEQRAAGKNLRDATIEAARLRFRPILMTSFAFIMGVIPMAISTGAGANSRHAIGTGVIGGMLFATLLGLLMIPVFFVVVRRMLGDKLDEPSKEFMERQRDADAAHRPDR
>NZ_CP040430.1|WP_033833585.1|3040410_3040704_-|hypothetical-protein
MLIYRGAGLLTLLTPIAAVLLILILFPDPAVGRGNTSLSQVLLAFGLGSAINTVLGFVLNRKPRAPGQHAPHHFFFLPMQWPALAIVAACVVIAVLR
>NZ_CP040430.1|WP_154267919.1|3040981_3041899_+|hypothetical-protein
MERAPLRRFSRPALLLGALFAASSVQDAHAAGVLVCDNCRDPRALALYSGTGPTIVVDFQQRRLHGFDVEYDRELRRYRATRAQIPEPINGSFNRIMGMLDNNVPTVQFAPRQWAGRGVQYEVHPDDPQYANGIGFPEEHKNLNAYDVVQMATERFRLESAMGKAFTGATTSSRAWNSMATFLSSIGLSFVSKALGIDGAIYRITWRDGSKTTLAIVSSSVDTARYVQGQSKDANGNMIPDGAATSPGLAQHFAGTYNFNSRDDLDRWIDSGRLYGVNMFPGAPPESLQIVCEWNGTDIVCRLPR
>NZ_CP040430.1|WP_005410250.1|3041944_3043093_-|acyl-CoA-dehydrogenase
MDFSFTEEQLMLQDVARRIAQEKIAPSAEHHDRTGEFPLDNIRLLGENGLMGIEVPTEYGGAGMDPVAYVLAMVEVAAADAAHSTIMSVNNSLFCNGILTHGTEQQKQTYVRAIAEGEAIGAFALTEPQSGSDATAMRCRAVKQADGTFVINGKKSWITSGPVARYIVLFAMSEPDKGARGITAFLIDTDKAGFGRGKTEPKLGIRASATCEIEFNDYVAQAEDVLGQEGEGFKIAMSVLDAGRIGIASQAIGIARAAYEATLEYVKERKAFGAAIGTFQMTQAKIADMKCKLDAALLLTLRAAWVKGQGKRFSTEAAVAKLTASEAAMWITHQAVQIHGGMGYSKEMPLERYFRDAKITEIYEGTSEIQRLVIARNETGLR
>NZ_CP040430.1|WP_005410251.1|3043246_3044176_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MDLEDWSTRLKVFADATRVRLLALLEQEELTVAELSAITRLAQPRVSTHLARLKEAGLVRDRRAGVSAYYRFDEAQLDPAQRALWHALSNGSDDPLLRQDAERVAAVLAHRASDQNWADSVAGDMERHYSPGRTWEALARTALPLLETGDVLDIASGDGVLAELVAPHAKRYICIDTSARVVAAASERLRRLPNVEVREGDMHALPFKDNSFDLVVLMHALTYASKPAQAVTEGARVLRPGGRLLLCSLARHEHKAAVEAYGHVNLGFSDKELRRFVDKAGLQVSSLETVTREKRPPHFEVISLIAHKP

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Crispr_ID: NZ_CP040430_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_8

3490052-3490155

Orphan

Consensus_repeat	Method
CGGTCGTGCCGGCCGCTGGCCGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040430_8

>merge|NZ_CP040430|8|3490052-3490155|CRISPRCasFinder
CGGTCGTGCCGGCCGCTGGCCGGCAACGCCAACCAAGGTTGGCATCCACCAGAGCCGGGCCATGCATGTGAACGCAGGCGGTAGTGCCGGCCGCTGGCCGGCAA

>NZ_CP040430|8|7|3490052-3490155|CRISPRCasFinder
CGGTCGTGCCGGCCGCTGGCCGGCAA	CGCCAACCAAGGTTGGCATCCACCAGAGCCGGGCCATGCATGTGAACGCAGG
CGGTAGTGCCGGCCGCTGGCCGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_088430803.1\|3487133_3487811_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP040430.1\|WP_005410642.1\|3491303_3492437_-\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|130988
NZ_CP040430.1\|WP_005410636.1\|3486166_3487129_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|341130
NZ_CP040430.1\|WP_005410631.1\|3481491_3481983_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237855
NZ_CP040430.1\|WP_024956936.1\|3496450_3498832_-\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|227289
NZ_CP040430.1\|WP_154267969.1\|3498896_3503804_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP040430.1\|WP_043034522.1\|3492590_3493586_+\|YhdH/YhfP-family-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176183
NZ_CP040430.1\|WP_005410646.1\|3495288_3495771_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239311
NZ_CP040430.1\|WP_005410635.1\|3483807_3485934_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP040430.1\|WP_154267968.1\|3488526_3489819_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP040430.1\|WP_088430801.1\|3482873_3483413_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_005410644.1\|3493674_3494046_+\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NZ_CP040430.1\|WP_005410630.1\|3479378_3481469_+\|catalase	unknown	unknown	gnl\|CDD\|236886
NZ_CP040430.1\|WP_005410634.1\|3483427_3483718_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_005410647.1\|3495800_3496376_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104
NZ_CP040430.1\|WP_005410640.1\|3490190_3490376_-\|DUF2065-family-protein	unknown	unknown	gnl\|CDD\|225782
NZ_CP040430.1\|WP_088430805.1\|3487746_3488409_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_005410645.1\|3494134_3495028_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP040430.1\|WP_005410632.1\|3481992_3482733_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP040430.1\|WP_005414169.1\|3490443_3491307_-\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_088430803.1\|3487133_3487811_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.52062e-25
NZ_CP040430.1\|WP_005410642.1\|3491303_3492437_-\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|130988	TIGR01933, Protein_HflK, HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (SS 8/27/03].	8.29771e-117
NZ_CP040430.1\|WP_005410636.1\|3486166_3487129_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.09716e-26
NZ_CP040430.1\|WP_005410631.1\|3481491_3481983_+\|hypothetical-protein	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	1.32779e-15
NZ_CP040430.1\|WP_005410646.1\|3495288_3495771_+\|peroxiredoxin	gnl\|CDD\|239311	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs.	3.28546e-78
NZ_CP040430.1\|WP_005410635.1\|3483807_3485934_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.60468e-79
NZ_CP040430.1\|WP_154267968.1\|3488526_3489819_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP040430.1\|WP_005410644.1\|3493674_3494046_+\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.3106e-35
NZ_CP040430.1\|WP_005410630.1\|3479378_3481469_+\|catalase	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_CP040430.1\|WP_005414169.1\|3490443_3491307_-\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	3.90151e-107
NZ_CP040430.1\|WP_154267969.1\|3498896_3503804_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP040430.1\|WP_005410640.1\|3490190_3490376_-\|DUF2065-family-protein	gnl\|CDD\|225782	COG3242, COG3242, Uncharacterized protein conserved in bacteria [Function unknown].	1.95241e-11
NZ_CP040430.1\|WP_043034522.1\|3492590_3493586_+\|YhdH/YhfP-family-quinone-oxidoreductase	gnl\|CDD\|176183	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.22776e-162
NZ_CP040430.1\|WP_024956936.1\|3496450_3498832_-\|penicillin-binding-protein-1C	gnl\|CDD\|227289	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane].	0
NZ_CP040430.1\|WP_005410645.1\|3494134_3495028_-\|DnaJ-domain-containing-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	1.98574e-74
NZ_CP040430.1\|WP_005410632.1\|3481992_3482733_-\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	5.63229e-08
NZ_CP040430.1\|WP_005410647.1\|3495800_3496376_+\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	2.09173e-34

>NZ_CP040430.1|WP_154267968.1|3488526_3489819_-|adenylosuccinate-synthase
MGQSVVVLGAQWGDEGKGKIVDLLTEEIGAVVRFQGGHNAGHTLVINGKKTVLHLIPSGILRDDALCLIGNGVVISPAALQTEIAELEASGVEVRSRLKISPAAPLIMPYHIALDQARERAAGGKAIGTTGRGIGPAYEDKVARRGIRIADLHYPKQLEELLRTALDYHNFVLTKYLNTDAVDFQKTFDEALAFGEYVQPMKSDVAGILHDLRKQGKRVLFEGAQGALLDIDHGTYPYVTSSNTTVGGALAGSGVGADSIDYVLGIAKAYATRVGGGPFPTELDDEVGQGIRDRGAEYGASTGRPRRCGWMDIVALKRAVAINGISGLCITKLDVLDGMEKLKVCIAYEYNGKRTEYAPLDAQGWEECTPVYLEFPGWSENTHGITNWDDLPPAARAYLRSLEELAGCPISIVSTGPDRDHTMVLQDPFA
>NZ_CP040430.1|WP_088430805.1|3487746_3488409_-|hypothetical-protein
MKGETVVRITLWVLWSLWGIACLVLVLGAAANTLASRTQTVPLVLSPGATAQITVYRLVDDQLRLRLRYAADGTEADPEVLLRIETPTDHGDFRAGERSGVAGQGINRALASVESSGLMASYFGYGRGDALPRGRSWLRVTVLEVDPALADRAASVELQPPLDLLKLTDLDYVWLWPFFFWKVAALLLLIPGAALAVFTFTLRRWQHRASKQADSAVGTD
>NZ_CP040430.1|WP_088430803.1|3487133_3487811_+|M23-family-metallopeptidase
MRLSQLIVLGLLLGLGAGWWLRRDAGEPVAASLPEAQPAAAVAPAKGSVAPLDTAPAPAATVPSAARTADAPSGLLLPVQGVLASQLRDTFTDARSEGRVHDAIDIMADAGTPVLAVADGTVEKLFDSERGGLTIYQFEPSGRWCYYYAHLQRYADGLTEKQVIRRGEVIGYVGSTGNASAEAPHLHFEVHVLGPEKQWWKGESINPYPLLNPPASKPGAASAAR
>NZ_CP040430.1|WP_005410636.1|3486166_3487129_+|L,D-transpeptidase-family-protein
MPLPVYRSTLLALSLLASPAFAQAPPPGLPAPIAEKAGPDTAARSALHAQVLLDRANFSPGQIDGEVGSNQRRAVSGFQAAHGLTVTGELDDATWQALQADTVTPLASYTLTSEDVAGPFQAVPKGPAAQAKLKSLGFNNVEESLGERFHASPELLKLLNPGVDLSKAGNRIQVPNIAPSPLPKAAKVVVDKSDSSLQLLDAQGKVIAQVPVSSGSQHDPLPIGEWKILGVYRDPPFHYNPKLFWDARKGEKKATLPPGPNNPVGRVWIDLSKPHYGLHGTPEPGHVGKTESHGCVRMTNWDALRVADAVDTSVPVVMQE
>NZ_CP040430.1|WP_005410635.1|3483807_3485934_-|methyl-accepting-chemotaxis-protein
MNYLRNVRVAWRLGLGFGLLLLLVAAVVATGATASVVQKRAMQQVVDVSVAKVRLLSQMLDANNQMMVVRREMLIRQGDDRGHDEQRIADLVKRYEASWTAYQALPSDAEGKAIAETIAAKRAIARPLNKQTSELMEQGDYPGAVALTLGPVQEAANGWNKALSDGVDFEEKESREAAAEAIRLGERSLLQLLVLGGVALLVGIAASVMIGRSLTGPLARAVNLAERLSRGQLDQEFRLGGRDELTQLGEAMASVRQSVQAAIGAQLQMAEQHEAGAIRYRMDASAFPGDFGRMVQATNSLVESHVQVELLMAEVMQRYAIGDLSRDLPDYPGEKGTLTRTLAAVKQSLMAINAQIDALARAARAGDFSMRGDAAAFQFQFKAMVEHLNGMMASSQASIADVSDVLRAISHGDLTARMDGEYDGVFARMRDDANTTTAQLTGIVRGIQVAADSINNAAQELAAGNNDLSRRTEQQAANLEEAAASMEELTSTVRQNAELARQADSEAHAAGAAVRETEQAMAQMASVMGEIDQSSARISEISTVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRAGVAAKEIKELIEDAAAKVKSGLAVTVESEAAIARVAQASSRTTQLMSDIAAASKEQAAGIEQVNQVVVQMDQVTQQNAALVEEATAASRALEEQAHALTTSVAVFKVEQGARMPIVPAQAA
>NZ_CP040430.1|WP_005410634.1|3483427_3483718_+|hypothetical-protein
MKMRRLLSWTGLALCVVYLLLTAWLVHGAQSDADPKGAYILMSLPITLQSAALDAIGAGSLLYGKPWSTAYAVLVPPTLLLLYAAGWLIERAARGR
>NZ_CP040430.1|WP_088430801.1|3482873_3483413_+|hypothetical-protein
MRWTYALAMMVMMLPLNSSANDGWINGAGKAMPETDAMKSSGGFAASLLVTSDADWRAKWETPPETTPGFTQADEVHPGGELFLLTFLSNPQLDENRVAKVHCDLRMLRPDGSTSIDERDVPCFTAALPGPPTLLYMTNLHLKFVAEAGDPKGTWTAQVVVRDLLRNVSLPLQAHFDVR
>NZ_CP040430.1|WP_005410632.1|3481992_3482733_-|alpha/beta-hydrolase
MGIGSEEKPGCDSASPTPQHVLMLPGLDGSGRLSIPFLSALQAHGLTTQAITLPAQGGQDHATLAQRLWSQLPGHPFILLAESFSGPLAVELATRQPAGLRGLVLAATFARRPVPLPAASAALLTPAWPLPPVALLARLLLGRWRTREHLSMLRDALARIPAATLRQRAAATLRVDVRALLPAIDVPTLCLHACHDRLLWPPSVAELQALLPDARHVSLEGPHLLLQARADAAAAEVAAWMRTLSP
>NZ_CP040430.1|WP_005410631.1|3481491_3481983_+|hypothetical-protein
MPRGDKSAYSDKQKRQAEHIEESERERGASEGTAERIAWATVNKQDGGGKRSGSARKGTKKAASKKAAKKAPARKSGTKKATTKATAAKKAPAKKTTARKAAAKKAPARKTATKKTAKKTAAKKAGTAASRSAAAKKAAKTRAAKKTVRKVAAKKAARTRARG
>NZ_CP040430.1|WP_005410630.1|3479378_3481469_+|catalase
MAASKPTGKRATTHAENHHRGNGDELHQQAGGSHPAMTTDQGIPVADNQNSLRQGPRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFELTRSLKAHTRARILTEVGVKTPVFTRFSTVAGGAGSVDTPRDVRGFAVKFYTREGNWDLVGNNIPVFFIQDAMKFPDLVHAVKMEPDRAFPQAASAHDTFWDFISLMPESMHMIMWAMSDRAIPRSLRMIEGFGVHSFRLLNEAGESTFVKFHWRPKLGIQSTVWDEALKLQSADNDFHRRDLFEAIQRGDFPEWELAVQLFTEEDADAFPFDHLDPTKIIPESLVPLQVIGRMVLDRWPDNFFAETEQVAFCPANVPPGIDFSNDPLLQGRLFSYLDTQLLRLGGPNFHQIPVNAPKCPFANHQRDGHMQMQVPKGRVAYDPSSLQEDTPRETPAGFRSHASADDGRKGRTRAESFADHYSQARMFFRSLEKPEQAHLASALVFELSKVETLKVRVRTVGHLRNIDDSLAQRVADGLALPALPDPAPTATPVRDMPPAPEVRVIGRNKPTLQGRCIGILFDEGSDARIIASLSKAARKAGADVKLVAPRVGGATLSDGALQAADGQLAGTPSAVFDAVAVVLSPEAAKALSKESAAIEFVSQAWAHLKAIASDAGGQTLLKAARVGNDAGIVEAEDAKAFLAAAATRQWAREPKLRLLA
>NZ_CP040430.1|WP_005410640.1|3490190_3490376_-|DUF2065-family-protein
MKDLFAAVCLVAVLEGLFLFVAPFAWKRMAERLLDLPSPALRSFGGLVLLAGLSLLWWARH
>NZ_CP040430.1|WP_005414169.1|3490443_3491307_-|protease-modulator-HflC
MKSPIWIAVIVAVVLGLLGSVYVVREDQTAMVLNLGKVVRSDIKPGLHFKVPVVETVKVFDRRFQVLDTAPARYFTAEQKDVSVDFFAIGYISNVGDYFRATGGDPRIANARLAPIITDSLRNQINSRTLQQLVSGDRSELIAEQLKGINEAVAGLGMQMIDLRIKQVDLPTDSQVINDVYERMRAQRKQEAAKLRAEGEEQSLTIRAQADRDSTVLIAEAERDAQRLRGEGDAEAARIYGKAGSADPSFYAFYRSLEAYRGSMTDGNGVIVLDKNDPFLQYLKNDR
>NZ_CP040430.1|WP_005410642.1|3491303_3492437_-|FtsH-protease-activity-modulator-HflK
MAWNTPGGNKGGQGPEDNRRGPFGSRGGGNGGGWGGLPGPLKDLFDGGIVRWVVAAVVLLVLFSSFQLIGEQQRGVVLRFGQFSRILQPGPNFKLPWPIESVTKVNATEIKTFSIQVPVLTRDENIVNVSLNVQYRIDDPQQYLFGTVDANQVLEQSAQSAVREEVGRADLNAVLNNRGPLAVAAEERLQALLKAFKTGLTVTGLTLQDARPPEEVKPAFDEVNGAQQVKERLINEAQAYAAKVVPEARGQASRARTTAEGYKQAVVSKAEGDAQRFSLLQAQYKDAPEVTRKRLWLETVQQVLSENRKVIGGDGRQLIYVPMTGDTRPSTSAPAAVANPDVVMPSLPGAAAEASRDPGRPVGRPTGRPSGREEGSR
>NZ_CP040430.1|WP_043034522.1|3492590_3493586_+|YhdH/YhfP-family-quinone-oxidoreductase
MAPTTPFTAFRIENDDAGYRSGLVRLGVDDLNPGQVLIRAHWSSVNYKDALAGTGKGKILRRFPLVGGIDVAGTVVASTDPDWREGDAVLATGCGLSETRDGGYSQYVRLESRAVIAQPAGLTPREAMVLGTAGFTAALALLRMQDNRQTPELGPLAVTGASGGVGALALSIFSRAGYSVHAVSGKPDQAGFLRSIGATEVLPRDALADTGALQSGRFGGGLDNAGGAMLASLLAQTVPYGSVVSAGLAASPTLDMTVMPFILRGVSLLGVSSANAPRGLREEVWSRLGSDWKPQHLDRICTAEVGLDGLPAVFERMLAGGSLGRTVVRID
>NZ_CP040430.1|WP_005410644.1|3493674_3494046_+|response-regulator
MARILIVDDSPSQLLGIQRIVEKLGHQILTATDGAAGVETAKAELPDLVLMDVVMPNLNGFQATRTLARDEATRHIPVILVTTKDQDTDRMWGMRQGAKAYITKPFSEDELSEVLERVFAGQG
>NZ_CP040430.1|WP_005410645.1|3494134_3495028_-|DnaJ-domain-containing-protein
MEFKDYYATLGVEPSAGEAEIKTAYRRLARKYHPDVSKEAGAEDKFKAVNEAYEALRDPEKRAAYDQLRAQGYRPGEEFNVPPNYGGAGGFNFEEVFGGGGPNGGFSDFFESLFARQRGGAGAGAGPGFSSQGHAPNRDTRAKLSVPLEAAYSGDSLRITVNGKQLDVRVPKGIRPGQVIRLAGQGNHGGNLLLEVEYAAHPQFEVDGRNILYTLPLTPWQAALGTSISVPTLGGAVELKIPADSDAGRKLRLRGRGLPGNPDGDQIVEIEIVAPAATDEAQKKAYRNLAKAFGETI
>NZ_CP040430.1|WP_005410646.1|3495288_3495771_+|peroxiredoxin
MTIHVGDRIPEVTLKRIREGIETLDTHSLFDARKVVLFAVPGAFTPTCSARHLPGYVEKFEAFRQRGIDVYCMAVNDPFVMKAWAADQSVPDGLLMLSDGNAELTRALGLELDASASGMGIRSRRFALYVDDGVVREAWVEQPGQFEVSSAEYVLEHLPT
>NZ_CP040430.1|WP_005410647.1|3495800_3496376_+|bacterioferritin
MSSKPAKASKPAANVPGISDRATLRERARRNLEDGAITDSYSADREVVIKLLNDALATEYVCVLRYYRHYFMAKGMLADAVKAEFLEHAQQEQAHAGKLAERIVQLGGEPDLNPDTLTARSHAEYKEGSDLRDMVRENLVAERIAIDSYREMINFIGDRDTTTKRILEEILAQEEEHADEFADLLDGWIGE
>NZ_CP040430.1|WP_024956936.1|3496450_3498832_-|penicillin-binding-protein-1C
MKNTMTTRLAALRRRLQPLWPWLRWGMAATLALLLVLDFVFPPPLPKQRDTSTLVVAADGTPLRAFADAEGVWRYPASTDSVSPLYLQALLTYEDRWFWRHPGINPLAILRASGQLLRGGRIVSGGSTLTMQVARILDPHTRTPWGKLKQMLRAVQLEVHLSKQQILALYLERAPYGGTIEGVEAASWAYLGKPAAQLSHAEAALLAVLPQAPSRLRPDRHPEAAQKARDKVLSRMAELGAWTAEEVEDARIENVVARSLRPPLHAALLAQRLHSAHPGQARIQSSIDIGLQRTLEERVASYFSTLPERTSAALLVVDNQTLQARAYVGTLAFGDRQRLGHVDMVQAWRSPGSTLKPFLYAMALDDGLIHSESLLVDAPQSFGSYRPGNFDMAFNGPIGASSALRLSLNVPSVDLLQRVGPARFAARLSHSGIQLRFPPGSTPNLSLILGGTGARLEDLVGAFAALNRNGIAGRVRYTDDEPMIERRLASPGASWIVREMLESNPRPGYSVGTFDVGGRPRVAWKTGTSYGYRDAWAIGSTRHYTVGVWVGRPDGTPLPGQYGAVTALPLMFEVVDSLPRQRGDSAAAPMPASVSQEDICWPTGERAEGLPAALCQRLMPAYLLEGAAPPTFPEREARRWQPGRQRYLADARTGLRVSADCRLPHEEVAREIARWPALLSPWLSKATREASQLPALSPDCRDDGREASVALHIDGLNDGATLARAPNSEHGVRLQLRALGSEQAVDWLLDGRWIAQTRGAQLMQREFAEPGAHTLTALAADGAWTQVRFNVLR
>NZ_CP040430.1|WP_154267969.1|3498896_3503804_-|alpha-2-macroglobulin-family-protein
MSGPARRKRWGWAAAVLAGGLLLGLAGCRNDSGQLPKASGEAITTKAEQVKEFTLLRAYPDQKNDGLSLALEFSRPLVGTQDFDKLVRFEEKVGTDDSSWTLSDDGLTLRYPFVEAGKEFSLVVSPDLLAADGSRLGKELKQKVFSGELKPVVGFASQGSVLPAKDSRGLPVVSVNVPEVDVEFLRVREKDLPTFFSQYQRGGRRGSWELSSDYERSPINKLAEPVYVNRFILGGKKNERVLTYLPTQDIKELQEPGLYFALLKRTGDYEGEFDTAFFSVSDIGLHTRAYKDKLFVHTAGLKDGAPLKGIDLRVLDAKGEVVLKGSTDGNGNALLNYTLDATHVLVASTGKDTSFLPFNQPALDLSEFAVAGRDNAWFDVYAWSGRDLYRPGETVRLSALLRDNDGKPVKAQPVFLRLKQPDGKTFRETRLQPGDQGYINFEQVIPAEAPTGRWQVEFRTDPASKEAIQGMTLRIEEFLPERMKLDLDSAQKTLKPGEDLRLQANGAYLYGAPADGNRFTARMAVAAEQKPVEGLPGYFFGDPTLQLPREAKDVIDTTLPGNGQLREDVALPEEAAKAKAPIAVVLSGSLYETGGRTVTRTLKRVMWPANALVGVRPLFNPEDGADSNGNARFELMRVDAAGTPQPAKGLKITLVRELRDYHWTFNDNRWDYDFTRRFENKETRTVDAGSSAVAFDFPVEWGEYRVDVFDPSTGLTSRYPFRAGWSWGDDNRGLDARPDKIKLGLDKTGYKAGDTLEVTVTPPHAGKGILMVETDRMLYVQDIDAKPGSTFKIPVTADWERHDVYITALVFRGGSAPSKITPARAVGVVHVPMDRKGRTVAVGLAAPKQMRPEQDLPVTVSAPQLAGKMAHVTVSAVDVGILNITRFPVPDAGAHFFAQRRLGIDAYDIYSRVIESFDGGAGKLKFGGDMALQALPQAKRPTARVQTVDLFSGPVQLDAKGIARIRLKVPDFNGTLRVSALVYSDDQYGKRDVETVVRAPILAEASMPRVLAPGDRSTVTLDVQNFTGKPGQFNVKVESEGPLNLGEGSRSVQLNADAKTTLSFPLSAREGHSVAKVRVRVDGNGFKADRRYDLPVRAAWPQVLRSQVRTLDPLAAVSLDNSLTDGLMAESVNARLLVSPLPPIPFASALQGALNYPYGCAEQTTSKGYAALILDQATSSMLGADGLDAKTRRERMEGAFGRLASMQVANGNFSMWGDDGYVNPWLTPYITEFLLDAKDAGFAVPDNVLQKALNRLSEDLLSGGNQFYGQDDREKLKFANQAYSGYVLARVNRAPLGTLRTLYDNERSKAVGGLSLVHLGVALSLQGDAKRGQAALAAAFAKSSSERPSYFGDYGSAIRDDALMIALTHENKLAKPAWDARAVDLGRGLDARRNAGWMWLSTQEQVAIARLGKALAANQKALVAGELVIGGNTEAIGERKLFGRNFSANELASGVRFTPQGQPPMFVSIDVAGIPRSAPAPDNSVLGVERSYYGTDGKPWSPRPLKEGEALIVRVTVTADTTMPDALLTDLLPAGLEIENFNLGDAKQWADVVVDGIAISDRGEAADTKHEEFRDDRYVAALKLSRGSKANVFYLVRAVTPGTYSVPPPLVEDMYRPQLRGVGRSNPTTITVVQP

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Crispr_ID: NZ_CP040430_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_9

3616095-3616173

Orphan

Consensus_repeat	Method
TGCCTGGCGGGTCAGGGAGTGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040430_9

>merge|NZ_CP040430|9|3616095-3616173|CRISPRCasFinder
TGCCTGGCGGGTCAGGGAGTGCGATCCAACGGTTCGCACCCACCCGAGTCAGACCTGCCCGGCGGGTCAGGGAGTGCGA

>NZ_CP040430|9|8|3616095-3616173|CRISPRCasFinder
TGCCTGGCGGGTCAGGGAGTGCGA	TCCAACGGTTCGCACCCACCCGAGTCAGACC
TGCCCGGCGGGTCAGGGAGTGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_049449190.1\|3617015_3617717_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275145
NZ_CP040430.1\|WP_088430087.1\|3614459_3614798_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_012481069.1\|3623152_3623584_-\|tol-pal-system-associated-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|274304
NZ_CP040430.1\|WP_088430080.1\|3611062_3611830_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP040430.1\|WP_088430076.1\|3607106_3608915_+\|copper-resistance-system-multicopper-oxidase	unknown	unknown	gnl\|CDD\|273649
NZ_CP040430.1\|WP_005410737.1\|3610018_3610531_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP040430.1\|WP_005410749.1\|3619261_3620581_-\|Tol-Pal-system-beta-propeller-repeat-protein-TolB	unknown	unknown	gnl\|CDD\|179892
NZ_CP040430.1\|WP_005410745.1\|3616271_3616937_-\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|284031
NZ_CP040430.1\|WP_005410748.1\|3618678_3619197_-\|peptidoglycan-associated-lipoprotein-Pal	unknown	unknown	gnl\|CDD\|274307
NZ_CP040430.1\|WP_088430078.1\|3608911_3609937_+\|copper-resistance-protein-B	unknown	unknown	gnl\|CDD\|377498
NZ_CP040430.1\|WP_005410752.1\|3622362_3623142_-\|protein-TolQ	unknown	unknown	gnl\|CDD\|131843
NZ_CP040430.1\|WP_005414274.1\|3617856_3618675_-\|tol-pal-system-protein-YbgF	unknown	unknown	gnl\|CDD\|224643
NZ_CP040430.1\|WP_088430089.1\|3615127_3616084_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370782
NZ_CP040430.1\|WP_005410750.1\|3620864_3621920_-\|cell-envelope-integrity-protein-TolA	unknown	unknown	gnl\|CDD\|274303
NZ_CP040430.1\|WP_005414268.1\|3611922_3612345_+\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NZ_CP040430.1\|WP_088430084.1\|3612421_3613360_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225375
NZ_CP040430.1\|WP_005410754.1\|3623573_3624614_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_CP040430.1\|WP_088430091.1\|3621909_3622338_-\|protein-TolR	unknown	unknown	gnl\|CDD\|274306
NZ_CP040430.1\|WP_088430086.1\|3613442_3614285_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225375
NZ_CP040430.1\|WP_005410738.1\|3610604_3610913_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226331

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_049449190.1\|3617015_3617717_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275145	TIGR04349, Radical_SAM_domain_protein, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, gammaproteobacterial type. Members of this radical SAM domain protein family appear to be a form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in preQ0 operons species that lack members of related protein family TIGR03365.	2.27897e-154
NZ_CP040430.1\|WP_005410737.1\|3610018_3610531_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.77795e-10
NZ_CP040430.1\|WP_012481069.1\|3623152_3623584_-\|tol-pal-system-associated-acyl-CoA-thioesterase	gnl\|CDD\|274304	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import of certain organics but also in the maintenance of outer membrane integrity (by an unknown mechanism).	2.2993e-63
NZ_CP040430.1\|WP_088430080.1\|3611062_3611830_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	0.00932976
NZ_CP040430.1\|WP_088430076.1\|3607106_3608915_+\|copper-resistance-system-multicopper-oxidase	gnl\|CDD\|273649	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP040430.1\|WP_088430078.1\|3608911_3609937_+\|copper-resistance-protein-B	gnl\|CDD\|377498	pfam05275, CopB, Copper resistance protein B precursor (CopB). This family consists of several bacterial copper resistance proteins. Copper is essential and serves as cofactor for more than 30 enzymes yet a surplus of copper is toxic and leads to radical formation and oxidation of biomolecules. Therefore, copper homeostasis is a key requisite for every organism. CopB serves to extrude copper when it approaches toxic levels.	3.59469e-113
NZ_CP040430.1\|WP_005410749.1\|3619261_3620581_-\|Tol-Pal-system-beta-propeller-repeat-protein-TolB	gnl\|CDD\|179892	PRK04922, tolB, Tol-Pal system beta propeller repeat protein TolB.	0
NZ_CP040430.1\|WP_005410745.1\|3616271_3616937_-\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|284031	pfam06508, QueC, Queuosine biosynthesis protein QueC. This family of proteins participate in the biosynthesis of 7-carboxy-7-deazaguanine. They catalyze the conversion of 7-deaza-7-carboxyguanine to preQ0.	2.41995e-110
NZ_CP040430.1\|WP_005410748.1\|3618678_3619197_-\|peptidoglycan-associated-lipoprotein-Pal	gnl\|CDD\|274307	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.	2.43118e-59
NZ_CP040430.1\|WP_005410752.1\|3622362_3623142_-\|protein-TolQ	gnl\|CDD\|131843	TIGR02796, Protein_TolQ, TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	1.12782e-104
NZ_CP040430.1\|WP_005414274.1\|3617856_3618675_-\|tol-pal-system-protein-YbgF	gnl\|CDD\|224643	COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown].	1.1057e-50
NZ_CP040430.1\|WP_088430089.1\|3615127_3616084_+\|hypothetical-protein	gnl\|CDD\|370782	pfam10026, DUF2268, Predicted Zn-dependent protease (DUF2268). This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.	0.000922401
NZ_CP040430.1\|WP_005410750.1\|3620864_3621920_-\|cell-envelope-integrity-protein-TolA	gnl\|CDD\|274303	TIGR02794, Protein_TolA, TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	5.48043e-14
NZ_CP040430.1\|WP_005414268.1\|3611922_3612345_+\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	3.73214e-19
NZ_CP040430.1\|WP_088430084.1\|3612421_3613360_-\|alpha/beta-hydrolase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	1.84325e-33
NZ_CP040430.1\|WP_005410754.1\|3623573_3624614_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_CP040430.1\|WP_088430091.1\|3621909_3622338_-\|protein-TolR	gnl\|CDD\|274306	TIGR02801, Protein_TolR, TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	1.4933e-48
NZ_CP040430.1\|WP_088430086.1\|3613442_3614285_-\|alpha/beta-hydrolase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	9.55101e-39
NZ_CP040430.1\|WP_005410738.1\|3610604_3610913_-\|hypothetical-protein	gnl\|CDD\|226331	COG3809, COG3809, Uncharacterized protein conserved in bacteria [Function unknown].	9.00743e-27

>NZ_CP040430.1|WP_088430089.1|3615127_3616084_+|hypothetical-protein
MRLPFCLIAPLLLPCAALAAPSQVVTDDIGRFWATYDAVRAEPDVERQVALVQERYIDPGSPGLHALMQVRNYTAREYAEAMRAWPRFWTSVRPLTANAQQASATLERDLAAFRTLYPALRPATITYAVGVLRTGGTTLGDKVLIGAEMALGDERVDVSELPEPMRSRLRIFYDSRPGANNAQNNLHEYVHTQQRETTGSLAQYAVREGVAEYVAERLSGRRPALPLYSYGPAHEAEIRARFVAEMDGGDLDNWLYNSAGNPFGVSDVGYYAGYRIAQEYMRQQKDEKAGIARMIELDYADPGAVRMFIEASGWLRQR
>NZ_CP040430.1|WP_088430087.1|3614459_3614798_+|hypothetical-protein
MLSVLIATTLGAASPQSSSTPPASAAYADCLLAHLQPGLSDHAIPLLQQACVAKYPESYVAYSELERRISAQRRADFDAAQAEAVRSANAAATAAQQAADAAAAKAKGVRAK
>NZ_CP040430.1|WP_088430086.1|3613442_3614285_-|alpha/beta-hydrolase
MRLIVLSLLLSVVSAAPLMAAESASPAAATPLVIGETFTIESKVLGETRRINVYRPQPWGLDPKAPLPVLYMPDGGIGEDFLHVAGLVQVLSGNGSMRPFLLVGIENTERRRDMTGPSKDPQDQKIAPRIGGSAAYRTFLRDELMPQVRQRYPTTEERALIGESLAGLFVVETLLQEPTLFNSYIALDPSLWWNRGAMLAGAAKQLPAVTRAQPRVFLASSGQPELAASAAQLATLLQQASPSPLVKYLPLPEETHATIYHPAALQALRTLFPAPPPASP
>NZ_CP040430.1|WP_088430084.1|3612421_3613360_-|alpha/beta-hydrolase
MQRVRGWSVAACLAMSGCAMSVAPPAVQSEAKDSATTATPGVVLPDTEALRVHDPVGRDYPVWVALPADYAAHPEKHYPVLYVTDALYSFPLVRSVRNMVGQKGVNIEDFILVGLPPQEGLTSKQSRSRDYTPSDPARTDPRDYSDDVSYGGAAHYRDFLAGQVLTMIDARYRTDPARRAYAGHSYGGLFGAYVLTTRPDMFRTYILSSPSLWFDDHRVPRMQAEAKAPAQPTTVVLSVGSFETVKPEPRYFTRNDMLRHNAEFAEQLRSSGRSLKVENMVIDDEDHFTVYPDMITRALLKVFPGTGPYSSG
>NZ_CP040430.1|WP_005414268.1|3611922_3612345_+|response-regulator
MLLSKRHVEPRVLLIEDAEETRELSRLALESQACHVVGVSSAEAALGLLAAGERFDLLFTDVNLGAISGIEAANRVRGLYPQLPILVTSGMDQHQVLPQLRDGIHFLPKPYNMSELLDAIRLCFRHADVGVLTGPDAQAA
>NZ_CP040430.1|WP_088430080.1|3611062_3611830_+|CPBP-family-intramembrane-metalloprotease
MTVLSRLPTTARMLLVLLGVGLGLNLRDIAAAIGTPIPALPFPYGGSLLDNALAVLVALLLAALLRPRDMGLMASLGLRGNGWSGPMWVLLASLPCWLGLALLGAPNRALTALDATMLAVLFPLAEEVLFRGLGFVLLVKIVRGPWPWFALPQALLFGMVHWLGFGGFDGGGIALFVGAVIAVGGFIFAWLDHLDGNTLWCGLVLHVSMNLAWNVFSLDDALALGWQATSLRIGTALLAVAVLAWHVRLRRQRGL
>NZ_CP040430.1|WP_005410738.1|3610604_3610913_-|hypothetical-protein
MLCPVCKTQTLQMAERHGIEIDYCPSCRGVWLDRGELDKIIERAGAGAAVPPPAPVQAQPASAPPPVMHRDTRHLGQRYEDNRGHGYKKKKKDSFLSELFDF
>NZ_CP040430.1|WP_005410737.1|3610018_3610531_+|GNAT-family-N-acetyltransferase
MSLQIRRATLADVDALSAIAIATYNETWGDSYPPQELHDFLQAHYSSEPQRIELSDPRSAIWLLLDGDAVVGYLAAGANTLPHTDACEGDIELKRFYILAAHQNGGHGARMMDAFMAWLDQPQRRTLWVGVWEENFGAQRFYARYGFSKVGEYDFIVGDTHDREFILRRP
>NZ_CP040430.1|WP_088430078.1|3608911_3609937_+|copper-resistance-protein-B
MSRSLLSPSLLALGLAAALPVFAQSHAGHDMGAMNAPAKSAKTPAEPVDHSKMDHSEMGMGAADQAGMDHSTMDHSKMDHGAMQPSAMDHSQMDHGAMGHGTPAPTEPREPIPVPTDANRAAAFPPIAHGAMEHAPEINSLLLIDRLEHWDGKSSNGQAWEATGWVGGNINRLWLRTDGERSRGRTESSSLEALYGRSVSPWWDVLVGVRQDFRPSDSRTWAAIGIQGLAPYKFESSATLYMGSGGQVLAKAEVEYDVLLTNRLILQPLLEATVAAKDEQEYGIGRGLNKVEAGLRLRYEFSRRFAPYIGISHERSFGDTADYAGDHARDTRWVAGVRMWF
>NZ_CP040430.1|WP_088430076.1|3607106_3608915_+|copper-resistance-system-multicopper-oxidase
MNTRNPPGPGAVPMPSRRLFVQGLAAGGVVAGIAAVGVPQRALAAATAAPRLAGAPAVLSDTRIELAIGESLANFTGRTRPAITVNGSLPAPILRWREGQTVDLFVRNTLERHPTSIHWHGILLPANMDGVPGLSFNGIGPGETYHYHFQLKQSGTYWYHSHSMFQEQAGLYGALIIDPAEPAPYHHDREHVIMLSDWTDMDPGALFRRMKKLAEHDNYYKRTLPDFLRDAKRDGWSAALSDRGMWGRMRMTPTDISDINAHTYTYLMNGTAPAGNWTGLFRSGEKVLLRFINGGSMTYFDVRIPGLKMTVVAADGQYIHPVSIDEFRIAPAETYDVLVEPTGQDAFTIFCQDMGRTGYAAGTLAVRHGLQAPIPARDPRPLLTMSDMGHDMGSSGHGGHDMAAMKGTEGSCGASMGHGAHGGGAASKVPKHPASERNNPLVDMQSSATEPKLDDPGIGLRDNGRQVLTYGAMRSLFEDPDGREPSREIELHLTGHMEKFSWSFDGVPFASAEPLRLNYGERMRIVLVNDTMMQHPIHLHGVWSDLEDAQGEFQVRKHTIDMPPGTRRSYRVRADALGRWAYHCHLLYHMEAGMMREVRIEE
>NZ_CP040430.1|WP_005410745.1|3616271_3616937_-|7-cyano-7-deazaguanine-synthase-QueC
MKKAVVLLSGGMDSAAVIAMAQEQGFAVHALSVRYGQRHTSELDAAARVAKAQGVVAHKTVDVDLRSIGGSALTDDIDVPEAGGAGIPVTYVPARNTIMLSLALGWAEVLGANDIFCGVNAVDYSGYPDCRPEFVAAFQALANLATKSGVEGAGIKVHAPLQFLSKGQIVSEGVRLGVDFGLTVSCYNADANGAACGHCDACRLRAQGFAEAGVPDPTLYA
>NZ_CP040430.1|WP_049449190.1|3617015_3617717_-|7-carboxy-7-deazaguanine-synthase-QueE
MTAVTPSNAVATPSDIVQSPLPRLKITEIFTSLQGEADTAGWPTVFVRLTGCPLRCQYCDTAYAFHGGTWWDIDDIVAEVLAQGVRHVCVTGGEPLAQKRCLVLLQKLCDAGMDVSLETSGALDVSAVDPRVSRVVDIKTPGSAEVARNRWENLPLLTARDQIKFVICSRGDYDWAKALVAEHELVKRCTVFFSPSKGEVTARQLADWIVEDRLPVRFQMQLHKILWNDEPGR
>NZ_CP040430.1|WP_005414274.1|3617856_3618675_-|tol-pal-system-protein-YbgF
MRIGIKLMLVVAAALVAAAPAHAQRQSLADRVGALEQQMYNNSANQDLLNQINQLRQQVTSLQASIEQLQHDNAQLKQSAQDQYLDLDSRLNRLEGGNAAPALPPVPASAPKAAPAPAKPAAAATSERPPSVHGDAGSLAATGDERTSYNVAFDSLKAGKYDDSAQLFLSFLQLYPNGVYAPNALYWLGESYYATRNFPMAETQFRELLARYPTHDKAAGGLLKVGLSQYGEGKVDQAQQTLESVVAQYPGSDAARTAQDRLQSIRLGKQIR
>NZ_CP040430.1|WP_005410748.1|3618678_3619197_-|peptidoglycan-associated-lipoprotein-Pal
MNKSTRVLLVSLLSVAVLAGCSKKVKEEPAAPVDTGTSTTTPTGPSTSGLYGPGDLDTDACLRQRVVYFDLDKEDVKPEFQAIMACHAKYLRDRPSSRITLQGHTDERGSRAYNQALGERRGNGVNSALQANGGSASQLTVVSYGEERPVCTESNESCWSQNRRVEIVYTAQ
>NZ_CP040430.1|WP_005410749.1|3619261_3620581_-|Tol-Pal-system-beta-propeller-repeat-protein-TolB
MKKMPRWLAVFAALLLPFAAVAQQKGLDIDIIGGNASALPITIVPMPYQGSSAAPQTDVAGVVRADLERSGQFRTLPEAQIVEKPVRGGDIQFATWRALKQNYIVVGRVLDAGAGAYRVEYELFDVPKGERLLGLAMTARGNAMRDVAHQMADAIYEKITGVRGAFWTRIAYVTASGKGDAMRYALMVADSDGFNPQTIVRSAEPLLSPSWSPDGSKLAYVSFERGNSAIYIQNIGTGARELVTSFRGINSAPAFSPDGRKLALTLSRSGNPEIYVMDLGSKQLTQLTNHFAIDTEPTWAPDGSAVYFTSDRGGRPQVYKVGAGGGSAERVTFQGNYNAKPSVSYDGKKIAVAQGSGNSYKIAVMDSSLGSPRWSTLSPGSLDESPSFAPNASMVLYAAREGGRGVLYAVSADARVRQRLVLADGDVREPAWSPYRTQR
>NZ_CP040430.1|WP_005410750.1|3620864_3621920_-|cell-envelope-integrity-protein-TolA
MHADALPPPHQREPGWGLPLALALLVHLLVALVFIVAWFWSPERNTDAAAGDPSVEASLALSASEASAARQALRQSEKLEDLPPPVAEPIPVPEDTIPPPQPIPEPRPQDAPTPQQQQAQERVAQPDTKDQEAVSALAISQEKAKQEQEAKRRQEQIDLTERKRQEEAEQKLRLAKQQEADEKKKQAEQERVAADKAEAEKQKKIAEIRARREQAEKEAKLAEQKLRQVAAARNAAGSAAAGSSGASQPAAGGGGNSDDLSAKYAAAIQAKVLSQWVRPDTVPLGQRCQITITQIPGGTVMQAKVSPNCPYDEAGKRSIEAAVLNAQPLPYRGFESVFARTLNFTFTAQDR
>NZ_CP040430.1|WP_088430091.1|3621909_3622338_-|protein-TolR
MSAAIGRRKRRKLKSEINVVPYIDVMLVLLIIFMVTAPLLTLSFDVDLPQSNAKALESKQDPVIVSVRQDGQLSLKLPDAKEPTAVSAEELEGRLAGIAAQDKGVRVIVAADRAVAYEKVIAAMDVIKRARVDKVGLATDAR
>NZ_CP040430.1|WP_005410752.1|3622362_3623142_-|protein-TolQ
MIATLLALQATVTEALPADVSNAATQTLAQATTGGGINYLELMAKASLPVKIIVLLLLVGSFVSWVIIFRKARVFKQATREADEFENRFWSGADLGKLYSAATDRSRSVTGLEAIFEAGFREYTRLRDKRRLDGRAQLEGAQRAMRTTYTREVDQLERNLELLANIGSTAPYVGLVGTVFGIMVTMHDMISSGAQAGIAAVAPGISEALFATAIGLFVAIPAVWAYNRFTTRVERMSVRFETFAEEFSSILQRQSAGDE
>NZ_CP040430.1|WP_012481069.1|3623152_3623584_-|tol-pal-system-associated-acyl-CoA-thioesterase
MSVEPLFSWPTRIYWEDTDAGGVVYHARYVAFMERARTEWMRSLGYGQERMRAEHGMIFAVRSMQMDFIRPARLDDTLQVSARLVQLKKASMVFDQQILRDGELLLSAQVRIAALDAASFRPRGMDEAVLAVLQPHLHPESEH
>NZ_CP040430.1|WP_005410754.1|3623573_3624614_-|Holliday-junction-branch-migration-DNA-helicase-RuvB
MTDDRIIGAGATREDDAADASIRPKRLADYLGQVPVREQMEIYIQAAKGRGDALDHVLIFGPPGLGKTTLSHVIANELGVALRVTSGPVIEKAGDLAALLTNLQPHDVLFIDEIHRLSPVVEEVLYPAMEDFQIDIMIGEGPAARSIKIDLPPFTLIGATTRAGLLTAPLRDRFGIVQRLEFYSVEELTRIVRRSASILGIDCTADGAGEIARRARGTPRIANRLLRRVRDYAQVKAGGHIDEPVAQAAMKMLKVDPEGFDELDRRLLKTMVDYFDGGPVGIESLAAALSEERGTLEDVVEPYLIQQGFLVRTARGRMATHKAYRHMGLKPKNPPQDLFAEVPDVG

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Crispr_ID: NZ_CP040430_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_10

3756281-3756444

Orphan

Consensus_repeat	Method
CACCTACCAAAGCGTTGGTGGGTGCCAACCTTGGTTGGCACC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040430_10

>merge|NZ_CP040430|10|3756281-3756444|PILER-CR
CACCTACCAAAGCGTCGGTGGGTGCCAACCTTGGTTGGCACCGATGCATCCGCCGGGCACAGCCCCGCGCTGCTCTGGTAGATGCCAACCTTGGTTGGCGCCCCGTGCCGACCAAGGTCGGCACCTGCCAAAGCGTTGGTGGGTGCCAACCGTTGGTTGGCATC

>NZ_CP040430|10|2|3756281-3756444|PILER-CR
CACCTACCAAAGCGTCGGTGGGTGCCAACCTTGGTTGGCACCG	ATGCATCCGCCGGGCACAGCCCCGCGCTGCTCT
GGTAGATGCCAACCTTGGTTGGCGCCCCGTGCCGACCAAGGTC	GGCACCTGCCAAAGCGTTG
GTGGGTGCCAACCGTTGGTTGGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_006466035.1\|3756516_3757161_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_062605738.1\|3745709_3746159_-\|DUF4381-family-protein	unknown	unknown	gnl\|CDD\|379552
NZ_CP040430.1\|WP_088431148.1\|3748317_3750285_-\|type-IV-pilus-secretin-PilQ-family-protein	unknown	unknown	gnl\|CDD\|274173
NZ_CP040430.1\|WP_044571441.1\|3750306_3750810_-\|pilus-assembly-protein-PilP	unknown	unknown	gnl\|CDD\|377322
NZ_CP040430.1\|WP_049396146.1\|3751489_3752362_-\|PilN-domain-containing-protein	unknown	unknown	gnl\|CDD\|225707
NZ_CP040430.1\|WP_005410861.1\|3753639_3756063_+\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|227342
NZ_CP040430.1\|WP_154267979.1\|3758150_3763214_-\|autotransporter	unknown	unknown	gnl\|CDD\|240612
NZ_CP040430.1\|WP_005414346.1\|3746155_3747085_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP040430.1\|WP_088431158.1\|3768939_3769947_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP040430.1\|WP_088431154.1\|3764001_3765138_-\|pilin-protein	unknown	unknown	gnl\|CDD\|284778
NZ_CP040430.1\|WP_005410868.1\|3767924_3768422_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367947
NZ_CP040430.1\|WP_005410870.1\|3770384_3771662_-\|citrate-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP040430.1\|WP_088431160.1\|3757337_3758081_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_154267980.1\|3765134_3767864_-\|usher-protein	unknown	unknown	gnl\|CDD\|185210
NZ_CP040430.1\|WP_005410851.1\|3744708_3745713_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238744
NZ_CP040430.1\|WP_005410860.1\|3752361_3753420_-\|pilus-assembly-protein-PilM	unknown	unknown	gnl\|CDD\|378558
NZ_CP040430.1\|WP_088431152.1\|3763275_3763983_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|237939
NZ_CP040430.1\|WP_005410871.1\|3771958_3772201_-\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NZ_CP040430.1\|WP_005410854.1\|3747093_3748119_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP040430.1\|WP_005410857.1\|3750836_3751493_-\|type-4a-pilus-biogenesis-protein-PilO	unknown	unknown	gnl\|CDD\|225708

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_062605738.1\|3745709_3746159_-\|DUF4381-family-protein	gnl\|CDD\|379552	pfam14316, DUF4381, Domain of unknown function (DUF4381). This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 158 and 180 amino acids in length.	2.89748e-20
NZ_CP040430.1\|WP_088431148.1\|3748317_3750285_-\|type-IV-pilus-secretin-PilQ-family-protein	gnl\|CDD\|274173	TIGR02515, Putative_DNA_transport_protein_HofQ, type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures].	0
NZ_CP040430.1\|WP_044571441.1\|3750306_3750810_-\|pilus-assembly-protein-PilP	gnl\|CDD\|377322	pfam04351, PilP, Pilus assembly protein, PilP. The PilP family are periplasmic proteins involved in the biogenesis of type IV pili.	6.33226e-67
NZ_CP040430.1\|WP_049396146.1\|3751489_3752362_-\|PilN-domain-containing-protein	gnl\|CDD\|225707	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion].	6.66253e-50
NZ_CP040430.1\|WP_005410861.1\|3753639_3756063_+\|penicillin-binding-protein-1A	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP040430.1\|WP_154267979.1\|3758150_3763214_-\|autotransporter	gnl\|CDD\|240612	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll. This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.	3.86094e-18
NZ_CP040430.1\|WP_005414346.1\|3746155_3747085_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.6771e-23
NZ_CP040430.1\|WP_088431158.1\|3768939_3769947_-\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000717429
NZ_CP040430.1\|WP_005410868.1\|3767924_3768422_-\|hypothetical-protein	gnl\|CDD\|367947	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit. Fimbriae, also known as pili, form filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometres. They enable the cell to colonise host epithelia. This family constitutes the major subunits of CS1 like pili, including CS2 and CFA1 from Escherichia coli, and also the Cable type II pilin major subunit from Burkholderia cepacia. The major subunit of CS1 pili is called CooA. Periplasmic CooA is mostly complexed with the assembly protein CooB. In addition, a small pool of CooA multimers, and CooA-CooD complexes exists, but the functional significance is unknown. A member of this family has also been identified in Salmonella typhi and Salmonella enterica.	4.98509e-26
NZ_CP040430.1\|WP_005410870.1\|3770384_3771662_-\|citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP040430.1\|WP_088431154.1\|3764001_3765138_-\|pilin-protein	gnl\|CDD\|284778	pfam07434, CblD, CblD like pilus biogenesis initiator. This family consists of several minor pilin proteins including CblD from Burkholderia cepacia which is known to CblD be the initiator of pilus biogenesis. The family also contains a variety of Enterobacterial minor pilin proteins.	3.48474e-49
NZ_CP040430.1\|WP_154267980.1\|3765134_3767864_-\|usher-protein	gnl\|CDD\|185210	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional.	0
NZ_CP040430.1\|WP_005410851.1\|3744708_3745713_-\|VWA-domain-containing-protein	gnl\|CDD\|238744	cd01467, vWA_BatA_type, VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup are bacterial in origin. They are typified by the presence of a MIDAS motif.	3.45172e-76
NZ_CP040430.1\|WP_005410860.1\|3752361_3753420_-\|pilus-assembly-protein-PilM	gnl\|CDD\|378558	pfam11104, PilM_2, Type IV pilus assembly protein PilM;. The type IV pilus assembly protein PilM is required for competency and pilus biogenesis. It binds to PilN and ATP.	8.46083e-170
NZ_CP040430.1\|WP_088431152.1\|3763275_3763983_-\|pilus-assembly-protein	gnl\|CDD\|237939	PRK15308, PRK15308, fimbrial protein TcfA.	5.3376e-47
NZ_CP040430.1\|WP_005410871.1\|3771958_3772201_-\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	3.97798e-51
NZ_CP040430.1\|WP_005410854.1\|3747093_3748119_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.69901e-92
NZ_CP040430.1\|WP_005410857.1\|3750836_3751493_-\|type-4a-pilus-biogenesis-protein-PilO	gnl\|CDD\|225708	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion].	2.37744e-74

>NZ_CP040430.1|WP_005410861.1|3753639_3756063_+|penicillin-binding-protein-1A
MTRLRRWLRWIFLIVLVLALIGAAAVGGLYYAVSSKLPDVQTLRDVEMQEPMYVYAADGKLMAVFGETRRTPITMKDVPERLKQAFLATEDARFYEHGGVDYMGIGRAVWLLATTNDKRVPGGSTITQQVARQFFLSSEYSYTRKLAEILLARKIESELSKDEIFELYLNKSFFGNRAYGVAAAAEFYYGKKLNELDLDEMASLAGIPKFPSSGNPISNPERARQRRDNYVLQRMADLKFVSQAEADAAKAVPMHATAHEPPVQVDAPYVAELVRQEMIARFGGDVVNKGYHVTTTIDSTLQTAANQSVRDGLLLYDHRHGWHGVEKQVQVGAGEDAAALAEHLRGMYGQAGLLPAIVASTGADGSATVVLANRSEIVLPAGAAKWTNKTPGKLVQRGDIVRVRAGAKEGEWLLDQIPRGQSALVSLDAHNGALKALVGGFSFSGNKFNRATQARRQPGSSFKPFIYAAAFDKGYNPASIVLDAPVVFRDRRGKTWAPQNDGGGFRGPMRLREALVQSRNLVSVRLLDGMGVDYARKYISEFGFAESELPPNLSMSLGTASLTPLSVARGYAVFANGGSRVDTWLIDQVNDRDGNLVFKENPALACRDCAGSSDQPVNQVVDGFNFGAPAPKVDPAAAAKAEAKTETPAAPANPDARTAPRAIDARTAYQLVSMMRDVVQRGTGVQAKVLGREDVGGKTGSTNDHRDAWFSGFGGPYVTTVWVGRDDFRSLGYREYGGKAALPIWIDYMRTALKDTPIAQNEPPSGMVQATLNGATEWVKVEDMDRLTDYDLNLNTPQADAAAFDIF
>NZ_CP040430.1|WP_005410860.1|3752361_3753420_-|pilus-assembly-protein-PilM
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAAVAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELGGLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEEAGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLAQMTLGPKVNAHALAQDAPALMIATGLALRSFD
>NZ_CP040430.1|WP_049396146.1|3751489_3752362_-|PilN-domain-containing-protein
MARINLLPWRAERRKQRQREFYAMLGMAAIGGLLLSLLIWFYYDRQVSGQMDRNAYLEAEIEKVKEQNKEIDRLDAQKDRLLARKKVIEELQAKRSQMVHLFDALVRTIPDGVVLTALQQEGDMLTLEGRTQSNARVSAYMRNLETSGWMTNPELSIIQASAGDKTAAGPVSDIKALPYMFKVTVKLPAQSEETGTAGLNADGSVAAAPAATPAVAPLAAGPDAAAPAAAPAPAPAQPAAAPAAAPASAPAPAPAKPNQPAAPAPAARPEGSRLAQPPQASYAPLQGDRA
>NZ_CP040430.1|WP_005410857.1|3750836_3751493_-|type-4a-pilus-biogenesis-protein-PilO
MSQKIDLKNLDFNDIGNWPQKAKIVFCSLLALVIMFVAWMLLISGKRDELASLESKESDLRTEFSKQQERAVNLGPLKQQLAQMEQVLQQMLRQLPSKTEMPDLIIDISQTALSSGLTSQLFEPEQEQVKEFYAEKPIKLKMVGSYHQFGAFVSGVASLPRVVILTMHDINLKPADKAGGGSRAGALELSGTVKTYRYLDETEVQEQQKAEAGKEGSK
>NZ_CP040430.1|WP_044571441.1|3750306_3750810_-|pilus-assembly-protein-PilP
MAAAVLLLAACGRGVTSTPGDAPNLEKWVEGERARPAQPLEPLPVMQQFETFEYSAQGLRDPFTDAWTNPQGNGGLRPDPNRRKEPLEGFPLDALDMVGTIGTGGGTVALVMGPDKVTYRVRPGGYLGQSDGRVTAVFEDRVELIELVPDGAGGWLERPATLSLEDQ
>NZ_CP040430.1|WP_088431148.1|3748317_3750285_-|type-IV-pilus-secretin-PilQ-family-protein
MTFHQAKGLRPNRRSTLNRVSALGVALMLACAPALAAAPAEKPVGTTVAPAAAPAGLSVAKIDFKRGDDGAGRLIVQFDGQGAIPDLRTQGNSVVVDVGNARLPANLQKPLNVVDFATPVQRIDAKPSGTGTQLVLSTGGAVESLAYQSGNEYVVEISARQAPAAVGAVTAGSVTQAAKAVGQRGFTGKPVTFNFQDVPVRTVLQLIAEESNLNVVASDSVQGNVTLRLVNVPWDQALDIVLRAKGLDKRRDGSVIWVGPQAELAKFEQEKEDARIAIENREDLVTDYVQINYHSATQIFKALTEAKGIGGGGGGGAGGGGGGSSQEESGFLSGRGRIVADERTNTLMISDIPKKIARMRELINVIDRPVDQVLIESRIVIATDTFARELGARFGISGSRDNAYFSGNLEANEATRKSQVEANATNAKAYRDWLAGGSTGPAPVPVGSAITRGLNWAMPAASTNPAGSLALSILNAGYLLDVELSAMQEESRGEVISNPRVVTTNQREALIKQGKEIGYVTISAGAGGVATPNVQFKEVVLELKVTPTITNDNRVFLNMQVKKDEVDRLIQLEGYGTVPSINRREVNTAVLVEDGQTVVIGGVYEFTDRNSISKVPFLGDVPFLGNLFKKRGRSKDKAELLVFVTPKVLRVARQN
>NZ_CP040430.1|WP_005410854.1|3747093_3748119_-|MoxR-family-ATPase
MNLPPPMPETVSPPPAPAASRLHGAFNQLRDALSAEIVGQAALVERLLIALLADGHLLVEGAPGLAKTTAIRALASRLEADFARVQFTPDLLPADLTGTEIWRPQEGRFEFVPGPIFHPILLADEINRAPAKVQSALLEAMGERQVTVGRHTYALPPLFLVMATQNPIEQEGTFPLPEAQLDRFLMHVRIGYPDQAAESEILRLARERARGALGEAAPAPEKLPMQDVFDARREVLDLHMAPALERYLVELVLASRDPSRYDAGLGRRIAWGASPRGSIALERCARARAWLAGRDFVTPDDVRAVAADVLRHRVLPSYEATAEGWDGERLVQELLARVPAP
>NZ_CP040430.1|WP_005414346.1|3746155_3747085_-|DUF58-domain-containing-protein
MTDPSLEAASTVSDGDGLRPHLSELVALRRLAQRPPPPRRGRAGNAGQAPSPLRGRGMEYAESREYVAGDDARHIDWRVTARTGRAHTKLFQAERERVSLIVADTSPALYFGTRVRFKSVQAARAGAVAAWSAQRRGDRVGALRGSDREAPIAPAGGPRGVLRVLDALTRWYTQPPADDLGLERALDHAARVLRPGARMLVLADPQQAARIPVVRWSALAQHHDLSLVLLVDPLELQPPSAALQFQTAQQRIGLDLRRSEVQAHWQAHFVEPLQALRRQLGARRVDVQVLSTDAPSDAWLAPPVTEVPA
>NZ_CP040430.1|WP_062605738.1|3745709_3746159_-|DUF4381-family-protein
MSANLPLRDVQLPPAPSWWPPAPGYLMVGGAVLLVILALALLWWQRRRRRQRWLQAFDQELTTTADATAELAAIAGLLRRAARQAQPGSESLRDDAWWQRVDPKGTLPGARRSLLAEGAYRPRVDASEVAAVRSWARERYLAMLLERRR
>NZ_CP040430.1|WP_005410851.1|3744708_3745713_-|VWA-domain-containing-protein
MNLLASYWPWPDLQLAWPLALLALPLPLLMRWWKRRADPGAALRVPYAATELEALAGGGRVDVSWLRTLLLWLGWCALCVALARPQQLGEAITPPQQGRQMMLAMDVSGSMGEGDMVLGGQAVDRLTAAKAVLADFLDRRAGDRIGLLIFGDRAYTLTPLTADLASVRDQLRDSVVGLAGRETAIGDAIGLAVKRLRSQPEGQRVLILLTDGVSNAGVLEPLRAAEVAQAEGVRIHTVAFGGDGSMRFLGIPISADQDPVDEATLKKIASLTGGQFFRARDTAQLAGIYAELDRLEPIAAKGPSLRPREERYAWPLGLALLLGALAWVWPERRR
>NZ_CP040430.1|WP_006466035.1|3756516_3757161_+|hypothetical-protein
MHRARQHAASQTRERRHRLAHEAARLMAEGGIRDYHQAKLKAASRLGIHDDASLPRNTEIEDALREYQRLFSGPQHGNELQRRREAAMRALEFLHGFAPRLAGPVLEGTADANSPVQLHLHSDDPEAVHRFLDEHGIPAESRTRRLRMDRERSLDVPVWVFSAEELTFDLAVLPYDALRQAPLSPVDEKPMRRASVAQLRQVLAEAEITAYIGG
>NZ_CP040430.1|WP_088431160.1|3757337_3758081_-|hypothetical-protein
MYRWVRGIISYRTFYIWRARFRYYTRNLDLWTLISGLCIAGLLLVLWYLWQMLGVPPPRVHPQAAALRIDGVTSEAIHRIVLVRHAGSTPGAPFTTPEEVRASTLRTMRVRQVMDSEVVWRLKADMLADIADYITATGGCFPYNCRRVLDRLGYVRQAGVENAQINAALSTVLEVPLDQMPPLEADEHERVKSGWSDGFDDIYYQSWLLRDLQVMHAQMMREYPRRAPAPWLPRLFSDPLRDTRLVW
>NZ_CP040430.1|WP_154267979.1|3758150_3763214_-|autotransporter
MNHIYRRIWSTAKNCWVLGSELAVSRGKRGGATIDRRRAFVAVLGLLGAGINNAYADLYMGCDPFSPRDVPYCSPHAGQFDEKVFTYYAYTTARNALAMGAGSRVNADNSFAFGHGTRIDGQNSAAFGFKASVYGVDSIAIGYNARTSADGGHNVAIGANAYAAYIGATALGNKSEALAENAVTIGSGASSRVANSVALGANSKATEADTVSVGTAASRRRIVNVADARLNATSTDAVTGKQLYATEQKITALNGMVKAGGHSDSFVIGTGSVSASANSVSVGSASNKRRLQYLADGTVIAGSTDAITGNQLHATNTKVTAATTTADAAKKTADAMAARVDAAAPAIGYTALAEGTGGSASAAVGRAAKAYNTNSVAFGADARAGVDESGEKSAATGAVAVGASSRSGNGAVASGLRASALGDRAVAMGNDASASATHAAAVGYRASASGNQSAAVGRQASASGLFSTAIGNLANAEAESATALGDRAVASHAGSVALGNGSQTTAANQISVGSATVKRKLVNLADGALSTSSTEAVTGRQLNATNTNVTAARSVADSAKTNADNALAKANTLSGLLSQASASGNVRLGASNSGTVLDVRNSASANRKITGVADATLSTTSTDAVSGKQLNSTNSNVTAARSVADSAKTNADSALAKANTLSGLLSETSVSGNVRLGASNSGTVLDVRNSASANRRITGVADATLSSTSTDAVTGRQLNTTNSNVSTAMSDASSAKTAANTALTQVGTLNGLLNQVSGSGNVRVGEKNSGSVLDVRNSANANRKLTGVADGVVSTSSDEAVNGRQLNATNDRVTTVEGVARSAGADAAVAKTDAAKALSETAALGGLVAQVSASGDVRLGEKNSGTTLDVRNSAGGDRKVRGVSDGALSMSSSDAINGKQLYAVSEVANGAERSAQEAIDRIDSIADQSKFSYVGGGGPDKGAKAGLVAVAIGDSAEASTTSEGAVAVGSFASALAKNSVSLGRAAHVDAAAENGFALGVFSSVKADSGVAIGAGSSVENSASNSAAIGAGSVADEAHVASFGAGSLQRRLVNVARGTADHNAVTVSQLKDSLATLGGGVGMDASGNIIAPTYAVQGGTQNTVEDALMALDGAVITAGRRADKVEDQLSSIFQHSPSARADGMNQIALNGANGMVLTNLADGRVAPGSRDAVTGSQLYAAEQKISQNRNDLEAMRKEREMGEQAMRGLDVSVIDYGGARLTGVADGSVSADSHDVVTGRQLFGVSDRVSKIEDQGRFLKINTDELSKDAFAGFLGVAIGDSAYTGTDGGTALGAYATALGVSSVALGRGSAVSADAPHGFAVGAGSQVHSARGIAIGLGSVVESGAAGSLALGAGSAATEVGVASFGNPNAQRRLVNIANGTANHNAATVGQLRVALSALGSEVDTNGNIVGPSFNVQGQSQSTLNGALEALDGAVVSTTSRVNQVESQLRSVFQETPSVRADGTHQLTLAGANGMVISNVANGLIAAGSRDAVNGGQLHSMQQQLNGRMDGLEQRIDDQPQARAMAAASTPSPSTEETAPAPETSGSSQIASTGEGDKPAPQPKSKQDDTPKPQVDTAELEKMLARANEYTDGAISNFERRLDKMDKRFNRMAAMSSAQTAMAMNTAGLATYNRLGAGVGYSEGESAMAVGYQRVLNEKGSATFSLNGAFTNSGERSMGVGVGIGW
>NZ_CP040430.1|WP_088431152.1|3763275_3763983_-|pilus-assembly-protein
MKKLLFCLLPLSALLAAPVHANLSIHPMRAAVDGKRGTQIRVYSHSTQPQYVQARLLRISNPAQVGEEEVEMEAADAAVAITPGKFALSGGGNRLIRVIPLRAVEKEAAYRVYFEGVRGPDGTLLEDGEQAAQANVGVSLVWGALVNVLPANGRVDLQLQGDTLRNVGNLRVGITGLAECSAGGVCKPHDFAKSLYPDAELKLPFLPQPDSTLQLHYRLSKDGYRDHTTTLAPSA
>NZ_CP040430.1|WP_088431154.1|3764001_3765138_-|pilin-protein
MSRRWMCVLMLVCALVLVMPRAWAQRPPDTDPPSGVITHDFKLGWDRSAMPGDIEITAPKTLLAYDPDPDKDYGRLYLTCASRSDSATGRCETEDIASLEAKGTSIPLRFQEQRGGMTRDLTINGAIYRADVTQRCSLDFWRVLLYRLESSESGRCGLDSAGGTGLGLVLDTNELSNLAAGTWQGTLELHLRKPPAQHLATYVFNFQFTVTDYDAISIYFPGFDGIAPLVNMDLRYDPIRKVVGGYKEVDMCLYDGVGSQSEFLGVTVRDSGPRPPPGRDYAVWHGDGGSDDTQRLDYQVSLNYGGNRLAMKNGEEQLLRGIDSAQLRLVMLPGISQPVYCVPTPLTLETPPTPIASKRPGLYDGELTVELRVPTAKP
>NZ_CP040430.1|WP_154267980.1|3765134_3767864_-|usher-protein
MTPHAPAVTRLAVALALAMAAPLVAAHGVPAGFEDLVEGQTEQLDIQLFGRSAGLSPVRVTLEHVQLEDPARVLQGLDLPAEAQAALLPALSQPLPRNSHLACRFGGATAGCGYLDPPEDPAAARALYDEGEGAVRLFVARQWIPGEPAAERYHTVTANAENAFLHQQTLNVSGGRDYQALSARGVGTLGLFDRGHLSADWYYTQQRYRSRGSDDDFQFDNVYYRHDLGHAHYLQAGRMDRRNLSSPQGGTFSFSMLPLDRFQGARVGTTQAYVDTDAAVQATPLTVLLARDARVDVFDGERLLQTFYLQAGINQIDTRNFPFGNYLVRMRIYEDGVLVRTEEAPFDKGGDWTNSQWQWFVQGGRRNERRSDRFDGESVAMAGVRVPLGRDAAITAGAANLGGHSYGELRLDLRRVLATHEMRATLSGMRGSDGSNGQQHQLSYRRKASWNLYQQRMRGKACQFEADARDQLGCTNSLSGSVSLPLAGGNAYVGYTRRQTWRTGWHRPEFDQAPFFGLDPLLPPGPLEPRREPVLSRTWQASFSRSHRWQDFSVSTRVGLWQQRSTDSVRGSNERDRGIYFNLSLTRLQRSHASSGQRRYAVDVRQPQHQRPAIDYSVGKSLRQERDTHYRELNAELRANNTDRYSASLSGQLQNGIGNTTASIAHYEQRGRGETGYSGSHSSGFALGRRGFYWSGAHGAEAGLAVQVDGSDDVDLRGVAAELQVGGLRRQRLQIGERRLLPLSSYQSHRAEVQDASTLDSIAAIRVTGVGGARPMFLTPGKLMRMPVPIEVTYTFIGSAKDLAGSPLGGARILNAPVPGTSANGSFVADFPRRETTLYLLQDDRLLHCPLQVRERRQVVLLVGAVHCEPLAVAQLPPEIRQQARVTRLLQERALIAATPQTAAAGGTP
>NZ_CP040430.1|WP_005410868.1|3767924_3768422_-|hypothetical-protein
MHAILKKAALAAALATASLSAHALETKITVYADVDPTLALLLEDGTPLPDTVQMTHDPLRGLLPSTQQVRIHSNDIDKDIEVRLGHDPVLLNGATRVPLAVSLNTDALTTAVTEFKAADLFNGASSTPGASISMPLTIAQAGAGGPLTVNGRYEGMVYIVMNQKP
>NZ_CP040430.1|WP_088431158.1|3768939_3769947_-|hypothetical-protein
MSTRFDPPERGPLGPDVTAPIVAPPSESAVSWGAIFAGATAAAALSLILLILGVGLGLSSVSPWSFEGVSKETFGWSSIIWLTFTALAASGLGGYLAGRLRTKWTQIHGDETYFRDTAHGFVSWAVATLLTAGLLTSAIGGVLGAGAKVAGAAAGAAASTASVAAAGAGSTAAAAPEGDLNYWVDSLFRSTTSAGPTDPAAPPPGAPMDPNAAPPPRPMPGNGPMGDRREVRAEVNRIIVNSLQGDGLDPADTQYLAQLIARETGMSPAEAQARVTDVQTRMRAALEKARNTAKQAADDARKATAYAALWLFITLLIGAFFASLSATWGGRRRDL
>NZ_CP040430.1|WP_005410870.1|3770384_3771662_-|citrate-synthase
MSDLDQVTLNAGDKSVVLPVIKPTLGNDCVDIAKLTKETGFFTYDSGFTATASCKSAITYIDGDKGVLLYRGYPIEQLSEKSSYVEVAYLLINGERPSAEQLKAFTDELTAEANVDESINTLIGSFAKDAHPMAILAAAIAQLSAIYHDSLDLSDAEQRRQAAVRLIAKVPTLSALIYRHGKGLPANKPDTSLDYVSRFLKQTFESADGQYDLNPDVVKALDLLFILHADHEQNASTSTVRLVGSTGANPYASVAAGVTALWGPAHGGANEAVLKMLEEIGSADNVESAVVKAKDKTSGFRLMGFGHRVYKNFDPRAKVIGEMTSKVLKQLGVQDPLLDVAVKLEQAALQDEYFVARKLYPNVDFYSGIIYKALQIPTEMFTVMFALGRTSGWVSHWLEQQVDPEMKIGRPRQVYTGSDVRDYQG
>NZ_CP040430.1|WP_005410871.1|3771958_3772201_-|type-B-50S-ribosomal-protein-L31
MKADIHPNYRDVVFHDVTSDFKILTRSTMATKETIQWEDGNEYPLVKVEISSASHPFYTGKHKVIDTSGRIDKFQKRYAR

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Crispr_ID: NZ_CP040430_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_11

3963277-3963410

Orphan

Consensus_repeat	Method
CGACCAAGGTCGGCACCCACCAGAGCGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040430_11

>merge|NZ_CP040430|11|3963277-3963410|CRISPRCasFinder
CGACCAAGGTCGGCACCTACCAGAGCAGGTCATGGCAGTGGAAAGCACCGTGCCGACCAAGGTCGGCACCCACCAGAGCGGATCATGGCGTCGATTGGCCCTGTGTCGACCAAGGTCGACACCCACCAGAGCGG

>NZ_CP040430|11|9|3963277-3963410|CRISPRCasFinder
CGACCAAGGTCGGCACCTACCAGAGCAG	GTCATGGCAGTGGAAAGCACCGTGC
CGACCAAGGTCGGCACCCACCAGAGCGG	ATCATGGCGTCGATTGGCCCTGTGT
CGACCAAGGTCGACACCCACCAGAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_049460417.1\|3958801_3959440_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_088428848.1\|3956378_3957599_+\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NZ_CP040430.1\|WP_005411045.1\|3970012_3971080_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380487
NZ_CP040430.1\|WP_138970166.1\|3979233_3979626_-\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|227939
NZ_CP040430.1\|WP_005411035.1\|3957678_3958113_-\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787
NZ_CP040430.1\|WP_154267986.1\|3959436_3960921_+\|hemolysin	unknown	unknown	gnl\|CDD\|238287
NZ_CP040430.1\|WP_043034009.1\|3962788_3963223_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_154267988.1\|3976770_3979128_+\|family-20-glycosylhydrolase	unknown	unknown	gnl\|CDD\|119333
NZ_CP040430.1\|WP_099480192.1\|3954188_3956174_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|183236
NZ_CP040430.1\|WP_024957033.1\|3973950_3976659_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP040430.1\|WP_088428844.1\|3961001_3961337_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_088428836.1\|3971119_3972409_-\|sugar-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NZ_CP040430.1\|WP_088428842.1\|3961333_3962377_-\|peptidase	unknown	unknown	gnl\|CDD\|367567
NZ_CP040430.1\|WP_111687682.1\|3963432_3966462_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|238654
NZ_CP040430.1\|WP_088428838.1\|3967828_3968977_-\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|224733
NZ_CP040430.1\|WP_088428852.1\|3953582_3953993_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP040430.1\|WP_088428854.1\|3950450_3953312_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP040430.1\|WP_088428840.1\|3966761_3967829_-\|DUF1624-domain-containing-protein	unknown	unknown	gnl\|CDD\|226749
NZ_CP040430.1\|WP_024957032.1\|3972787_3973807_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|237092
NZ_CP040430.1\|WP_154267987.1\|3968976_3970005_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225132

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_005411045.1\|3970012_3971080_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|380487	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	8.65071e-119
NZ_CP040430.1\|WP_088428848.1\|3956378_3957599_+\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NZ_CP040430.1\|WP_005411035.1\|3957678_3958113_-\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	1.24916e-09
NZ_CP040430.1\|WP_154267986.1\|3959436_3960921_+\|hemolysin	gnl\|CDD\|238287	cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. .	1.7293e-11
NZ_CP040430.1\|WP_154267988.1\|3976770_3979128_+\|family-20-glycosylhydrolase	gnl\|CDD\|119333	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0
NZ_CP040430.1\|WP_099480192.1\|3954188_3956174_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	3.2579e-72
NZ_CP040430.1\|WP_024957033.1\|3973950_3976659_+\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	1.35532e-172
NZ_CP040430.1\|WP_138970166.1\|3979233_3979626_-\|VanZ-family-protein	gnl\|CDD\|227939	COG5652, COG5652, Predicted integral membrane protein [Function unknown].	0.00094804
NZ_CP040430.1\|WP_088428836.1\|3971119_3972409_-\|sugar-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.48111e-120
NZ_CP040430.1\|WP_088428842.1\|3961333_3962377_-\|peptidase	gnl\|CDD\|367567	pfam03572, Peptidase_S41, Peptidase family S41.	1.2597e-10
NZ_CP040430.1\|WP_111687682.1\|3963432_3966462_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|238654	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.	1.39564e-37
NZ_CP040430.1\|WP_088428838.1\|3967828_3968977_-\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|224733	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism].	4.16659e-162
NZ_CP040430.1\|WP_088428852.1\|3953582_3953993_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	2.01156e-15
NZ_CP040430.1\|WP_088428854.1\|3950450_3953312_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.57792e-29
NZ_CP040430.1\|WP_088428840.1\|3966761_3967829_-\|DUF1624-domain-containing-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	2.91654e-50
NZ_CP040430.1\|WP_024957032.1\|3972787_3973807_+\|ROK-family-protein	gnl\|CDD\|237092	PRK12408, PRK12408, glucokinase; Provisional.	0
NZ_CP040430.1\|WP_154267987.1\|3968976_3970005_-\|SIS-domain-containing-protein	gnl\|CDD\|225132	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane].	5.10817e-114

>NZ_CP040430.1|WP_043034009.1|3962788_3963223_+|hypothetical-protein
MNTPHPTYPRLQALLGAALPGLQLPTTAAEALEDALAEANEQAPPSAFFARLRGIAHSHAADGQAWRERQLSEGRGRELAEATRCLAALSACGGVLLAAQSARETDDAQAQCPPQVEEGLLHAMVVLADHAGALVEPDACAPLL
>NZ_CP040430.1|WP_088428842.1|3961333_3962377_-|peptidase
MQVRKGVRRIGALMLVLLATGAMADMPGAVEVPSPEAQAEILNLLERQALYRDRVDWAATRVRLQSAQGDPAQRLAVLREAIAVSTGNHGGWTTTQRQSESLARAQQAGAAAVDRAKAADAVDMRIGWVVIEGYASTPGATPQEKFRQDIQRAARWQQVIRSKDDGARCGWIVDLRDNSGGNMWPMLLGMAPLLRTSVVNNEDVGSFETAQGPERWTLTATAVQRAGKSVLDFGQSGYVLRQPGAPVAVLFGPRTGSSGEASVLAWRGRPQTRSFGQPTAGVSTGNVVQTLADGSRLLLTTTVMRDRNDRGDGLKIEPDQRIEGDAATLATAEAWLLAQPACQAADP
>NZ_CP040430.1|WP_088428844.1|3961001_3961337_-|hypothetical-protein
MILIGQQERVVVVGPTEAHHCLRCQTETEFAPQLRYKMARIDLLFGLTYQRRYELACTRCGHGWVLDTETMDQQLGGVPIPWRHRFGLPLMLVVVVGLAVAGWMWRNLYSS
>NZ_CP040430.1|WP_154267986.1|3959436_3960921_+|hemolysin
MRPLTNAALANAAYSPPSHPAPGDKESLRVDGEDFEVLGRRDAVSGYQGVVYRNIKTNEIIIAHRGTEFDRQAILDGGVDAAMVSARVNAQIDDALVLTKQAIKQAEENGYGPVYVTGHSLGGALAQITAYHYNLPGDAFNPYGAAGLAYRLPEGQPANAAPFTNHVMAGDLVSAAGPHYGKVEMYALPKELGVLRDAEQGQRIASLVSLGMKSGHVMSAAVAVQLGDSHRMVHFIDRMTDKGPVQSVLDDPGARITDAEDLRRIAEYRKDIHQLRLGATVLVGGGPGLLRDGVNYLLGTGEAGAYARREAEAVQHAESALKAGERPVQEATEKGSPSLSNPGFAPKSPLQESIESTLDKAGLVPRKEGHPDHALYRQIRDGVSAVDARHGRGFDETSERVTAGLLATAKRSGLERVDHVVLGNPPSDGSGPRMFVVQGALDNPAHLRASIAVSEAVNTPVDQSLAKVEQISQAQQVAQQEQTQEQTRTAMRMG
>NZ_CP040430.1|WP_049460417.1|3958801_3959440_+|hypothetical-protein
MLKPSPPLTHVALIALITLAVSGCNKERSYPVYRENPAPKDALPIVIRVHDAPVELTLPKVFVSYEIDPLCLPPINNYEGVQYAPQRHSVEFPVQRVSATEFSSTVFEDGMAVADYYGRGPCEWKPSIIRASFPVISEGREGFISVAVHHLELKKLLTSISYADSQMTLQTKSSTPGWVRTQSQYSYNRLSDIEKQKYFAIEISSPSKGIVP
>NZ_CP040430.1|WP_005411035.1|3957678_3958113_-|SseB-family-protein
MDHDTPFEPLNDLEVRLLQAQDGTLTASQFLDGLLTSTAFVLLDKAIGEDGAWDESISPLVLTSESGEPMFAVFTAPERAGLWHEQLPQFAHAMPIAVHALLAGIGDGVGLVLNPGLDVGMEMIPDAVAQLKQRAAAITRGMAH
>NZ_CP040430.1|WP_088428848.1|3956378_3957599_+|multifunctional-CCA-addition/repair-protein
MKIYLVGGAVRDRLLQRPAGDHDWVVVGATPAQMETQGYTAVGRDFPVFLHPKTGEEYALARTERKSGRGYRGFVVDADPGVTLEEDLQRRDFTINAIACDEDSGALVDPYGGVRDIEQRVLRHVGPAFVEDPLRVLRAARFMARFAPLGFTVAPETMDLMREIAASGELDALVPERVWQELRKALVSERPSAFLRTLHDAHALGPILPELEALYGVPQRAEFHPEVDTGIHQEMVSDMAAKLAPGDDLVGFAALTHDLGKGLTPPAEWPRHIMHEQRGIKPLKALCARLKIPAEHQQLAEAVCREHLNVHRIDELRDATVLELLGRCDALRRPERVARIALCCEADKRGRLGFEDADYPQGETLKRLHQAALSVQARDLDTTHLRGPAIGEALAKARVKAIAAAR
>NZ_CP040430.1|WP_099480192.1|3954188_3956174_+|transglycosylase-SLT-domain-containing-protein
MLGAMTRRSSTALSLLPLATTLLIGCANAQSLDAQNAQLKAAIAAAERGQFDPGQAAALSRHPAYGWLEYANLRRNIDTVDTAQAQAFLKRYDGQAVANTFRSVWLPSVARRQDWPTLLANWAPTDNVGLRCAQLTARQVTGKVDPQWISEAQDLWRKNGKSLPDGCDAVFAVLQAQGGLSDALRWERIDAAADAQQPAVMRSAARGLPAADLAQANSYAAFVDKPNASALNWPRNERSRRIATDGLAKLAKADPAATEQQLPQYAQALGLSAEQQGQVLYQIALWTVASYLPDSARRLNAVPESAYDERLHEWRVREAMSRGDWPAALTAIRKMASKQRSDPRWRYFEGRMLEKTGQAQQAQPLFREAARAPTFHGFLAADKLQQGYTLCPWKPNDSAQAQAVIARDPAIQRAMALYQIDRTGWAVAEWNSALSRFDDTQRRLAVRVAQDNGWFDRAVFALGKQPQEQRLYDLRFPLHHDATIRRESARNAIDPAWVAAEIRAESTFTPRARSPANAMGLMQVLPATGAGVAKSIGLTGYGGADSLYDPDTNIAIGTAYLRQLMNKYDGLPYVTIAAYNAGPTPTARWQSQRPGFDPDLWIETISYKETREYVARVLAFSVIYDWRLNGDALPLSDRLMGRLVDKRKNFSCAANAEQGGD
>NZ_CP040430.1|WP_088428852.1|3953582_3953993_-|biopolymer-transporter-ExbD
MRYASVHARALMSGINLAPLVDVLLVLLALVVTTLPMAQTTAVRTFQQGTVCPPGPGHTPPASIALHLDAAGGVYWNDRPLDDPSLQHALAQLQQLPPALQPSLHLTTADSTDYGDMAQVLFAIEGRGLRVTAQGY
>NZ_CP040430.1|WP_088428854.1|3950450_3953312_-|TonB-dependent-receptor
MKYLHHRPLAVAVALCVTALAPLGAAAQSTTNLDAVEVTGTRIKRAEVEGQVPIQTLTRGDIERTGLTSIGEVLQQLTGSGSALNAKFNSSGNFGFPPDGSGVGAGSAQVDLRHLGAKRVLVLVDGIRWVNESSASGVGSATDLNTIPLAIVERIEVLEDGASSLYGSDAIAGVVNIITRRDFDGGQVTLNYGEYSKGDGTQKGVDLAWGKSGDRFSLFLGASWTKQDPVFAKDREQSRFPIPGTGLAFGSGGIPQGRFMFTDPNTGAVQNIVPNTGVSNPRYDGSAGCSRTDDYHCFTTADRFNFAEYNMVLTPSERKGLFGQFRFDITDNVQWYVKALGNRRESTNQAGPEPLFFGPDGATGNPLADNIVVSRLNPYNPFGFDLVSGDNMSLIGRRPVEGGARVFKQKVDTTYFATGLVGDFHAADRSWYWDVNGMYSKNKAEQTNYGSYDIYKVNMALGDPSVCAATPGCVPLNIFGGVGSITPDMLKWIQPVVRDRSQNELSLFTANLSSELFSLPAGPVSFATGFEYRKYKGSYQPDPLTVIGHYNGVPSQPTSGSYDVNEAYLELSVPIFADSSFGKKLDLSLAGRYSDYSTFGGEFTPKYGLRWQVTDDFVLRTTYAEGFRAPSIGELYGSAARADLQLFDPCSVGLGGTPPRGSAANCAALGVPAGFQQANSQISVTTGGNRELEPERSRSFSAGFVWSPWFGNNASWSERFDVEVTFYRHAIDGAIQAINAQTQLDLCVDTLDPVYCDGITRASTGAVSSFNNRLTNLGSIKTDGWDVDLFWTLPQTSIGQFKLAWKNTFVGRYEATGAAGQKQPQKPGVEVADSSIPEWTSNASIGWTMDRWSANWTVRHISELTENCGDAAAFPVCSNQAAGTNTLSATTFHDMQVGYKIDWMKGLQLTAGLNNVFDKDPPICLSCSLNGYDASTYDIPRGRYWYLRADLRF
>NZ_CP040430.1|WP_111687682.1|3963432_3966462_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MYRAVPRAFRPRRLAVSVLQALAVPSLLLTTASVAWAGCNSPAPTAGQTVTCDTNAPNPQTTPVAANGAAGITVNVAAGAQLQQSGGGSAIALVGAGGHLLSNQGAISSVGGVTVQLGGGSRVDNTGSISTGNNTALQFVGAGDSVLVNRGAISGRTGVQFDAGNDRLEMQSGSITGGVLQGDGNDVLLLSDGTIDSVDQGGGDDQMTVTGGAVTGVVAQGSGRDDFIMSGGTIGALQQGDNIDTFRMSGGRIIGAFEDGDQAWMTAGRIGRVNMKLDKNLWDQSGGTVDGNVVTGFDTDTIIISGTAYIGGNISVSGGNDSVTITDGTVRGQVLLSTGSDTFNWSGGGIVYGAIDMGPDNDVANLSSLNQGNLGAVPLFDGGSGIDQLNFNNVKTTGVARFQNWEAISLANSTELTFDGDLVLGDSATGTGTLTVDDTSTLYAGSGGHAIRPFNSAALVEMVNAGRIDLTGTGAGDVFTVRGNYRGDGGGLYLRTVLGADNSTSDRLVIDGGSATGTTGIGVLNAGGIGAATLADGILVVQALNGGRTAPGAFSLFAPVAAGAYEYFLFKGGVSAGTSENWYLRSTLVAGPAPAPNGSGINGVPPPPTPPVAPPPPITPAPPPPPEGATDPDLTAGETAPPPPPPEPAPVAPPSDPAVPDVPVAGGSLPGTGAPPTPGARPAEGAVVPLYRVETAAYAVVPPLLRETSLASLGTFHERQGEQRLLYNQGAFRTAWGRLVGQSSEIHWKGDAQPGFDGDVMGLQAGLDVWAAASDNHRNQIGVFVGRTRAQGKTSGLALGWENVQVGQNRLDDKHVGLYWAFTDSSGGYIDAVAMQSRYDGRVRSSRGLGFGIKGDGTSVSVEAGKPLLHFGQSAWWLEPQVQVIWQRTSLDDRRDAVSSVRFDNDNAWTGRVGLRLAGDYQLADNGWQPYFKLNYWHGRSGEDRIRFDDDVIFNSQRSRALEAGVGVVGRFNRTISAYAVADYTRELGGDRNEKRRIIEGNIGLRADW
>NZ_CP040430.1|WP_088428840.1|3966761_3967829_-|DUF1624-domain-containing-protein
MNSSPPRRLGSIDALRGITVAAMLLVNNPGDWSAVFAPLRHSEWHGCTPTDLVFPFFLFLVGVSMAFSVAPRAQDAAARPALARGVLERALRILMAGALLHLLIWWALDTHHFRIWGVLQRIAVCAALVGVLAVYARPRVQVGALIALLVGYTLLLLGIGDLAPWTNPASRLDTALFAPWIYQWHADTGLGHDPEGLLSTLGALASTVLGLLAGGLLRNGRSAALAGLGVATAVLGLLLAVVLPLNKQLWTPSYVLWTGGLAALALWLGHVLIDQKGWPALGRRFGVNAITAYLGASVMSVVLMATGIWGWIWQQLATAMPQALELASMLQALVFVALWWGVAWWLDKRKIYLKI
>NZ_CP040430.1|WP_088428838.1|3967828_3968977_-|N-acetylglucosamine-6-phosphate-deacetylase
MATVLRNARILAGDDFHDDLALVIENGRISALLPDAAPQLGHAAEQVDLGGGWLLPGFIDVQVNGGGGALFNNTPDVAALRTIAQAHRRFGTTAMLPTLISDDVAVMREAIAAMRAAITQGVPGVIGIHLEGPYIAPARKGTHDASKFRVPDEGEIALAASLDNGVTVLTLAPERVPLETIRALVERGVIVAAGHTAGTYEAIRAGLDAGVRGFTHLYNAMSPLQGREPGAVGAALEDRDSWIGIIVDGVHVHPASLRVALAAKPRGRLLLVTDAMPPVGADDPSYVLYGETITAVDGVVRNAAGSLAGSALDMATAVRNTVQLLGQPLAEAARMASTYPAQFLNVDDRLGHIAEGYQADLVLLDDALQVRGTWIAGQYEAA
>NZ_CP040430.1|WP_154267987.1|3968976_3970005_-|SIS-domain-containing-protein
MSLSDPTSTLMFAEAAEAADVVARQFSRNHATMETLAASLRAAPPPFVVTCARGSSDHAATYGRYLLETQLGLVVASASPSVGSVYAAPLQLRGALFIVISQSGKSPDLLRNAEAAKAAGARVIALVNVEDSPLAQLADTVIPLHAGAEKSVAATKSYLASLAALLQLAAYWKQDSSLRAALDLLPDALREAWQCDWSAVTEGLVEATNLFVLGRGLGLGAAQEAALKFKETCSLHAEAYSSAEVKHGPMALVDRGFPVLAFAQPDETGAGTRAVVEEFTARGAQVWMAGAGGNLPVAAAPHPLCAPLLTVQSFYRAINALALRRGFNPDLPPHLNKVTETV
>NZ_CP040430.1|WP_005411045.1|3970012_3971080_-|LacI-family-transcriptional-regulator
MRRATIKDVAEKAKVSLKTVSRVINNEPSVMQATRARVLRAIAELDYEPDPSARNLRSGTTFVIGLVYDNPNPYHIIGVQNGVLAACRETGFGLQIHPCDSSSPLLADELADWVQRSRLAGLVLTAPMSERRDLIQALTARGIKLVRIIAATEDPADGACVFVDDREAAYEITEHLIQLGHQRIGFLWGGSSHRSSGERYAGYEAALKDYGMTVDKHLVVQGDYTFDDGFRGARRLLALREPPTAIFGSNDEIAAGVLAAAKSAGMNVPYDLSIAGFEDSPFSRQSWPPLTTAKQATEDIARHAARLLIAQLRSDAYDDAPAPLHNQGFVPQLVVRGSTAPMRPAGARPLPSDPA
>NZ_CP040430.1|WP_088428836.1|3971119_3972409_-|sugar-MFS-transporter
MSAVSAASVRPNVATSIAIVGVLFFLIGFFTWLNGPLITFVKLAFELSEVGAFLVLMVFYLSYFFLALPSSWILRRTGMKKGLSLSLLVMAGGAALFGEFATQRWYPGALGGLFVIGSGLALLQTAINPYISILGPIETAARRIALMGICNKIAGILAPILIGTVVLHGIGDLDVQVQAADAATKAVLLNQFAAKIHAPYLAMAALLVVLAVAILFSPLPEIKSSEANATPVAAGAVERRSIFQFPHLWLGVLCLFVYVGVEVMAGDAIGTYGHGFNLPLDETKMFTAFTLGAMLVGYVVGLLVIPRVVSQSRYLTISAVLGVVFCLGAWATHGYVSVAFVALLGFANAMMWPAIFPLAIRGLGRFTETGSALLVMGIAGGAIIPQLFALLKQHIDFQLTFVLLMVPCYLYILFYSVIGHRAGLPQDKA
>NZ_CP040430.1|WP_024957032.1|3972787_3973807_+|ROK-family-protein
MTASHPAPAHVLSRIAPSFLAADVGGTHVRVARVQASGDAAHPVQVLEYRKYRNADHAGLSAILSDFLGEGPRPTHCVVASAGYAREDGTVITANLPWPLSARQVEADVGLQRVFIVNDFEAVAYAAAQVDASGVLHLCGPETAARGPTLVVGPGTGLGAALWIPTAHGPVVLPTEAGQPTLAASTELEMAIVRHMQRDRAHVSIEHAISGPGLMNLYRAVCALQGQAPTLASPDAVTAAAMADSDAHARQALDVFCGLLGSTIGDMALFYGAHGGVYLAGGILPQIREYLHASTFVERYLQKGPMGEALARIPVKVVEHGQLGVVGAASWYLQQQSAA
>NZ_CP040430.1|WP_024957033.1|3973950_3976659_+|TonB-dependent-receptor
MNTRKTLLSAAIVSCIAFSAHAQQAAQTATDLDTVQVTGIRGSMEKSLDTKREANARVEVVTAEDVGKLPAHNVADTLQRLPGVNISSSSADEGGFDEADRVSLRGTSPSLTQTLINGHTVGTADWFVLSQGNNVGRSVSYSLLPSELVRSVEVNKSSQAKLQDGGTTGTVNILTRKPLEFSKQLTAEGSIGMVRSDQAKSNDPQLSALFNYKNDEGNFGVMVQAFSQKRELRREAQEIPGGFFQIDPNGTVAKSNPDLAGVYAPGLLGSTLFEQTRERKGGLVSLQFKPMDNLTLGLEGFSSELKANNYNRNFMLWGGRILNDRTVEDANGNKILIPGQAPNPGYVIKDGVLSNATFAGQADRDYAVYDMIYRESKAKTNYITFDADWQISDNLGMKFQAGSTKGTGETPRQYIAEVNLARGGGATWATHGNGSPIDWNVGGNIGPSGVSDFGTWGNQQVTAIDKEKWATLDFNQYFADAGVLNSIDFGARFGDHKREAKSPEGATPGAIWNALKNGATANFPGGFANGIGGSFPRDLWYFTPGALKEAVTNNSTWLSGNDGPTGRHNYGAEWTVSEKNFAAYVQGNFSGDRWSGNVGLRYVNIKQDIDTYAAATGSTVPDVSSLFGAWTREAFENKHNRVLPSANFKYDLRDDLVLRVAASQTQTLPDFSALGASSYGSDLNRTGGGGNPKLKPVVSTNFDANLEWYFMPRGMLSIGAYSMRLKDYVAFSTEKEMLFSELTNRLEEYNISRPRNADGKVRGIEVAYEQPIGEYFGVNANYTYADGSTDHTWADGSDNLLGTSKNTYNVGAYFENDTFGARVSYTRRSSFLIGLSGANPYYQDDFGTLSASLSYKATDWLSISFDALNLNNPTYKYYQTAAIPTSFYSNGRQYYLNFRFKY
>NZ_CP040430.1|WP_154267988.1|3976770_3979128_+|family-20-glycosylhydrolase
MVKPSRARMRSAVLLGSLLALLPALPALAADPTPATEAPGPLLRAGSLMLIPAPASVQRGQGSGITVRADTVLQAEGEAAQRVASQFADLLARSGGPRLAPASGKAAGTSGSIRFQIVPTFRDSGESYTLESTAQGVLIQAGNEIGLFYGATTLAQLATGGSNGVLPAVQIQDAPRFSWRGFMLDSARHFQSLDEIKRVLDAMAAHKLNTFHWHLTDDQGWRMEIKRYPKLTDVGSCRLPAGDGGIDPVTGKEHPYCGFYTQDQIREVIAYAAKLHIQVIPEIDVPGHATAAIAAYPELGTIDTPLKPISEWGVFPNLFNTEDSTVTFLENVLEEVIDLFPAKYVHVGGDEAVKDQWEASKQVQQRMRALGIKDEMAMQSHIIKRLETFLEEHDRRLIGWDEILEGGLPPQATVMSWQGTEGGLAAASAGHDVIMSPVGYLYLDYLQTASPNEPPGRPTQVNLGKLYNFEPVPAELAADKRGHILGLQANMFTEHTRSYARLQHNLFPRLAAVAETGWSTPEHRDFRDFLARLPSQLQRYRAWGLAYAQTPFEVGVDYTDNRADNTVTVSLANPLGYEVRYSTDGQPLSAQSPLYQQPLTGKLPTTVQAAAFYQGQMLAAKPTIATFTAQSLLSRRSDELLSCVGKKGLVLRLEDDGPREGNRAVFNVDIFQPCWRWPQAQLDGIGSLEVRAGRIPYYFQLAHDEPKRRFEKAKRPHGEMQVRRGDCSGKVLAEVPLPATPDADGFVTLRAALPKGTQGSGDLCINFTGDTRPAMWVLDEVTLGK
>NZ_CP040430.1|WP_138970166.1|3979233_3979626_-|VanZ-family-protein
MSEVLSAIKPLRRPRLWAALWATAVLLVIVVCLIPPPPIPLPENSDKGEHFLAYFILAGSAVQLFRRGRPLLWVGVGLVLMGIGIEFAQGALTSNRMADPMDAIANTVGVLAGMATALTQLRDLLLRWRG

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Crispr_ID: NZ_CP040430_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_12

3998680-3998780

Orphan

Consensus_repeat	Method
GCTCGCTGTAAGCGAGGGGCTGAGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040430_12

>merge|NZ_CP040430|12|3998680-3998780|CRISPRCasFinder
GCTCGCTGTAAGCGAGGGGCTGAGGGTGAAGCGGGTAGGTGCCGACCGTTGGTCGGCACACCGGTTATTGCATGGCTCGCTGTAAGCGAGGGGCTGCGGGT

>NZ_CP040430|12|10|3998680-3998780|CRISPRCasFinder
GCTCGCTGTAAGCGAGGGGCTGAGGGT	GAAGCGGGTAGGTGCCGACCGTTGGTCGGCACACCGGTTATTGCATG
GCTCGCTGTAAGCGAGGGGCTGCGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_088431881.1\|4000263_4001532_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP040430.1\|WP_033834551.1\|4003665_4004760_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP040430.1\|WP_043033998.1\|3990753_3991989_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_005411065.1\|3995275_3996286_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP040430.1\|WP_154267991.1\|3988504_3989548_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183212
NZ_CP040430.1\|WP_005411063.1\|3992006_3992597_-\|DUF2242-domain-containing-protein	unknown	unknown	gnl\|CDD\|378349
NZ_CP040430.1\|WP_005411073.1\|4004896_4006009_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP040430.1\|WP_005411059.1\|3987949_3988333_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NZ_CP040430.1\|WP_005411078.1\|4011283_4012222_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917
NZ_CP040430.1\|WP_005411075.1\|4008084_4008570_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NZ_CP040430.1\|WP_012481291.1\|4001528_4002674_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
NZ_CP040430.1\|WP_005411074.1\|4006005_4008081_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP040430.1\|WP_005411066.1\|3996303_3997014_-\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_CP040430.1\|WP_005411077.1\|4009953_4011000_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP040430.1\|WP_154267992.1\|4008566_4009832_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP040430.1\|WP_005411067.1\|3997001_3997280_-\|DUF493-family-protein	unknown	unknown	gnl\|CDD\|179161
NZ_CP040430.1\|WP_005411069.1\|3998945_4000163_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP040430.1\|WP_043033999.1\|3989837_3990743_-\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
NZ_CP040430.1\|WP_005411064.1\|3992841_3995019_-\|tail-specific-protease	unknown	unknown	gnl\|CDD\|236873
NZ_CP040430.1\|WP_154267990.1\|3985897_3987715_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_088431881.1\|4000263_4001532_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	2.06827e-51
NZ_CP040430.1\|WP_033834551.1\|4003665_4004760_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.06609e-141
NZ_CP040430.1\|WP_154267990.1\|3985897_3987715_-\|PAS-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	5.20474e-57
NZ_CP040430.1\|WP_005411065.1\|3995275_3996286_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_CP040430.1\|WP_154267991.1\|3988504_3989548_+\|oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	1.93794e-131
NZ_CP040430.1\|WP_005411063.1\|3992006_3992597_-\|DUF2242-domain-containing-protein	gnl\|CDD\|378349	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242). This domain is found in various hypothetical bacterial proteins, and has no known function.	6.04556e-62
NZ_CP040430.1\|WP_005411073.1\|4004896_4006009_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.19066e-144
NZ_CP040430.1\|WP_005411059.1\|3987949_3988333_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	5.08321e-17
NZ_CP040430.1\|WP_005411078.1\|4011283_4012222_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	1.16177e-116
NZ_CP040430.1\|WP_005411075.1\|4008084_4008570_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	7.1233e-30
NZ_CP040430.1\|WP_012481291.1\|4001528_4002674_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.42047e-138
NZ_CP040430.1\|WP_005411074.1\|4006005_4008081_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP040430.1\|WP_005411066.1\|3996303_3997014_-\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	8.74975e-140
NZ_CP040430.1\|WP_005411077.1\|4009953_4011000_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP040430.1\|WP_154267992.1\|4008566_4009832_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	2.0763e-87
NZ_CP040430.1\|WP_005411067.1\|3997001_3997280_-\|DUF493-family-protein	gnl\|CDD\|179161	PRK00907, PRK00907, hypothetical protein; Provisional.	1.56476e-63
NZ_CP040430.1\|WP_005411069.1\|3998945_4000163_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	7.03159e-149
NZ_CP040430.1\|WP_043033999.1\|3989837_3990743_-\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_CP040430.1\|WP_005411064.1\|3992841_3995019_-\|tail-specific-protease	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0

>NZ_CP040430.1|WP_005411067.1|3997001_3997280_-|DUF493-family-protein
MEIKSDNPDHGFQFPGQFELSAMGPANRGLEHELPRLLLAAGIDVVNERISWKHSSNGKYVSVRIVFKAESREQYDLAHQALRDHPEVKWTL
>NZ_CP040430.1|WP_005411066.1|3996303_3997014_-|lipoyl(octanoyl)-transferase-LipB
MDAVADSCPAEAAPEDRAPRPALVRDLGRQAYEPVWRAMQRFTDQRSDTDADELWVVEHDPVFTLGQAGKDEHVLAPGDIPVLHVDRGGQVTYHGPGQIVVYPLLRLPRLGIGVRDYVCRIEQAIIDTLGEWNIGAERREGAPGVYVGGAKIAALGIRVRRGCTFHGLAFNVAMDLEPFHRINPCGYQGLQVTSVVDLGGPSGMEAVKPVLLDHLARQFGLLLQHTPELPDLSAAA
>NZ_CP040430.1|WP_005411065.1|3995275_3996286_-|lipoyl-synthase
MTETTARSIPLQIVQGDSPSAAPLQAGVKQLGGDKINRSPVQFADAPVLRKPSWIRVRIPSGNAVQNLKAKLRENRLVTVCEEASCPNIHECFGHGTATFMILGEVCTRRCSFCDVAHGRPKPPDANEPASLGQTVADMGLKYVVVTSVDRDDLRDGGAQHFVDCITAIREKSPGTRIEVLTPDFRGKGRMERALEILAQNPPDVFNHNIETVPDLYRNVRPGADYQWSLNLLKNFKAQHPDVPTKSGIMLGLGEDFEQIKATLRDLRAHDVDMITIGQYLQPTAHHHPVLKYWTPEDYKALEDYGYELGFSHVASGPMVRSSYHADVQAKGAGVS
>NZ_CP040430.1|WP_005411064.1|3992841_3995019_-|tail-specific-protease
MKFKAPAFLMALALVAPLALAAKADSPALPAAATADQVTTSKLVYGLLSDSRYAYRPRALDEATSKDVFKRYLETLDGGKQYFTQADVARFAPFEANIASAIRGGELEPAFQVFAVYKQRVGERVAYARKLLKQEPDFTTDERFEYDRKKVPWAASSAELDELWRKSVKNDWLRLKLAGKKPDDIRKTLDKRYATLEKSVNELKGEDVFQFFMNSYTSAVDPHTDYFTPRTAENFNQAMSLSLEGIGAQLQRQDDVVVIREIIAGGPAAVDGTLKPGDRIVGVGQGKSGLVEDVIGWRIDDVVAKIRGAKDTQVKLEFIPAAEGADGKHHTLVLTRQKVRLAEQAAKGETMTIPAANGEPARRIGVIKLPTFYQDFEGRRRNAADYASATRDVAKLLAGFKNDKLDGVVLDLRNNGGGSLDEAIELTGLFIEQGPVVQVRESGGRVTVNSDRNQGVAWDGPLAVLINRGSASASEIFAGAIQDYGRGLVIGETSFGKGTVQNIVDLDRWPSGETQRFGQVKLTIAQFFRISGSSTQHKGVVPDLAFPASVDATEFGESTYDNALPWTRIAAVPHTQYGNFAPLLPKLETRHDARIATDKEFQWWNEDVQQFRTEAAKKYISLNEATRRAERERQDTQRKERQVQRKELGLALDPLADDSSDDGLTGNERDIVKDAAREKAAEKRPDPLLRESASILADAVNLLANDRPLSAQVLPQSTGAGRWAD
>NZ_CP040430.1|WP_005411063.1|3992006_3992597_-|DUF2242-domain-containing-protein
MRASRLSSVAVALASALILSACGGRAADSTLLRESFDSGDTFSRTVDGRPGDACEAARRTLLSQGYAIARSDAAQVEGNKNFQPREDDHEQLVLRISCAPRGSQTLVFVSAVQDRYALKKSPTSASVGVGALGSVSLPFGSNDDSLVKVASSTVTDAEFYRRFFQRLQQYLPAEAGKPVPPVATTPEPAPASTDQD
>NZ_CP040430.1|WP_043033998.1|3990753_3991989_-|hypothetical-protein
MGVALLLPALGAAATPLDCTQGLLQRLGWHFETRAIGAPQVHGGPVCTRASLPEAQAAGDLRVQWPADMPAAARKALLQQVLDDPATVCAYAFQLGAATQRAAAALQGNAGFRFSGLQLGWIGFGLHGAQAQGWQRTRSFGRGFVPITGNSQALQAFYSGNVRAECGVGRQVAQLATQRELYGDAAFDAGFSAEELSIGTFLALHDTDSILLGAHAGDYFADGKAVRTSAMGRQAFVGVPGFIEHVYDKGMLDDLSNQAENFVVVSVGEEAAQALAAHGGLAWYDQRNAELWALAQDIPRIGRRYFERLLFERDPDLRARLEPRYHATLARMDRLLDDPFYQQFVIYVHPRGIRPIGYHIARLLDRNPRTPFSIDLAVHNLHTTLYRRWREAQLRHCAATGRPGSLTLDPN
>NZ_CP040430.1|WP_043033999.1|3989837_3990743_-|decarboxylating-6-phosphogluconate-dehydrogenase
MDIAMIGLGRMGANMAQRLHRGGHRVVGYDPGEGARQRAAEAGLEVVDSLAAAVAALPVPRLVWLMVPAGETVDQTLGQLTPHLAEGDIVIDGGNSNYQDSIRRAKALAEDDLGYVDCGTSGGVWGLQEGYSLMVGGEAAVVEQIAPLLRTLAPAEDRGWGRVGPSGAGHFTKMVHNGIEYGMMQAYAEGFALMERKQEMELDLAQVAEVWRHGSVVRSWLLDLSTEALKRNPSLDGIAPYVEDSGEGRWTVAEAIALDVPAPVITLSLLERLRSRESNSFTDRLLSAMRNEFGGHAIKKS
>NZ_CP040430.1|WP_154267991.1|3988504_3989548_+|oxidoreductase
MRPDLQLALIGYGLAGRVFHAPLIQHTPGLVLHSIVSSQRDTLLRAFSDVHVRATPQEVFDDPAVDGVVIATPNEQHAPLAIAALAAGKHVLVDKPFALDVAEAEVVLAAARDAGRIATVFQNRRFDADFLTLQALLVDGTLGDIAECHVHFDRYRPQVRDRWREQDGPGSGLWYDLGPHLLDQMLVLFGWPEAIDADLAVQRDGGSAIDYFHAVLHYPRHRAIVHSGSLVAAPTPHFSVHGSKASWIKHGLDVQEAQLRRGVAPGAPGWGIDPRHGELVRCDAEDNVQRGTVDNLPGDYRRLYAQFAAAMHGDGEATVEPVQALQLMRLLQAGMDSAREGRRIALG
>NZ_CP040430.1|WP_005411059.1|3987949_3988333_-|BON-domain-containing-protein
MSNTTRTLIASALTLGLALSSSAAFAKDPAAKSPPTSAHPATHADRHDSNEPVTDTWITTKVKADLLASSNVPGTEIKVETVNGVVSLSGAVASQAEKDKAVTTAKGIKGVTRVDAAALKVSAAAKR
>NZ_CP040430.1|WP_154267990.1|3985897_3987715_-|PAS-domain-containing-protein
MALVFSDDIWDRWRLPALALAAAAIIVVPWLTLRKLQQDNEQAMAWVNHTQAVGVALQQLQADVRDVESAALTLSKGVDAPGLRERMAAANGIPGRLAELGRMTRDNPDQLIRIGRIESMLEGRMALARELARSEPNSDQRELVKDLSTRYPIRGLVEELQASEQQLLTLRAEQAARQRKQTELVSWSSLVIQLGLLGLVLWLLQRQIGRRLHAERQSLRSAARAASVLQTVREPIVLLDRDLRVQLHNPAFAELYGLQDERADGLLLENVGDGAWKDAVVRQRLSDVLLRGRELWDFEHEQRTADGMARYMLLNARRMPLPDTDDEVVLLTVSDVTMQRAVQLRVEELNRQLEGKVAQVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLSRHLGDAADDKSRHYLDVISSSARRMAALIDDLLVYSRLGRAAMRQQAVDMQSLVADTRAMLDSNLQAEAENSGHVHQVEWSIAPLPIVVGDENMIRQVWLNLLGNAVKYSGNREPAKIRVDYQPQPDGGHQFTVSDNGAGFDMAYAGKLFGVFQRLHKASDYPGTGIGLASVRRVLTRHGGRIWAEAEPDVGATFHFYLPPAIDADKQGPSA
>NZ_CP040430.1|WP_005411069.1|3998945_4000163_-|D-alanyl-D-alanine-carboxypeptidase
MNFRSAATALAATLVVGLASAQTPLPTPATPAPAAAAAPATVATPPAPAPSVSKAWVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNWGFRFFETHRLYEPGKAVAEHKVWKGTTDKVQLGVAQPMLVSVPRGRYNDLKPSIDVPKTLEAPFTAGQQIGTVKVTLDGKVIAEAPLVAVAAVEQAGFFKRLWDSFWMWWESE
>NZ_CP040430.1|WP_088431881.1|4000263_4001532_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNIRWLVPSLIVFALAACSSAPKKPATAGHGGKSSGTLVQGRGSRPAHCPEGSPYAAAKEDLSTRGNYTAGGLYKPGVRDSTPDYIPNVACIPEPEVTAEERSAIGNKSPYVVLGKSYKVLDDTHDYVERGTASYYGAKFHGRLTSNREVYDMYQFTAAHKTLPLPSFARVTNLDNGESVIVRVNDRGPFHDGRVVDLSYAAAVRLGITQRGTGNVEVRALQPGESNLMAQKPSRRERRAAEAAAATAVASARPVPAPRASTDSDIDRLVNRLPTDGAPARGQPATTRGVASTAPDVAVSSLPPSAPVVRNSAPAPAVVASTAPRAVASAPVRAAAAAPSLSQQMVGAVMVQVASFSNRDNANRAMGQLSAAGIVGATISDIAAGGRTLFRLRVPASDHASAAELVGRIAGLGLGSPQIVKD
>NZ_CP040430.1|WP_012481291.1|4001528_4002674_-|lytic-murein-transglycosylase-B
MIRRTLACMLTLGLVACATQPKSPPSSPQASSTPRQPATKAHGPAEAAPEATAATAPPVDLTPVPFEVARARFIADTAKRYGLKPEQISSVLDQAQVRQPIIAAMSRPAERVKPWNEYRPMFISKARIDGGRAFLAEHRAELDRVQQRTGVPAEVIVAIIGVETSYGKNAGSHRVLDALYTLAFYYPRSGDPAKLEREVRRELFFRDELAKLFELGREEKLDITTLKGSYAGAMGMGQFMPSSYLDYAVDGNGDGRRDLFNSYDDVFSSIANYFVKKGGWVRGGQVAVPATLAPGREEFNPTEWMPTWSLADLAQRGYQPSTPVQPGATATPITLEGSTGKQYWLGFQNYYAITRYNLSKMYAMAVFQLSQAIAGQELPPA
>NZ_CP040430.1|WP_033834551.1|4003665_4004760_-|rod-shape-determining-protein-RodA
MEWKRLLGGCREVARTIDLPLLIALLILMGAGLAVLHSVSGPVAGQAARFAGGLASMWLLSRVSLLRLRAWTPAIYALSMLPLMAVYVIGTGKYGQRWLNLGVFYLQPSELLKLSLPLMMAWYLHRQPLPPSPRTVLTTTVLIGVPAVLILMQPNLGTATLVTASGVFALLLAGLHWGWVATGATGLAVAAPLAWFGLLRQYQKDRVLTFLDPSADPLGTGWNILQSRIAIGSGGWDGRGWGQGTQATLDFLPEYTTDFAFSVLAEEFGWIGVATVFALYLFVVGRCLWIAVHARDTHARLLAGSLGLAFFVYVLVNGGMISGLLPVVGIPMPLISYGGTSAVSLLAGIGLVMAVRGHRPVHGG
>NZ_CP040430.1|WP_005411073.1|4004896_4006009_-|rod-shape-determining-protein-RodA
MKVFLRWAGDMLRRFFSTLDWVLCLALGALMVIGLATLKSAGGDGLVMAQGARFAVGMAALWGISRVPILRIRSATPMIYAISMIPLLAVFVLGTGKYGRQWLDLKFFYLQPAELLKVSLPMMVAWYLHKMPLPPRFNTVLVALIIIGVPTGLVMLQPDFGTGVLIAASGVFVLLLAGLPWWWVGLGVGGVAAVAPVAWFWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGEGSQSHLNFIPEQTTDFAFSVLSEEFGWMGVALVLTLYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVRSHNPVHGGYG
>NZ_CP040430.1|WP_005411074.1|4006005_4008081_-|penicillin-binding-protein-2
MIPRRQVKNPHAEAEQFRRRAALGFLGVLVCLLGLGGWYFKLQVLDHDVYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDVTPDKVKDMDATLEGLAKIISISPEELEAFNKSRKARRKFLPVTLKLRMSDEEMARFAVDRWRFPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEILGEGNAALTHIGKSGLERYYEQQLRGKVGYEQVETNVQGRAIRTIGRVAAQSGADLRLSIDADLQRAMVAAFGDQEGSAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHADFKALNENPSRPQFNRLVLGGVAPGSTLKPLIGLAGLDSGVRRPEDKVLSTGMFYLPGTSRGWGDAHRGGHGWTDLRKSIAESVNTYYYKLALDLGIERFDHYMEYYGFGQPTGIDLTGEIGGILPSPAYKRKTRKEAWYPGDTVNISIGQGDWKVTPLQLARGVSALADGQLRTPHLVIQQRDGFDSDWTATPPGESKPVSPNPNNVQAVREGMMATMRPGGSGWRVAVGAPYVMAGKTGTAQVISRKGTAAVNPKSLPMHLRHRALFVGFAPVENPVIAIAVAVEGGGYGGSAAAPIARKVFDAYLLGKMPEGMQPLDSERGTTAIGATAFDNEDAGARQAGDLAAAQLGEHLVQVGAPAPEPAPAPQPGTPAAAALPATPRPTVAEPAR
>NZ_CP040430.1|WP_005411075.1|4008084_4008570_-|rod-shape-determining-protein-MreD
MSRLRDNPWVLPASLVVALLLGLLPLPALLQPLRPYWLALVLAYWVIETPERVGLGIAFASGVVADLLYGGVLGEQALRLVMLAFILQRFRARIRFFPMSQQMLAIGGLLFNDRIVSALVHILVGEPTLPWSYWWAPLLGMGLWPLVFVLLDAVRFGKRGR
>NZ_CP040430.1|WP_154267992.1|4008566_4009832_-|rod-shape-determining-protein-MreC
MPPYAGPPVASRSGDAASPLRLLAYLALAITLIVLDDQAGWLARLREQANSLVQPVWALAGLPGKLGNQVKDSAASHTQLVTENRELRNQLLLANARLTRLQTAALDNAQLRELLNVAERSGLDVQLAPILDIDLDPVKQRLVLDAGSREGVHVGQAVIDAGGLMGQVISVTGGTSTVLLLTDPDHAVPVTVARNGVRLIVYGRGDTLELRDIPLSAGVEVGDEIVTSGLGGRFPAGFPVGTITGLRPDDTHAFLVGELKPAAQLDRGRDVLLLRPGAAIRIPPELRLQLEETTPGGPATGATVPAGAAPATTTPAPVSSPVVPAAGRQPTTPQARTVAPASSLDPAAPVVPAAGRQQPSSQTRTVAPASSLDPAAPVVPAAGRQQPSSQTRTVAPASSLDPAAPVVPAAGRQPTTPEAQR
>NZ_CP040430.1|WP_005411077.1|4009953_4011000_-|rod-shape-determining-protein
MFKKLRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQDRAIGGTRSVAAVGAEAKQMLGRTPGHITTIRPMKDGVIADFTYTEAMLKHFIKKVHKSRVLRPSPRVLVCVPAGSTQVERRAIKESAEEAGARDVYLIEEPMAAAIGAGMPVTEARGSMVIDIGGGTTEVAVISLNGIVYSASVRIGGDRFDESITNYVRRNHGMLIGEATAERIKVELGCAYPQAEVQELEISGRNLAEGVPKMIKISSNEVLEALHEPLSGIVSAVKLALEQTPPELCADVAERGIVLTGGGALLRDLDRLISEETGLHVQVADDPLTCVARGGGRALELVDMHGNEFFAPE
>NZ_CP040430.1|WP_005411078.1|4011283_4012222_+|carbohydrate-kinase-family-protein
MSALICGSLAFDTIMVFPDQFKNHILPDKVHILNVSFLVPRMRREFGGCAGNIAYNLHLLGGQPIPMGTVGSDFGPYREYFEGLGIDLSRVRVIDELFTPQAFITTDHDNNQITAFHPGAMMRSYENHVRGVPGVTLGLVGPDGREGMIQNAQEFHEDGIPFIFDPGQAMPLFNGPELRAFIDQADYVVVNDYESNLLQERTGWDEKEIVSRVKAYITTRGPKGAVIHTPEKSYDIPPAHERRVVDPTGCGDAFRAGLIYGIQKGYDWLTIGRMGNLMGALKVEHPGTQNQRFTFDEFNEQFKQQFGYALGA

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Crispr_ID: NZ_CP040430_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_13

4204888-4204972

Orphan

Consensus_repeat	Method
GTAGATCCACGTCATGCGTGGATGGAAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040430_13

>merge|NZ_CP040430|13|4204888-4204972|CRISPRCasFinder
GTAGATCCACGTCATGCGTGGATGGAAGCCCGGCAGAATCAGCCGTCGCCCGCCAGTAGATCCACGCCATGCGTGGATGGAAGCC

>NZ_CP040430|13|11|4204888-4204972|CRISPRCasFinder
GTAGATCCACGTCATGCGTGGATGGAAGCC	CGGCAGAATCAGCCGTCGCCCGCCA
GTAGATCCACGCCATGCGTGGATGGAAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_088431081.1\|4196588_4197416_-\|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein	unknown	unknown	gnl\|CDD\|379346
NZ_CP040430.1\|WP_033834058.1\|4203617_4204385_+\|DUF3426-domain-containing-protein	unknown	unknown	gnl\|CDD\|378759
NZ_CP040430.1\|WP_088431075.1\|4211003_4212587_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP040430.1\|WP_088431073.1\|4212648_4213932_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_CP040430.1\|WP_005411253.1\|4199688_4201056_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236307
NZ_CP040430.1\|WP_088431071.1\|4214010_4214343_-\|DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225495
NZ_CP040430.1\|WP_088431069.1\|4214326_4214716_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368831
NZ_CP040430.1\|WP_005411260.1\|4205971_4206601_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP040430.1\|WP_005414654.1\|4204979_4205975_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|226955
NZ_CP040430.1\|WP_005411251.1\|4198695_4199139_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235443
NZ_CP040430.1\|WP_012481409.1\|4202654_4203575_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_CP040430.1\|WP_005411252.1\|4199198_4199678_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
NZ_CP040430.1\|WP_032967023.1\|4201524_4202490_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_088431079.1\|4207048_4208377_-\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|350376
NZ_CP040430.1\|WP_005411264.1\|4210162_4210780_-\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NZ_CP040430.1\|WP_005411254.1\|4201153_4201528_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_033834056.1\|4197582_4198311_+\|DOPA-4,5-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|378079
NZ_CP040430.1\|WP_088431077.1\|4208376_4210128_-\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|371922
NZ_CP040430.1\|WP_005419706.1\|4204499_4204775_+\|DNA-binding-transcriptional-regulator-Fis	unknown	unknown	gnl\|CDD\|179020
NZ_CP040430.1\|WP_033834060.1\|4206614_4207052_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_088431081.1\|4196588_4197416_-\|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein	gnl\|CDD\|379346	pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase. This domain includes the enzyme Phosphoenolpyruvate phosphomutase (EC:5.4.2.9). This protein has been characterized as catalyzing the formation of a carbon-phosphorus bond by converting phosphoenolpyruvate (PEP) to phosphonopyruvate (P-Pyr). This enzyme has a TIM barrel fold.	1.35603e-70
NZ_CP040430.1\|WP_033834058.1\|4203617_4204385_+\|DUF3426-domain-containing-protein	gnl\|CDD\|378759	pfam11906, DUF3426, Protein of unknown function (DUF3426). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.	2.27211e-33
NZ_CP040430.1\|WP_088431075.1\|4211003_4212587_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP040430.1\|WP_088431073.1\|4212648_4213932_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_CP040430.1\|WP_005411253.1\|4199688_4201056_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
NZ_CP040430.1\|WP_088431071.1\|4214010_4214343_-\|DNA-binding-transcriptional-regulator	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	2.98662e-32
NZ_CP040430.1\|WP_088431069.1\|4214326_4214716_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368831	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system. RelE is a family of Gram-negative bacterial antitoxins of the RelE/RelB toxin-antitoxin system. Its cognate antitoxin is family RelB, pfam04221.	1.55011e-46
NZ_CP040430.1\|WP_005411260.1\|4205971_4206601_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.50712e-30
NZ_CP040430.1\|WP_005414654.1\|4204979_4205975_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|226955	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only].	9.66302e-131
NZ_CP040430.1\|WP_005411251.1\|4198695_4199139_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	7.26695e-92
NZ_CP040430.1\|WP_012481409.1\|4202654_4203575_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	1.01473e-121
NZ_CP040430.1\|WP_005411252.1\|4199198_4199678_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	4.19854e-78
NZ_CP040430.1\|WP_088431079.1\|4207048_4208377_-\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	gnl\|CDD\|350376	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases. This subfamily is composed of uncharacterized bacterial and plant dual-specificity protein phosphatases. DUSPs function as a protein-serine/threonine phosphatases (EC 3.1.3.16) and a protein-tyrosine-phosphatases (EC 3.1.3.48).	3.30145e-42
NZ_CP040430.1\|WP_005411264.1\|4210162_4210780_-\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	1.28662e-19
NZ_CP040430.1\|WP_033834056.1\|4197582_4198311_+\|DOPA-4,5-dioxygenase-family-protein	gnl\|CDD\|378079	pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family. This family of proteins are related to a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.	2.98134e-34
NZ_CP040430.1\|WP_088431077.1\|4208376_4210128_-\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	gnl\|CDD\|371922	pfam12147, Methyltransf_20, Putative methyltransferase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases.	1.15615e-178
NZ_CP040430.1\|WP_005419706.1\|4204499_4204775_+\|DNA-binding-transcriptional-regulator-Fis	gnl\|CDD\|179020	PRK00430, fis, DNA-binding transcriptional regulator Fis.	5.29939e-52

>NZ_CP040430.1|WP_005419706.1|4204499_4204775_+|DNA-binding-transcriptional-regulator-Fis
MNAVLSRPDNSRGAPRPPLREHVAQSVRRYLRDLDGCDADDVYEIVLREMEIPLFVEVLNHCEGNQSRAAAMLGIHRATLRKKLKEYGISA
>NZ_CP040430.1|WP_033834058.1|4203617_4204385_+|DUF3426-domain-containing-protein
MSEPNPPRRPLATFLRTAPEGSPVPATDARTQEPEEHASPAMQVPAGPAEAAHVAAEMQHDDAPVIVDDIAAIASAPVAVPATTAAVDAPSFLGSARPRSLPAPRWHWLLVAGLALLLVLQSVLADRARLAADAGNRAWLGTLCGLLRCSLPAWHEPTAFTMTSREIRPLPGQAGVLQVQASIRNDARWAQAWPDLRLSLSDADGRVIGSGVFTPAQYLGENPGAALLEPGQSARVAFRVQEPAASTVAFTFDFL
>NZ_CP040430.1|WP_012481409.1|4202654_4203575_+|50S-ribosomal-protein-L11-methyltransferase
MPFLELTLRCTEATQPRYENALEDVGALAVTLLDAEADTSNEQAILEPGVGETPLWDTLVLSALFPADSNALLLLAALEAFDPELDWSSGSFRAVEDEDWERAWLDQFQPMAFGSRTWIVPWNHELPEAAQAADAAVVRLDPGLAFGSGTHPTTALCLRWLDQLAVDGLLQGQRVLDFGCGSGILALAALKLGAAEAIGVDNDPQALVATADNAERNGEQARMHVYLPPDEPVATYPIVVANILASALDALAELLAARVAAGGRIALSGILHGQEGELLQRYAEWFDDLQATQDGDWMRITGVRRA
>NZ_CP040430.1|WP_032967023.1|4201524_4202490_-|hypothetical-protein
MAFAPTLKTWLLVLPAVAVLGVAGYRASGHAGSVPVTAGELPTAQVAADDAAPLPVVPEALARRLAAFERGNALPSGLPLDLRADIEDATDLYAYAQRLRVQADDGNHEARWMLSRVYDYCAQYAIDPGGYRLDNNVLAGLGLTAAPAMVQARERVAQRCGGFVPGDKLGSALVLAERRKAATQGNLAAEASLFAEGEPLNDSPEYRRDLVERVRTSRDPEAFMAIAPGMGVRAAGDQALTGLVAGEQLSELAWRVAACELGLPCGADSVLVNSFCANGGICSQDGTQDFRDFVYDAAVSRQGAGKMKQWIKRLVGKRGGQ
>NZ_CP040430.1|WP_005411254.1|4201153_4201528_-|hypothetical-protein
MNYRRFLHGAKFWFWVALFVAYSAGAVGLLMIDTYEDRYRHLSKVELTTVKAQEDVRRVGASQVAAVYRAQSGMPFASLPAGSTFQVVWPDGSTETMVIVDPSSPNGVRPLANSQIPAEAADKR
>NZ_CP040430.1|WP_005411253.1|4199688_4201056_+|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MLDKVVIANRGEIALRILRACHTLGIRTVAVHSTVDRNLKHVAMADESVCIGPAPSPQSYLNIPALIAAAEVTDAQAIHPGYGFLSENADFAERVEESGFIFIGPKADTIRMMGDKVEAIRAMKSAGVPCVPGSGGPLGDDIVANTKIAREIGYPVIIKAAGGGGGRGMRVVHAEASLKTSIETTKSEAKAAFGNGEVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGITAEQREQIGKVCTEACVRIGYRGAGTFEFLYEDGRFYFIEMNTRIQVEHPVTEMVTGIDLVAEQLKIAAGQKLSIKQSDVVLTGHAIECRINAEDAETFVPSPGTITGFHPPGGPGVRVDTHIYSGYRVPSNYDSMIGKLIVHGPDRETAIARMRVALSEMVVDGIKTNIALQQRIMRDKGFQAGGQNIHYLEKRLAERKNKPIALT
>NZ_CP040430.1|WP_005411252.1|4199198_4199678_+|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MDLRKIKKLIDLLEESNLAEIEIKEGEESVRLSRAPVAGYAAPVAAPVYAAPAAPAPQAMPMQSPTEASTGGTAKPGPALPEGHVLRSPMVGTFYASSAPDKPAFVTVGQQVKEGETLAIIEAMKMFNPIEADTSGTIVAILGENGQPVEFDQPLFVIG
>NZ_CP040430.1|WP_005411251.1|4198695_4199139_+|type-II-3-dehydroquinate-dehydratase
MAKLLVLHGPNLNLLGTREPEVYGHTTLADIDQALASQASAAGHAVESLQSNAEHVLVDRVQAARDDGTAFILINPAAFTHTSVALRDALAAVAVPFIEIHLSNPHTREPFRQHSYFSDKAVGVVCGFGADSYRYAMDAALLRVSAT
>NZ_CP040430.1|WP_033834056.1|4197582_4198311_+|DOPA-4,5-dioxygenase-family-protein
MHPDPQTLTDAGDDDAHWADLLSPARRRLIASAGLAAGGLASASTAAAAPRGNDAVNTTEPGRPGFRAIVPPAPEGRSPWGQATASEPTPRPASVRPGEATLPVTPRAYTDIKSYHAHIYFDEDSFEKAALLRRWAAERFPVELGNWNLEPRGPHVTPSFYFGFTNDLLPVLVPWLQLNSLGLTILIHPNTGDGRADHLYYALWVNRAQPVNAYNWPAPKPGEREPLEEVFPNVVPTVPLET
>NZ_CP040430.1|WP_088431081.1|4196588_4197416_-|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein
MISPDADTQQKRAFFRQLHAQGCFVLPNPWDVGSARYLQRQGFQALATTSAGCAWSEGRPDGAVSLQATLAHLRVMAAATPLPLNADFGDGFGATPQAVQEAVAAAIDTGIAALSIEDASGVADAPLRPIDQAVERLRAARAAIDRAGGDVLLVGRAENFFVGVPDLQDTLQRLRAYAEAGADVLYAPGISTREQISAVVAAAGSKPVNLLVGGPTSLSLQDIAALGVRRVSLGGALARAAWGGLMQAAQPIVQDGRFDGLQQAASGAALNALFR
>NZ_CP040430.1|WP_005414654.1|4204979_4205975_-|phosphatidate-cytidylyltransferase
MSFLIDVSGDLAAQSVGQQTGLLFAGVGAVLVLATLVAETLRWRQRGRPSAVIANLVSRIRAWWVMAIVVGLALFFGRAGVIVLFAIISLFALREFITLAPTRSGDYYALLAAFYIVLPWQYYLVWIDWYGMYTLLIPVYAFLFLPILSTIGGDTTHYLERTAKVQWGLMICVFCISHVPLLLNLHVPGHDPSRNVLLFAFLVIVVQSSDVLQYIWGKLLGKHLIAPKLSPSKTVEGFVGGVLSASALGAALWWITPFTPLQAFGLSLLINLMGFWGGLVMSAIKRDRGIKDWGHMIEGHGGMLDRLDSVCFAAPVFFHVVRYYWKAGGGG
>NZ_CP040430.1|WP_005411260.1|4205971_4206601_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MFAELIARACSGAIHVVTGARALWIGCAPSSERRVYYGNHASHGDFVLIWSSMPPALRRQVRPVAAAEYWQRDGLRRYLIDAVFNGVLVEREAGHRQQDPLQALRDAVDEDCSLILFPEGTRNVGDEPLLPFKSGIYHLARQRPELEFVPVWIDNLKRVMPKGRFLPLPLLCTATFGTPLRLQADEDKAAFLARSRQALLDLAPNGGRA
>NZ_CP040430.1|WP_033834060.1|4206614_4207052_-|hypothetical-protein
MSTVPDLATMQLLLRQGRWPACLSLGLLLVALLLLGTEPGLAMIAAGLLLASMSAGVAQTYHAWRVALDASLLQLLRDERLDGDAAARRTDQLLHDSGLRRASPDAPLRGWDARWAGMRRLLLRQYLLTAVQFALLVLAVLWPQT
>NZ_CP040430.1|WP_088431079.1|4207048_4208377_-|phosphatase-PAP2/dual-specificity-phosphatase-family-protein
MATLAATPLAAEGRPWRRALLWLALLGPFFFASYGFANWMAGRHATLPVMAFAWETRIPFVPWTIVPYWSIDLFYAISFFLCRHRLELDRHALRLFSAQVIAVACFLLWPLRFSFERPEIGGVFGWLFDVLLGFDKPFNQAPSLHIVLLIVLWVKFAQYLHGVWRGVLHVWALLIGVSVLTTFQHHFIDIPTGLLAGWLCVWLWPEQGTPPLRAWHTARDARRWRLAALYLLGAAVLLVPVVLLRGAALWLLWPVASLLLVALAYAGLGTAVFQKRADGRLTMAARWLLAPYLGAAWINSRLWTRRAPQPVPVLDGVWLGRIPNGALPSPLGGVVDACAELSCRAQGAAYASVPMLDLVVPAPEQLREAAEAIERLHAHGPLLVCCALGYSRSAASVATWLLRSGRAADADAAVAIVRAARPGIVLGTAHLRAITDAAGVRA
>NZ_CP040430.1|WP_088431077.1|4208376_4210128_-|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase
MRQAQEREFHSFDQVPLFYRYWAGTTATPATKAIVLLHRGHEHSGRVTHLVDELDLPDTAFFAWDARGNGRSPGARGDAPGFPALVRDLDSFIAHIGAEHGIAVEDIVVIAQSVGAVVAATWVHDYAPRLRALVMASPAFKVKLYVPFARPGLALMQKLRGNFFVNSYVKPQWLTHDPARVESYRTDPLITRPISVRVLLGLYEAADRIVADAQAISVPVQLLVSGSDFVVHRGPQDRFYERLSSPIKERVHLPGFFHDTLGERDRAPALARIRSFIQARFAEPLRELSRRDAHRHGPTFEESEILAWPPERNSMADLRWRVVRGGLRFGGTLSEGIALGLRTGFDSGSTLDYIYRNEARGKGPLGRMVDRNYLDAIGWRGIRVRGQHLQELLRDTAQRLRGQGTPVRVLDVAAGHGRYVLEALGQGEQRADRIVLRDFSDLNVTQGQALIERLGAADIARFEQGDAFDPAQLAKVDPVPTLAVVSGLYELFPDNDAVLRSLQGIAATVPAGGYLAYTGQPWHPQLEFIARALTSHRGGAAWVMRRRTQQEMDELVRLAGFEKVAQRIDDFGIFTVSLARRTA
>NZ_CP040430.1|WP_005411264.1|4210162_4210780_-|CDP-alcohol-phosphatidyltransferase-family-protein
MSIYALKGRFQDLLRPAVRGLYRMGITANTVTVAAAVVSLLVAAAVWCCAPAQPLLYLLLPLWMLLRMALNAVDGMLAREFGQQSRLGAYLNELCDVIADAALYLSLLSVPGVRPEMLWLLAWTAALSEYAGVLGLMVGASRRYDGPMGKSDRAFVIGALGLLLAFEWVGAMTVTGVAAVMAVLCVLTMVNRVRRGLREAAVSPN
>NZ_CP040430.1|WP_088431075.1|4211003_4212587_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MTADLLPVRRALLSVSDKTGLVELATALAARGVELLSTGGTAKAIRDAGLAVKDVADVTGFPEMMDGRVKTLHPMVHGGLLGRSGLDDAVMAEHGIGAIDLLVLNLYPFESVTAKADCTLADAVENIDIGGPAMLRSAAKNFARVAVATDPSQYAELLASLAANDGQLSAATRFAFSVAAFNRVAQYDAAISNYLSAVTATDAAVPARAKYPAQMNSTFVKVMDLRYGENPHQSGAFYRDLYPVPGTLATFQQLQGKELSYNNLADADAAWECVRQFDAPACVIVKHANPCGVAVGAGNGDAYELAYATDPTSAFGGIIAFNKPLDAATAKVILDRQFVEVLIAPDYEPAALEYAQKKANVRVLRIPHGDGLNNFDSKRVGSGLLLQSSDNRGMTRDELKVVSKLAPTDKQFTDLLFAWKVAKFVKSNAIVYAKDNRTIGVGAGQMSRVYSARIAGIKAADANLVVEGSVMASDAFFPFRDGIDAAAAAGIKAVIQPGGSMRDAEVIAAADEHGLAMVFTGVRHFRH
>NZ_CP040430.1|WP_088431073.1|4212648_4213932_+|phosphoribosylamine--glycine-ligase
MKILVIGSGGREHALAWKLARSSRVTEVIVAPGNAGTASEDKCRNVAVKVTDIDGLLALAQAEGVALTVVGPEVPLVAGVVDRFRAAGLRIFGPTAAAAQLEGSKAYAKDFLARHNIPTAFYAVHTDVDAALAYIREKGAPIVVKADGLAAGKGVIVAMTLAEAEDAVRDMLSGNAFGDAGARVVIEEFLDGEEASFISMVDGVHALPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTPEVHARVMREVVNPTVQGMIADGIPFTGFLYAGLMIDASGAPKVIEFNVRFGDPETQPVMLRLQSDLVELVEAAIDGRLDQVEAQWDVRPSLGVVLAARPYPEAPITGDVISGLDDVPASAKVFHAGTALDAQGHVVSAGGRVLCVAALGDSVRDAQANAYAGVAKVTWANEFHRNDIGWRAIAREG
>NZ_CP040430.1|WP_088431071.1|4214010_4214343_-|DNA-binding-transcriptional-regulator
MAKTVEHRRAKSAILDAVHEGAAGLYASGFIDKRRMSMYEALCLEPVPEYSSAQIRALRTSLELSQPVFAGVLNTSVSTVRSWEQGEKKPSGPSLKLLNLIDRKGLEAVL
>NZ_CP040430.1|WP_088431069.1|4214326_4214716_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MIMSRVFRTRSFNRSTRRSSLTDRALCRAVVEMRQGLIDADIGGGLLKKRVALPGRGKRGSARVIVATKVGRYWFFLFCYEKSARATISSAERDALQLYASEFLGMSPAQLDRAVICGELREICHGKDG

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Crispr_ID: NZ_CP040430_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_14

4345760-4345863

Orphan

Consensus_repeat	Method
GTGTGCCAACCAAGGTTGGCACCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040430_14

>merge|NZ_CP040430|14|4345760-4345863|CRISPRCasFinder
GTGTGCCAACCAAGGTTGGCACCTATCAGGGTGAGTGGGGCCTGGTAGAGGCCGACCTTGGTCGGCGCTTGCCGATTGCGTGTGCCAACCAAGGTTGGCACCTA

>NZ_CP040430|14|12|4345760-4345863|CRISPRCasFinder
GTGTGCCAACCAAGGTTGGCACCTA	TCAGGGTGAGTGGGGCCTGGTAGAGGCCGACCTTGGTCGGCGCTTGCCGATTGC
GTGTGCCAACCAAGGTTGGCACCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_088431816.1\|4342648_4343035_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_049451164.1\|4340952_4342452_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NZ_CP040430.1\|WP_049441989.1\|4349744_4351511_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173789
NZ_CP040430.1\|WP_088430867.1\|4333833_4334694_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP040430.1\|WP_088431349.1\|4335329_4335686_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_012481496.1\|4352192_4352873_-\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
NZ_CP040430.1\|WP_012481491.1\|4346892_4347543_+\|exopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|368723
NZ_CP040430.1\|WP_088431818.1\|4343143_4345462_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP040430.1\|WP_006388655.1\|4334690_4334984_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP040430.1\|WP_088431820.1\|4345909_4346743_-\|sugar-phosphatase	unknown	unknown	gnl\|CDD\|182509
NZ_CP040430.1\|WP_088431822.1\|4347690_4349001_-\|sorbosone-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|225044
NZ_CP040430.1\|WP_005411473.1\|4352884_4353217_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|131894
NZ_CP040430.1\|WP_005411474.1\|4353218_4353854_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|131889
NZ_CP040430.1\|WP_088431353.1\|4339931_4340690_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143587
NZ_CP040430.1\|WP_088431347.1\|4332825_4333428_-\|DUF998-domain-containing-protein	unknown	unknown	gnl\|CDD\|377627
NZ_CP040430.1\|WP_088431351.1\|4337132_4339832_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_088431826.1\|4353850_4355827_-\|cytochrome-o-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131890
NZ_CP040430.1\|WP_088431824.1\|4351510_4352089_+\|DNA-breaking-rejoining-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_154268005.1\|4336425_4337091_+\|DUF1629-domain-containing-protein	unknown	unknown	gnl\|CDD\|369521
NZ_CP040430.1\|WP_005411469.1\|4348993_4349434_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226695

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_049451164.1\|4340952_4342452_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP040430.1\|WP_049441989.1\|4349744_4351511_+\|S8-family-serine-peptidase	gnl\|CDD\|173789	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.	2.01719e-105
NZ_CP040430.1\|WP_088430867.1\|4333833_4334694_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.37917e-56
NZ_CP040430.1\|WP_088431822.1\|4347690_4349001_-\|sorbosone-dehydrogenase-family-protein	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	1.69323e-96
NZ_CP040430.1\|WP_012481496.1\|4352192_4352873_-\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	4.57315e-51
NZ_CP040430.1\|WP_012481491.1\|4346892_4347543_+\|exopolysaccharide-biosynthesis-protein	gnl\|CDD\|368723	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD. Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion.	1.72196e-42
NZ_CP040430.1\|WP_088431818.1\|4343143_4345462_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.3212e-21
NZ_CP040430.1\|WP_006388655.1\|4334690_4334984_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	5.76383e-05
NZ_CP040430.1\|WP_088431820.1\|4345909_4346743_-\|sugar-phosphatase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	8.2401e-179
NZ_CP040430.1\|WP_005411473.1\|4352884_4353217_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|131894	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	3.92143e-34
NZ_CP040430.1\|WP_005411474.1\|4353218_4353854_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	gnl\|CDD\|131889	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	4.05627e-101
NZ_CP040430.1\|WP_088431353.1\|4339931_4340690_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	1.37175e-30
NZ_CP040430.1\|WP_088431347.1\|4332825_4333428_-\|DUF998-domain-containing-protein	gnl\|CDD\|377627	pfam06197, DUF998, Protein of unknown function (DUF998). Family of conserved archaeal proteins.	4.75914e-08
NZ_CP040430.1\|WP_088431826.1\|4353850_4355827_-\|cytochrome-o-ubiquinol-oxidase-subunit-I	gnl\|CDD\|131890	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	0
NZ_CP040430.1\|WP_154268005.1\|4336425_4337091_+\|DUF1629-domain-containing-protein	gnl\|CDD\|369521	pfam07791, DUF1629, Protein of unknown function (DUF1629). This family consists of sequences from hypothetical proteins thought to be expressed by two members of the Xanthomonas genus. The region in question is 125 amino acid residues long.	3.32747e-31
NZ_CP040430.1\|WP_005411469.1\|4348993_4349434_-\|hypothetical-protein	gnl\|CDD\|226695	COG4244, COG4244, Predicted membrane protein [Function unknown].	9.28321e-12

>NZ_CP040430.1|WP_088431818.1|4343143_4345462_-|TonB-dependent-receptor
MNTPPTTRLALAIIAAIAAPAYAAETHDAAHDSPTTLNALQVIATPRGAAVAPTQVVGPNRYIIKAEDLDAMVTGNNGLAMLKQVPGASYTATDGLGLDISATSLFVRGFRMNEMGITFEGVPLNDNGFLSLTGTSVVNVGVPDGIGAITVSPGGAPVSVFSSSVNGGSLEYRLRELQDTPSLRVKQGVGSNNTLVTTVSGQSGQLGEHGPKVLVDLQRVSADKYQGGGTQHFLRGDLKLQQDVAWGDFTVFLSDSKAKVWGYNNISFDMIRKLGWKADIFYPDYAWAYYVASPENADKSCGAYTCGELSELIPYDTGQTTRDRVSSINHRFQISPALSGNVQLYNANSHTQATLTDPTVPSPNGAPFSEQVQTPRLNRLGGMLNLQFEAGAHTFTAGFWQEKSKAAAKTEWYQQPLLGEGPPLKATGPFDVYGPAFKTDNASSWVTRSRQFYLQDDIVLNDTLKLGVGFKAVDFRTSGGGLGDAKDRPVNGTLRAKSNFLPHVSLFWSPTESTDAFIDLANTMNGYRVAQRGNIGYTASAWTITDQEEFDRVAGTLRPEKNWNLTVGASHRFDRLTITGDVFYNDIRNRLLSAAIGTQFAQINTVRLMPKMHVIGADLGITADLSDHLQFYQGVAVARSYYDSDFVVGDTVYPIKGNAQPGYPQISLVSDLSAHFGDWRFGATSTSYLRQPFTYENDIRVPTFWQVNTYAAYRFGADSAVPGLELRLDVSNLFNRHNIGTATIAGSSFSGDYQTLQRSAPRQLMLSTSMAF
>NZ_CP040430.1|WP_088431816.1|4342648_4343035_-|hypothetical-protein
MLLGHPVGMAQYNPRTPLFGIRGPGRPRKALSVAPVIDLQAEYQFWHVYERVVRPLPGGGLRLAWLVCQKVYRDRWQHPDDSDEAALSRVLFGGNMTADRASELAELHALVSRRVALLAKRARVDSAA
>NZ_CP040430.1|WP_049451164.1|4340952_4342452_+|YifB-family-Mg-chelatase-like-AAA-ATPase
MSLALVHSRARAGVDAPLVRVEVHLSGGLPVTQIVGLAETSVRESRERVRAALLCARFDFPQRRITLNLAPADLPKEGGRYDLAIALGILAASGQVDPQSLLQYEFLGELGLTGELRPVAGALPAAIAAAEAGRILVVPPGNAAEAALAEHADVRVARTLLECCAGLGNPRLLPPVERVDTTPLPLPDLADVRGQAHARRALEVAAAGGHHLLLIGSPGCGKTLLASRLPSLLPDTEETEALQLAAIASVSGEGLDPRRWRQRPFRAPHHSASAAALVGGGNPPCPGEISLAHHGVLFLDELPEWNRSALETLREPLESGHIRIARAARSVQYPARFQLVAAMNPCPCGWAGDRSNRCLCSDERINRYRARVSGPLLDRIDLHIGVTRMDAVELRESTPLGEPSAAVRARVEAAHARQQARGALNAHLPPAALRACTKLSEADQDLLEQAIERLQLSARAMHRILRVARTISDLAGCETIQTAHLAEAIGYRQLDRGKP
>NZ_CP040430.1|WP_088431353.1|4339931_4340690_-|carbon-nitrogen-hydrolase-family-protein
MKIVAAQMRSAPGDIDGNIERHVHFIERAASCGGAAVLFPEMSLTGYEPRLAEQLAMTADDVRLEVFQSLSDRHQILVAVGGPYRGNDRPEIGMFVFRSGQAPAVYTKQMLHADELPYFKAGTTSLSVTLGEEILVPAICFESLQMESALRAKDAGATVYVASVAKNMIGMERAHRHYATVARELGMIVLACNGVGHADGFEMTGGSAAWDNSGALRCSAGTGDEALVVYDLADQSGSAVTLPAMGTLGSAG
>NZ_CP040430.1|WP_088431351.1|4337132_4339832_+|hypothetical-protein
MADTPVFQGHHLIEQNAFEQSQLLKSLARSGHFTLHGSDNILNLPANPALATRLGISPHSGGPLSAYSDQLKFVLDDLAETYDGRALLAKDSAPDVRAAAAERMGARIQNLEFTLRAGILNGDLVTNTPENMTPAEANARIRTFFADLDGYQRTHAAQIAELKTLNPSELRWRGVIHSEANVTAALDAIDQSGNSTLSERWGGRASLGTAIQEANQGGRLPLSEHTAARVRTAFNPEMPLTIVRPGPATTAPELAGSAGRAGAAEGAAEAATARGQITGARVLGAAGVAALAVDFAITGHRVAELHSEGNNAGAKSAATHFVGRTAGGFGGGFLLGAGYGLFTGSWTGPGALATGLLGGVAGGFGGEYWAQYQDKKAVYTQVDRSGNEWSRDPEDAKGTWSRSVRTPQPDGSYRETTMVAGGRLLDELNYKAANDSYSLGMANLPKPQNPFKLDAGGESTPPREPFETNRHYVRNPHNGEWNLSIHAMIDGRVPFDYSVPVSPEKSGQLERESQRIIAQNALNTPEALAARYQVAFNQYNWHEFATIEPVPEVITNALTQTQPLRASNGEKYTQDPNGQWQTPGWLYGTNPAEGSIIEELNRTRQSQQAGVQELTSMADIARANPTPTEYGLRSQVVDAYRSAGIVRSAEEIDDAVAAVAQDHARAVPDFGTFMLQVQKDGSLATLAGKDDERMQIVCVTTPQEIAQAHVQRSTAEQQPADALPRAPTSPEPAPSASPPHTSRPATQHDADVDRHHGTALRPDGSGLLEQLRSSVAMLDEKNNKPWDQSSDRLLASAYRLAAEAGFKPSDKVDMALNEATEAHAAGSTLFVTRSGPGASSDPAANRVQMPTQEALAVAPEQQYAAANRSLGAQDREQSQQLAQAQERQQEESRQGPRLG
>NZ_CP040430.1|WP_154268005.1|4336425_4337091_+|DUF1629-domain-containing-protein
MMEAPVTESTATEVSAEAASHKGEFFLIDAGLLSNGGVPGIEIANEDKLIDPGMNVVSRPDGTPGQYPERPHLVHVPEKGAMPRDLEELAGIWIVSEPLKQLFEQMDPQAFAFVACDFSLADGSPGPQYYLGNVLRRLDALDEASSRVRIKLDHNYQTGEEEKLYSLVGGASLVFKQDVVGDAHIFRQDRMGAPPICDRAMFDALNAANFSGVRLRDVADL
>NZ_CP040430.1|WP_088431349.1|4335329_4335686_+|hypothetical-protein
MTTPHSPPPRPIQEAPSPAPALDPNSLIAILHAIGAGASADGQPWPERHHLRSRQMALSDADCALTGQRIVQEILLAAERTRQNGEPEQYVGDRVMEGLVMADLALTAFIHERMRPKD
>NZ_CP040430.1|WP_006388655.1|4334690_4334984_-|transposase
MSRITRRSYTDEFKHQAVELAESLGPAAAARQLEMSVKTLANWLDAVRAGRSLTSEARRPATDLESEISRLRAENANLKMEREILKKAAAFFARESK
>NZ_CP040430.1|WP_088430867.1|4333833_4334694_-|IS3-family-transposase
MRYAFVASQRTHYPTRLLCRVLGVSVSGFHDYLRRQCAQTCDVDSALRTELRAIHVTSKRSYGRRRLVRALRARNHPVGHKRVARLMAEERIQGKTKGRFRPKSSGGSSQLAPNLLDRQFAPGTGPTAWVGDITYVPTRQGWLHLAVVISVQTRQVLGYSVSKRLTEELVVKAFANAWALHPQRPGLIFHSDRGGQYWGNEFRQLLQSHGVVQSMSRPGNCWDNAVAESFFATLKTEEAAEPYASREQASQSIAAYIHGFYNPTRLHSALGYHSPNNYARQLRAAA
>NZ_CP040430.1|WP_088431347.1|4332825_4333428_-|DUF998-domain-containing-protein
MSRRNRLLLSAGLVPLPWFLFWTTVAAVFAPGYNPLAQHASELLQAPTLASICGRIAALGSGVGFVAFSIGVWRESGRRIAVGAICWMIFGISMLTNGLWPMGHPMHGFYTIGIANIIAPAMSHIELSAWSANRRAYAVTAAVSVAGIVYLWLNVVGADPEGYRGLTQRLFSSINSLWPFLVALYLLRRGSSVLKAEPTY
>NZ_CP040430.1|WP_088431820.1|4345909_4346743_-|sugar-phosphatase
MDMGRRQSTIELVAIDMDGTLLDPAHRLTARVRQAIAQARALGVHIVLTSGRPVPGLAPYLHELGITGNDDYCIACNGGLVQRVGTRETVVEYPLSFDDFLFCEQVAREVGVHFQALDSQRMYTPNQDISYYTVADSHLSRMPLSYRRVEDMDPSMSFIKLMMIDEPEVLDAAIARLPSELTERFAVLKSAPYFLEVFDHRAGKGPSLQKLAEHLGIDRVNVMAIGDQENDLTMLQYAGTSVAMRNAIDAVKAVARFETSSNADDGVARAIERFVLQ
>NZ_CP040430.1|WP_012481491.1|4346892_4347543_+|exopolysaccharide-biosynthesis-protein
MTYRAPETDDSAPLAQQIEQMIDELPGDQVRVGTLLSALGDEGLLLIVILLSAIFIIPVSIPGLSTVFGASILLIGLSRVRNRPLWVPQKLARREIATDKLKANLGRALKWVHRMERLSRPMRLAVMVRSKKMMRLNNLMLVFATLLLMAPAGPIPFSNTLPALALMSFAIGFIQRDGAAVAAGYGFVVATVVYFGVLLGGMGFAAESVFSGFRAR
>NZ_CP040430.1|WP_088431822.1|4347690_4349001_-|sorbosone-dehydrogenase-family-protein
MAKHILPTVAALALAAALSACAGKAEYHPADQSGPQPPLPKPANFLMPPMQVPKGVGWADGQTPTVAEGLKIERIAANLQHPRRLLTLPNGDVLVVEGNGPGEEPVTTPKQWIAGKVKARSGKAGKGGNRVTLLRRTPGTNTWAQHVYIEGLHSPFGIQLIGDTLYVANTGNIMQYHYVPGETRMSDKGREFTDLPSTINHHWTKELLASRDGSKLYVGVGSNSNITENGLAVEYRRAVVLEVDVATRGSRIFASGIRNPTGLDWEPSTGTLWAVANERDEIGADLVPDYLTSVKEDGFYGWPYSYYGQHVDERVQPQRPDLVAKAITPDYAIGSHVAPLGLLFYTGQALPAQYHGGAFIGEHGSWDRSPLSGYEVVYVPFKDGKPTGRPQTVVSGFASKDEKTLMGAPVGMAMDAEGALLVADDVGDVVWRVSAK
>NZ_CP040430.1|WP_005411469.1|4348993_4349434_-|hypothetical-protein
MVNPLAQAHRGLGTTLFSLLNPIPFGFFVGALIFDAIYLNSAEVMWGKAAAWLITFGLLIAILPRLINLFAVWRRNGTATRIDRIDFFLNLVAVVLAIWNAFVHSRDAYAVAVPGTILSALTVALIALGLILLSLQPPVLQGGRHG
>NZ_CP040430.1|WP_049441989.1|4349744_4351511_+|S8-family-serine-peptidase
MKRHTQRSAPPRSARLALATALVLGSLAVTAQAQQADPLAGIQWHLLNTGQTVPADTLPVAGNDLNVDGLFRNGIRGQGVTIAIVDDGLQIAHPDLAANVAAVAGKNFTNGSNNPTPTNPDVDNHGTMVGGIAGAVGANNLGVRGVAPAATLKGFNPISRSALGNQQSNIEYAWWDGAESADVQVFNNSWGAGPGNPNLPLAYSENTIRSYEQALSGTRGGRGGIYVKSAGNNFNNASISQTQDVCTTDTKNRNTGCVPAGRDPRNNLFNVITVGAVRADGVRSSYSSTGSALWVSAFGGEYGLQAQYAPGLVARAYDPAIVTTDVTGCAQGSNKNTNRQNTLDSNLSAIDSTCNYTAKMNGTSASAPMVSGVAALVLEANPNLSYRDVKYILATTATRNHPNQPAVTLADGRTLVPGWTVNAAGRAYSNWYGFGVVNAARAVQVAENFQSLGALVDSGWRNTTRTVAIGNTSAAAARLTFQLANGARNIESVQLGFRVNHRNTRQLQFVLVSPSGTRSVVQPAFTAIGSGTGGAQSNFTSWDLLSSNAFLDENATGTWTLEVTDMGQAATAASRGNLEFFKIRVLGH
>NZ_CP040430.1|WP_088431824.1|4351510_4352089_+|DNA-breaking-rejoining-protein
MMKTTILLSTLAFAAMTSPAWAQSSGQTPPARTLSTVDAQELKASATGRSFDVGGTRFQLSPSTTVKQASGGQFTITPQAAATTSARTKRSLDGAAAAPADAGAGKFAAAVSRDGAPVVATSRVKVFFTDAASAQRAATATGGTVVKVSKASGQAIVEYPSVNAALDATTRLLSTAGIRATEPDVVQWEETK
>NZ_CP040430.1|WP_012481496.1|4352192_4352873_-|SCO-family-protein
MKGIAFPQRGLRLVAGLLLGLLAGCSAQSRMDFYSKDIACEELGQQWSMPDSHGTVRGPKDLQGQVTYLFFGFTSCPDVCPTTMVELSQVKHLMGKDADQLQVVFVSVDPARDTPEVARTYVEAFDPRAIALVGNEAQLAAMASDFKAFYEKEPGQVPDTYTMSHIAGGYVFDRQGRLRLFAPYGMPVEKLFSDVQRLLLEPAHPAAGNDALASCSRKHSDTLAAR
>NZ_CP040430.1|WP_005411473.1|4352884_4353217_-|cytochrome-o-ubiquinol-oxidase-subunit-IV
MAHVETSRAGNAHGSTKSYLIGFVLCALLTVVPFALVMNPVLSRPLTLFLLVGFAVAQILVQLVYFLHMDRKSEGGWNLASFVFTLVILFIIVALSVWIIWSMHYHMMIN
>NZ_CP040430.1|WP_005411474.1|4353218_4353854_-|cytochrome-o-ubiquinol-oxidase-subunit-III
MNLLTRPELASDTQAREDHHEHDHGHEQGGMKVFGMWVYLMSDLVLFGSLFASYAVLSTAYAGGPTGKDLFSLPFVMAETFLLLVSSITYGQAVLAMHRHDTSAVLRWLGVTFVLGASFIGMEIYEFSHLIHEGAGPSTSAYLSAFFALVATHGLHVASGLIWMAVVMHQVYRRGLTPTNITRVSCLSLFWHFLDLVWICVFTFVYLIGAF
>NZ_CP040430.1|WP_088431826.1|4353850_4355827_-|cytochrome-o-ubiquinol-oxidase-subunit-I
MLGKLTWEAVPLHEPIVVVTLAAMVLGGLALLGAVTYFKLWGPLWRDWFTTVDHKKIGIMYVVVALVMLVRGFADALMMRAQLAAAGPGSDGFLPPEHYDQIFTAHGVIMIFFVATPFVVGLMNIIVPLQIGARDMAFPFLNAFSFWIFVVGAALMMISLGVGEFAMTGWVAYPPLSGIEFSPGVGVDYYIWALQASGVGTLLTGVNLFITILRMRAPGMTLMKMPVFTWTVLVTSVIIIAAFPILTVALGALTLDRYLDFNFYTNTLGGNPMMYVNLVWAWGHPEVYILVLPAFGIFSEVTATFARKKLFGYKSMVGATLAIGILSFIVWLHHFFTMGSGASVNAFFGIMTMIIAIPTGVKIFTWLFTMYGGRVEFSVPMLWTIAFLVTFTIGGMTGVLLAIPGADFLLHNSLFLVAHFHNTIIGGALFGYLAGFAYWFPKVFGFTLNERLGKWSFACWVIGFYLAFMPLYMLGFMGMTRRMNQYDNPAWTPYLIAAFIGALFVFAGIILMLVQIYVSVRDRKRNLDLTGDPWNARTLEWATPSPPPFYNFAVVPKADELDAFHEAKKRGLPPPPKKYAPIHMPKNTGVPLILNIWILVLCFALVWHIWWMAAASFIAMIVTLIVRSYDEDVDYYVSSEEVARTEAASLAKLKEVRA

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Crispr_ID: NZ_CP040430_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040430_15

4633434-4633520

Orphan

Consensus_repeat	Method
CCCATGGGTAGTGCCGGCCGCTGGCCGGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040430_15

>merge|NZ_CP040430|15|4633434-4633520|CRISPRCasFinder
CCCATGGGTAGTGCCGGCCGCTGGCCGGCATCCCCATCCGATCAGGTCATGAACCCCCCATGGGTGGTGCCGGCCGCTGGCCGGCAT

>NZ_CP040430|15|13|4633434-4633520|CRISPRCasFinder
CCCATGGGTAGTGCCGGCCGCTGGCCGGCAT	CCCCATCCGATCAGGTCATGAACCC
CCCATGGGTGGTGCCGGCCGCTGGCCGGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040430.1\|WP_088429051.1\|4629406_4630678_-\|ergothioneine-biosynthesis-protein-EgtB	unknown	unknown	gnl\|CDD\|274581
NZ_CP040430.1\|WP_012481667.1\|4640505_4640961_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP040430.1\|WP_088429043.1\|4624147_4625335_+\|benzoate/H(+)-symporter-BenE-family-transporter	unknown	unknown	gnl\|CDD\|281578
NZ_CP040430.1\|WP_088430151.1\|4642190_4643660_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_CP040430.1\|WP_088429055.1\|4632112_4632505_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|235261
NZ_CP040430.1\|WP_005411696.1\|4641070_4641280_+\|DUF1656-domain-containing-protein	unknown	unknown	gnl\|CDD\|377931
NZ_CP040430.1\|WP_088429047.1\|4627073_4628351_-\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|372592
NZ_CP040430.1\|WP_049418116.1\|4626166_4627033_-\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NZ_CP040430.1\|WP_059035979.1\|4645797_4646196_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040430.1\|WP_088430149.1\|4641264_4642194_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|182548
NZ_CP040430.1\|WP_005411693.1\|4637624_4639094_-\|DUF3375-domain-containing-protein	unknown	unknown	gnl\|CDD\|371764
NZ_CP040430.1\|WP_024958416.1\|4643663_4645703_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|377393
NZ_CP040430.1\|WP_005411692.1\|4636936_4637638_-\|DUF4194-domain-containing-protein	unknown	unknown	gnl\|CDD\|372745
NZ_CP040430.1\|WP_088429053.1\|4630828_4632109_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP040430.1\|WP_154268021.1\|4610565_4612197_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP040430.1\|WP_088429057.1\|4632607_4633387_+\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NZ_CP040430.1\|WP_088429045.1\|4625341_4626115_-\|DUF4339-domain-containing-protein	unknown	unknown	gnl\|CDD\|379517
NZ_CP040430.1\|WP_005411691.1\|4633539_4636920_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|227250
NZ_CP040430.1\|WP_049418112.1\|4628435_4629410_-\|L-histidine-N(alpha)-methyltransferase	unknown	unknown	gnl\|CDD\|274579
NZ_CP040430.1\|WP_004141296.1\|4639206_4639818_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472

Protein	Function_ID	Function_description	E-value
NZ_CP040430.1\|WP_088429051.1\|4629406_4630678_-\|ergothioneine-biosynthesis-protein-EgtB	gnl\|CDD\|274581	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB. Members of this family include EgtB, and enzyme of the ergothioneine biosynthesis, as found in numerous Actinobacteria. Characterized homologs to this family include a formylglycine-generating enzyme that serves as a maturase for an aerobic sulfatase (cf. the radical SAM enzymes that serve as anaerobic sulfatase maturases). [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	0
NZ_CP040430.1\|WP_012481667.1\|4640505_4640961_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	9.6608e-13
NZ_CP040430.1\|WP_088429043.1\|4624147_4625335_+\|benzoate/H(+)-symporter-BenE-family-transporter	gnl\|CDD\|281578	pfam03594, BenE, Benzoate membrane transport protein.	5.10912e-134
NZ_CP040430.1\|WP_088430151.1\|4642190_4643660_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	3.88766e-58
NZ_CP040430.1\|WP_088429055.1\|4632112_4632505_-\|YchJ-family-protein	gnl\|CDD\|235261	PRK04233, PRK04233, hypothetical protein; Provisional.	1.16403e-79
NZ_CP040430.1\|WP_005411696.1\|4641070_4641280_+\|DUF1656-domain-containing-protein	gnl\|CDD\|377931	pfam07869, DUF1656, Protein of unknown function (DUF1656). This family contains bacterial proteins, many of which are hypothetical. Some proteins in this family are putative membrane proteins.	6.94375e-13
NZ_CP040430.1\|WP_088429047.1\|4627073_4628351_-\|lytic-murein-transglycosylase	gnl\|CDD\|372592	pfam13406, SLT_2, Transglycosylase SLT domain. This family is related to the SLT domain pfam01464.	1.06874e-140
NZ_CP040430.1\|WP_049418116.1\|4626166_4627033_-\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	5.27136e-103
NZ_CP040430.1\|WP_088430149.1\|4641264_4642194_+\|HlyD-family-secretion-protein	gnl\|CDD\|182548	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA.	7.07809e-77
NZ_CP040430.1\|WP_005411693.1\|4637624_4639094_-\|DUF3375-domain-containing-protein	gnl\|CDD\|371764	pfam11855, DUF3375, Protein of unknown function (DUF3375). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.	3.78935e-139
NZ_CP040430.1\|WP_024958416.1\|4643663_4645703_+\|FUSC-family-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	1.95361e-163
NZ_CP040430.1\|WP_005411692.1\|4636936_4637638_-\|DUF4194-domain-containing-protein	gnl\|CDD\|372745	pfam13835, DUF4194, Domain of unknown function (DUF4194).	5.17972e-40
NZ_CP040430.1\|WP_088429053.1\|4630828_4632109_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.03086e-46
NZ_CP040430.1\|WP_154268021.1\|4610565_4612197_+\|chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.71221e-85
NZ_CP040430.1\|WP_088429057.1\|4632607_4633387_+\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	6.60172e-34
NZ_CP040430.1\|WP_088429045.1\|4625341_4626115_-\|DUF4339-domain-containing-protein	gnl\|CDD\|379517	pfam14237, DUF4339, Domain of unknown function (DUF4339). This domain is found in bacteria, archaea and eukaryotes, and is approximately 50 amino acids in length. There are two completely conserved residues (G and W) that may be functionally important.	4.88771e-13
NZ_CP040430.1\|WP_005411691.1\|4633539_4636920_-\|ATP-binding-protein	gnl\|CDD\|227250	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP040430.1\|WP_049418112.1\|4628435_4629410_-\|L-histidine-N(alpha)-methyltransferase	gnl\|CDD\|274579	TIGR03438, conserved_hypothetical_protein, dimethylhistidine N-methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	9.61116e-147
NZ_CP040430.1\|WP_004141296.1\|4639206_4639818_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	8.98962e-108

>NZ_CP040430.1|WP_088429057.1|4632607_4633387_+|TSUP-family-transporter
MLELVPPELWWLVVIAFIAGLVDAAVGGGGLVQLPGLFTVLPQQTPAMLFGTNKFSSMFGTGAAAWRYARNVRFPWKPVLFAAGTAFIFSFAGATAVSLLPKDAVRPLVLVLLVAMLAYTLWKKDFGTLHRPQEIGRRELVIALAIGAAIGFYDGFFGPGTGSFLIFLFVRFFGLDFLRASAASKVVNLATNVAAISFFVPTGNILWLFALPMAAANIIGSVVGTRLALKGGTPFIRKLFVGLVVVLIARMAWDTFRGA
>NZ_CP040430.1|WP_088429055.1|4632112_4632505_-|YchJ-family-protein
MSRKPTDPCPCGLPADYAACCGRFHAGEAAPDAERLMRSRYSAYVRGLADYLRQSWHPDTRPAELSLDDAPGQRTHWLGLTVHEHTVTGADSAEVRFTARYRVGGGSAVKMAEHSRFLRVDGRWYYLDAV
>NZ_CP040430.1|WP_088429053.1|4630828_4632109_+|GGDEF-domain-containing-protein
MPLHPLRQPAHYLFVLPAVLVAVVLWAALGNEDVASPAQRILPWLLACLGAGLALLYHQVRTLCLLLVVAVMFALLHQDVGGYLHSGHVTALTPLRFHAISAWLPLLFAGLALWPERGRRRRDLLLRGVASGTALMIFLLLATQQPRGMHDLLSNRHWSWIPADWNALAQLPALLFLLATAALGWQAWRHPRPLHTAMLLALLCLWWMLPRVFLQPVLLPALASASLLLMLGAMLQESFHMAFRDELTGLPGRRAFNETLQRARGTYSIAMVDVDHFKSFNDTHGHDTGDDVLRLVASRLGRVGDGGRAFRYGGEEFAVVFLDRPAAACVDAVEALRQTIEDTRMQLRDRSTRSRDDETGRRQRGRGGSGQTVQVTVSIGLADSRVDERPAAVIKAADQALYAAKDGGRNQVRAHAGQRVLAARGG
>NZ_CP040430.1|WP_088429051.1|4629406_4630678_-|ergothioneine-biosynthesis-protein-EgtB
MDSVATAVAAPQRNLARQYACVRNRSMQLAAPLSAEDAMLQSMADASPSKWHLAHTTWFFERFVLAGFPPAPAHDPAWDYLFNSYYKSLGPAHARPQRGLLSRPSLQQVRDYRQQVDAQVQSRLAAGDLDEQALQHLQLGLQHEQQHQELLLTDIKHAFWCNPLQPAYREDLQPATSAASAQGWIESPERIVTIGAAAWPQHTAFAYDNESPAHRVLLPAHALAERPVSNAEYSAFIDAGGYREPRWWLSEGWALREAEGWQHPLYWDDALQREYTLGGWRELDPHAPVCHLSYYEADAYARWAGARLPSEFEWEAAAATLPPRGHFADDDRLHPQAAGGSGLRQLFGDVWEWTHSAYGAYPGFRPFAGNLGEYNGKFMCGQWVLRGGSCATPRGHVRASYRNFFMPPARWQFSGLRLARDLA
>NZ_CP040430.1|WP_049418112.1|4628435_4629410_-|L-histidine-N(alpha)-methyltransferase
MSTVHDALQALTDLTPSRQQILTDVVAGLSRTPRQLPSKYFYDARGSRLFEQITQTPEYYPTRTELALLSRVLPDIARSVGPHLHVVELGSGSGRKTALLLAALHDPVAYTPIEISRAALLSSIDHLAPALPEVEMLPVCADFTRPVAVPMPEREPARRLLFFPGSTLGNFEGEDAVALLRAMRQTMGRDGLALVGIDLHKDPALIKAAYNDAQGVTAAFTLNLLARLNREVGSDFDLQGFRHRARYSVARLRIETDLVSQRAQDVHLDGRTFHFEADEPIRVEYSHKYTDESFEALLQPAGLQVMQRWDAEGPAYGLRLLRAI
>NZ_CP040430.1|WP_088429047.1|4627073_4628351_-|lytic-murein-transglycosylase
MPILTTLGLAAALASAPTAPAAPAAPAGDMDPAFSRCLSGLQATAATQGISADRFNAITAGLTPDPTVLGLLDAQPEFTTPIWDYLAALVDRQRVADGRALLQQHRDLLDRVSAQYGVDPATIVAVWGVESDYGRVFGKRPLLQSLATLSCAGRRQPFFRGELLALLKLIDRGDLQAQGLTGSWAGAFGHTQFMPSTYARIAVDGDGDGRRDLVGSIPDALASTANYLKRAGWRSGEPWGMEVRVPTGFNASQAGRTQRRALADWRAQGVTALDGSVLAPANLPADARAALLLPAGNKGPALLVFRNYDAIYSYNAAESYALAIATLADQLRGGNGLATAWPTDDPGLGRDERRQLQTLLLARGHDIGAADGMIGTATRRAIQAEQQRLGWSEVDGRAGQRILRTLQEEAAAIAPAGQKALPAAR
>NZ_CP040430.1|WP_049418116.1|4626166_4627033_-|D-hexose-6-phosphate-mutarotase
MQSNPDISTGLYHGLEAWQVRTANATAVVSVFGGQLLSFIPDGQPDLLWLSPTRAELPTPIRGGVPVCWPWFGRQGQSADVPAHGLVRTARWELLQASQRDDGEVELQLAPARSADRGLRLQMQLRIGRQLRQQLVTENTGTSPVTFTQALHSYFRVGDVKRVEVEGLDGLQYLDKYEDYAQLRLQQGPWSLRDPRDPGRSDRIYTGAKGHYVLRDPVLQRRIEIRSEGSQTLVVWNPGAEAAARMADVGEGWRDYVCLEVANAGPEQITLAPGARHQLVQTLGSTAL
>NZ_CP040430.1|WP_088429045.1|4625341_4626115_-|DUF4339-domain-containing-protein
MQEAQWWYANGRQSSGPVDLAGLRQLQQEGTVTARTLLWCEGMPSWRPLAELEQASTPVEVVPALDIDAAPAVEGIAPDVGDPSDPYRAPVAAADRAAAAGLEGEMALYASVVGGNFPIYRQRWRLDQGVATGSGTWHWPAFLLGLIWMMYRRMYRLAAMWAGLLLLISVVETWLDVPDGLSLVITFALSITTGIFGNSWYLAHCQRLIAQARAVTGDDDARLRSELTARGGTSVVATLIAIVIAVALSIVGAALAG
>NZ_CP040430.1|WP_088429043.1|4624147_4625335_+|benzoate/H(+)-symporter-BenE-family-transporter
MNIQVRQAWWRDLSVPALVAGFITVLVGFASSAVIVFQAAQAVGANQAQIASWMWALGLGMGVTCIGLSLRYRVPVVTAWSTPGAAMLVVGAGGASLSEATGAFLLAAVLGMLAGFSGIFARLMQRVPMALAAGMLAGVLLRFGLDVFVAMNTQLVLALAMFATWLTGRRLFPRYAVIATLLVGIAVAASRGLLHAQQVQLQLAVPQWVTPSLSWTAVAGIALPLFVVTMASQNIPGVAVMRASGYDAPVSPLIGWIGVVNTLLAPFGAYALNLAAITAAICMGRDAHEDPARRYTAAMAAGAFYIVIGLFGATVAALFAAFPKELVACVAGIALFGTIANSLASALAVERDREAALVTFLVTASGVSLAGIGSAFWGLVAGALCLLVLRPRQDR
>NZ_CP040430.1|WP_154268021.1|4610565_4612197_+|chemotaxis-protein
MSVASSRPPDTARLPHLQQLAHRADRRLLIGSAVLALAGLALALRGPQVQAAALAAVAVLPAAWLGGAQAGRAVARNGLALLLSLQLAVLCAIISLSPALPMALLRNQQATLRQAFPDFDAERLVGSSIHRFHANPDRIRAILNGLQVTHNGKVQIGPVHFAQVVTPVFDAQGVRLGFAVEWHDRTHELALENAVAGIVAAAASGDLDQRLQATEGASFLDGLTGGINQLLDTLGSTVNEVRQMLSALANGDLDRRMHGEYHGAFAAIQRDANATAGQLARMVGRIQECAASISTAASEIAAGNGALSERSERQAAHLQETAASMEELTATVRQNAAHAREASALAASTQNAASDGNTAMQRVVDTMQAIEGASKRIGDITGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRVLAQRSAAAAQEIRKLIDEAGRQVGEGAQLVADAGQRMQGIVGGVEDVSHLMREISAASQEQSIGIEQINQTVVQMDQATQQNAALVEEATAAARELQSQAGTLTEAVSVFRQQEPLEVSRVA
>NZ_CP040430.1|WP_005411691.1|4633539_4636920_-|ATP-binding-protein
MAISKHTPALFNEGLPDPRLQQFRMRRLQVHNWGTFNGLTEVPIAERGFLFVGRSGSGKSTLLDAMSALLTPPAIVDFNAAAREAERSGRDRNLVSYVRGAWADQQDSGTGEIATQYLRKGATWTALVLEYRAGDGRVVSLVRLLWISGNGTSAGDVRKHYMIAERPFDIAKDLGGFDLDLRKLKQKLSDLHHFDTFSGYAERFRDLLGIDNEMALRLLHKTQSAKNLGDLNVFLRDFMLDTPKTFDAAERLVSDFAELDGAHQAVVTARRQVETLLPARAYYNDLKEMHRRRGDDEALKLGVDSFRESRRQALIEARLREMDVRDRGLLGEEAQRRAALDNHTERLAELELQRRQQGGERIEELEREQGRAEAERDRRQAKREQASLAAQQLGAELPDDAHGFAELVERAQNELQDRQRASSALDDAISDRLGGKRDDERRFGEVRAELEAMQRTPSNIPAPMQKLRARLAEETGIAEAALPFVGELIQVRSEEQGWQGAIERVLGGFALSLLVDDKHYNDVAEWVNRTHLGMRFTYYRVRRNDDAFAREPSAKSLLHKLELREHVFESWLRRELGKRFDYECVDAKQLRNVDRGITREGQVKHPGDRFEKDDRSAVGDRRRWILGFNNHDKVGAFEREAQELAKRIASCETDIARLRGQRDRDNERRLACHELVSISWNEIDIAAPQQRLSDIEATLRDLREGNADLAKLAKQIDAVRADIEQARRTYEDVRVERGQLVKERDRLDRARQQSRALVLPSLAQEQEAGLAERLQEQGPLSLETLEAHMRQVSNALNEQLSSSQQDLNRIENQLIGCFRRFIQQWPEESGDFTVSVASAEDFLARLERLERDGLPQHEERFFDLLQNQSKNNLLALQRHSAEARKSIGQRLDEVNASLEQVPFNRGTLLTIELSDRRLPEVGEFQLQLREVLSQQQTEQRELAESQFTVLRQLVNRLGSQEGEDKRWRELVLDVRMHVEFIGVELDAETRQQVEIYRSGAGKSGGQRQKLATTCLAAALRYQLGGADSQLPSYAAVVLDEAFDKADNEFTALAMNIFDNFGFQMVVATPLKSVMTLEPFIGGACFVEISGRHDSGVLLIEYDEEGKRLKLPERSRQQANEPEEAEA
>NZ_CP040430.1|WP_005411692.1|4636936_4637638_-|DUF4194-domain-containing-protein
MSWHEDPIDAAQADVAEDAYEAEPVAAVAQPRRGNDVYYLGDTGRLPLDARRALCQLLIGPSIDQLRHAKLWPALIRSEAAIRSSLADLFLELVLDRDSGVAFTRQADTEDVDAPVLLRTSPLTFIDSVLLLYLRQQLAEADARGNRAVVADAEMAEALAIYEKNLSTDRAGFNRRVASAVQKMKDNHILTRLSGQEDRHEVSPALKLLFSAEDVSQLSAVYRQLRETPAAEA
>NZ_CP040430.1|WP_005411693.1|4637624_4639094_-|DUF3375-domain-containing-protein
MKHRERIARYRHLREQPQWKLLAADHAPEIIGLLQGLLMDGERTLPSSVLNERLQRALDQLAGDELSRELPRTAQAYIAHWLAQGWLERRLPEGADQEQYELATAALQAIRFADGLEQARVAATESRLALVIEQLSALAAQTEADPDARLSALHDERDRIDAEIARVGTGRVVALDGKRALERTRQIIGLADELTEDFRRVRDDFEQLNRDFRERIIDDEGERGDVLSQLFEGVDVIGESDAGRSFQAFWRLLNDAEQSAQLDAALEAVLARGFARRLDRNERNFLRSFTSTMLERGGQVHDVLQNFARSLRGFVQSRGYLEQRRLNQLLKQAQSEALALRDEFPAQRGIGRDLQLTTSRLRSWSQWKLHDPRSAQVDGNVEYNDAAAISLESVGDLVASSEIDFRTLRRDLHDLLDAQPRLSIAQALSQREAPQGLGSVIGYLSLGTRFGNVVAGEQELAQWRGGDGQVRRARIPLVWFTQERRHELA
>NZ_CP040430.1|WP_004141296.1|4639206_4639818_-|GTP-cyclohydrolase-I-FolE
MSKNNEKAAPQGDVTQDQAEDAVRTLLRWAGEDPSREGLLDTPRRVAEAYGDWFSGYRDDPRAYMERTFEEVAGYDELIVLRDIEYESHCEHHMAPIIGRVHVGYLPAGKVVGISKLARVVEAYARRFQVQEKMTAQIAQCIQDVLQPIGVGVVVEGAHECMTTRGIHKRGVSMVTSKMLGSFRDDARTRAEFLRFIEVGGKR
>NZ_CP040430.1|WP_012481667.1|4640505_4640961_+|MarR-family-transcriptional-regulator
MDRPLDERTVLQMQLSSGLLYAGRQWQRLADSRLGSYGISTACTMPLLMIGRSGGGIRQVALAQQLGMEGPSLVRLLDKLCASDLVRRESDASDRRANLLWLTDAGHALVSELEDQLIGLRQDVFGELSMDELHAVLKAWRLLAEAADRIT
>NZ_CP040430.1|WP_005411696.1|4641070_4641280_+|DUF1656-domain-containing-protein
MPGEFSLHGVFVPTLLGLMLLAYLVNSGLHALLQRAGAYRHIWHPPLFNLALYGIVLGLLFHLLRWMQS
>NZ_CP040430.1|WP_088430149.1|4641264_4642194_+|HlyD-family-secretion-protein
MDAIVNKIVKKTLPVLLTSAAVIIALLVLRQLWVYYMDEPWTRDAHVGADVVQVAPDVSGLVETVQVADNQAVKKGDLLFVVDRARYRIALEQARANLAERQASVAQLRREIGRDRSLQDLVAAEDAEVRRAKLQAAQAALATAQAAVDLAELNLGRTEVRAPADGRVNDRTLRVGDYVVAGKPVLALLDTGSFRVDGYFEETRLRGVAPGQSVDIRLMGESAPLRGHVESIAAGIEDRYRSNGSTLLPNVTPAFDWVRLAQRIPVRIAIDDVPQGVELIAGRTATVTVDTGRHPHNDKAGTEPTQAGL
>NZ_CP040430.1|WP_088430151.1|4642190_4643660_+|efflux-transporter-outer-membrane-subunit
MNAALPRLGLIVALASLAACRTVGPDYALPEGSAFKRPEANAAFIDMQNPQVAANQALPDRWWSLYNDPVLDGLITQALRDNVELKAADAHLRRAAAVYEQALDAGGFEYEAEAGVSRAQLSAESFLQEHELPVINLADGKFAVSYQFDLFGKLKRGAEAARADEQSVAAARDLAQVSVVAQVADSYLEICHANHELHVAEHSLQLQQRSRTVTERLIAAGRGTPPELARANAQVALLEAALPPLRAQRSAAAYSLAALLGKTPGQLPAGVIDCAHAPGLAQPLPVGDGRALLQRRPDVRQAERKLASATARIGVATAELYPDIRLGASVGAAGLLEDFGTPMTQQWSIGPLISWTLPSSGTHARIHAAEAGADAALAEFDHTVLQALRETQTALDRYAQDLRRLQSLRIAQEQAALAAEQNRRLYQGGRTPYLSSLDADRSLATSDATLAAAEAQVSRDQIHLFLVLGGGWQASVAPPAPSTAQASAK
>NZ_CP040430.1|WP_024958416.1|4643663_4645703_+|FUSC-family-protein
MNALTDRQAWLFSIKTYLAAVAALYIAMAGNLSRPYWAMGTVYIVSQPLLGPTRAKGVYRIVGTLVAGLATLLVLPALVETPLVLSAAMSIWLAGCLFMALLNRGPRGYAFLLAGYTTAFIGFPAVTSPETIFDTVVARSEEIILGTVVAVLFASLLFPASVRPMLRARIGNWMEDAAQWCRQILERGRAHAPRNRLAADLVQFEALIEFLRRDDPRHAGSAVSMERLRERMLLLLPVLSSIADRLSALRSDGQDLPEGLPALVDDIHDWLDGPTNASEYARLRARISALKPQVDRDLQHLQLASLLLRLEELVDLWQDCRTLQHAIDQGTAPLDRAHYRIRTERVAADKHVDYGMALFSALSAGAALMSYCVLWIALGWEGGGNGAMMAAVTAAFFAAQDDPAPSMVSFLVWAMVASVVAGVYLFGVFPAVHDFGLLALVLAVAFLPLGLMLHHPKSALFALPLTVNLAALLSLQNTYSANIQTFLNSSIAMFIGIGFAVVMTRLFRSVGAEWTARRLVRQGWTTLAEAAEGRGQQDRQRFAARMLDLLGLLAPRLAATPEGSDIASVDMLNEARIGLNILQLRRARLELPERSREAVEHILEEVAVHYRRQIAARKPIVAAEALRERLDTSLGRVGSVAACKARDEALMGLIGLRFALFPEAKALAPGLAMSAAGQP
>NZ_CP040430.1|WP_059035979.1|4645797_4646196_+|hypothetical-protein
MSYDMMVFEASAAPREAAAFIAWFEKQTQWNERHEYDDPVVSSPSLQAWFAEMAQDFPPMNGPLSNDDDDRAEVTEYSIGRQVIYGAFAYSVAERAHGRVQDLAEKHGVGFFDVSADEAAIVFPDGLVLIAE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040430_10	10.2\|3756400\|19\|NZ_CP040430\|PILER-CR	3756400-3756418	19	NZ_CP040430.1	4015961-4015979	0	1.0
NZ_CP040430_10	10.2\|3756400\|19\|NZ_CP040430\|PILER-CR	3756400-3756418	19	NZ_CP040430.1	4428741-4428759	0	1.0
NZ_CP040430_10	10.2\|3756400\|19\|NZ_CP040430\|PILER-CR	3756400-3756418	19	NZ_CP040430.1	1897120-1897138	1	0.947
NZ_CP040430_10	10.2\|3756400\|19\|NZ_CP040430\|PILER-CR	3756400-3756418	19	NZ_CP040430.1	4674306-4674324	1	0.947
NZ_CP040430_10	10.2\|3756400\|19\|NZ_CP040430\|PILER-CR	3756400-3756418	19	NZ_CP040430.1	61237-61255	2	0.895
NZ_CP040430_10	10.2\|3756400\|19\|NZ_CP040430\|PILER-CR	3756400-3756418	19	NZ_CP040430.1	528137-528155	2	0.895
NZ_CP040430_10	10.2\|3756400\|19\|NZ_CP040430\|PILER-CR	3756400-3756418	19	NZ_CP040430.1	3118066-3118084	2	0.895
NZ_CP040430_10	10.2\|3756400\|19\|NZ_CP040430\|PILER-CR	3756400-3756418	19	NZ_CP040430.1	4015919-4015937	2	0.895

1. spacer 10.2|3756400|19|NZ_CP040430|PILER-CR matches to position: 4015961-4015979, mismatch: 0, identity: 1.0

ccgtgccgaccaaggtcgg	CRISPR spacer
ccgtgccgaccaaggtcgg	Protospacer
*******************

2. spacer 10.2|3756400|19|NZ_CP040430|PILER-CR matches to position: 4428741-4428759, mismatch: 0, identity: 1.0

ccgtgccgaccaaggtcgg	CRISPR spacer
ccgtgccgaccaaggtcgg	Protospacer
*******************

3. spacer 10.2|3756400|19|NZ_CP040430|PILER-CR matches to position: 1897120-1897138, mismatch: 1, identity: 0.947

ccgtgccgaccaaggtcgg	CRISPR spacer
ccatgccgaccaaggtcgg	Protospacer
**.****************

4. spacer 10.2|3756400|19|NZ_CP040430|PILER-CR matches to position: 4674306-4674324, mismatch: 1, identity: 0.947

ccgtgccgaccaaggtcgg	CRISPR spacer
ccgcgccgaccaaggtcgg	Protospacer
***.***************

5. spacer 10.2|3756400|19|NZ_CP040430|PILER-CR matches to position: 61237-61255, mismatch: 2, identity: 0.895

ccgtgccgaccaaggtcgg	CRISPR spacer
ccgtgccaaccaaggttgg	Protospacer
*******.********.**

6. spacer 10.2|3756400|19|NZ_CP040430|PILER-CR matches to position: 528137-528155, mismatch: 2, identity: 0.895

ccgtgccgaccaaggtcgg	CRISPR spacer
ccgcgccggccaaggtcgg	Protospacer
***.****.**********

7. spacer 10.2|3756400|19|NZ_CP040430|PILER-CR matches to position: 3118066-3118084, mismatch: 2, identity: 0.895

ccgtgccgaccaaggtcgg	CRISPR spacer
ccgtgccaaccaaggttgg	Protospacer
*******.********.**

8. spacer 10.2|3756400|19|NZ_CP040430|PILER-CR matches to position: 4015919-4015937, mismatch: 2, identity: 0.895

ccgtgccgaccaaggtcgg	CRISPR spacer
ccgtgccaaccaaggttgg	Protospacer
*******.********.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040430_3	3.1\|1854321\|25\|NZ_CP040430\|CRISPRCasFinder	1854321-1854345	25	NZ_CP051294	Mesorhizobium sp. NZP2077 plasmid pMSNZP2077A, complete sequence	280981-281005	4	0.84
NZ_CP040430_3	3.1\|1854321\|25\|NZ_CP040430\|CRISPRCasFinder	1854321-1854345	25	NZ_CP033363	Mesorhizobium sp. NZP2077 plasmid pMSNZP2077NSa, complete sequence	280968-280992	4	0.84
NZ_CP040430_11	11.1\|3963305\|25\|NZ_CP040430\|CRISPRCasFinder	3963305-3963329	25	NC_003064	Agrobacterium fabrum str. C58 plasmid At, complete sequence	289792-289816	4	0.84
NZ_CP040430_15	15.1\|4633465\|25\|NZ_CP040430\|CRISPRCasFinder	4633465-4633489	25	CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	202965-202989	4	0.84
NZ_CP040430_15	15.1\|4633465\|25\|NZ_CP040430\|CRISPRCasFinder	4633465-4633489	25	NC_022536	Rhizobium sp. IRBG74 plasmid IRBL74_p, complete sequence	551467-551491	5	0.8
NZ_CP040430_10	10.1\|3756324\|33\|NZ_CP040430\|PILER-CR	3756324-3756356	33	NC_028745	Pseudomonas phage DL60, complete genome	10534-10566	7	0.788
NZ_CP040430_10	10.1\|3756324\|33\|NZ_CP040430\|PILER-CR	3756324-3756356	33	MN234214	Arthrobacter phage Amelia, complete genome	25750-25782	7	0.788
NZ_CP040430_10	10.1\|3756324\|33\|NZ_CP040430\|PILER-CR	3756324-3756356	33	NC_008010	Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence	95870-95902	9	0.727

1. spacer 3.1|1854321|25|NZ_CP040430|CRISPRCasFinder matches to NZ_CP051294 (Mesorhizobium sp. NZP2077 plasmid pMSNZP2077A, complete sequence) position: , mismatch: 4, identity: 0.84

atgaacgattgaagcatcacctgga	CRISPR spacer
ctgaacgattgaagcatcactggta	Protospacer
 *******************. * *

2. spacer 3.1|1854321|25|NZ_CP040430|CRISPRCasFinder matches to NZ_CP033363 (Mesorhizobium sp. NZP2077 plasmid pMSNZP2077NSa, complete sequence) position: , mismatch: 4, identity: 0.84

atgaacgattgaagcatcacctgga	CRISPR spacer
ctgaacgattgaagcatcactggta	Protospacer
 *******************. * *

3. spacer 11.1|3963305|25|NZ_CP040430|CRISPRCasFinder matches to NC_003064 (Agrobacterium fabrum str. C58 plasmid At, complete sequence) position: , mismatch: 4, identity: 0.84

gtcatggcagtggaaagcaccgtgc	CRISPR spacer
tgcatggcagcggaaaccaccgtgc	Protospacer
  ********.***** ********

4. spacer 15.1|4633465|25|NZ_CP040430|CRISPRCasFinder matches to CP036360 (Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence) position: , mismatch: 4, identity: 0.84

ccccatccgatcaggtcatgaaccc	CRISPR spacer
ttctatccgatcaggtcatgacccc	Protospacer
..*.***************** ***

5. spacer 15.1|4633465|25|NZ_CP040430|CRISPRCasFinder matches to NC_022536 (Rhizobium sp. IRBG74 plasmid IRBL74_p, complete sequence) position: , mismatch: 5, identity: 0.8

ccccatccgatcaggtcatgaaccc	CRISPR spacer
ttttatccgatcaggtcatgacccc	Protospacer
....***************** ***

6. spacer 10.1|3756324|33|NZ_CP040430|PILER-CR matches to NC_028745 (Pseudomonas phage DL60, complete genome) position: , mismatch: 7, identity: 0.788

-gatgcatccgccgggcacagccccgcgctgctc	CRISPR spacer
tgccgcg-cggctgggcacagcccggcgctgctc	Protospacer
 * .**. * **.*********** *********

7. spacer 10.1|3756324|33|NZ_CP040430|PILER-CR matches to MN234214 (Arthrobacter phage Amelia, complete genome) position: , mismatch: 7, identity: 0.788

gatgcatccgccgggcacagccccgc--gctgctc	CRISPR spacer
ttcgcgtccgccggccacagccccgcgagctgc--	Protospacer
  .**.******** ***********  *****

8. spacer 10.1|3756324|33|NZ_CP040430|PILER-CR matches to NC_008010 (Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence) position: , mismatch: 9, identity: 0.727

gatgcatccgccgggcacagccccgcgctgctc	CRISPR spacer
cgcagtgccgccgagcacggccccgcgctgctc	Protospacer
 ...   ******.****.**************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

908806 : 1019071

118

Rhizobium_phage(16.22%)

integrase,protease,head,transposase,terminase,tail,capsid

attL 909922:909981|attR 977984:979208

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088430867.1\|908806_909667_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.1e-40	38.2
WP_043035747.1\|909663_909906_-\|transposase	transposase	NA	NA	NA	NA
909922:909981	attL	NA	NA	NA	NA
WP_087944427.1\|909927_911084_-\|transposase	IS3-like element ISStma5 family transposase	NA	NA	NA	NA
WP_043033750.1\|911797_913678_+	propionate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	3.7e-62	31.1
WP_005408228.1\|913893_914397_+	hypothetical protein	NA	NA	NA	NA
WP_154267693.1\|914443_915499_+	suppressor of fused domain protein	NA	NA	NA	NA
WP_005408230.1\|915566_916178_-	glutathione S-transferase	NA	NA	NA	NA
WP_004154513.1\|916262_916721_-	cell wall hydrolase	NA	NA	NA	NA
WP_154267694.1\|917019_919050_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_154267695.1\|919424_920054_-	hypothetical protein	NA	NA	NA	NA
WP_154267696.1\|920257_921277_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_005408234.1\|921634_922735_+	OmpA family protein	NA	NA	NA	NA
WP_005408235.1\|922957_923464_+	hypothetical protein	NA	NA	NA	NA
WP_088431113.1\|923484_924294_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_005412356.1\|924379_924715_+	hypothetical protein	NA	NA	NA	NA
WP_005408238.1\|924799_926008_-	glycine C-acetyltransferase	V5LQ39	Emiliania_huxleyi_virus	5.9e-21	26.2
WP_005412357.1\|926206_926902_+	hypothetical protein	NA	NA	NA	NA
WP_010483949.1\|927034_928057_-	L-threonine 3-dehydrogenase	NA	NA	NA	NA
WP_005412359.1\|928535_930698_+	S46 family peptidase	NA	NA	NA	NA
WP_005408242.1\|930889_931534_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_088431117.1\|931574_932846_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_088431119.1\|932927_933971_+	sporulation protein	NA	NA	NA	NA
WP_012479253.1\|934017_934797_+	colicin V biosynthesis protein	NA	NA	NA	NA
WP_005408246.1\|934827_936294_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.4e-85	39.4
WP_088431121.1\|936303_937128_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_088431123.1\|937195_938653_-	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_043033738.1\|938878_940132_+	peptidyl-Asp metalloendopeptidase	NA	NA	NA	NA
WP_012479257.1\|940219_940966_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_062607709.1\|941060_941600_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_049449914.1\|941580_942726_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_088431125.1\|942875_945800_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	2.9e-37	26.1
WP_005408254.1\|945943_946117_+	hypothetical protein	NA	NA	NA	NA
WP_005408255.1\|946194_947721_-	exopolyphosphatase	NA	NA	NA	NA
WP_005408256.1\|947990_950078_-	polyphosphate kinase 1	NA	NA	NA	NA
WP_088431127.1\|950082_951414_-	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	1.9e-28	33.2
WP_005408258.1\|951520_952210_-	phosphate regulon transcriptional regulatory protein PhoB	W8CYM9	Bacillus_phage	2.6e-34	34.7
WP_005412370.1\|952326_953973_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_004154541.1\|954115_954406_+	glutaredoxin 3	A0A2L0UZG6	Agrobacterium_phage	2.0e-07	43.2
WP_088431129.1\|954402_954795_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_024956065.1\|955115_956120_+	isocitrate dehydrogenase	NA	NA	NA	NA
WP_088431029.1\|956365_957109_+	cysteine hydrolase	NA	NA	NA	NA
WP_005408263.1\|957162_958071_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005408264.1\|958096_958846_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_088431031.1\|958905_959802_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_088431033.1\|960217_960949_+	hypothetical protein	NA	NA	NA	NA
WP_141098029.1\|960941_961466_+	hypothetical protein	NA	NA	NA	NA
WP_141098030.1\|961487_962612_+	hypothetical protein	NA	NA	NA	NA
WP_088431059.1\|962573_963557_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	2.8e-61	40.1
WP_088431035.1\|963803_964025_-	hypothetical protein	NA	NA	NA	NA
WP_088431037.1\|964021_964201_-	hypothetical protein	A0A1B0VN94	Pseudomonas_phage	2.9e-17	65.0
WP_088431041.1\|964447_964810_-	hypothetical protein	NA	NA	NA	NA
WP_088431043.1\|964802_965627_-	hypothetical protein	A0A0U5KRL9	unidentified_phage	1.4e-05	39.2
WP_043402317.1\|965623_965863_-	hypothetical protein	B7SYG4	Stenotrophomonas_phage	7.4e-37	96.2
WP_088431047.1\|968067_968367_+	hypothetical protein	NA	NA	NA	NA
WP_154267697.1\|968652_969165_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7L7C7	uncultured_marine_virus	5.4e-08	34.8
WP_088430867.1\|969248_970109_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.1e-40	38.2
WP_006388655.1\|970105_970399_-\|transposase	transposase	NA	NA	NA	NA
WP_154267698.1\|970459_971152_-	hypothetical protein	NA	NA	NA	NA
WP_005412378.1\|971218_971593_-	hypothetical protein	NA	NA	NA	NA
WP_005412379.1\|972332_972473_-	hypothetical protein	NA	NA	NA	NA
WP_032961789.1\|972714_973335_-	antirestriction protein	U5P3Z5	Mycobacterium_phage	5.7e-20	34.5
WP_032961791.1\|973398_973659_-	hypothetical protein	NA	NA	NA	NA
WP_032961794.1\|973655_973838_-	hypothetical protein	NA	NA	NA	NA
WP_005412383.1\|973834_974275_-	hypothetical protein	NA	NA	NA	NA
WP_005412384.1\|974274_974598_-	hypothetical protein	NA	NA	NA	NA
WP_005412385.1\|974650_975250_-	hypothetical protein	Q8HAP4	Burkholderia_phage	6.5e-13	41.1
WP_154267699.1\|975553_975715_-	hypothetical protein	NA	NA	NA	NA
WP_087944427.1\|976880_978036_+\|transposase	IS3-like element ISStma5 family transposase	NA	NA	NA	NA
WP_005412386.1\|978131_978347_+	hypothetical protein	NA	NA	NA	NA
WP_043033726.1\|978562_978895_+	hypothetical protein	NA	NA	NA	NA
WP_005409127.1\|978998_979385_+	response regulator	NA	NA	NA	NA
977984:979208	attR	NA	NA	NA	NA
WP_005412387.1\|979406_979859_-	hypothetical protein	Q7Y5G6	Xanthomonas_virus	1.5e-09	32.9
WP_005412388.1\|979855_980164_-	hypothetical protein	NA	NA	NA	NA
WP_065426719.1\|980173_980671_-	hypothetical protein	A0A2H4JFP9	uncultured_Caudovirales_phage	5.2e-40	59.2
WP_005412390.1\|980667_980859_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_005412391.1\|980867_982541_-\|terminase	phage terminase large subunit	A0A2R2ZGE7	Ralstonia_phage	3.6e-178	56.5
WP_032961803.1\|982540_982786_-	hypothetical protein	NA	NA	NA	NA
WP_005412393.1\|982782_983052_-	hypothetical protein	NA	NA	NA	NA
WP_126411773.1\|983078_983564_-	hypothetical protein	NA	NA	NA	NA
WP_049427184.1\|983563_986368_-	hypothetical protein	A0A142EZL1	Stenotrophomonas_phage	7.2e-38	40.1
WP_005412396.1\|986393_988931_-	DUF1983 domain-containing protein	NA	NA	NA	NA
WP_099470283.1\|988970_992063_-	hypothetical protein	L7TQZ1	Rhizobium_phage	3.2e-47	23.3
WP_032961810.1\|992141_994316_-	hypothetical protein	NA	NA	NA	NA
WP_032961812.1\|994319_994718_-	hypothetical protein	NA	NA	NA	NA
WP_005412400.1\|994750_995224_-	hypothetical protein	NA	NA	NA	NA
WP_005412401.1\|995220_997353_-	hypothetical protein	L7TLW2	Rhizobium_phage	3.6e-66	31.5
WP_005412402.1\|997352_997943_-	hypothetical protein	A0A2R2ZGD2	Ralstonia_phage	1.7e-26	41.9
WP_005412403.1\|998042_998996_-\|capsid	phage capsid protein	L7TJ83	Rhizobium_phage	2.4e-62	42.7
WP_005412404.1\|999022_999808_-\|capsid	capsid assembly protein, putative	A0A1B1IVZ8	uncultured_Mediterranean_phage	1.1e-20	30.6
WP_004154577.1\|999807_999951_-	hypothetical protein	NA	NA	NA	NA
WP_005412405.1\|999967_1001524_-\|head,tail	phage collar / T7-like phage head-to-tail joining protein	L7TJ79	Rhizobium_phage	1.1e-85	37.6
WP_005412406.1\|1001516_1001669_-	hypothetical protein	NA	NA	NA	NA
WP_005412407.1\|1001689_1001869_-	hypothetical protein	NA	NA	NA	NA
WP_004154581.1\|1001933_1002470_-	adenylate kinase	A0A2H4J8A1	uncultured_Caudovirales_phage	1.4e-30	46.1
WP_032961816.1\|1002538_1002847_+	hypothetical protein	NA	NA	NA	NA
WP_005412408.1\|1002872_1003079_-	hypothetical protein	NA	NA	NA	NA
WP_004154583.1\|1003066_1003900_-	hypothetical protein	M1HMA9	Pelagibacter_phage	2.0e-36	36.0
WP_005412410.1\|1003896_1004046_-	hypothetical protein	NA	NA	NA	NA
WP_043033722.1\|1004042_1004354_-	hypothetical protein	NA	NA	NA	NA
WP_005412412.1\|1004350_1004599_-	hypothetical protein	NA	NA	NA	NA
WP_005412414.1\|1004749_1005115_-	hypothetical protein	NA	NA	NA	NA
WP_050483582.1\|1005111_1005450_-	hypothetical protein	A0A2H4P845	Pseudomonas_phage	9.6e-22	53.2
WP_049417451.1\|1005431_1007306_-	DNA polymerase	A0A076YNV1	Mesorhizobium_phage	5.0e-160	48.0
WP_005412416.1\|1007318_1007969_-	hypothetical protein	NA	NA	NA	NA
WP_005412417.1\|1007979_1008228_-	hypothetical protein	NA	NA	NA	NA
WP_004154589.1\|1008393_1010025_-	toprim domain-containing protein	L7TLT7	Rhizobium_phage	3.7e-151	56.6
WP_004154591.1\|1010011_1010191_-	hypothetical protein	NA	NA	NA	NA
WP_080101784.1\|1010187_1010589_-	hypothetical protein	NA	NA	NA	NA
WP_004154593.1\|1010585_1010948_-	putative N-acetylmuramoyl-L-alanine amidase	I6Q9Z5	Yersinia_phage	2.5e-15	40.6
WP_080101785.1\|1010948_1011428_-	RusA family crossover junction endodeoxyribonuclease	A0A2I7QZP6	Vibrio_phage	1.4e-05	31.1
WP_004154595.1\|1011369_1012035_-	hypothetical protein	A0A076YJ33	Mesorhizobium_phage	1.5e-26	40.9
WP_154267700.1\|1012034_1012193_-	hypothetical protein	NA	NA	NA	NA
WP_005412421.1\|1012192_1012477_-	hypothetical protein	NA	NA	NA	NA
WP_005412422.1\|1012469_1012613_-	hypothetical protein	NA	NA	NA	NA
WP_005412423.1\|1012657_1015093_-	DNA-directed RNA polymerase	L7TQW5	Rhizobium_phage	1.5e-164	40.7
WP_005408268.1\|1015656_1016952_+	trigger factor	NA	NA	NA	NA
WP_004146318.1\|1017028_1017655_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	7.7e-57	57.4
WP_004154600.1\|1017781_1019071_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.9e-135	58.0

DBSCAN-SWA_2

1060963 : 1150617

Enterobacter_phage(20.83%)

transposase,integrase,plate,tail

attL 1051930:1051949|attR 1076619:1076638

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1051930:1051949	attL	NA	NA	NA	NA
WP_087944427.1\|1060963_1062119_+\|transposase	IS3-like element ISStma5 family transposase	NA	NA	NA	NA
WP_154267709.1\|1062132_1062435_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_154267710.1\|1062668_1063211_+	hypothetical protein	NA	NA	NA	NA
WP_154267711.1\|1063458_1064850_-\|integrase	tyrosine-type recombinase/integrase	A0A059XK29	uncultured_phage	2.5e-07	25.6
WP_099524412.1\|1065411_1066146_+	hypothetical protein	NA	NA	NA	NA
WP_154267712.1\|1066180_1067254_+	DUF4263 domain-containing protein	NA	NA	NA	NA
WP_099524413.1\|1067305_1067536_+	hypothetical protein	NA	NA	NA	NA
WP_154268025.1\|1068143_1068557_+	hypothetical protein	NA	NA	NA	NA
WP_154267713.1\|1068636_1069458_+	hypothetical protein	NA	NA	NA	NA
WP_154267714.1\|1069693_1070683_-	Abi family protein	A3QSC6	Clostridium_virus	9.7e-22	30.4
WP_154267715.1\|1070955_1071798_+	conjugal transfer protein traA	NA	NA	NA	NA
WP_087944427.1\|1071748_1072904_+\|transposase	IS3-like element ISStma5 family transposase	NA	NA	NA	NA
WP_154267716.1\|1073022_1073724_+	hypothetical protein	NA	NA	NA	NA
WP_154267717.1\|1074211_1075006_-	NYN domain-containing protein	NA	NA	NA	NA
WP_154267718.1\|1075002_1076535_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_005408297.1\|1076859_1078911_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.1e-47	41.4
1076619:1076638	attR	NA	NA	NA	NA
WP_005408298.1\|1078917_1079238_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_024956125.1\|1079349_1079949_+	recombination protein RecR	NA	NA	NA	NA
WP_005408300.1\|1080016_1080376_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_005408301.1\|1080453_1080981_-	membrane protein	NA	NA	NA	NA
WP_154267719.1\|1080977_1082927_-	DUF3488 domain-containing protein	NA	NA	NA	NA
WP_154267720.1\|1082919_1083864_-	DUF58 domain-containing protein	NA	NA	NA	NA
WP_005408304.1\|1083866_1084820_-	AAA family ATPase	NA	NA	NA	NA
WP_154267721.1\|1084862_1086704_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_059033317.1\|1086987_1087557_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_012479287.1\|1087670_1088180_+	hypothetical protein	NA	NA	NA	NA
WP_005408308.1\|1088287_1088482_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_005408309.1\|1088573_1089551_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_005408310.1\|1089629_1090412_+	hypothetical protein	NA	NA	NA	NA
WP_059033318.1\|1090668_1091613_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_005408312.1\|1091695_1092439_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	4.7e-13	32.3
WP_005408313.1\|1092591_1092831_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	4.6e-10	44.6
WP_012479290.1\|1092974_1094237_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_154267722.1\|1094427_1095792_+	aminodeoxychorismate synthase component I	NA	NA	NA	NA
WP_005412449.1\|1095989_1097051_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_099605028.1\|1097047_1097713_+	dTMP kinase	W8D0J5	Erwinia_phage	1.6e-20	35.0
WP_024956116.1\|1097709_1098666_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_005412452.1\|1098662_1099016_+	type IV pilus biogenesis protein PilZ	NA	NA	NA	NA
WP_099561506.1\|1099201_1099816_+	tautomerase family protein	NA	NA	NA	NA
WP_109337334.1\|1099846_1100920_-	phage late control D family protein	D5LGY1	Escherichia_phage	2.9e-96	52.5
WP_154267723.1\|1100910_1101126_-\|tail	phage tail protein	A0A193GYC8	Enterobacter_phage	6.1e-14	54.3
WP_049430173.1\|1101109_1101577_-\|tail	phage tail protein	A4PE53	Ralstonia_virus	2.2e-08	29.6
WP_138969781.1\|1101579_1104027_-\|tail	phage tail tape measure protein	K4ICR4	Acidithiobacillus_phage	1.0e-19	26.2
WP_005412456.1\|1104147_1104438_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.5e-18	58.5
WP_005412457.1\|1104518_1105022_-\|tail	phage major tail tube protein	A0A193GYM4	Enterobacter_phage	1.4e-40	51.2
WP_154267724.1\|1105024_1106227_-\|tail	phage tail protein	A0A088FVH5	Escherichia_phage	1.8e-126	53.8
WP_138969780.1\|1106333_1106993_-	hypothetical protein	V9IQM3	Stenotrophomonas_phage	8.2e-17	32.9
WP_106549833.1\|1106994_1109196_-\|tail	phage tail protein	V9IQX0	Stenotrophomonas_phage	3.6e-117	40.0
WP_088431417.1\|1109203_1109983_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.2e-43	50.6
WP_088431415.1\|1109975_1110872_-\|plate	baseplate assembly protein	V5YTH6	Pseudomonas_phage	8.3e-81	56.8
WP_005408332.1\|1110874_1111213_-\|plate	phage baseplate protein	A0A193GYY8	Enterobacter_phage	7.8e-32	62.2
WP_088431413.1\|1111265_1111856_-\|plate	phage baseplate assembly protein V	A0A193GYL5	Enterobacter_phage	3.6e-24	38.2
WP_088431411.1\|1111852_1112407_-	hypothetical protein	NA	NA	NA	NA
WP_154267725.1\|1112525_1112855_-	hypothetical protein	NA	NA	NA	NA
WP_088431409.1\|1112760_1113138_-	hypothetical protein	NA	NA	NA	NA
WP_106549837.1\|1113134_1113620_-	glycoside hydrolase family 104 protein	D5LH07	Escherichia_phage	3.7e-43	56.9
WP_043033662.1\|1113616_1113967_-	hypothetical protein	NA	NA	NA	NA
WP_088431405.1\|1113963_1114413_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_088431403.1\|1114746_1115130_-	hypothetical protein	NA	NA	NA	NA
WP_088431401.1\|1115283_1115922_-	hypothetical protein	A0A1V0DYI4	Shewanella_phage	7.6e-20	40.5
WP_088431399.1\|1115963_1116191_-	hypothetical protein	NA	NA	NA	NA
WP_088431397.1\|1116265_1116541_-	hypothetical protein	NA	NA	NA	NA
WP_088431395.1\|1116541_1118878_-	toprim domain-containing protein	D5LH15	Escherichia_phage	8.1e-136	43.1
WP_005408344.1\|1119364_1119589_+	hypothetical protein	NA	NA	NA	NA
WP_012479313.1\|1119600_1119855_+	hypothetical protein	NA	NA	NA	NA
WP_088431393.1\|1120066_1120453_+	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_088431391.1\|1120582_1122721_+	TonB-dependent receptor	NA	NA	NA	NA
WP_088431389.1\|1122732_1124238_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_005408349.1\|1124405_1125686_+	ricin-type beta-trefoil lectin domain protein	NA	NA	NA	NA
WP_088431387.1\|1125752_1126886_-	MFS transporter	NA	NA	NA	NA
WP_012479318.1\|1126897_1127674_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_088431385.1\|1127831_1128479_+	Qnr family pentapeptide repeat protein	NA	NA	NA	NA
WP_088431383.1\|1128482_1129157_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_088431381.1\|1129244_1129943_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_062606609.1\|1130058_1131003_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_088431379.1\|1130941_1132321_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_005412480.1\|1132454_1133318_+	DMT family transporter	NA	NA	NA	NA
WP_088431377.1\|1133357_1134293_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.3e-07	21.2
WP_088431375.1\|1134400_1135918_+	MFS transporter	NA	NA	NA	NA
WP_033834825.1\|1136197_1136602_-	GFA family protein	NA	NA	NA	NA
WP_005408361.1\|1136773_1137748_+	DUF4105 domain-containing protein	NA	NA	NA	NA
WP_076739594.1\|1137747_1139769_+	hypothetical protein	NA	NA	NA	NA
WP_088431373.1\|1139856_1141278_-	MFS transporter	NA	NA	NA	NA
WP_005412484.1\|1141307_1141742_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
WP_005408365.1\|1141814_1142417_-	short chain dehydrogenase	NA	NA	NA	NA
WP_060381038.1\|1142515_1143391_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_088431371.1\|1143450_1144272_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_088431370.1\|1144290_1144968_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_004147099.1\|1145055_1146093_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_005408369.1\|1146193_1147336_+	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_005412488.1\|1147543_1148527_+	aldo/keto reductase	NA	NA	NA	NA
WP_024956078.1\|1148574_1149474_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_088431368.1\|1149702_1150617_-\|transposase	IS110-like element ISStma7 family transposase	Q75QL1	Wolbachia_phage	3.0e-25	33.8

DBSCAN-SWA_3

4268997 : 4276544

Acinetobacter_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005414695.1\|4268997_4269792_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.9e-69	55.6
WP_005411320.1\|4269867_4270899_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.1e-73	43.8
WP_012481439.1\|4270915_4271503_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.3e-66	58.9
WP_088429334.1\|4271505_4272285_-	DUF541 domain-containing protein	NA	NA	NA	NA
WP_005411323.1\|4272352_4273828_-	anthranilate synthase component I	S4VNU7	Pandoravirus	2.0e-39	31.5
WP_005414700.1\|4274129_4275059_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.2e-08	28.2
WP_087786704.1\|4275323_4276544_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	1.2e-122	57.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040430

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection