CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040431	Stenotrophomonas maltophilia strain sm454 chromosome, complete genome	10 crisprs	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	0	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040431_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040431_1

580148-580249

Orphan

Consensus_repeat	Method
GGTAGGTGCCGACCGTTGGTCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040431_1

>merge|NZ_CP040431|1|580148-580249|CRISPRCasFinder
GGTAGGTGCCGACCGTTGGTCGGCAGACCCCAATGCCCCGGTGGGTGCCAACCTTGGTTGGCACTCTTTACTGCCCTGGTGGGTGCCGACCGTTGGTCGGCA

>NZ_CP040431|1|1|580148-580249|CRISPRCasFinder
GGTAGGTGCCGACCGTTGGTCGGCA	GACCCCAATGCCCCGGTGGGTGCCAACCTTGGTTGGCACTCTTTACTGCCCT
GGTGGGTGCCGACCGTTGGTCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040431.1\|WP_005407925.1\|577282_577546_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_005415136.1\|586319_587111_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP040431.1\|WP_024957100.1\|576909_577200_+\|DUF3247-family-protein	unknown	unknown	gnl\|CDD\|371627
NZ_CP040431.1\|WP_060380130.1\|582175_583246_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP040431.1\|WP_154329224.1\|587954_589796_-\|TonB-dependent-vitamin-B12-receptor	unknown	unknown	gnl\|CDD\|273802
NZ_CP040431.1\|WP_154329223.1\|585393_586323_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP040431.1\|WP_005407930.1\|581469_581985_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	unknown	unknown	gnl\|CDD\|179953
NZ_CP040431.1\|WP_005407927.1\|578763_579465_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP040431.1\|WP_043033923.1\|574069_574633_-\|DUF3016-domain-containing-protein	unknown	unknown	gnl\|CDD\|378666
NZ_CP040431.1\|WP_099484932.1\|583596_584508_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293825
NZ_CP040431.1\|WP_154329222.1\|577702_578767_+\|methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_CP040431.1\|WP_154329221.1\|572819_573887_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP040431.1\|WP_012479030.1\|579461_580145_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NZ_CP040431.1\|WP_154329220.1\|571536_572841_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|234819
NZ_CP040431.1\|WP_099484933.1\|584646_585285_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|225462
NZ_CP040431.1\|WP_005407919.1\|570907_571387_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP040431.1\|WP_049395665.1\|574877_576866_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236842
NZ_CP040431.1\|WP_139726682.1\|587175_587832_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NZ_CP040431.1\|WP_012479031.1\|580261_581470_-\|beta-ketoacyl-ACP-synthase-I	unknown	unknown	gnl\|CDD\|181184
NZ_CP040431.1\|WP_072167748.1\|590278_590857_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010

Protein	Function_ID	Function_description	E-value
NZ_CP040431.1\|WP_005415136.1\|586319_587111_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.94719e-16
NZ_CP040431.1\|WP_024957100.1\|576909_577200_+\|DUF3247-family-protein	gnl\|CDD\|371627	pfam11607, DUF3247, Protein of unknown function (DUF3247). This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed at the N-terminal and internal regions.	9.01894e-24
NZ_CP040431.1\|WP_060380130.1\|582175_583246_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP040431.1\|WP_154329224.1\|587954_589796_-\|TonB-dependent-vitamin-B12-receptor	gnl\|CDD\|273802	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor. This model represents the TonB-dependent outer membrane receptor found in gamma proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). [Transport and binding proteins, Other, Transport and binding proteins, Porins].	0
NZ_CP040431.1\|WP_154329223.1\|585393_586323_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.19046e-83
NZ_CP040431.1\|WP_005407930.1\|581469_581985_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	3.90362e-120
NZ_CP040431.1\|WP_005407927.1\|578763_579465_+\|pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	4.64966e-75
NZ_CP040431.1\|WP_043033923.1\|574069_574633_-\|DUF3016-domain-containing-protein	gnl\|CDD\|378666	pfam11454, DUF3016, Protein of unknown function (DUF3016). This is a bacterial family of uncharacterized proteins.	5.21528e-65
NZ_CP040431.1\|WP_099484932.1\|583596_584508_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293825	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.30057e-98
NZ_CP040431.1\|WP_154329222.1\|577702_578767_+\|methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	5.70577e-66
NZ_CP040431.1\|WP_154329221.1\|572819_573887_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP040431.1\|WP_012479030.1\|579461_580145_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	1.64639e-59
NZ_CP040431.1\|WP_154329220.1\|571536_572841_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NZ_CP040431.1\|WP_099484933.1\|584646_585285_-\|NAD(P)H-binding-protein	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	2.05662e-66
NZ_CP040431.1\|WP_005407919.1\|570907_571387_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	2.38136e-70
NZ_CP040431.1\|WP_049395665.1\|574877_576866_+\|PAS-domain-S-box-protein	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	5.94228e-63
NZ_CP040431.1\|WP_139726682.1\|587175_587832_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	1.48466e-83
NZ_CP040431.1\|WP_012479031.1\|580261_581470_-\|beta-ketoacyl-ACP-synthase-I	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
NZ_CP040431.1\|WP_072167748.1\|590278_590857_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.22379e-34

>NZ_CP040431.1|WP_012479030.1|579461_580145_+|HAD-family-phosphatase
MTTIAALPFLPDAVIFDMDGLMIDSERVSLACWSQAADEFGLGLDEAVFLRMVGLGDRDTHALLRAQGIEDSVIEAVAARCHDLYEARTQTGLPLRPGILELLELLKAHAVPRAVATTTRQPRANRKLAAAGLLPYFDAVITSGDVARPKPAPDIYLLAAQRLGQAPERCLALEDSPAGTRAALAAGMTVIQVPDLVHPDEELRALGHRIVGSLVDAHALLLPLLPR
>NZ_CP040431.1|WP_005407927.1|578763_579465_+|pseudouridine-synthase
MKLVKLIANLGYGSRKQVQWMFREGRVTDADGEVLYADDQVPHEAIRVDGEPLDPPVGLSIALHKPAGYTCSTKDTGRLIYDLLPPRFRDRDPVLSTVGRLDRETSGLLLLTDDGGLLHRIISPKSKLPKVYEVELSDDLRGDEVALFASGTLMLESEKTPLLPAELEVLDARRARLVLHEGRYHQVRRMFAATGNHVQALHRSRVGGLDLQGLDEGQWRQLTSTDLDTLFAP
>NZ_CP040431.1|WP_154329222.1|577702_578767_+|methyltransferase
MASSDDAPLQTLFLPFSQGALRWPEGPVAFLRARDGWPLREVAGNREVHCEQSFAPFAQPLQQAAGWTVSGQLDDVAGKGRYPLVLVLPPRQREEARALFARALALVADGGRIVACQSNNEGARSGEGDLKQLTGLGGSLTKNHCRVYWTAPMQGQHDADLAKRWSALDAVRPIVGGCFLSRPGVFAWDRIDPASALLAEHLPADLAGRAADLGAGYGYLSRELLERCPKITALDLYEAEQRALALAELNLAPPPRPLPLRFLWQDVTAGIEPAYDVIISNPPFHTPSRADRPDIGQRFIAVAAQALRPGGRLYVVANRHLPYEYTLNESFGAVRVIAERDGFKLVEAVKGKGK
>NZ_CP040431.1|WP_005407925.1|577282_577546_-|hypothetical-protein
MRALFVGGVVDNSEMDLEGSHPPVHYPEDTGGGHSRYRLHQVGHGADGSVAYAVYGAPDLADDEVARVAEERAYARRFEATPTLFEH
>NZ_CP040431.1|WP_024957100.1|576909_577200_+|DUF3247-family-protein
MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRLPPRV
>NZ_CP040431.1|WP_049395665.1|574877_576866_+|PAS-domain-S-box-protein
MMVPAPEPDLHHGVLERINAGFCVIQVLFEGDRAVDYRFIEVNDAFERHTGLKDARGQRMSALEPNHEEDWFRIYGEVARSGRPAQFEMEARALGRSFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLRTLLGEAIGAQELVAEGKALDVNLQLPKQPSLVLGDATRLQQVFWNLLSNAIKFTPAEGRIDVQLQADGTHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVAAASEGHGHGATFTVRLPQHLPDAERRPLREVISGPILEPVIVEPYPLRGMHVLAVEDQPEVLEYLRRMLEEQGASVSAASSAGEALALLADTGHLQYHVMLTDIGMPGMDGYGLVRTLREDMGVDAATLPAVAVTALARADDRRRALASGFQEHVAKPYSVAQLVAAVRKVQVPRADSALH
>NZ_CP040431.1|WP_043033923.1|574069_574633_-|DUF3016-domain-containing-protein
MKRALVIALLAGALVVSGANAAARNVTGTDAPRALQANGPVSVKWEDPATFTEIRQSTNRFEAERGDWVQQLARYLQTTAAKPLQPGQTLDVTLVDIKRAGDYEPWHGPRARDIRVMRDIYPPRITLQYTLKDADGRIVSEGDARLSDSGYLQGSGLLTNSDPLRYEKRLIDDWVKRQLASQATAAR
>NZ_CP040431.1|WP_154329221.1|572819_573887_+|alanine-racemase
MRPARALIDLGALRSNYRLARELGGGKALAIIKADAYGHGAVRCAQALEGEADGFGVATIEEALELRQAGIRAPILLLEGIFEPSDMALVAEHDFWFAVGSPWQLEAVAAFDSPRPLTVWLKLDSGMHRLGVDVDSFRAAHARLSALPQVERIVLMTHLARADELDSERTHEQAATFARAIDGLHGETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDDTTLTERLRPVMTMQSKVIAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYPQFAPNGTPVLIDGQPGALIGRVSMDMLTVDLTAHPQAAVGSVVELWGSAPTLAELAPRCGVSAYQLPCAVKRVAKVYV
>NZ_CP040431.1|WP_154329220.1|571536_572841_+|FAD-dependent-oxidoreductase
MRVLVLGSGVIGTTSAWYLRQAGFEVTVIDRQPGPALETSFANAGQLSFGYTSPWAAPGVPKKAIGWLFEKHAPLAIKPGMDLAQYRWLWQMLRNCTHERYAINKARMVRMSEYSRDCLNELRAQVGIEFEGRDLGTTQLFRTQQQLDASAQDIEILAQYGVPYEVLDRAGIIQAEPALAHVDGLVGALRLPRDQTGDCQLFTRRLAQMCVDAGVEFRFDQDITGLEFDGDRITGVRIDGKLETADRFVVALGSYSPALVAPLGMRLPVYPLKGYSLTLPITDPAMAPTSTILDESYKVAVTRFDDRIRVGGMAEVAGFDLLLSQRRRETLELVVSDLYPKGGDLSRAQFWTGLRPATPDGTPVIGATPFRNLYLNTGHGTLGWTMACGSGRYLADLMSARQPQISTEGLDIFRYGQYGHAPQQENRTCVLPAR
>NZ_CP040431.1|WP_005407919.1|570907_571387_-|winged-helix-turn-helix-transcriptional-regulator
MATRTRELDKIDRKILRILQAEGRISFTELGERVGLSTTPCTERVRRLEREGVITGYHAHLDPAAVKASLLVFVEISLAYKSGDIFEEFRRAALKLPNVLECHLVSGDFDYLLKARISEMASYRKLLGSTLLTLPHVRESKSYIVMEEVKETLSLPIPD
>NZ_CP040431.1|WP_012479031.1|580261_581470_-|beta-ketoacyl-ACP-synthase-I
MRRVVITGMGITSCLGNDLDTVSAALREGRSGITALADHAEAGLRSQVGGRVDLDLEALIDRKQKRFMSDAAAFAYLAMRDAIADAGLSAEQVSSLRTGLIAGSGGGSSEWQIGAVDLLRERGVRKVGPYMVPRTMCSTVSACLATAYQIKGVSYSLSAACATSAHCIGAAADMIRHGAQDIMFAGGGEDLHWSMSVMFDAMGALSTSFNETPASASRPYDKDRDGFVIAGGGGMLVLEDYDHAVARGAHIHAELIGYGVTSDGADMVAPSGEGAVRCMKMALQGVDRPLDYLNTHGTSTPLGDVTELNAIREVFGDAVPPLSSTKALSGHSLGAASVHEAIYCLLMMRDGFVAGSANIGELDPKVESFPILRESREQKLDTVMSNSFGFGGTNAALVFGRV
>NZ_CP040431.1|WP_005407930.1|581469_581985_-|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA
MTRLHAFNREQLLASARGELFGTAAGRLPNDPMLMFDRITDIREDGGPHGKGMVRAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLTGFFLTWLGAPGKGRALGCGEVKFTGQVLPEAKLVRYEIDISRVINRKLVMAQSDARMYVDDREIYSARDLRVGLFTETGSF
>NZ_CP040431.1|WP_060380130.1|582175_583246_+|DNA-polymerase-IV
MTRLRKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTEPKSGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRVPGVGKVMEGKLAARGIATCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFAEDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLKLKTAQFRILTRSFTPERPPESMEELRDIALALRARVDLPAETRYRLVGVGLGGFREKEPVVQGELFEH
>NZ_CP040431.1|WP_099484932.1|583596_584508_-|MBL-fold-metallo-hydrolase
MRTAALLLPLALAASFTSAPLLAAPATAAPAAATKSQLHLQTFHPGPQAMFSVSSVLIEGRRDAILVNAQFGASDARKLVELIRASGKQLTTIYISHGDPDYYFGLATLQDAFPQARIVATAQTVAHIQQTQAGKLAYWGPKMGADVPSRIVVPQVLDGDALQLEGQRLPLIGLDGPTPDRTVLWVPSLRTIVGGIPVVAGEHVWMADTQTPKSHADWLQTLQRLQALKPKVVVPGHYAPGAALDASALVFTADYIRAFDAETAKAKDSAALVKAMQARYPKLAGVASLELSAKVAKGEMQWP
>NZ_CP040431.1|WP_099484933.1|584646_585285_-|NAD(P)H-binding-protein
MKIALVGSTGNIGRQIARHALANGHELTVIVRSAQDLPAELAGAHPVIASLDDQDALVAAIAGHNVLASAYGPRPGDDIGRVGDVAAQLAAAARKAGVPRLVVVGGAGSLEVAPGVQLVDTPNFPEAYKPYALAHLEAFNRLQAVDDLDWTFFSPAAEIGPGEERGQYRVQPKAFLADASGHSRISYADYGAAFVAELEAQQYPKQIITAAY
>NZ_CP040431.1|WP_154329223.1|585393_586323_+|LysR-family-transcriptional-regulator
MDRLTAMTVFVEVAERGSLTAAAEVLDMSRAMVTRYLAEVEGWLGARLLHRTTRRVSLTGPGEAALARFRQMLAIGEELQGELASDDPEPHGTLRVTASVSFGQSHLARAVAGFVARHPAARIELLLVDRTVNLIEERVDLAVRIARQIDPSLIARRLATCRSVLCATPSYLQARGTPTAPEHLAAHNCLTHHYVGKSLWQLHRDGRSLSVAVGGNISANEASLLLEAVRAGAGIAMLPTYQVAPLLRSGELIELLPGFSLDELGIHAVYASRRQQPAIMRRFLDYLAECFASPAFQDLDWRPPGKENT
>NZ_CP040431.1|WP_005415136.1|586319_587111_+|class-I-SAM-dependent-methyltransferase
MNHGQALIDHNRAAWDRQASEVREWSRPVESSTIAAAREGRWQVHLTPRALPLDWLGDVRGRRILCLASGGGQQAPVLAAAGADVTVFDLSDGQLEQDRRVAARDGLQLRTVQGDMRDLHVFANDSFDVVFHPISNLYVPDVRPVWTECRRVLARDGMLMASFYNPVLFVGARDPQLDAQGLIRPQYAIPYSDLEDLPAAEREAKLARGDALTFGHSLTELIGGQLDAGFVIDRFMEDWQPKPRFLIDRYLPTFLATRARRIG
>NZ_CP040431.1|WP_139726682.1|587175_587832_+|phosphoglycolate-phosphatase
MSYPYPLVVFDLDGTLVDSAADIAEALNRTLEAIGMARVPEATVLGWIGDGVRRLVEQAVHAAGREVDLAEVMPVFMVHYRECLLRSPRLFDGVADALAQLRARAVPLAICTNKPEALVPPLLQHLGIGDAFALVLGGDSLPQRKPSGEPLRHIAAHFGLPVDACLMVGDSLTDYRAAEDAGMPIALVRYGYPRGLDLATAHAVAVIDDLRELPGLQG
>NZ_CP040431.1|WP_154329224.1|587954_589796_-|TonB-dependent-vitamin-B12-receptor
MKLQSRMLSLAVLAALPALAQAADDTTALDQILVTATRTPIALQDSIAPAQVIDRAQIESSQATSLQELLRGRAGINLTNAGGLGKQSSLFLRGTNSGHTVVLVDGVRINSADLGLAMYQDLPLAQIERVEIVRGPQSSLYGADAIGGVIQIFTRRNQGDFAPHFQLGGGSNGLREASGGIGGGTERGWFGADIAYQHSDGIDACRGSATLFTGCFADEHDRDGYRNLSKSLRGGYTFNDQWNVEGSALRADGKNHYDGYYNYSETRQQVLAGKVRYTPSERLAFTANVGRSDNESDNFGDFGARGSAQTHRDSASLQGDFALAEGQLLSTGVDWSEDNLDGSSAGYRVDSRRNTGVFVQYQGRFGRHQLQASARNDDNQQFGNHATGSLGWAMELGHGLRVNASYGTAFKAPTFSDLYDPWSGVPTLNPEKSKSTNLGVSQQGQGWHWGLDVYETRIDDLITYDAATFRMQQVEKARIRGAELTGGVLLAGFDINAQLSYTDPRNRTGGSTQFDNWLPRRAQQTARLDLDRRFGAFRAGLTVQGAGKRYDDAANAVKVGGYGTLDLRAEYALTPSWSLLARAANVFDRNYETVAWFNQPGREYQLSVRYQPK
>NZ_CP040431.1|WP_072167748.1|590278_590857_+|histidine-phosphatase-family-protein
MILDLVRHAGNGRDEFLDGRSDPPQLAGLPQELVEAYAEQRWERVISSPRLRALHTAMALATPRGLDVEADEEWEELDFGDWDGQSLFDLPEDALAAFHADPHAFPPPNGESWGHFERRIARALDRLLDDDDPVPTLVVSHGGPLRMVLSQVCGLPMSLCWALRIDHGTRLRVWLERGEIGLVGELLELQQP

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Crispr_ID: NZ_CP040431_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040431_2

620481-620695

Orphan

Consensus_repeat	Method
CGACGCCAAGCTCGCCCGCCAGGAAGCCGAGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040431_2

>merge|NZ_CP040431|2|620481-620695|PILER-CR
CGATGCCGCGCGTGCCCGCCAGGAAGCCGAACAGCTGCGCATGCAGGCACAGATGCAGGCCGAGGAGGCTGAACGCCTGCGCCAGGCCGCCGAGGCCGAGACCCTGGCCCGCCAGGACGCCGAGAACGCCCTGACCAGCGTCGCCGGCAAGCAGCAGCAGCGCCTCAGCGCCGCCCAGCAGAACGCCGCCAAGCTCGCCCGCGAGGAAGCCGAGC

>NZ_CP040431|2|1|620481-620695|PILER-CR
CGATGCCGCGCGTGCCCGCCAGGAAGCCGAAC	AGCTGCGCATGCAGGCACAGATGCAGGCCGAGGAGGCTGAACGCCTGCGCCAGGCCGCCGAGGCCGAGACC
CTGGCCCGCCAGGACGCCGAGAACGCCCTGAC	CAGCGTCGCCGGCAAGCAGCAGCAGCGCCTCAGCGCCGCCCAGCAGAACGCCGCCAAG
CTCGCCCGCGAGGAAGCCGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040431.1\|WP_060380108.1\|613960_614950_+\|2-keto-4-pentenoate-hydratase	unknown	unknown	gnl\|CDD\|375715
NZ_CP040431.1\|WP_012479059.1\|628572_629883_+\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|211420
NZ_CP040431.1\|WP_012479058.1\|627402_628425_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379276
NZ_CP040431.1\|WP_012479057.1\|626780_627368_+\|CatB-related-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
NZ_CP040431.1\|WP_012479056.1\|625389_626784_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213187
NZ_CP040431.1\|WP_004141526.1\|618531_619659_-\|PilT/PilU-family-type-4a-pilus-ATPase	unknown	unknown	gnl\|CDD\|227341
NZ_CP040431.1\|WP_024957082.1\|605263_605626_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|376501
NZ_CP040431.1\|WP_099484940.1\|608532_611127_+\|peptidase-M14	unknown	unknown	gnl\|CDD\|349457
NZ_CP040431.1\|WP_012479055.1\|624569_625400_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP040431.1\|WP_154329230.1\|631799_634094_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_154329228.1\|605818_608458_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|366183
NZ_CP040431.1\|WP_060380266.1\|629879_631580_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|377447
NZ_CP040431.1\|WP_099484604.1\|617118_618402_-\|putative-DNA-modification/repair-radical-SAM-protein	unknown	unknown	gnl\|CDD\|188431
NZ_CP040431.1\|WP_005407961.1\|619780_620146_+\|DUF4398-domain-containing-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_099484603.1\|615677_617138_-\|UdgX-family-uracil-DNA-binding-protein	unknown	unknown	gnl\|CDD\|274850
NZ_CP040431.1\|WP_099484941.1\|611686_613102_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236722
NZ_CP040431.1\|WP_005407965.1\|621888_623259_+\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223110
NZ_CP040431.1\|WP_060380110.1\|614964_615633_+\|maleylacetoacetate-isomerase	unknown	unknown	gnl\|CDD\|273527
NZ_CP040431.1\|WP_005407964.1\|621351_621588_+\|YdcH-family-protein	unknown	unknown	gnl\|CDD\|377305
NZ_CP040431.1\|WP_154329229.1\|623382_624564_+\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|366438

Protein	Function_ID	Function_description	E-value
NZ_CP040431.1\|WP_060380108.1\|613960_614950_+\|2-keto-4-pentenoate-hydratase	gnl\|CDD\|375715	pfam18288, FAA_hydro_N_2, Fumarylacetoacetase N-terminal domain 2. This is domain is found in the N-terminal region of Fumarylacetoacetate (FAA) hydrolase (pfam01557). Family members of this domain include Pseudogulbenkiania ferrooxidans and Cupriavidus gilardii.	8.15489e-35
NZ_CP040431.1\|WP_012479059.1\|628572_629883_+\|glycosyl-hydrolase	gnl\|CDD\|211420	cd11579, Glyco_tran_WbsX, Glycosyl hydrolase family 99-like domain of WbsX-like glycosyltransferases. Members of this domain family are found in proteins within O-antigen biosynthesis clusters in Gram negative bacteria, where they may function as glycosyl hydrolases and typically co-occur with glycosyltransferase domains. They bear resemblance to GH71 and the GH99 family of alpha-1,2-mannosidases and may share a similar cataltyic site and mechanism. The O-antigens are essential lipopolysaccharides in gram-negative bacteria's outer membrane and have been linked to pathogenicity.	0
NZ_CP040431.1\|WP_012479058.1\|627402_628425_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379276	pfam13578, Methyltransf_24, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.85935e-31
NZ_CP040431.1\|WP_012479057.1\|626780_627368_+\|CatB-related-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	9.04197e-70
NZ_CP040431.1\|WP_012479056.1\|625389_626784_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	9.23434e-115
NZ_CP040431.1\|WP_004141526.1\|618531_619659_-\|PilT/PilU-family-type-4a-pilus-ATPase	gnl\|CDD\|227341	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].	2.5955e-166
NZ_CP040431.1\|WP_024957082.1\|605263_605626_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|376501	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.	4.85662e-49
NZ_CP040431.1\|WP_099484940.1\|608532_611127_+\|peptidase-M14	gnl\|CDD\|349457	cd06238, M14-like, Peptidase M14-like domain; uncharacterized subgroup. Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavage. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.	4.63024e-97
NZ_CP040431.1\|WP_012479055.1\|624569_625400_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	3.49134e-49
NZ_CP040431.1\|WP_154329228.1\|605818_608458_+\|TonB-dependent-receptor	gnl\|CDD\|366183	pfam00593, TonB_dep_Rec, TonB dependent receptor. This model now only covers the conserved part of the barrel structure.	4.13096e-37
NZ_CP040431.1\|WP_060380266.1\|629879_631580_+\|glycosyl-transferase	gnl\|CDD\|377447	pfam05045, RgpF, Rhamnan synthesis protein F. This family consists of a group of proteins which are related to the Streptococcus rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O polysaccharides of phytopathogenic bacteria and are regarded as pathogenic factors.	3.96591e-61
NZ_CP040431.1\|WP_099484604.1\|617118_618402_-\|putative-DNA-modification/repair-radical-SAM-protein	gnl\|CDD\|188431	TIGR03916, hypothetical_protein, putative DNA modification/repair radical SAM protein. This uncharacterized protein of about 400 amino acids in length contains a radical SAM protein in the N-terminal half. Members are present in about twenty percent of prokaryotic genomes, always paired with a member of the conserved hypothetical protein TIGR03915. Roughly forty percent of the members of that family exist as fusions with a uracil-DNA glycosylase-like region, TIGR03914. In DNA, uracil results from deamidation of cytosine, forming U/G mismatches that lead to mutation, and so uracil-DNA glycosylase is a DNA repair enzyme. This indirect connection, and the recurring role or radical SAM protein in modification chemistries, suggest that this protein may act in DNA modification, repair, or both. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP040431.1\|WP_099484603.1\|615677_617138_-\|UdgX-family-uracil-DNA-binding-protein	gnl\|CDD\|274850	TIGR03914, SPO1_DNA_polymerase-related_protein, uracil-DNA glycosylase family domain. This model represents a clade within the uracil-DNA glycosylase superfamily. Among characterized proteins, it most closely resembles the Thermus thermophilus uracil-DNA glycosylase TTUDGA, which acts uracil (deamidated cytosine) in both single-stranded DNA and U/G pairs of double-stranded DNA. This domain may occur either as a stand-alone protein or as the C-terminal domain of a fusion with another domain that always pairs with a particular radical-SAM family protein.	4.52722e-99
NZ_CP040431.1\|WP_099484941.1\|611686_613102_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	7.94153e-174
NZ_CP040431.1\|WP_005407965.1\|621888_623259_+\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	1.19921e-132
NZ_CP040431.1\|WP_060380110.1\|614964_615633_+\|maleylacetoacetate-isomerase	gnl\|CDD\|273527	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism. [Energy metabolism, Amino acids and amines].	4.98494e-111
NZ_CP040431.1\|WP_005407964.1\|621351_621588_+\|YdcH-family-protein	gnl\|CDD\|377305	pfam04325, DUF465, Protein of unknown function (DUF465). Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.	6.81491e-09
NZ_CP040431.1\|WP_154329229.1\|623382_624564_+\|cystathionine-gamma-synthase	gnl\|CDD\|366438	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	0

>NZ_CP040431.1|WP_005407961.1|619780_620146_+|DUF4398-domain-containing-protein
MRHSLYVMAFAFALSAPAWAQDGAMELAQARQAVDKATQADADQYAPDLIGLARQGLEQAQRAAGDRRERKNAPAMALRAAADADLARVRSEEATVTAQLQLRRNEVNQLQRQLSTGEDRR
>NZ_CP040431.1|WP_004141526.1|618531_619659_-|PilT/PilU-family-type-4a-pilus-ATPase
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALPDAGRFRVNVFKQRGEVGMVIRAIRSRIPSIEELNLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTTTGHILTIEDPIEYLHKHKMSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERILNFFPESAHKNVLMNLALNLRAVISQRLVKNKEGRRLPATEVLLNTPMIRDLLRRGQVHEIKAAMEASLEEGMESFDQCLFRLAKAGTIEQEEALRAADSRDGLALKFRLSEGSSGEHDPYADFSAGAPSITHGF
>NZ_CP040431.1|WP_099484604.1|617118_618402_-|putative-DNA-modification/repair-radical-SAM-protein
METIRKLAILADAAKYDASCASSGSGKRDSRASGGIGSTEGMGICHSYTPDGRCVSLLKILLTNFCVYDCAYCVNRVSSNVPRARFSVDEVVTLTLDFYKRNYIEGLFLSSGIIRNADYTMEQMVEVARQLREEHRYAGYIHLKTIPEASPELLASAGRYADRLSINVELPTEAGLSALAPEKTVHSIRGAMGELRWRIEEAKEARKAPAAVAPTASRSARPRPPRFAPAGQSTQMIVGADGANDQQILASADSLYGSYRMRRVYYSAFSPIPDASRQLPLQPPPLQREHRLYQADWLLRFYGYRVDEITDTTQGGMLDLDIDPKMAWAIRHPERFPVDLNRAPKEMLLRVPGLGVRNAERVLMARRHGRLRVADIARLKAPMSKLLPFVLLADHHPRKALDDPAALRAQLAPPPRQGSLFDAPPAA
>NZ_CP040431.1|WP_099484603.1|615677_617138_-|UdgX-family-uracil-DNA-binding-protein
MHRRQPDAPRWSQRVDPPWSLQAWRDGARDALLRGVRPEQLDWLEGGEASLLDAPPVQQAPVAAQASVPGVPREFLELADTCLCHGEPQRLSLLYRLLWRITHGERAVLTNPADADVLRAMTLAQAVRRDTHKMKAFVRFREVPGQPDAFIAWFEPQHHIVDRVAPFFARRFTGMRWAILTPSRSVAWDGQALTFGPGARREDAPAEDAREALWQTYYASIFNPARLNTRMMMQEMPARYWRHLPEAQLLPRLVRDAGDRVQEMHDRPAQAPQRRIPMRGDAAAARPDTASLQTLRRQASACRQCPLWETATQTVFGQGPADARVMVIGEQPGDTEDLRGQPFAGPAGQLLDRALAELGIDRATLYLTNAVKHFHHERRGKVRLHKRPESRHIQACRPWLMGEIARVRPQLIVCLGATAAASVFGRDFNLSRDRGRWHTLEEGTRGYATVHPAWVLRQGDGARRERAYALFRDDLAQLLQKGDGGD
>NZ_CP040431.1|WP_060380110.1|614964_615633_+|maleylacetoacetate-isomerase
MEIPVDDGIVLYTYWRSSAAYRVRIGLELKGLAWEARPVHLVRDGGEQHLDAYRALNPQQQVPTLLHEGHVLTQSLAILEYLDERFPQVPLLPADAAGRARVRALAQLVACDIHPINNLRVMQYLERDLQLPADARMQWTLHWMAEGFAAMEAMLANSRDTGTFCHGDRPGLADLCLLPQLYNAHRFGLDLAPYPTLRRIEAACQALDAFDRARPENQPDAA
>NZ_CP040431.1|WP_060380108.1|613960_614950_+|2-keto-4-pentenoate-hydratase
MKLGSLKEGGRDGTLIVVSRDLRHGVRATGIAATLQQALEDWSHIAPRLNALYESLNAGDADGVFDLDPQALAAPMPRAYEFVDGSAYLPHVERVRRARGAEVPESFYTDPLMYQATSAGFYGPRDAVKVVSEEYGIDLEAEIVVITDDVPMAATPEQAAGHIQLIGLVNDVSLRNLIPGELAKGFGFLQSKPRSALSPVFVTPDELGAAWQDCKVHLPLLTHINCKWFGAPEAGVDMQFNFAQLVAHAAKTRPLGAGTIVGSGTIANEDTSKGASCFAEQRVVETLRDGKPSTPFMSFGDVVRIEMLDAAGNSIFGAIEQRIEQAAKP
>NZ_CP040431.1|WP_099484941.1|611686_613102_-|DEAD/DEAH-box-helicase
MSFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQHLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLHLLAQDSREQTLVFARTKHGSDKLASFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKLLRAIVRLLGRDMDIRDVPGFELQVPIRWGNSAPGKAEHDTGERAPRKSHARRPHGDAPRHAHAGPKKAGGGRREGGGNGQQRAGAGQGQRRGGGGNGGGRGRGQGGNGGGRAG
>NZ_CP040431.1|WP_099484940.1|608532_611127_+|peptidase-M14
MSLHRRAVLPLLLAAATALSSPQPAQAQSAYFFPQVTNAAAFDAAVPTPEQFLGYPIGSRYTRHDQLVAYFQELAKRSDKISVREIGRSYEGRPLLIATVTAAGNHARLEQIRQQHATLADPAQPRSAAGDSPVVVWLGYSVHGNETSSAEAAMLTAYYLVANRSAETQQWLQQAVVLFDPAQNPDGRDRAANWHNAWASDPASADPADKEHVEPFPQGRTNHYFTDLNRDWLALTQQDSRPKVEVFHQWYPNVQIDFHEMGKDSTYYFEPSPKSMHSPLIPAASYEFNKTLAKYHAQALDALGSLYYTGENFDNFSPVYGSTYPDFHGAVGVTVEQASSRGRVQESVNGLLTFPFTIRNQVATGLGTVRGAVTERSGLFDLQKQFFQSALKQAAQQPVKSFVFGDAHDPALTRRLLELLLLHRIEVRALDRAVTVDGQRFDAGSAYVVPVQQAQFRLVHSIFAETPPIKGDVFYGSTSYAIAPAYGVAFAGSRGRIEGGARVAALPVEQGAVLGGEAGFAYAIDWRDYNAGRALAALQGKGVNARAAFQPFTTATAQGDVSFAAGSLVIPVAGQSLQGAALLETVTSAAREAGVQVHALSSGRSREGIDLGSDGVKALRKPAVALVMGEGVAATEIGSAWFLLDQQLQLPASKLDPQQLGKVPLDRYTTIVLSGGTYTGVDATAVAALKRWVQAGGSLVTYGSASKWAIEQKLADGEKLGKEEDAADESRRAFGDQRDIAAIERISGNILSADVDTSHPLAFGVPRRQLAINKENTVTLQPSANPFSTVVRIDTPPRVNGYLSERNRTRVAGSAWLLVSAQGQGNVVLFADDPAHRKYWHGTDRLLINAIFFGNLVNPSKARG
>NZ_CP040431.1|WP_154329228.1|605818_608458_+|TonB-dependent-receptor
MPKHTLLVAALAVALAAPLSAAAETSADASGEASTLAAVRVTGSNIKRTDTEASNPVQVIGRQQLEQTGKATVADVLRSISANTGNASNETTNNGWASGSAGIGLRGLSQKNTLVLLNGRRLANYGFPAGGLSDTFVDLNALPLVAVERIEVLKDGASAVYGSDAVAGVVNIITRQNFEGAEIGGSFGGADQGGLHEQNLKFVGGLGDLDTDGYNILFSLQGYNRERLDQDERNLTRSGIYTDKPGGRWNGWSAKGARYLVNGVSVPMLDANGNCPTGTTRVASAPIDGLAGDTCGFNQAPFTTLIPSTKRYQAYANGTFRLNDNVEAFGEVLYSQIKSAAWFGSSPFFTLESGRFALNANSGLAEPVSSLLPANNPYNPYGRAIPIEYTFFDLGGTIKTNRSTAYRGVFGLRGTTASWDWEVAAFGARSSERESVSGGFANRWALADALATGSYNLLNPAATPQSVRDSINIATLRPAESKLQGIDAKISGGLGHTWAGEIGFAAGAEWRREKLDSNNPWQIDAGLQVRPAIAEVHGKRQVSAAYAEVNVPLASTLELSAAARADHYDDFGDAFSPKIGLRWQPLDVLLVRASASKGFRAPSLSENSNSTSIAYGSVVDPRDPDVPGSRQNPTFFTVGNNELKPERTRSVNFGVVLSPWANTNLSVDYYRIQLDNLVGTNNTQTLVNDNVAGAVQRDERGKLQAVYNRYQNLSELKTSGIDVELRQRIPTAALGDFTVSSAYTHVRDYRRPTVVGGPLVDYAGSNLGATLPKDKATTTLDWKYGDFNAAVTWYYTSSYRQEASTAAKAVQQRVGSYSQYDLYLAYTGIDKLTVYAKVQNLADKTPPYDASFPGIRAPYDFSQYDLRGRYFTLGFDYRF
>NZ_CP040431.1|WP_024957082.1|605263_605626_-|6-carboxytetrahydropterin-synthase-QueD
MEIFKVFMLEAAHRLPNVPPGHKCARLHGHSFRVELKVEGEPGAQTGWIMDFGDVKAAFQPIYDRLDHHYLNDIPGLENPTSENLAVWIWNELKPSLPALSEIIVHETCTSGCRYRGPTA
>NZ_CP040431.1|WP_005407964.1|621351_621588_+|YdcH-family-protein
MFEDQPQSEIDARRARDPEFRALHDQHRKLNKKCMDAELGVLPIDDVTLGRMKREKLLAKQRLLRMYETPLPTTSPTL
>NZ_CP040431.1|WP_005407965.1|621888_623259_+|pyridoxal-phosphate-dependent-enzyme
MPIHSSVLELIGQTPIVKAQRLDTGVCELYLKLESANPGGSIKDRIGLSMIEAAEQRGDLKPGATLVEGTAGNTGLGLALVAQQKGYKLILVVPDKMSREKIFNLKAMGAEVRLTRSDVAKGHPEYYQDLAKTIAEQTPGAYFINQFGNPDNPAAHEFGTGPEILEQMGGDLDAIVFGCGSSGTMTGLSRAFAKLSPKTELVLADPVGSILAEYINDGVLNDKSGSWLVEGIGEDFLPSISDFSRVKKAYAISDAESFHTARELLGKEGILGGSSTGTLLAAALKYCKEQTTPKKVLVLVCDTGNKYLSKMYNDYWMLDNGFLERPQHGDLRDLILRPYGQRDTVVIGPNDLLTTAYQRMKLYDVSQLPVMDGDQLVGIVDESDVLLHVYGDEARFRDTVATAMVSKLDRLDVKSPIEALLPVFDRGQVAIVMDGNAFLGLITRIDLLNYLRRRVQ
>NZ_CP040431.1|WP_154329229.1|623382_624564_+|cystathionine-gamma-synthase
MSNATSQDRALALATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVASLEGGTRGFAFASGMAASSTVIELLDAGSHVVAMDDIYGGSFRLFERVRRRTAGLDFSFVDLTDLAAFEAAITPKTKMVWIETPTNPMLKIVDIAAVAAIAKRHGLIVVVDNTFASPMLQRPLELGADLVLHSATKYLNGHSDMVGGMVVGDNADLAEQMAFLQNSVGGVQGPFDSFLALRGLKTLPLRMKAHCANALALAQWLDKHPAVEKVIYPGLPSHPQHELAGRQMAGYGGIVSIVLKGGFEAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGVEELGDLQVDLERALAGTAA
>NZ_CP040431.1|WP_012479055.1|624569_625400_+|ABC-transporter-permease
MTVSSANTSVSPLAMVRSFLGNRVLIYQLAKREVISRYRGSLMGLAWSFFNPLLMLAVYTFVFSVVFNARWGGDVAHKGDFAIILFVGILVHGIFAECVNRAPSLIVGNASYVKRVVFPLDTLPWVAMGAALFHALVTLVVLLLAQLLIRGVLPVTALYFPLVVFPLVLFTMGLAWLLSALGVFVRDIGQMTGIFTTVLLFLAPVFYPVHALPENMRKWIYLNPLTFIIEQSREVLIWGKAPDFIGLGKYAIFAAVVAWLGYVCFHKMRRGFADVI
>NZ_CP040431.1|WP_012479056.1|625389_626784_+|ABC-transporter-ATP-binding-protein
MSSNEPVREPDDLAIRVSGVTKCFQVYSQPQDRLKQAVLPRLSRLLGRPGGMYYREFWALKGVDFEVRRGDTVGIIGRNGSGKSTLLQIICGTLQPTHGEVTVRGRVAALLELGAGFNPEFTGRENVYMSASILGLSREEIDRKYDDIVAFADIGDFLEQPVKTYSSGMYVRLAFAVIAHVDADILVIDEALAVGDAIFVQKCMRYLRKFRENGTLLFVSHDTSSVLNFCQSAVWLDRGDMRMHGTAQETCNAYIEYCSQEVYGDTVKLQSRQAAARAAEASPGTPSPARIEKDLKVELFDNVANSAGWQSGVASIDSVTLCNEDGEPFTTFAGGEHVVLKIRATAHDPLTSPLIGFFVKDRLGQSLFGEHTYTYIQPPMEVEGGTGLEASFRFTLPLLPNGEYSMTVSIAEGDPYTNTQHAWLHDAVLIRVASPKLRYGLVGIPFEEVTMVRTRQPQPTGEPQ
>NZ_CP040431.1|WP_012479057.1|626780_627368_+|CatB-related-O-acetyltransferase
MSASQGPTVTEAHGFIPPLASTDPRISVGRYTYGSPQLKVWSEGERIEIGAFCSIADDVVIFGGGEHRLDWVTTYPLRIALNSPGAGHDGHPHTKGPTRIGNDVWIGHGAMIVSGVTVGDGACIGAGAVVSRDVPAYAVVAGNPAKVVRTRYDEPTIARLRAIAWWSWPIDRIRAFESLLCSGDVEAFIAAASAP
>NZ_CP040431.1|WP_012479058.1|627402_628425_+|class-I-SAM-dependent-methyltransferase
MNDFPLSNSMLISPRELSLSAWLGHIPFASWLVEQLQPQSIVELGTHRGSSFLALCQAVQEQGLTARVFAVDTWEGDEHAGYYGDEIYNALREYQQRNYAGISEMLRMRFNEALPYFADGSIDLLHIDGLHTYEAVREDFETWLPKLSDRAVVIFHDTCVRERGFGVWQYWSEISQQYPAFEFTHTHGLGVLLVGKQRVPALADLAARAAAGDFAPINRLFDTLGSNIKRAEEVERVNAGLMDARNEVNRLGTLGHELQQRCLQLEQDVRDGRELVRQAEQQVQQQRERAEQSAVTAEDLRRIVAEERARMVEEVQAALGPQLDSQARSLDRLLQPWWRR
>NZ_CP040431.1|WP_012479059.1|628572_629883_+|glycosyl-hydrolase
MSTVKPICFYLPQYHPVAENSEWWGPGFTEWTNVAKGKPNFAGHYQPHIPRELGFYDLRLIDNMRAQAELASLYGIHGFCFYYYWFDGRRILELPLDNYLKSDIEFPFCVCWANENWTRTWDGLEKDVLLEQKHGADEDRRFLEDILPLLKDRRAIKVDGKPMLLVYRADLFPDAKETVARWRQVARENGVGEIHLVAVQFYGIVDPRDWGYDAAAEFPPHTFIGAENRLTRPIDITNPEFRGGLVDYRKVVAQSISRPKPDFRWYRGIVPSWDNTARRQHTSHTLVDASPSIYQYWLRRLVEYTRVNNAPEDQILFINAWNEWGEGCHLEPDLKHGLAYLEATHAALNGAGSDEMLMKDEALLRALGGERMKALLDDRERLVNDVVLLSAEVRRTNPQGISSVPRPGLRAFIGRCLRPFPRLRSFAVRVYHAWHA
>NZ_CP040431.1|WP_060380266.1|629879_631580_+|glycosyl-transferase
MSSVRRVAVVAHFDAEGRLTDFTRRLLEGLLRHAERIVLVSTRLASDQAVGLDERITVIVRENVGYDFYSFRTGVLAVEALYAYDELIIANDSVLVIDPEGLDRAFTKMQGVECGAWSMTESQQVSRHLQSYFMVFRKDVFFSQYFHQFWRDVRVLDDKWEIILSYEIGLTQWLLHHGVRIASAFQPGADGMQKLAARLKRKRERDAAPDSIAAPGAFEIQQANLVHYLWDDIYRQFGFIKTEVLRDDPNGVQDVGLSSLIADPVRLGRVEEEVARMRATRVNAMPLLAQSSDGISQEELQRYGVGAIPADKLKSRFAIVLHLYHLDLIESIQGYMKNMIVDHDLFVSVKSVADRRVAVRFFEERKVRAFVFVHPNIGRDVGPFVSLLNTGLLDRYDAVCKIHSKKSVYHDGGGQWRDELMKSLLGSSHTVLKILRAFRHDSSCGIVGPEHAYVSNARFWGGNEERLRRLAAETGIDDARIRLGFFAGTMFWFRPAALYALRERALALSEFDPEAGQLDATLAHVIERLFVLWVEQAGYFAATTRTPDAALRHENYANQGISVLPA
>NZ_CP040431.1|WP_154329230.1|631799_634094_+|hypothetical-protein
MHPDDPGADALRSGDAHRRCRRFLGLRDERVATAEHLRFGKDIIFTFGPLASIYTEVYHPATDHLMIGGAMLLSVAVFAGLFAVTSPHRRVLLPLFPFLVALTWLPDWDGWRDAVFMLLPLLLPITVARGQETGKPNWAAIILLAIAIAILPLIKGSLSVPAALASLVAVLLCWRESPRLAITLFVVEVGVLIAAWLTAGQSLLDLPVYFLAQMPLISGYTDGMSVSVDGRPLNIVIYLLASVMLVALSTFGGVRRRWYLPVLVALYLFVIFKASFVRHDPPHALIASSALLLMGALLYLVPGSGRWPGIAAMAVGALGYGLLAFAFLPLDPVASLARVGSKFELSVEAAWRRATEPAALAKEYPRRLVLLGDRPPFKGLSGDADLYPWDLSPLLASGASWKPRPVPQSYAAFSPPLLDANAEHLRSSPPTRIFFNINPIDQRYPSMEDGASWLTLLGGFRAQRIDAGYALLSRRDAVAETLQPRPVTSTEVRMGEDVAVPENQGPVWASIDVQPTLLGRLFSILYKAPELTLQVRYDNGETASYRFIAGLAKSGFLLSPTITDVNDFVALTSSHRDDLLGNRKVVAMGIRGASGTRLMWKSAVRVSFARLDVPTAPEADAALAGIWKHGDAVESYVAAGDCHIDTVNQLQAEGGTLDLPAGLVKVRGWSALDGARGRPNDGAFLLASATDGRTWMLPANRVPRPDVAAYFKQPALHYTGFEAFVDTRQLPEDVQIRVLQKDGEQLKVCAAVLAIRRARVAELP

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Crispr_ID: NZ_CP040431_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040431_3

822905-823004

Orphan

Consensus_repeat	Method
TCATCCACGCATGGCGTGGATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040431_3

>merge|NZ_CP040431|3|822905-823004|CRISPRCasFinder
TCATCCACGCATGGCGTGGATCTGCCTCATTGAAAGGCAAACAAAAAAAGCCCGGGTGTCTGCACACCCGGGCTTCTTCATCCACGCATGGCGTGGATCT

>NZ_CP040431|3|2|822905-823004|CRISPRCasFinder
TCATCCACGCATGGCGTGGATCT	GCCTCATTGAAAGGCAAACAAAAAAAGCCCGGGTGTCTGCACACCCGGGCTTCT
TCATCCACGCATGGCGTGGATCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040431.1\|WP_087802802.1\|831516_831933_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_154329246.1\|832011_834528_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225669
NZ_CP040431.1\|WP_154329244.1\|825485_826457_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381369
NZ_CP040431.1\|WP_111205211.1\|820706_821624_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176164
NZ_CP040431.1\|WP_012479176.1\|819022_820018_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP040431.1\|WP_154329241.1\|813084_813885_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|277343
NZ_CP040431.1\|WP_154329247.1\|835247_835892_+\|arylesterase	unknown	unknown	gnl\|CDD\|238860
NZ_CP040431.1\|WP_005408118.1\|829387_829987_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226243
NZ_CP040431.1\|WP_024957309.1\|834524_835172_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226647
NZ_CP040431.1\|WP_154329245.1\|826773_826968_+\|hemin-uptake-protein-HemP	unknown	unknown	gnl\|CDD\|378463
NZ_CP040431.1\|WP_043035376.1\|814024_815083_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP040431.1\|WP_005408115.1\|823993_825292_-\|nucleoside-transporter-NupC	unknown	unknown	gnl\|CDD\|224883
NZ_CP040431.1\|WP_005408103.1\|809837_811049_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP040431.1\|WP_044569529.1\|830060_830987_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_012479177.1\|820165_820597_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_154329240.1\|811372_813088_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|153248
NZ_CP040431.1\|WP_154329242.1\|816148_817999_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_049459457.1\|815141_816152_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NZ_CP040431.1\|WP_154329678.1\|827157_829383_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP040431.1\|WP_154329243.1\|818137_818965_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|181382

Protein	Function_ID	Function_description	E-value
NZ_CP040431.1\|WP_154329246.1\|832011_834528_-\|FtsX-like-permease-family-protein	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	1.61218e-176
NZ_CP040431.1\|WP_154329244.1\|825485_826457_+\|aldo/keto-reductase	gnl\|CDD\|381369	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR). Voltage-gated potassium channel subunit beta (KCAB) from Arabidopsis thaliana and Egeria densa are founding members of aldo-keto reductase family 6 member C1 (AKR6C1) and C2 (AKR6C2), respectively. KCAB, also called Shaker channel b-subunit, or K(+) channel subunit beta, or potassium voltage beta 1, or KV-beta1, or KAB1, is a probable accessory potassium channel protein which modulates the activity of the pore-forming alpha subunit.	0
NZ_CP040431.1\|WP_111205211.1\|820706_821624_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176164	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 6. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.69776e-83
NZ_CP040431.1\|WP_012479176.1\|819022_820018_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	2.53424e-147
NZ_CP040431.1\|WP_154329241.1\|813084_813885_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.14246e-69
NZ_CP040431.1\|WP_154329247.1\|835247_835892_+\|arylesterase	gnl\|CDD\|238860	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.	9.62102e-86
NZ_CP040431.1\|WP_005408118.1\|829387_829987_+\|hypothetical-protein	gnl\|CDD\|226243	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism].	0.00232894
NZ_CP040431.1\|WP_024957309.1\|834524_835172_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226647	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	3.89092e-97
NZ_CP040431.1\|WP_154329245.1\|826773_826968_+\|hemin-uptake-protein-HemP	gnl\|CDD\|378463	pfam10636, hemP, Hemin uptake protein hemP. This is a bacterial family of proteins that are involved in the uptake of the iron source hemin.	3.08264e-16
NZ_CP040431.1\|WP_043035376.1\|814024_815083_+\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	1.48414e-24
NZ_CP040431.1\|WP_005408115.1\|823993_825292_-\|nucleoside-transporter-NupC	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	9.89476e-142
NZ_CP040431.1\|WP_005408103.1\|809837_811049_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP040431.1\|WP_154329240.1\|811372_813088_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|153248	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.	6.95558e-58
NZ_CP040431.1\|WP_049459457.1\|815141_816152_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	4.39257e-44
NZ_CP040431.1\|WP_154329678.1\|827157_829383_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.2207e-124
NZ_CP040431.1\|WP_154329243.1\|818137_818965_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	2.98364e-27

>NZ_CP040431.1|WP_111205211.1|820706_821624_-|LysR-family-transcriptional-regulator
MLPTERLRGIEAFVATADAGSFTAAAERLHLTSSAVGKTIARLEARLGARLFERSTRRLRLTEAGEGFYRTCVRVLGELADAESVLVSHADAPVGRLRVDAPATFGRLKVWPLLLQLAAEFPQLHPQVTFSDRFSDLAEDGVDLAVRIGGPEPLPATLGSRLLGYECLRFCASPAYLLRHGQPRSAAELAGHDGVLFGRADGSIGPWQVADGRQRSTPLQARARLVVGGAEAQVAAVEAGFGIAQLATWLVDDALARGSLVSILPSLDCRGLPLRLLWPQGRQRLPRVDVALDRLGAGLQIDPPR
>NZ_CP040431.1|WP_012479177.1|820165_820597_-|hypothetical-protein
MDGFPWLLVAAAGSAIAALLHIGCIAFGAAWYRYFGAGQRMVRLAQAGHWWPPLMTAGITAVLVAWTLYALAAAGWHSPLPASRLVLSGIALLLLMRAAMGFGLALLRPGYNGRRFWVVSSVVCLSLGLAFALGTGQAWQSLR
>NZ_CP040431.1|WP_012479176.1|819022_820018_-|tRNA-dihydrouridine-synthase-DusB
MQIGPYTIAPNVVLAPMAGVTDKPFRLLCKRLGAGLAASEMTISDPRFWNTRKSIHRMDHDGEPAPISVQIAGTEPQQLAEAARYNVDHGAQIIDINMGCPAKKVCNAWAGSALMRDEQLVARILEAVVNAVDVPVTLKIRTGWDCDHRNGPLIARIAEDSGIAALAVHGRTRDQHYTGQAEYATIGEIKAALRIPVIANGDIDSPQKAAYVLKETGVDAVMIGRSAQGRPWIFREVAHYLATGEELPPPSLAEVRDILLGHLHALHAFYGEPQGVRIARKHLGWYAKDRPENAAFRAVVNRAEDPASQIALTTEYFDRLIAGEPALPSAA
>NZ_CP040431.1|WP_154329243.1|818137_818965_-|methyltransferase-domain-containing-protein
MTPPISSPTYLHGFSGTGQQRLMTQARLLESSIFGQIDYSGARRLLEVGSGVGAQTEILLRRFPELHVTGVDLSETQLATARENLARTPWCSDRYTLQQADAGELPFEARSFDAAFLCWVLEHVPSPARVLSEVRRVLAPGSPVYITEVMNASFLLDPYSPHIWRYWMAFNDFQYDHGGDPFVGAKLGNLLLAGGFRDVHTEIKTIHLDNREPARRKTMIAFWEQLLLSAADQLLQAGSVDEETVEGMRREFRLVQNDPNAVFFYSFVQGRATVY
>NZ_CP040431.1|WP_154329242.1|816148_817999_-|hypothetical-protein
MDLTCERMMSDSGRTPFSTHEVNLPGGLLPSQTRLLAGIIALLCILYVAFALTPSSYSLAYEYLGLAPQNPVLGSARMIRSDEWIVFTPYIQIAVNNDFGQFNAHSPYHESLRTFQALPLLDWGLLFKPYHWAFFVLPAANAYSFFFMFMAMAFLSGWALFLRQLRMPVPAAVLVSATLFFAPFVQVWWTSNAGAFALAPWAAAAWLCIGNRWVRILASAYALAVWVIAVSYPPFIISSLLAMAVLVLAFRRDALTLPRLIDAGIAGALALAVFIGYFHDIIPIVRNTVYPGQRQSAGGGVGLTSLFAHVFPNLMTYRFAPLPMFKGSNECEIAVLGSLLPLFTLVLADGARLREWVRGHRSSVLALAAGVLLIACWIFLPVPVLVGKLTGLSMVPPARALLAFGLLLNIGCAMILVRCGVRLERRRLLLLAALLMAGSVAKFLFGEGQFSRLHSAADALPYLCLIGLAVAARRPKLSAHAATLVLATAALANLLGNGLFNPVQPAGPIFAMDRAAVLHSLQARGSATTPEGALVAPGGFGALLPGVGIPAVNHVLYLPQMEYFRRYFPLMSDEAFNFTFNRYHHITVAPEGDAPRVLQGDLVELPAKPLLAHPAP
>NZ_CP040431.1|WP_049459457.1|815141_816152_-|glycosyltransferase-family-2-protein
MNPMTTTSPSASTPARIAVIIPCYKVTRHVLSVLAAIDDAVTAIYCVDDACPDGSGRLIQAEANDPRITVLFHQHNLGVGGAIKTGYRAAIADGMDILVKVDGDGQMDPALLMDFVAPIADGHADYTKGNRFWNLTHIRRMPPVRRLGNLLLSFMTKASSGYWQVFDPTNGYTAIHAKVASHLKLEAVSDRYFFETDMLFRLNTVRAVVQDVAMDAHYGDETSNLRIGRILGEFTFKHLRNTLKRIAYNYFLRDLSIASLELIAGSSLLAFGGLFGLYHWVRSAQADVATPVGTIMIAMVALISGLQFLLAFVGFDIANVPRQVLNRSIKLNRQPQ
>NZ_CP040431.1|WP_043035376.1|814024_815083_+|metal-dependent-hydrolase
MDSLTQIVLGGAVAAAIAPPGHRRAALLAGAALGTLPDLDALWLGLTATDPVASMIEHRSFSHSLLVLPWVAALIWWLFKRFGNGRVAQSPVRWFWAIQLALVTHPVLDAFTVYGTQLWWPLRPHPTMGSSVFIIDLGYTVWLLLGCVLAWFGRARPWAGKVLGVALLVSSGYLGWGLIAKAQVDRAAQQSLAAMGLGDAPRFSVPMPFNTLLWRVVAMTPNGYVVGDRSLVADHGPMQFEGHASNVQALREAGSIPAVQQLTWFNRGFMRAQVVDGRLVLSDLRMGLEPDYTFNFAVAEQVDGRWRPITPEQVRTDYSSPAARADAGRRLAAMWQRIWHEPAASGTGAAHP
>NZ_CP040431.1|WP_154329241.1|813084_813885_+|UDP-2,3-diacylglucosamine-diphosphatase
MSVLANLSPHRRAVFVSDVHLGSRHCHATELARFLSQLRCERLYLVGDIIDLWWMAHRRANWRQSHSEVIQALHALRRAGTEIIYIPGNHDASLRQVCGLMLPAMQVRRRAIHVTADGRRLLVAHGDDYDGVTHFGGLQEKFGDWLYYRILTGNQALNAVRRRLGMRYWSLSEFLKKRSGAAERYIERFVQAGLDDVRRRGLDGIVCGHIHRAALIERDGLVYANDGDWVESLTALAEDHDGALRLLDHNGQTLVELPGARLSQAA
>NZ_CP040431.1|WP_154329240.1|811372_813088_+|GNAT-family-N-acetyltransferase
MQELEQRLQQRFPDWFHGRRGQLARPLLRSVGRWSRLDQIEAFLQRSAGLRGFGFVAAGLEFIDGQYQVDPAALAKIPATGRLLIVANHPSGALDALALLDAVGRIRRDVRIVANDLLGAIAPLQDLLLPVRILGGKAQRGSLHAVEEALAAEQCVIVFPAGEVSRLSLRGIRDGRWQRGFVRFARAAGAPVLPVRVEARNSALFYGASTLFKPAGTALLAREMFTRRGRPLRLSIGEPMQLGKGGDPGAQLLAVRRALYALGRNGAAGDAAAVAGPEPLASPVPPSQVAVGIAAATQLGQTADGKQILLATCTADSPLLLELGRLRELTFRQVGEGTGRSRDLDDYDPQYEHIVIWDAAAQRIAGAYRIMRGAHALARHGLSGLYSASLFRYSDDAITHIAEGLELGRSFVVPDYWGSRSLDYLWQGIGAYLQCRPGIRYLFGAVSISAALPRDAREQLVAYYQRYYGGTAGLAESNRPFQYFAAPPSFGELDAGAAFDVLKANLAALGTGVPTLYRQYTDLCEPGGARFLAFGVDPDFSDSIDGLIEVDLCAIRPNKRKRYLRDAGMPA
>NZ_CP040431.1|WP_005408103.1|809837_811049_-|methionine-adenosyltransferase
MSSYLFTSESVSEGHPDKVADQISDAVLDAILTQDQRARVACETMVKTGVAIVAGEITTSAWIDLEALTRKVITDIGYDSSDVGFDGATCGVLNLIGKQSPHIAQGVDRKKPEEMGAGDQGLMFGYATNETDSYMPAAIHLSHRLVEQQAKIRKKKNSPLSWLRPDAKSQVTLRYENGVVSAIDAVVLSTQHAPGIKQKDLIEAVREEIIKPVLPAKWLHKGTKFHINPTGKFEIGGPVGDCGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKISDDKIEKLIRKHFDLRPYGIIKMLDLIHPMYQQTAAYGHFGRKPKEFSYLNGEGETVNATAFSWEKTDRAAALRADAKLK
>NZ_CP040431.1|WP_005408115.1|823993_825292_-|nucleoside-transporter-NupC
MVEGLGRIGFGLFGLAVLIGITWLFSNNKRAVDWKLVATGITLQIAFAALVILVPGGRDVFDALGHGFVKVLSFVNEGSGFIFGSLMDTKNYGFIFAFQVLPTIIFFSALMGVMYHLNIMQAIVRVMAWAITKVMRVSGAETTSVCASVFIGQTEAPLTVRPYIARMTQSELLTMMIGGMAHIAGGVLAAYVGMLGGGDPAQQAFYAKHLLAASIMAAPATLVVAKLLIPETGTPLTRGTVKMEVEKTSSNIIDAAAAGAGDGLKLALNIGAMLLAFIALIALLNAPLTWIGEVTGLAAQIGKPTNLSTIFGYLLAPIAWVIGTPWADATTVGSLIGQKVVINEFVAYTELSQIVNGQVAGVSLSSEGRLIATYALCGFANFSSIAIQIGGIGGLAPERRHDLAKFGLRAVLGGTIATFMTATIAGVLTHFS
>NZ_CP040431.1|WP_154329244.1|825485_826457_+|aldo/keto-reductase
MQYRRLGSTGLPISALSFGAWVTFGDQIPRDEARNLVAAAWDHGVNFFDNAEGYANGRAEQVMGDVIADLRLPRDGFCVSSKVFFGSAKDPRPTQRGLSRKHVTDACHAALKRLRVDYLDLYYCHRPDPDAPIAETVHAMDTLVRQGKILYWGTSEWSAVQIQQALDIAEALNLQGPSMEQPQYNLLHRERVEVEYAPLYAGAGLGTTIFSPLASGLLTGKYDQGIPADARLGREGMEWLQNLVLGADAGARLGQVRRFSEVARALGHAPATLAIAWCLRNPNVSSVILGASRVSQLLQNLQALEVLEQVDAAGWAEVEAVFA
>NZ_CP040431.1|WP_154329245.1|826773_826968_+|hemin-uptake-protein-HemP
MNAQPVLLRPETLTLRDRPVRVVPPEEGIDSEALLKGRREILIQHGDRFYRLRHTSNDKLILTK
>NZ_CP040431.1|WP_154329678.1|827157_829383_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MALPLSAHAAATAATAATAAPDAREFDRVQVTATRTERAVSDVAATVDVIDREQMDRHLVQDIKDLVRYEPGLSVTRSATRFGLDGFRIRGLDGNRVRIQTDGIVMPTRFDIGSFASSNRNFTDLDTLKRVEIVRGPASSLYGSDALGGVVAFVTKDPADYLKDGKNSYFGLKFGYDGEWKGLLGGATAAFGGDHWSGLVNVNHHQGQETDNKGTVRSDNDTRTASNPQDRDGRSLLSKLVYAPSEDQRFRLTVEGNEDTTDTNVLSAIASVAPRPGAMAAATGMKSHDTQKRNRVSFAHEMDALDQPFADSLHWQVYAQNSETRQQTDETRTDGTRRHRVFSFDQHAYGLQAQFNKAFATGSVEHALTYGFEGTRTEIRQKRDGYQVSKAGVVSNTVLPDTFPVRDFPISKTTELGLYAQDEMRFADGRLSLVPGVRVDRYELKPEVDSIFAEDNPTTAVAQLKKTSVSPKLGMVWRFTDEWSLFAGYARGFRSPPYNDVNIGLTNVAFRYTAIANPDLKPETSDGYELGLRFIAPAAYVSVSGYYNDYKDFIQSNVDTGRNAQGLTVFQSQNIADARIYGAEMKAGIEFGELSPALKGWALRSALAWSRGDNRTDDEPLASVDPLRGTLGLMYDTDTWGVELAGTFVQRKKRLPPPAAQTNPNAPAPFVYQPAGYGVLDLMAHWNFAPGATFNVGVFNLADKRYIEWSSITPSLITDRALSDRFSSPGRTFSASLAVSW
>NZ_CP040431.1|WP_005408118.1|829387_829987_+|hypothetical-protein
MSRALSARRNDSIAAPNSAAWPTPAQLATLGTVLCLYHADGNELGGWRQAVRVHACQGVDSEGLRESLCFLDGRGRCVWRLYLLPDSDFLAWDRLVAALPPGPEHDSEASVGERLWRRLAGHLGGQRWRLCALRLHAADDGRTLAASLSTLSSLGAATARRIARLEGAEGELAIDDCCCADAARRPAPQIPGDLPLIRL
>NZ_CP040431.1|WP_044569529.1|830060_830987_+|hypothetical-protein
MKLQTASAMLLLAASGVASAQPSDIARDHDSILAMQGEYTVDFAFDETVLLKPGYERAPAMRSGGSEVVIVVENTPKRIVLQHLLLDEKSGHITKHWRQDWVYEAPNRFEFSADQTWKVRSIPSAVNQGAWTQCVYEVSDAPRYCGTGTWTYTNNVPSWTSDLSWRPLPRREYTKRSDYNALAVVNRHTLTPNGWTHEQFNTKVQRNADGSQVEIAREFGFNDYVKTTEVDFTPARNYWKATAGYWAKVRQRWDGFLTQAPGVHLKTRIDGMAMIIPLFTQAEEIQSGKKVKDKQIDEVFAKYVEKAQ
>NZ_CP040431.1|WP_087802802.1|831516_831933_+|hypothetical-protein
MLMVVPERQMFDTYLSDPQVYDRLEQHIHDHFMTGINAASLRIEDFRSPHYNTFFVDGTKDRDANPIFSAKHLPSGNIVRIVIFDSPPEYSEVRKRVGDNEEKDELCLFITLLGVQRAMSTTVAWAQQQASIIPATRQ
>NZ_CP040431.1|WP_154329246.1|832011_834528_-|FtsX-like-permease-family-protein
MNLLRHAWRALRREALAGDLLTVFAALVLGVAVMTAVGTLVNRVNLALTGSAAEMLGGDLGIAGRDDPPQAFADEAQRRGLAFTRIASFGSVLFNGDASQMASIKAVQAGYPLRGTLRVRATPGGALVAEAGMPPKGQAYADPRLLQGLGLKAGDDLEFGAGTLRIAGIIETEPDAGGDLLTLSPTLLVNRADVEGTGLLGPGSRINYRLMFAGSADQVAALRQWLLPQVKGLRLLSVDDTQRGVRQAFDLAGRFLGLSALLAVLLAGVATALAANRFALRRIDQVAILRCLGARQRDILLGLALQLLMLALPACALGIGLGMAAQEGLVQVLGSLVPQRLPLPEAMPALTGAGIGLLLLFGFGLPPLLRLRGVPPMRVLNRSFAALPPASLLAYVAALAASLLLAVQVTGDLKLALWVLGGLAALAVAAGVVGFVLLQLLRGLQHRLHGHWRLGLAALTRRRMLAVMQLVGLSLSLCALLLLAVTGPGLLQQWRERLPADTPNYFLINIQPEQRDSVLGALRGLGANDASIEPMATGRLIAINGKPPLRVDRSPDQSGQPASGEAQRDDDDENRPLNFSWRSGFPPANTLMNGTFWTPDSTAAEASVEIGWAKRYGVYPGDRITIAVGEQEREFTVTSVRKADWNTFRPNFFVLLNPNAVGDTPHNLLSAFHLSAGKAAGLGELIRAQPNLSLLDVDAVISQVRDVMERVAQAVQLVMVFSLLAGVLVLLAALQATAGERRYDSAVLRTLGATRRQLRGAVLVEFGALGTLAALLAVGAAAAIGVAVSQKVFELPLLPPWPGLLIGGVVGIGLSLLAGWWGTRAILHTPPALALREA
>NZ_CP040431.1|WP_024957309.1|834524_835172_-|ATP-binding-cassette-domain-containing-protein
MQGPEGEVHILDNITLTVHEGTSVAIVGASGSGKTTLLGLLAGLDLPSRGRIALAGQDLSALDEEARAQLRAREVGFVFQSFHLLPALTAAENVALPLELAGREDRARVDEVLAQVGLAHRARHYPRQLSGGEQQRVALARAFVTRPRILFADEPTGSLDHATGQHISDLLFELNAGSGTTLVLVTHDLRLAQRCQYIHRIDNGRLLPVERGAQA
>NZ_CP040431.1|WP_154329247.1|835247_835892_+|arylesterase
MRKTGWSRRAGAVMVLLLGFLLLPGLACAKGPAGTVLVLGDSLSAAHNIPADAGWVSLLQQRVRQQSKTPARIVNASMSGETTAGALTRLPALLAKEKPTVVVIALGGNDALRGLTPAQVQGNLGKMVQASQKAGAKVLLLGIDVPPNYGPAYRQRLAAAYKALATRYKVPLLPFLLEGVALQPGMMQADGLHPTAQAQPKVLDNVWPLLRPLL

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Crispr_ID: NZ_CP040431_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040431_4

2258511-2258617

Orphan

Consensus_repeat	Method
ATCCACGCATGGCGTGGATCTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040431_4

>merge|NZ_CP040431|4|2258511-2258617|CRISPRCasFinder
ATCCACGCATGGCGTGGATCTACCGCAACCCGCTTTGGTGGGGGCCGACCGTTGGTCGGCACGGATGCCTGTGCCTCTCGATCATCCACGCATGGCGTGGATCTACC

>NZ_CP040431|4|3|2258511-2258617|CRISPRCasFinder
ATCCACGCATGGCGTGGATCTACC	GCAACCCGCTTTGGTGGGGGCCGACCGTTGGTCGGCACGGATGCCTGTGCCTCTCGATC
ATCCACGCATGGCGTGGATCTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040431.1\|WP_005409584.1\|2255710_2258470_+\|phosphodiesterase	unknown	unknown	gnl\|CDD\|236645
NZ_CP040431.1\|WP_154329413.1\|2267499_2267883_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_005409576.1\|2246335_2246731_-\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|183628
NZ_CP040431.1\|WP_005413279.1\|2260924_2261539_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|234690
NZ_CP040431.1\|WP_005409575.1\|2245924_2246332_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|183634
NZ_CP040431.1\|WP_005409582.1\|2251699_2253472_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP040431.1\|WP_005409594.1\|2265135_2267421_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP040431.1\|WP_032966708.1\|2259256_2259472_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_005413280.1\|2261535_2262678_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP040431.1\|WP_088428725.1\|2253476_2255579_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP040431.1\|WP_005409581.1\|2249542_2250760_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340419
NZ_CP040431.1\|WP_005409592.1\|2263720_2264047_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP040431.1\|WP_099473118.1\|2248078_2248735_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|183625
NZ_CP040431.1\|WP_005409591.1\|2263137_2263608_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_005409590.1\|2262674_2263136_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239647
NZ_CP040431.1\|WP_154329412.1\|2246868_2247813_-\|response-regulator	unknown	unknown	gnl\|CDD\|381151
NZ_CP040431.1\|WP_005409587.1\|2259570_2260761_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP040431.1\|WP_005409580.1\|2249112_2249451_+\|flagellar-protein-FlgN	unknown	unknown	unknown
NZ_CP040431.1\|WP_005409579.1\|2248810_2249116_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NZ_CP040431.1\|WP_111189495.1\|2264184_2264997_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	unknown	unknown	gnl\|CDD\|226100

Protein	Function_ID	Function_description	E-value
NZ_CP040431.1\|WP_005409584.1\|2255710_2258470_+\|phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.38647e-105
NZ_CP040431.1\|WP_005409576.1\|2246335_2246731_-\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|183628	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional.	8.61259e-79
NZ_CP040431.1\|WP_005413279.1\|2260924_2261539_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|234690	PRK00218, PRK00218, lysogenization regulator HflD.	2.48163e-86
NZ_CP040431.1\|WP_005409575.1\|2245924_2246332_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|183634	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional.	1.2905e-80
NZ_CP040431.1\|WP_005409582.1\|2251699_2253472_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	5.55568e-97
NZ_CP040431.1\|WP_005409594.1\|2265135_2267421_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP040431.1\|WP_005413280.1\|2261535_2262678_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP040431.1\|WP_088428725.1\|2253476_2255579_-\|PAS-domain-S-box-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	5.59366e-43
NZ_CP040431.1\|WP_005409581.1\|2249542_2250760_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|340419	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS. This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli AtoS, an HK of the AtoS-AtoC TCS. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have accessory domains such as HAMP or PAS sensor domains or CBS-pair domains.	1.6216e-52
NZ_CP040431.1\|WP_005409592.1\|2263720_2264047_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	4.26539e-44
NZ_CP040431.1\|WP_099473118.1\|2248078_2248735_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|183625	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA.	3.44511e-107
NZ_CP040431.1\|WP_005409590.1\|2262674_2263136_-\|NUDIX-hydrolase	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.7154e-70
NZ_CP040431.1\|WP_154329412.1\|2246868_2247813_-\|response-regulator	gnl\|CDD\|381151	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins. This subfamily includes the REC domains of Bacillus subtilis chemotaxis protein CheV, Myxococcus xanthus gliding motility regulatory protein FrzE, and similar proteins. CheV is a hybrid protein with an N-terminal CheW-like domain and a C-terminal CheY-like REC domain. The CheV pathway is one of three systems employed by B. subtilis for sensory adaptation that contribute to chemotaxis. It is involved in the transmission of sensory signals from chemoreceptors to flagellar motors. Together with CheW, it is involved in the coupling of methyl-accepting chemoreceptors to the central two-component histidine kinase CheA. FrzE is a hybrid sensor histidine kinase/response regulator that is part of the Frz pathway that controls cell reversal frequency to support directional motility during swarming and fruiting body formation. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.287e-37
NZ_CP040431.1\|WP_005409587.1\|2259570_2260761_-\|chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	7.72638e-31
NZ_CP040431.1\|WP_005409579.1\|2248810_2249116_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	1.67856e-14
NZ_CP040431.1\|WP_111189495.1\|2264184_2264997_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	gnl\|CDD\|226100	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms].	2.35157e-74

>NZ_CP040431.1|WP_005409584.1|2255710_2258470_+|phosphodiesterase
MDQGIIASLLQHPLASALVIVDRTGRPLAANPAAREHGLPATVAAYAPMLEDLRLMAADGGIVACTLPGGPHGHYDGHLRAVHDGAGNLLAFTLSIPEPVPLGGGGRWELALDSAGHSLWDWDIPSDRVVRTPAVGDETATEMLARVHGEDIAQVRAALEEHLRGLSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQLEGLLQEQQLHLSEAQRIASMGSWSFDPNSGHFWWSPELRSMLALEQGAVPGQRRWLKQLHPRSRGALRAAWRRLWRDGRAANLELELTRGNEPSQHLRLWMQPLLDMDGQPKRLLGQVQNITEQHQTDALIRWRTELLNRVSALGRIGGCEIEVKTRHMQWTEECYRIHGLRKEPITLDQALALYTEDSRNAFEAALARIANGGLPEQLDLCFYRQSGLRVWVQVLIELDRRDGLPPRFVVLFRDITREREANERIELLAHYDLLTGLPNRVLLGEQTAEAIEEARDRGTSLAMLFIDLDGFKTINDSFGHATGDALLKAAATRLHQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLIASLAEPLRRGETTLKVGASVGIAMLGDAQTDFDSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRKLELEHALHGAIEREEFSLAYQPLLHAHHGEPPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLNEACRQATAWDRAGLRFDRIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESALIRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGTAEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQPQPVSLRTDASGEVMLVR
>NZ_CP040431.1|WP_088428725.1|2253476_2255579_-|PAS-domain-S-box-protein
MPAEPTGTALVPDPRMAQALSRDRRRVVLSYLVMALAWMIASDSAVQALVPDPQQAAMWQSVKGSFFALASAGLLYLLLRPLAEHVLHTHARQQASELRLRQMFEGNPGPILVYDLDTLAILDANPAACIAFGWERDELLEQTIDALWPPGQDQALQTKLEAIREAPEELCILRTQLQLRDGSLRQMELRSNAISYDGHNARLLIAIDRTAEDLAQLRRDQALARVEEAHELARIGAWELDPSTGMGRYSNQVYRLLGRRPPEARRWHRFDELLVPADPATATQTEQLLADLCSGDPVQVDVLLPLLSMDGRALMVHLRAASGVDESGRSRVLGTLQDVTEREQSRRLLREREEQFRELVRVLPDGVVILSDEHVLYTNAWAASLFGYGSHTLLGEPLSALVAAGDLARVRGQLRAGQPHLGPGHSSVVAMQRADGRSFHAGLAVGEVRYGGRDCKLLIVRDLSDSERTRSALETSNRELQAMAGRLFSLQEDERRAISRDLHDDIGQAITAIKLSAHAAQDEHDPQRRAEDLAQIVSLADTTVAKLRDISTLLRPPQLDALGLEAALSWQARVLFRSSQVELLAEIEPLPHRPDNSIEQACFRIAQESLTNVLRHARASQVHLQLRDIGKRSLHLQIRDDGEGFDPDGPRGLGLIVMRERAQSVGGHVRIESAHGEGTLIDVHLPYQAASMAAVESPEY
>NZ_CP040431.1|WP_005409582.1|2251699_2253472_-|EAL-domain-containing-protein
MWNPNQPPVSIDDAPDRLGAGNPELQAMVAEAASGGTALMLMHVDIDHFASVNENMSAEVGDQALVLVAQRLQSYLRGRGKLWRHGSDEFLIAVPRNADVPLPEDFAEEIRQQMELPLSVLPYTLFMTGKLGVSLCPEHASNASRLLDHAEDALYQAAREGGNAVRIHAVDTPPSAHSESIIARQIVDAIPNGELKLRYQPLVSARDGHVVGMEALLRWQSPTLGMLVPERFMRTAERLGIIVQIGTWVLEGALKQARLWRDQGFDDFTIAVNVSTLQLLRPNFFAEVMGLIQAAGVPAQMLTLEINESALTNNVNFVHETLANLRNEGISLSLDNFGTGDSSLSALVRYPVDKLKIDRSFIKSAPAGNREAAIARAIIAMGHQLGMTVIANGVESQAQLGFLRRNDCDVFQGYLFGEPMSADAAGMTLRRRYLRPEAFAETRPDRTLLLLDDEENVLRSLVRLFRRDGYRILAAGNVRDAFDLLAINDVQVILSDQRMSDMSGTEFLGRVKMLYPDTIRLVLSGYTDLNTVTDAINRGAIYRFLTKPWNDDELRKHIHQAFRTYEEQRRSNAGPAPAESGDGGEDRPLR
>NZ_CP040431.1|WP_005409581.1|2249542_2250760_+|two-component-sensor-histidine-kinase
MSAANALVTAPLPPQPVLQALLERLREGLLLFTEDGQVALANPAAQNLLAGGEDGALPPQRLRELLPPDALEQARQHGHWNGSLPLGEGVVIAHLYHHGPVGQGHFLALFRHIEGQEDYERELQQRHAELRQAYLRLNGTQEKLLQSEKMASIGQLAAGVAHEINNPIGYVHSNLGSLQEYLRSLFTVIEAYERALRAPDPKALIPEIDDIRDRLDIDFISRDLPQLMAESREGIERVTRIVRDLKDFSYSGRDESWKLVDLHAGLESTINIIWNELKYKVTLVREFGQLPLVECLPSELNQVYMNLLLNAGHAIAERGTITVRTGVDGDQVWVEFEDTGGGISPELRQRIFDPFFTTKPVGSGTGLGLSISYSIINKHHGRIDLDSTPGVGSRFRVVLPVKQPR
>NZ_CP040431.1|WP_005409580.1|2249112_2249451_+|flagellar-protein-FlgN
MTAAMSEPLQRLAQALDVERQALVEHDVHALIRATGAKLEALRALEGAPPVGQGEQLQELAERNRANGVLLSRRRREVNWALRQLGRTEDASAYDAKGQSHTVTARRPLAVA
>NZ_CP040431.1|WP_005409579.1|2248810_2249116_+|flagellar-biosynthesis-anti-sigma-factor-FlgM
MSQKIDGNLQVPQALRSVTTPANKPGVSTDAAARPVEAADSLRLTGEATNLQAIERELTTAPAIDAQRVAAVRESLQNGTYKINPDAIASRMLDLDQQLHG
>NZ_CP040431.1|WP_099473118.1|2248078_2248735_+|flagellar-basal-body-P-ring-formation-protein-FlgA
MRRVTSLLAIALALASPWAAAADWQPVASIRTAALSTLPAGSEGEAQVADALRLPKCGGALQVQPTANTTVEVSCPDAGGWRLFVPVKVRRNQTVLVLNRGIGTGETLTAADITTAQRDAARIAGAVLADPNAAIGRIARRPLQAGALLSNNDLVVQRLIKRGDNVALVSRRGSVEVRIAGRAMGDAGENERVSVENLSSRRIVQGTVDAAGDVIVAR
>NZ_CP040431.1|WP_154329412.1|2246868_2247813_-|response-regulator
MSHDLLNRIDQRTRLAGHNRLALLLFRLGGRQLFGVNVFKVQEVLRRPELFQVPGLPSQFSGVADVRGRSVPVLDLGLAIGHPEREPEADTSPGYLVVTEFNRSIQGFLVSGVERIVNIAVEDIHPPPELGAESSYLTAVTRFQGELIQVIDVESVLADIAQVRGEAVLDPAMAMPSDSPQLQVLVVDDSRVARQQIRSVLDQLGVGATLLSDGKQALDHLLQIHASGENPAERYAMVISDIEMPAMDGYTLTTEIRRHPGLAGLYVLLHTSLSGVFNNAMVERVGANAFVAKYSPHELADFVLDRLRKVALAA
>NZ_CP040431.1|WP_005409576.1|2246335_2246731_-|flagellar-basal-body-rod-protein-FlgB
MRNLITDYLGVHAQAMPLREQRMKLIASNLGNADTPGYKAQDLDFDAALRHAQGQDANGLMATTHEQHYEISSGLNPFQIAREGVQPSLDGNTVDPDAERAAYGRAALEYRASLSFVESKVRSMLTAITGQ
>NZ_CP040431.1|WP_005409575.1|2245924_2246332_-|flagellar-basal-body-rod-protein-FlgC
MSNLPIFDIAGSALQAQSVRMSTIASNLSNADTVAGSADAVYKPLEPIFQAVTSKNDPNITSVKVKEITQSDAAPIKRYEPGHPLADGDGYIYQPDVDPVAQMVNLISTSRNYQAGVEMLTTAKELALATLTMGR
>NZ_CP040431.1|WP_032966708.1|2259256_2259472_-|hypothetical-protein
MTLIRALPSLTDTERPRNASVREQLQQLEDVAREEIRELQQLADARPAPSRADEALLGLAWDLGLDGEALK
>NZ_CP040431.1|WP_005409587.1|2259570_2260761_-|chemotaxis-protein
MYSRIFIRLAAPLALTLLLPFAIGFEWPAALRWAILTTMTLSWLGFAWWTTRAQAHRSPEHARVLREQDQLLTELRNFVGNEIEGSRGEVERARDLIRQAVSSLGGSFDAMNRKSRQQSQALSRIVDRAGDEGNAGLDVARFAQHASHRMEQLVEALEQVSGQSSTTVQHIDQMAQHLDGIFALLEDVKSIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLSERSTTFNEQIRKLAHSSKDAIAKVRETVSHMASRDMDRSREARQEAAAMLDNVAQINASLGDGMREVSECARSIDGSVAEAVRALQFEDIATQALGGVHTHLDRLTAINREAVALQELLHRNGGVFDEEIATALQRTGSRLRELRSEWERPPHKPVAQQSMGAGTVELF
>NZ_CP040431.1|WP_005413279.1|2260924_2261539_-|high-frequency-lysogenization-protein-HflD
MSFTVDDRVLALAGIAQALQQVRRIADTGHSDAAAVRTAVDSVFRVDASSPQEVFGDRHALKSGLRLLHNYFRSQGQDPILPKLALSVLQLERRFVQDGATVNKVASGIERAQRQATELGDSGHPDVLANLGGLYADTISHLKPRVMVQGNPHYLGQAGVVAEIRALLLAAVRAAVLWRQLGGSYWDFLFSRKAMIEAVDRQLA
>NZ_CP040431.1|WP_005413280.1|2261535_2262678_-|tRNA-2-thiouridine(34)-synthase-MnmA
MSTPRVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWADDGSGDCRAEDDRRDAVAVCGLLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERIATGHYARVTQRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKTDLRRIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPARPGQILDPADGSVIAEHPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSETAHWIAGSPPARRFECTAQTRYRQPDEPCTVQVLDDGSVLVTFARPQRAVTPGQSLVLYDGDVCLGGAVIAATDAPLEQRLRTTPSPFEVIAA
>NZ_CP040431.1|WP_005409590.1|2262674_2263136_-|NUDIX-hydrolase
MNATPDPRWAPHATVATVVVDGGRVLLVEETIDGRQVLNQPAGHLEPGESLAEAALRETREETGWTVQLTHFIGCYQWTAGDGTAFLRFCYAARPVSHDPAQPLDTGIDRALWLTPAELQAAGERQRSPLVWQVVADYLGGQRHPLSLVREVA
>NZ_CP040431.1|WP_005409591.1|2263137_2263608_-|hypothetical-protein
MKRTLLPALLIALAATGSAAAADADKAVARHLDKLGYTYEVDEDGDYRMVFDVEGDRTQMVYVRSSVEDFGTHNIREIWSPAYNAKTKQFPVAVANRLLEDSQDAKMGGWVKQDTTAMFVVKIDADATADQLSDAIDAAIRTADAMELELTKKDEF
>NZ_CP040431.1|WP_005409592.1|2263720_2264047_+|ATP-dependent-Clp-protease-adapter-ClpS
MPHESSPDSQHEHGVAVEAARPEVAPPPFYQVMLLNDDYTPMDFVVDVLQQFFSMDLDKATQVMLHVHTRGRGVCGVFTREVAETKVAQVNEYSRMNQHPLLCTMEKA
>NZ_CP040431.1|WP_111189495.1|2264184_2264997_-|APH(6)-family-putative-aminoglycoside-O-phosphotransferase
MSEPYLSRWRLRRDGPALRTPHARLWPVLTAAGEPAMLKISSETEEQNSHRLLRWWNGDGAARLLAHEGPAILIERARGDSLRQRSIEGDDDACTAILCQVLQRLHRPRSAPPAKLVCLRTWFADLLQPRAVLPPLLEQCRSLAEGLLRDEQEIRPLHGDLHHDNVLDFGPRGWLAIDPKRLLGDRAFDYTTMFSNPDLCGPGIHVATRPERFAIRLEQVCALAELERTRLLRWIAASTALSAVWFRDDGDPADIDETVARMALEALAER
>NZ_CP040431.1|WP_005409594.1|2265135_2267421_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MFSKDLEHTIGQCYKRAREARHEFMTVEHLLLALLDNPSAQAVLKACGADADRLRQELEQAIEASVSRLAEDDGRDTQPTLGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYYLNQQDVTRLDVVNYLSHGIAKLGDEGEQSSSSPEGESRMEGGEGEPKGDALTEFASNLNDQARAGRIDPLVGRADEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLARRIIEGSVPDVLADAVIYSLDLGALVAGTKYRGDFEKRLKSVLTALKKVPNAVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCIGSTTFQEYRGIFEKDRALARRFQKIDIVEPTVGETYEILQGLKSKYELHHGVTYSDEALQAAVDLSVKHIGDRLLPDKAIDVIDEAGARQRLLPEEQRKELIDVEEVEAIVAKMARIPAKQVSATDKDVLQHLERNLKMVIFGQDPAIETLSSAIKLARSGLGNPEKPIGNFLFAGPTGVGKTEVTKQLALQLGIELVRFDMSEYMEPHSISRLIGAPPGYVGFDQGGLLTEKIVKTPHCVLLLDEIEKAHPDIFNILLQVMDRGVLTDTNGREANFKNVVLVMTTNAGAAQASRRSIGFTKQDHATDAMETIRRSFTPEFRNRLDAVVQFQALGFEHILRVVDKFLIELEMLLQDKHVSLSATPTARDWLAHHGFDPLMGARPMARVIQDKIKRPLADELLFGKLVNGGKVSIDVRDDELVVETQAEPERLLPVTVE
>NZ_CP040431.1|WP_154329413.1|2267499_2267883_-|hypothetical-protein
MNALLPHVLLPAVLLVSLPLAAFATEPSKPSNASECIALVANRDIRPSSTEREVLLRDGDNHYRVHLQKRCLGAAASASYVFFTPSTPERVCGDARSTLKTDSNHCTVTRIEPIDAATFRRLAQQGR

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Crispr_ID: NZ_CP040431_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040431_5

2569799-2570038

Orphan

Consensus_repeat	Method
CTGAGGCTGGCCCAGCCATCCACGCATGGCGTGGATCTACTGCCGAGCGGCTTCTACTGCCCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040431_5

>merge|NZ_CP040431|5|2569799-2570038|PILER-CR
CATCCACGCATGGCGTGGATCTACTGCCGAGCGGCTTCTACTGCCGGGCCTGCCCTGGTGGGTGCCGACCGTTGGTCGGCACTGAGGCTGGCCCAGCCATCCACGCATGGCGTGGATCTACTGCCGAGCGGCTTCTACTGCCCGGCCTGCCCTGGTGGGTGCCGACCGTTGTCGGCACTGAGGCTGGCCCAGCCATCCACGCATGGCGTGCATCTACTGCCGAGCGGCTTCTACTGCCCG

>NZ_CP040431|5|2|2569799-2570038|PILER-CR
CATCCACGCATGGCGTGGATCTACTGCCGAGCGGCTTCTACTGCCGGGCCTGCCCTGGTGGGT	GCCGACCGTTGGTCGGCACTGAGGCTGGCCCAGCCA
TCCACGCATGGCGTGGATCTACTGCCGAGCGGCTTCTACTGCCCGGCCTGCCCTGGTGGGTGC	CGACCGTTGTCGGCACTGAGGCTGGCCCAGCCA
TCCACGCATGGCGTGCATCTACTGCCGAGCGGCTTCTACTGCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040431.1\|WP_099498087.1\|2587200_2589582_-\|type-II-secretion-system-secretin-GspD	unknown	unknown	gnl\|CDD\|274175
NZ_CP040431.1\|WP_024956497.1\|2568363_2568810_+\|type-II-secretion-system-minor-pseudopilin-GspH	unknown	unknown	gnl\|CDD\|130769
NZ_CP040431.1\|WP_005413642.1\|2582921_2584097_-\|phosphate-binding-DING-protein	unknown	unknown	gnl\|CDD\|270283
NZ_CP040431.1\|WP_043033319.1\|2563691_2565476_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|227622
NZ_CP040431.1\|WP_154329467.1\|2590102_2591266_-\|general-secretion-pathway-protein-GspL	unknown	unknown	gnl\|CDD\|273768
NZ_CP040431.1\|WP_032966855.1\|2591262_2592168_-\|type-II-secretion-system-minor-pseudopilin-GspK	unknown	unknown	gnl\|CDD\|377165
NZ_CP040431.1\|WP_154329465.1\|2569165_2569780_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227132
NZ_CP040431.1\|WP_012480440.1\|2568806_2569169_+\|type-II-secretion-system-minor-pseudopilin-GspI	unknown	unknown	gnl\|CDD\|273767
NZ_CP040431.1\|WP_043033313.1\|2584563_2585763_-\|type-II-secretion-system-inner-membrane-protein-GspF	unknown	unknown	gnl\|CDD\|273980
NZ_CP040431.1\|WP_043033308.1\|2592177_2592615_-\|type-II-secretion-system-major-pseudopilin-GspG	unknown	unknown	gnl\|CDD\|130771
NZ_CP040431.1\|WP_005409874.1\|2563267_2563681_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP040431.1\|WP_005409873.1\|2562562_2563228_-\|TonB-family-protein	unknown	unknown	gnl\|CDD\|223880
NZ_CP040431.1\|WP_005409887.1\|2589578_2590106_-\|general-secretion-pathway-protein-GspM	unknown	unknown	gnl\|CDD\|377391
NZ_CP040431.1\|WP_043033593.1\|2567798_2568248_-\|general-secretion-pathway-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_043033320.1\|2560774_2562520_-\|membrane-protein	unknown	unknown	gnl\|CDD\|374891
NZ_CP040431.1\|WP_024956499.1\|2567332_2567668_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_154329464.1\|2565514_2567131_-\|BamA/TamA-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP040431.1\|WP_111173942.1\|2570338_2582722_-\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372178
NZ_CP040431.1\|WP_043033307.1\|2592672_2593257_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_154329466.1\|2585770_2587204_-\|type-II-secretion-system-protein-GspE	unknown	unknown	gnl\|CDD\|131585

Protein	Function_ID	Function_description	E-value
NZ_CP040431.1\|WP_099498087.1\|2587200_2589582_-\|type-II-secretion-system-secretin-GspD	gnl\|CDD\|274175	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP040431.1\|WP_024956497.1\|2568363_2568810_+\|type-II-secretion-system-minor-pseudopilin-GspH	gnl\|CDD\|130769	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	8.82779e-20
NZ_CP040431.1\|WP_005413642.1\|2582921_2584097_-\|phosphate-binding-DING-protein	gnl\|CDD\|270283	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily. This subfamily contians phosphate binding domain found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.53887e-26
NZ_CP040431.1\|WP_043033319.1\|2563691_2565476_-\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|227622	COG5306, COG5306, Uncharacterized conserved protein [Function unknown].	2.50469e-41
NZ_CP040431.1\|WP_154329467.1\|2590102_2591266_-\|general-secretion-pathway-protein-GspL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	3.8907e-20
NZ_CP040431.1\|WP_032966855.1\|2591262_2592168_-\|type-II-secretion-system-minor-pseudopilin-GspK	gnl\|CDD\|377165	pfam03934, T2SSK, Type II secretion system (T2SS), protein K. Members of this family are involved in the Type II protein secretion system. The T2SK family includes proteins such as ExeK, PulK, OutX and XcpX.	1.27443e-32
NZ_CP040431.1\|WP_154329465.1\|2569165_2569780_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227132	COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion].	6.37671e-15
NZ_CP040431.1\|WP_012480440.1\|2568806_2569169_+\|type-II-secretion-system-minor-pseudopilin-GspI	gnl\|CDD\|273767	TIGR01707, Type_II_secretion_system_protein_I, type II secretion system protein I. This model represents GspI, one of two proteins highly conserved at their N-termini and described by pfam02501 but easily separable phylogenetically. The other is GspJ. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.	2.55043e-16
NZ_CP040431.1\|WP_043033313.1\|2584563_2585763_-\|type-II-secretion-system-inner-membrane-protein-GspF	gnl\|CDD\|273980	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher. [Protein fate, Protein and peptide secretion and trafficking].	5.3888e-161
NZ_CP040431.1\|WP_005409874.1\|2563267_2563681_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	8.7853e-35
NZ_CP040431.1\|WP_005409873.1\|2562562_2563228_-\|TonB-family-protein	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	2.00552e-08
NZ_CP040431.1\|WP_005409887.1\|2589578_2590106_-\|general-secretion-pathway-protein-GspM	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	4.60354e-13
NZ_CP040431.1\|WP_043033308.1\|2592177_2592615_-\|type-II-secretion-system-major-pseudopilin-GspG	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	5.09832e-57
NZ_CP040431.1\|WP_043033320.1\|2560774_2562520_-\|membrane-protein	gnl\|CDD\|374891	pfam16930, Porin_5, Putative porin.	0
NZ_CP040431.1\|WP_154329464.1\|2565514_2567131_-\|BamA/TamA-family-outer-membrane-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	3.92352e-77
NZ_CP040431.1\|WP_111173942.1\|2570338_2582722_-\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|372178	pfam12545, DUF3739, Filamentous haemagglutinin family outer membrane protein. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam05860.	3.78593e-44
NZ_CP040431.1\|WP_154329466.1\|2585770_2587204_-\|type-II-secretion-system-protein-GspE	gnl\|CDD\|131585	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0

>NZ_CP040431.1|WP_154329465.1|2569165_2569780_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MKRTAAGFTLIEVMIAITIMGVLALICWRALDSVASSDQRLRRADAETTTALRVLQQFQRDIEMRADDALMNGAVRPADQPQRLLPPSLVSERHPDGSFALEITRSLGSDGLRWQRVRWWRQGSTLWRASGAATDRYPLPAPDRSRGIAVAQDVQRFEVRAWQPGAGWALLPSKGEVLPATGLELRLGLRDGRGPLSYRRVLEL
>NZ_CP040431.1|WP_012480440.1|2568806_2569169_+|type-II-secretion-system-minor-pseudopilin-GspI
MKRNMRGFTLIEVLIALAIVSIALAAVMRSVAVATDDQSRLRDRRLALMCAQDRWQELRLAGQPPQNARQRCVQGRSSFLVLQHIGTGSDGQPQLELSVVAEDAPRQSLARMQLPWTAAQ
>NZ_CP040431.1|WP_024956497.1|2568363_2568810_+|type-II-secretion-system-minor-pseudopilin-GspH
MQHVPRGFTLLELMVVLVIIGICTAGIGLGLGSLLDPARQLRQEAERLAQRLQVARDEARIDGRPLRWQADAAGYRFSRREGTRWVDVQRDDLLRPQQWQPAGIAVQPTTPIELSPEWIGVAWELRLSLQGRQLRLRDDGSGQLQVVQ
>NZ_CP040431.1|WP_043033593.1|2567798_2568248_-|general-secretion-pathway-protein
MDGRRWDRNRILTLLAATLLLAVVAYWGVTLSAVAPTAAASETHAEAPARPLFDAVASLPLVRLLSPGAVQTEVVVLGVMAGDHAPLALLSVDGRPAEAYAPGQRLGPCTVLASISASAVELNQAGQSRSLPVPELPPVPSDGIVLAAP
>NZ_CP040431.1|WP_024956499.1|2567332_2567668_+|hypothetical-protein
MRESLMVELRAALILALLLVLAPVRADEAKKQEDAAPCIEVQVNGERIPAWDCLQRKLAPASKAAKSPALPEAERLMRQPGNQLMQYNLEGTRQRMGDAFGRSVVPQRPAR
>NZ_CP040431.1|WP_154329464.1|2565514_2567131_-|BamA/TamA-family-outer-membrane-protein
MTPVPCRAVRLPLRLHPLVLALAALPLPLFAQEAAPAPSVNINEYIVRGNTVLDPRQIERAVEPFLGPGKTLADVEKARDAVNALYQQAGYQSVYVELPEQQVSGGVVLLKVQQTPIGQLRVVGTKHESPERIRERVPALAEGKVPDFDQAQKELTALNEGGRRQVMPLVREGQVPGTMDVDLQVEEKSPWRASASLNNDHSADTEKLRLSASLAYDNLWKRGHSANIGVYLAPEDTKQAKVFSASYTMPFEGTPWSLEGSGYTSDSRVLNAGGQVGTGTGTNVIGNGHSIGLKLNYRLAGSSQWWRQLSLGVDFKDTEEDTQMGKESLKTPLKYAPITLGFVGVRQGEQDQLSINTQLVAGTRRLFGYGSDAIGFGQKRYWADPSFVAFKAEVANTHTFSSDWQWYARGSLQVTDAPLVSAEQFAAGGMYTVRGYLSAEAIGDYGGLASLEWRTPAWSLWSGTDLRVYSFADAAYLRLRQPLPEQRDKYNLASVGLGAQLRLGEHLQLRLDYAWPYADGPVTRKDDPRLHFNISTSY
>NZ_CP040431.1|WP_043033319.1|2563691_2565476_-|MotA/TolQ/ExbB-proton-channel-family-protein
MDRLLSRVLLLLAALVALPVAAADANWWQAEWKYRKPITVDAGPQGAGLAGDPGRTPLLLRLHTGNFGFDGTQDAGNDLRFVSGDGRTVLAHQIEQFDPKLGLALVWVDVPAVSAAAPQTIWMYYGNEKAPASGNGQQVFDPDYTLVYHFAEANAPARDTTAYGNNAGAVVPPSEGSVIGRGVQLGAAPLPLPASASLAQEAGAPLTVSAWIKPGSNNAAQAIYARRDGASELVLGIENRVPFVQLNGQRSTLAQPIPEGQWAHVALTAEKGALQLYLNGRVVAQLSGELPALTTAPVVGADAPGAVQPLASFEGALDELRISRVARPAALLLADATAQGADSRLISYGADEQSAGQSHFAFILKAMPFDAWVVVAILGLMMLLSWAIMIAKGRHFGRTSKANAVFTESFGKLSGVPLRTLSDMDRQGKAPTAMHDGSLWRIYQVAIDEMQQRHQRDGNSGYLSGATIAAIRASMDAVMVREQEAMARRMNWLSTTIEGAPYVGLFGTVIGIMLVFVVAAMAGAVDINSVAPGMAAALLCTAAGLGVAIPALFGYNYLGARAEAIGADMAVFIDEFAARLAEEQDGRGPAAVQG
>NZ_CP040431.1|WP_005409874.1|2563267_2563681_-|biopolymer-transporter-ExbD
MGQKAKFGIKKREKGINVTPFVDVLLVVLVIFILTSNASIPGIEVNLPKASNSVALEKPKTKAITIDPSGQVFLDAYPVTMAELEDRLRTERATTPDFPVIVRGDAQVQYARVVEVLDLLRRLELAQVGLVTGKAQG
>NZ_CP040431.1|WP_005409873.1|2562562_2563228_-|TonB-family-protein
MRGRQLLVTVALVLAALLVLGIAVWWMLFRDTASTRRPVVQPPMLALPPPPPPPPPPPEKPPEPETPPEETIPEPEPLDQPTPAEEPTPTPDNADPVTMNADAQAGGDNFGIQSGSGGGSSGVGRGGAGNATYGRYLGYLMQQAISRDDKVKRLAFQLQVNVWLANDGRLEKVELVRGSGNEEADAAVLDALRRIGKVDQAPPPSLDFPARVLIQGRRPGA
>NZ_CP040431.1|WP_043033320.1|2560774_2562520_-|membrane-protein
MNDHVRARTDSRRLRPARRALLCCAVLLSLAAPAGAMAAETTMVKLIKGLIASGALKPEDGQALLVQAEAEAAAAQRGTVAAPSAASGGVALEAGDVRVPYVPQSVRDGIRDEVRQDVMAQAKSEGWAAPNEVAEWTKRIKVTGDMRVRSESRFFSERNSDIVSNWSSINSGNGFDTNTNTNLQLPPLLNTRQDRRNLWRIRARLGIEATIGQHTTAGVRLASGSSNGPVSTTEQLGGGLSKKDVWLDQAWLAYSPADWVTVRGGRFGNPFWTSDTLLSNDLNFDGLAANLKYDFDDGDLDLFGNLAVVPLEYTSDSSPSQSKVKTPNENKWLSGAQVGVNWRFNDDNAVRAALGYYDFKNISGRLSSTCSLYSGAVGCDTDWSRPAFMQKGNTLMLIRNIARNPQDPAGTPTPQYVGLASAFRLATLNLRWDTQLAQGIGLRLDGDYIRNLAYDKQAMFSRAQNGIVNNYGAGDTVGIDTFRSGDTAWMVQATFGATELKEKGQWQALLGYKHIEADALPDAYNDPNFHLGGTNARGYYVGGAYALDARSWISGKWMAAKEVSGAPLSIDVFQLEFNTGF
>NZ_CP040431.1|WP_111173942.1|2570338_2582722_-|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MSHPLPSAVHPAAPMRRNHPMAWAIAVALGSMVAPASQAQQAFSPGWFAERGAAQGSAAQSGRMPNGVPIQFQLPAQQQDAARQKLQQSIDNLGTAAQAIALQQRLQEQARQARREAGFIVADGLGKDGLSVDQNPLTRGWLNARDAIQSQGSDGRVQVTVEQTADKAILNWETFNIGGNTTLNFLQNPDWAVLNRVNDPQARPSQILGQLKANGTVFVANRNGVVFGNNSQVNVRNLLAAAARISDAQFRDNGLYSPDASSSALSDAFGKVMVEQGARIATHEPTSATRGGGYVLLAGHSVENAGHIEARKGQVQLAAGDSFVIRRGVGTATNTSSTTRGNEIAPRFVAGSTAGSVRNTGLLRAREGDVTLAGRNVEQAGVAVASTTLAQRGTVHLLASTSDAGSSVTLADGATTAVLVEDDGKATVLDTQRNSLIKESAEQDAIRAGARSATFDNLSQHNDRRDQSRVEIVSGGNIHFSADSLTVATGGQIIADAAARSYVDDAARVDVSGAVGVQVSMESNNVQVKVQGNELRDALDNRDSGKLTSSEVWVDRRRLVHVPAGTGGYAGERWYAAGGLLEVGGYLDNQGHSIGEWAAQGGTVLLGGREVITHGGSRINLAGGSLDVQSGVIRQSWVRGVDGQVYRLDDAPAEMLFDGLYSGHEVKQERWGITETFRDPIVFAAQRVDNGYTVGRDAGRLIISAPTAVLDGKVETATFQGAQQNRRPDTALEGYAQAQTAVARNAQLYLGRYDGQGRSGVFDSDVRLDDKARTKAAWSLLAPVNEERRGTVWLDIAELSAQQWGRIDLATADRIRIDGSLRLQAGGQLNLTGSEVELAGDIGIAGGQLSAGNLLDVQGRPTALLHDGRARTAIADGTRIDLSGEWSNASLAMPRDARGAWTDGGRLSLGNSHDVAVGAKATVDVEAGAALDLRGKAHIGKGGSVSLQANSSTVTTDGSGRVQLGEGSRFSGRGQGGGSFSLGTGGQVWVGDADLAGTSLRLDPGLFGSGFAQYDINGHHGVEVADGARLVATLPGLRLTQDARMATDRASALAAWDAPLYSADPSSGRVSQRAGASISLRSERNSVGGDLRVGKDALVAVDPGQTISLLGAGNIDVEGTLRAKGGRILIDDVRPENALYAGQRTERTWRFAEGALLDADADAISLPDSSGRLRGQVRAGGRIEIGGALDWETTAFVDNRPPEAFVVVERGARLQARGASAELDIDGQGRVRVDSDGGQIVLRSANALYLEGGMDAAAGGAGARGGTLGLAFGGSIHARGASDEVLRARAISLSQHSAPAQPLPAALEYGHAALSVEQLQAGGFDNLSVFGDIRAVGDVDLRLAQSLRIHGQGTSSLGMAVDAGLSSGLRLSAPYVRLAQARWRQMPGENLQGTAAVASSGPEDHALAVQAELIDIRDVTWLPGFKHVALESRSDVRLTNGIASSGNTSALMTAGSMDVTAARLYPTTGAVGTLVAGASAQTVQTADYWADPDAVLRIHGTGAATRPAPESALGTLRLVAATVQQSGNVQAPMGTLQLGGLIQNGTVGSRVELLPGSVTSTSGAGLSLPYGGTVDGVDWRVGTRSLGSLTPAGISSMGVTLKANEIEVAPGALLDMSGGGELTGAAFVSGRGGSVDVLRTALADANPRYEFSASGNPVYAIVPGRAGTFAPSGEEGFAAPAVGQQITVPAGVPGLAAGTYTLMPASYALQPGAFRVELGATGTSGIAQPIATGTGTWRVSGQQRTALGAAISPLLTDILLTPAAVVRRHSGYNETSYNSFAQSVADRRGESRGWQTIDALGLTLALGEGAGRADTPAIRFAGTARFGAATDNGRGGTLTATLASPAVGSLEIVDGGAQSQARDRGATFSDDALNAFLPARMMIGGQFNQEASQVAVTGQARSVAIRSGVTLNAPEVLVAAASGGSGVLVEAGATLDTLSFASANANASATLPYQVSGGLLAVSNQRLNLITGTTGVEAGPVAIDIGGCQTACDGQTRLVSDGSIAVATDGALQMRDSASYGTRQLGLSMAALNLGSAEAIALAAAAGALPSGMTMNQSVLQQLLRGNDATGAPALDTLSLVARDSVNVFGSVDLDARDSATGRSGLQTLVLGAQAIRGYGAATDRARILVDTLVWDGSLAASQAPGSDASVPPADPMVDRLGAGQLDIFTRQLQLGRAPFSRPSSEVPANRQVLGFSALNLSASEQLSFSAQGTLDVFQQRGDYLADKGWQYSGGSLGIDTPLLTADPAARLRVRTGGDFRLQGGTGKAGGDALGSELSIDANRITLDSTVALASGRLSANARQGITLGSRAALDLAGRKVSLYDVDKFSWGGDVLLSSDTGDIRADAASRIDVSARNNRGGRLTVTAMAGRADLAGVLQGAATGRYDAGGTLVPYDGGELVVRARQLQDFAGLNQRLTAGGVVGGRSFQIGEGDLRIGDEVKARRVDISVDAGSLTVAGRIDASGEQVGSIRLYARDQLQVDGTLDAHGTGLRVDSHGKIIDSPNRATITLGSAEGAVGLGSAAQLDLRAGSDVTVGGRPGQNDGTPRGTLKIDVPRLGSNDAAIAAATGLRIDGAADIQLNGVRRYDDAPLAATADVRGNRAQLVTQQWLDQVVDPHSVAWIDAALDNADLQQRTRALGDVRLRPGVQVLARRSDANPDGDLTIAGDIDLSGYRYGPEANRADPSRRGFGESASLVLRAEGNINVYGSINDGFAPPPSTPDEGGWQLYEGRNGSAGQTPFGGGLVVPVDGVKLQPGTEFQAGTRLNYDVPVESVTLPVGTVLPAPMVISQNLRLPAGTVLGAAVTTDSGQTLAAGTVLQQPLVLAAGARLGAGFRLRSAVQMAAQEWPAGATLPVALRLAREVELKVGAYIPSLTKVELPGNGPVNLRPADAGGNQGRNWALAPMLAEGTTSWDLTVVAGADAGAADPRSRRWGSEGSVVLADTHQGSIGTVKTEIIWVGDRALTERASLDWIGDTSYAGRPIAELADMFGFTEDEFCAMSADYCGPAPRQVAAQGSLDYWGDESYVGTPAKDFAAMFGMTEDEFCSTAPTYCAGGGTQTEVTTYGKRAGTPAWSVLRTGKGDLELLAAGDVVMKSGFGVYTAGTPTTLGEGRDAAFNSPRAAAPRNTALLGPNLVPGSYDAALAGYRAWYPDHGGNLRVEAGRDIVGDVWTARAESGTSERDWALYSSAAVGNWLWRQGTGSTTGVEPVPTSWWVNFGAYTNVSAAAGASPRMVGFTGFGTLGGGNLTLEAGRDAGVRDAIGDALDSTIAPRSGAIIAAVGSTGRVSDGQLHLTGGGDLQLRIGGALNPNLRATFSSLNASRAGQNLDLNGTFSNLRGSLQLDAGRIGAMGVTLESYATLGQLRAADLFAADAARPMGGPVLVLGDAVAQLQARGDVVLGGVADAGRVPLANYSAVLLDDGARAAGSTWFSLWTANTAVDLFSAGGDLAPGLAGPENVTGSNLWREQVQLVVRGGDDLLNYWLYPSRFSAIAAQGDIKLDRISTTPGTQDVILLAPSATGRLDVLAGGGIFAQPGATQIARSASDARLPGPFDPAFMAEQGDSAGNVTRTRHNLSVDGNIASPDASLPLFAFGPNTPLSSVSAALAPSRFYAVQGDIIGLATGARRTLNPNAGQRTQLNWFEAAGAVQLRAGRDILGVSMTALNTAPTDITVAAAGRDIVHLNATIAGPGNTEISAGRQLRQEDAGSIVSLGGIVQGDTRPGASIALTAGNQQIDFAALRARYLDPVNLADPAQSLASQPGKAVKVYNQELKQWLQQRFGMAADGDAALAAFDALPQEQQRIFLRQIYYAELREGGREYTDAEGPRFGSYLRGREAIATLMPDRNAAGTAIDRTGDIVMYGGSGVRTEAGGNIELMAPGGQIVVGVQGVVPPASAGLVTQGQGDIRLFSQDSVLLGLSRVMTTFGGDILAWSEQGDINAGRGSQTTLLYTPPRRVYDGWGNVILSPQAPASGAGIATLNPIAEVRPGDVDLIAPLGTIDAGEAGIRVSGNINLAALQVLNAANIQVQGESKGLPVLASVNVNALASASAAANSASQAAQDVMRKSQDEARRNQPSVISVQILGFGSGTSAINPPARGNTANSGYDANSAFQFPQASRDEGTQRR
>NZ_CP040431.1|WP_005413642.1|2582921_2584097_-|phosphate-binding-DING-protein
MNKYKTLAALVATALLATVGAASAQTVTGGGASLPADLYKGSSDSILPANFTYAVTGSGTGKKAFLENNSLLFSTTGTVHFAGSDSVLSSTELSNYTTNFNQPTNANRYGALIQVPSVATSVTIPFNKAGSAVDLSVAQICGVFSGAISDWSTIDANRSGPIQVVYRPESSGTSEMFSRFLTAACAAENAGTSNLVGGKFAIKSTFADLYKRDANGNLPAFLVAAPATGGTSLYNAVYAAEGRIGYVGPDVIPSVTDATKVAKVKGFSPDQVSVQATLDTVAPPTGTAAEDPANWVPVFGNPSAGYPIAGYTNLVIGQCYKDSSVATSLRGFLARHYPATYTVAYEKSITDHGFIPLTKAWRDAIRNRFVLASSTAGLNNPSTCAGIGRPL
>NZ_CP040431.1|WP_043033313.1|2584563_2585763_-|type-II-secretion-system-inner-membrane-protein-GspF
MALFDYQAANAQGRIEKGQLDADSPRGARQLLRGRGLTPVQVSAARSAGSGWGARRLSASELAWATRQLASLLAASLPLEGALSAVIEQAERPHVAQALTAVRADVRAGQRLTVALAARPRDFPPIYRALVGAGEDSGDLARVMERLADYIEERNALQAKVLTAFIYPAAISLVSVAIVIFLLSYVVPQVVTAFVQARQTLPMLTQMMLGASAFVRSWGVWVGLGIAALVVAWRLALRRPELRLRWDAMLMRVPMVGRFVLGVNSARFASTLAILLDAGVPLLRALEAARQTLGNALLARCADDVSARVREGAALGAALKVQKVYPPILVHLVASGEKTGSLAPLLDRAAQTISREIERRAMALTALLEPAMILVMGGVVLTIVLAVLMPIMEMNQLVQ
>NZ_CP040431.1|WP_154329466.1|2585770_2587204_-|type-II-secretion-system-protein-GspE
MSAATALPYAWVRSHGVMLSEVGGEPVLLGTAETAAWAVAELRRRHGPLPFQALDAATWQQRLSEQYRDGGDAAAVVGAAESEVDLDRLMQDMPEVTDLLDAQDDAPVIRMINALLAQAARDGASDLHIEPFETHSVVRYRVDGTLRDMVQPRRALHAALVSRIKIMAHLDIAEKRLPQDGRIAIRVGGRPLDIRVSTVPTGHGERAVLRLLEKDAGRLQLQRLGMADDTLATFTGLIRQPHGIVLVTGPTGSGKTTSLYAALGQLDSSTSNILTVEDPVEYDFAGIGQIQVNARIGMSFGTALRAILRQDPDTIMIGEIRDLETAQIAVQSSLTGHGVLASLHTNDAISAVTRLADMGVEPFLLASSLRGVLAQRLVRRLCTQCRRAEVDGEGRTVWRAVGCAACANSGYRGRTGIHELFVVDDRVRALIHEGQGEPALREAARRAGMRTLRQDGQRWVDSGVTTLEEILRVTGDD
>NZ_CP040431.1|WP_099498087.1|2587200_2589582_-|type-II-secretion-system-secretin-GspD
MRAMRSFACSTALALIVCMAHAPALVLAQDARDEPVQLNLVDTDIGGVLRMAARFTGRQFLVDPRVTGKMTVVSDGPVSRTQAYQLLLGALRMRGFAVVENGGVSRVVPQADAKLLGGRVGSGGAGGEVATRTFALRYENAAALVAVLRPMISPDNPITANPGNNTLVITDYADNLERIARVIASVDTPAGMDTDVVKLQQGIAVDVAAMVAPLLDAQGAEPTQKVVVMADPRSNSVLLRSSSPGRTRLARQLVEKLERAQDESGSLHVVYLRNAQANQLAGVLRGVVAGQSDAPAMGSNEGITPPPGDASRSTPAQPSQPQQAKPGGNALESQRLDPSRRDPIDAGSTGFSQNGISVQADVATNTLLISAPEPVYRNLRRVIDQLDQRRAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTTGGSGLNTNARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSKGGANILSTPNLMTLDNEAASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQEVSSIDAQSANSTAGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPVLGALFRSDTRKRAKTNLMVFLRPHVVRDPAAGQRLTRDRYDYMRNAQAGAQPAQSWALPALSAPQLPPQDLSVLGQGNARDDQGQPLQSSSLAALYPSGDGDAQLVQFAQGLDPARASQGVAQVRALGLQAYAEATPGESGQRLRVRLPRDPATLDPALQQLRGLGYTPELVIGP
>NZ_CP040431.1|WP_005409887.1|2589578_2590106_-|general-secretion-pathway-protein-GspM
MTTRTLWLGEGLVGLQHRWQRLPPRDRLMLWVMVVALLVAGLWSLWLEPLLKQRTYWQAELPRLQAQSRALAPLLRARERQQLAQSQHPTLAGLRDGIKTAGLAAGLHIEARDGRWHLQVQAVPADALWNWLLPVLADPAIELQQLQLTRTGDANMPAARISGNIVMVATAGAHP
>NZ_CP040431.1|WP_154329467.1|2590102_2591266_-|general-secretion-pathway-protein-GspL
MNVQLRVRLPALERLRADSAVDWAQLHKGDVLAHGRDTLAALGLRHPQAAVHACLDPNDLILLELQLPPLSGRRLQSALQGEVEAMLLDDLQEVALAHGAQAADGTVPVAWLGQQAIAQVQQMLASCALQLQALYPTPLLLPWQESHATLQVSGEHLLVRRGRDRGFVQWYGGRDACAVMQALAVRLQQAGVLAVQWIDGVPPTWPDSLPATAVTHERQTSGPLPGWSLPLPGAGRQAPRLAIGLALAAVLLAALGLQLQVSRWRIEGEALQRDMARQFSARFPEITDVVDPVLQARRALAVPLPAPPLPALQRQVASTLQAVPELAGQVRSLHYQPGQLDMELDADAQALADDPQRLEHWQQAVQAQGLQLARQAGGHLRVSGAGQ
>NZ_CP040431.1|WP_032966855.1|2591262_2592168_-|type-II-secretion-system-minor-pseudopilin-GspK
MSARMRSVSSVRQRGMAVIVALLVVALVAVIATALLTRQSAQLRALRGDQLRAQVRMAVDATLERAAQQLREDVKEQLTTVRSGRWARPLELQAPLPVQLQLVDAQSMFNLRNLLAHGRPDPEARRAFIALCAGQGLGQGACASAADHIQARLRDGDMQAQAPLPRESLIEQALPGADPVALQALARRTVVLPAQTLVNANTSDLRVLQAVTPVVEPARLQALLGERDAGHWLLNRGDIANRLQLSNEQMAVLPLGIHSEWFLAVGQVQADGSAVDFRALLWREYRDDGVRVQRVWTRIGA
>NZ_CP040431.1|WP_043033308.1|2592177_2592615_-|type-II-secretion-system-major-pseudopilin-GspG
MARQVRGRRARQQGFSLIEIMVVVVIIGILAALIVPRLMDRPDQARVVAARQDIAALMQALKLFKLDNGRYPSAEQGLQALVKPPQGGGAMPVTPYLDRLPNDPWGHPYQYQIPGTHGDVDVFSLGADSKPGGDAGNADIGSWQL
>NZ_CP040431.1|WP_043033307.1|2592672_2593257_-|hypothetical-protein
MADSRRISMLELDRHLSQSLEQARHAPLNVQRYGRSWVWVLSSDAWADAARWAALDGSAHPLAALRKALDLQLRPWPEAAMSPLPLDAGDARLLQRAALLVVVRDLNSAQRVYDDLRYHQAYRLFIGFDHGTAWSPMQCVRLLQACAHPLLRGCIDDALASVPQHLFESACAPAARIAPAQVHAQRISSGCLSY

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Crispr_ID: NZ_CP040431_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040431_6

3021601-3021700

Orphan

Consensus_repeat	Method
GGTAGATGCCCACCTTGGTGGGC	CRISPRCasFinder

1 spacers

DEDDh,csa3

The CRISPR arrays of NZ_CP040431_6

>merge|NZ_CP040431|6|3021601-3021700|CRISPRCasFinder
GGTAGATGCCCACCTTGGTGGGCATGGATCCAGGACGGCGCCAACCAAGGTTGGCGACTACCGCGGTACAGCGCTCTGGTAGATGCCCACCTTGGTGGGC

>NZ_CP040431|6|4|3021601-3021700|CRISPRCasFinder
GGTAGATGCCCACCTTGGTGGGC	ATGGATCCAGGACGGCGCCAACCAAGGTTGGCGACTACCGCGGTACAGCGCTCT
GGTAGATGCCCACCTTGGTGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040431.1\|WP_005413923.1\|3035354_3036272_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185110
NZ_CP040431.1\|WP_099484298.1\|3021750_3022695_-\|5'-nucleotidase	unknown	unknown	gnl\|CDD\|377624
NZ_CP040431.1\|WP_033833586.1\|3036317_3037466_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
NZ_CP040431.1\|WP_005413911.1\|3015483_3016005_+\|3-hydroxyanthranilate-3,4-dioxygenase	unknown	unknown	gnl\|CDD\|183930
NZ_CP040431.1\|WP_044570577.1\|3024289_3029266_-\|glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|377452
NZ_CP040431.1\|WP_033835832.1\|3031456_3034630_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NZ_CP040431.1\|WP_099484300.1\|3020276_3020963_+\|DUF2461-domain-containing-protein	unknown	unknown	gnl\|CDD\|274138
NZ_CP040431.1\|WP_005410251.1\|3037619_3038549_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|369777
NZ_CP040431.1\|WP_049448997.1\|3014087_3014726_+\|FMN-binding-negative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377290
NZ_CP040431.1\|WP_049460353.1\|3016167_3017442_+\|kynureninase	unknown	unknown	gnl\|CDD\|130873
NZ_CP040431.1\|WP_099484301.1\|3018840_3020280_+\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NZ_CP040431.1\|WP_033835127.1\|3014800_3015463_+\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|238448
NZ_CP040431.1\|WP_012480765.1\|3017473_3018841_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|223727
NZ_CP040431.1\|WP_005410245.1\|3029516_3030173_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NZ_CP040431.1\|WP_005410233.1\|3013765_3014080_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_005410232.1\|3013458_3013758_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_099484299.1\|3021018_3021570_+\|DUF2939-domain-containing-protein	unknown	unknown	gnl\|CDD\|378575
NZ_CP040431.1\|WP_154329551.1\|3030172_3031441_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|169982
NZ_CP040431.1\|WP_033833585.1\|3034783_3035077_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_049443314.1\|3022742_3023516_-\|NAD-kinase	unknown	unknown	gnl\|CDD\|179876

Protein	Function_ID	Function_description	E-value
NZ_CP040431.1\|WP_005413923.1\|3035354_3036272_+\|hypothetical-protein	gnl\|CDD\|185110	PRK15188, PRK15188, fimbrial chaperone protein BcfB; Provisional.	0.00666421
NZ_CP040431.1\|WP_099484298.1\|3021750_3022695_-\|5'-nucleotidase	gnl\|CDD\|377624	pfam06189, 5-nucleotidase, 5'-nucleotidase. This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (EC:3.1.3.5).	9.80845e-154
NZ_CP040431.1\|WP_033833586.1\|3036317_3037466_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	1.50557e-177
NZ_CP040431.1\|WP_005413911.1\|3015483_3016005_+\|3-hydroxyanthranilate-3,4-dioxygenase	gnl\|CDD\|183930	PRK13264, PRK13264, 3-hydroxyanthranilate 3,4-dioxygenase; Provisional.	2.02528e-108
NZ_CP040431.1\|WP_033835832.1\|3031456_3034630_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP040431.1\|WP_099484300.1\|3020276_3020963_+\|DUF2461-domain-containing-protein	gnl\|CDD\|274138	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein. Members of this family are widely (though sparsely) distributed bacterial proteins about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown. In several fungi, this model identifies a conserved region of a longer protein. Therefore, it may be incorrect to speculate that all members share a common function.	2.77389e-90
NZ_CP040431.1\|WP_044570577.1\|3024289_3029266_-\|glutamate-dehydrogenase	gnl\|CDD\|377452	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyze the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.	0
NZ_CP040431.1\|WP_049448997.1\|3014087_3014726_+\|FMN-binding-negative-transcriptional-regulator	gnl\|CDD\|377290	pfam04299, FMN_bind_2, Putative FMN-binding domain. In Bacillus subtilis, family member PAI 2/ORF-2 was found to be essential for growth. The SUPERFAMILY database finds that this domain is related to FMN-binding domains, suggesting this protein is also FMN-binding.	9.26576e-50
NZ_CP040431.1\|WP_099484301.1\|3018840_3020280_+\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NZ_CP040431.1\|WP_033835127.1\|3014800_3015463_+\|carbonate-dehydratase	gnl\|CDD\|238448	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	7.72217e-108
NZ_CP040431.1\|WP_012480765.1\|3017473_3018841_+\|FAD-dependent-monooxygenase	gnl\|CDD\|223727	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].	7.38662e-39
NZ_CP040431.1\|WP_005410245.1\|3029516_3030173_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	9.42099e-15
NZ_CP040431.1\|WP_005410251.1\|3037619_3038549_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	8.59407e-24
NZ_CP040431.1\|WP_099484299.1\|3021018_3021570_+\|DUF2939-domain-containing-protein	gnl\|CDD\|378575	pfam11159, DUF2939, Protein of unknown function (DUF2939). This bacterial family of proteins has no known function.	7.54732e-30
NZ_CP040431.1\|WP_049460353.1\|3016167_3017442_+\|kynureninase	gnl\|CDD\|130873	TIGR01814, kynureninase, kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. [Energy metabolism, Amino acids and amines].	1.43251e-180
NZ_CP040431.1\|WP_154329551.1\|3030172_3031441_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|169982	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit.	4.09048e-88
NZ_CP040431.1\|WP_049443314.1\|3022742_3023516_-\|NAD-kinase	gnl\|CDD\|179876	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed.	3.07945e-157

>NZ_CP040431.1|WP_099484299.1|3021018_3021570_+|DUF2939-domain-containing-protein
MKKLTALAVLLVLALAAWWFGGPYMAVHGLSKAIEERDTARLERYVDFPRVRSSLRAQLNDYLVRQAGPDVAASPFGALLYGLGDQLGGAAVETMVTPTGIGAMLQGHVLWKRGRNELQGGDAFGATEPARPLKNAEHHFEALDRFVIDVDRGPDQPPMKVVLEPQGLRWKVVDLQLGMSATP
>NZ_CP040431.1|WP_099484300.1|3020276_3020963_+|DUF2461-domain-containing-protein
MSTYFSDASFKFLRSLARHNDKAWFNDHRQQYEDHVRQPFLRLLGDLQPALAEVSEHFRADTRGVGGSLFRIHRDARFSNDKSPYKTWQGARLFHERRREVAAPSFYVHLQPGESFVGAGLWHPEPETQRRVRHFILDNPGSWKAAAHAPALRKRFDFEESEKLVRPPRGFPADFEFIDDLKHRNWVMRRSLDDATMTGPRLLSTLGKDLAGLGPFVDYLCAALDLEF
>NZ_CP040431.1|WP_099484301.1|3018840_3020280_+|exodeoxyribonuclease-I
MADSFLFYDLETFGQDPRRTRISQFAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGITPQQALAEGISEAEAFDRINEQLSRPGTCTLGYNTLRFDDEFVRYGLFRNFHDPYEREWRNGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANHVREGDAHEALSDVRATIGMARLFKQSQPRLWDYALKLRDKRFVGGLLDVAAMKPVLHISMRYPASHLCAAPVLPLAVHPTINNRVIVFDLEGEIDDLLELPAEVIAQRLYMRASELPEGVARVPLKEVHLNKVPALIAWNHLRADDHARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRAATVADVDASLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPPERQRWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDTRRQALLQSLRDWGQHLQETL
>NZ_CP040431.1|WP_012480765.1|3017473_3018841_+|FAD-dependent-monooxygenase
MIAHASRSLSIIGAGLAGSLLAILLSRQGWRITLYERRGDPRVADYESGRSINLALAERGRNALRQAGVEDEVMARAVMMRGRMVHPREGEPQLQRYGRDDSEVIWSIHRSDLNTTLLELAEQAGATVHFHRRLHTVDFDAGYARFIDDRDDSPHDIRFDTLIGADGAGSALRAAMNRRAPLGEDIAFLDHSYKELEIPPADDGSFRIERNALHIWPRGHYMCIALPNHEGTFTVTLFLPNQGDPSFATINTGAQAEALFAREFADTLPLIPNLRADWEQHPPGLLGTLTLDRWHQQGRAVLIGDAAHAMVPFHGQGMNCAFEDCVALARHLMEADDLEGAFAAFEAERKPNARAIQQMALENYLEMRDRVADPAFLLQRELEQELQRRWPTRFVPHYTMVTFLHTPYAEALRRTELQRDMLVAATTGHDSLDNIDWAALEAQIHAQLPVLEGAH
>NZ_CP040431.1|WP_049460353.1|3016167_3017442_+|kynureninase
MSDLLSRTHAIALDAADPLRPLRNEFLIPRHGGGEQTYFVGNSLGLQPRGAQAAVQEVMKQWGELAVEGHFTGPTQWLSYHRLVSAQLARVVGALPSEVVAMNTLSVNLHLMMVSFYRPTAQRPVILMEAGAFPTDRHAVEAQIRFHGFDPAECLVEVQPDEANGTITLTAIERAIAEHGPRLALVLWPGVQYRTGQAFDLDAITRAARLQGARIGFDLAHSVGNLPLRLHDVAPDFAVWCHYKYLNSGPGAVAGAFVHERHHRDTTLPRFAGWWGHEEATRFQMAPQFTPAIGAEGWQLSNPPILGLAPLRASLDLFERAGMEALRNKSLALTGMLEALVRARLSGVLDIITPAEPQRRGCQLSLRVIGGRERGRALFEHLRGIGVLGDWREPDVIRISPTPLYNRYLDVHHFVEEVEAWAGL
>NZ_CP040431.1|WP_005413911.1|3015483_3016005_+|3-hydroxyanthranilate-3,4-dioxygenase
MLASPINLHAWIEENRHLLKPPVGNKMIDNGDFIVMVVGGPNSRTDYHYDEGPEWFYQLEGEMVLKVQEDGAVRDIPIRAGEIFLLPARVPHSPRRPPGGIGLVVERKRLPHEKDGVIWHCERCNHKLHEEFFPLQNIETDLPKVFARYHASLELRTCSQCGHVDPLPVPAAG
>NZ_CP040431.1|WP_033835127.1|3014800_3015463_+|carbonate-dehydratase
MKDIHRLLQNNRDWADRIAKEDPGFFQQLSKQQHPEYLWIGCSDSRVPANQIIGMAPGEVFVHRNVANVVAHTDLNCLSVVQYAVDQLKVKHILIVGHYGCGGVHACLHNTRVGLADNWLRHVGDVVQKHQGILDAIEDDELKHARLCELNVIEQVANLCRSTIVEDAWARGQKLMVHGWVYSLKNGRVSEMGIDVGGPEELKPAYEKALSYVPRQGRRD
>NZ_CP040431.1|WP_049448997.1|3014087_3014726_+|FMN-binding-negative-transcriptional-regulator
MFTPRAFAETDLLWLDRLLARDPFVTVLTPGSDGLPELTRMPVLYRRDGDQIELRGHWARANPQSRHSGAAKVLVDGPHGYVSASWYPDKEPAARVPTWNYAAAELRGQLQTFDDADALAELVGAISDRFEASVGQAWRFDAARAEHGPELRAIVGFRFQVEHVQLKLKLSQNHPDANQQAVIAALEALASPSSHELAQWMRWHREQSASSG
>NZ_CP040431.1|WP_005410233.1|3013765_3014080_+|hypothetical-protein
MNDITASRDSWWLASLGNTLIWARLRVRPAGTAEVLDSDGNTLSYDSEDTARSQLFDAEFVEYDGLDEEDALVRGFSLHEVQPPQADSDEGLRGRMVQSLGGRA
>NZ_CP040431.1|WP_005410232.1|3013458_3013758_+|hypothetical-protein
MTLFFALCFVGVAVAGFSAFVIFWPLTLVHVRDRHPALAARFGSGAFLKPDALAWLLRRDYRQQPDRSLSGLATPAWVSLLTLLAGLGMAALLWLASLW
>NZ_CP040431.1|WP_099484298.1|3021750_3022695_-|5'-nucleotidase
MGDNTPRLLTVAVTSRALFDLEESHALFESDGVAAYAEFQRQHEDDILGPGVAFPVVRKLLALNQGASPENPRVEVILLSRNSADTGLRIFNSIQHYGLGIIRATFTAGEPTWPYVKPFGTDLFLSANPESVRSALRHGIAAATILPKPPGETAAAAADQIDTGRPAGQLRIAFDGDAVIFGDESERISREQGVEAFGRHERERAREPLSGGPFRGFLSALHTLQEVFPAGESAPIRTALVTARSAPAHERVIRTLREWGVRLDEALFLGGRHKGPFLQAFGADIFFDDSQHNIDSAREHVAAGHVPHGVANEG
>NZ_CP040431.1|WP_049443314.1|3022742_3023516_-|NAD-kinase
MSDTPRIAFLASTTEPAQMARAAMVSRYGDYTPEQADVLCPLGGDGFMLQTLHRHGHLGKPVFGMKLGTVGFLMNQYRGDDDVQARIARAEPANLRPLEMVALTESGTSTGSLAYNDVSLLRQTRQAAHIGIDLNGQERVAELIGDGVLVATPAGSTAYNYSAHGPVLPLGSHTIALTPLAPYRPRRWRGAILKADTEVRFRVLDPYKRPVSVTADSHETRDVVEVTIRESKDRRVTLLFDPEHNLEDRILSEQFVF
>NZ_CP040431.1|WP_044570577.1|3024289_3029266_-|glutamate-dehydrogenase
MKPQKTAAKTVKNKTKPAESEVAVTAGFSLEPVYTALRKRYPAAAQAEAVAFATDFYKRMESDEFPHHSAEEWAALAAETLEFARARKAGKANVRVFNPTAKANGWESPHTVLQIVNDDMPFLVDTVTMSLAEQGVGVHVLGHPVLRFTRDKAGKLVKVGEGDAESVMLLEIDRQPAEAMAAIEQAINKALDEVRAIVRDWQPMKDKALALADDLGKRQLPVDDASRKEAQEFLRWAADNHFTFFGYREYRVEKQGKEDVLAPLNDTGLGLMRGKDKSAARPVKTLAAQGLNATSGLKDALILTKTNARSRVHRAGYMDYIGVLEFDAKGKIIGEQRFLGLFTSSAYNRRPWEIPLVRQRHEHVMKQSGLAPASHSGKALRHILETLPREELFQSSEDELFRTAMGVLGLQERVRSRLFLRRDKYSRFISALVYLPRERFNTDVRLRIEAMLKDALHGEYVDSSVVLGESPLAQVHLIVRPKPGEMLDVDTAELEQKLAQVLRNWQDDLREALVARHGETEGLRIAARIGKALPAGYIEDNSTAVAANDVSQLDALTGPDDLRLSLQAVPRESGDGLRLKLYRQLDDIPLSDALPMMENMGLRVIAERPYRLSVDNAPVYVQDFEVESTAGAIDAASVDEAFGETFARVWHGDAENDGFNRLVLAAGLHWRQVAMLRGYCKYLLQTGVPFSQAYVEGTFARYPLLARLLVELFEARFDPATGHESKDDIAAGQAQLKAHFDVLAAGDDATLKVLKTVVDARKGDRDAQMQAARDALLKLMDRVSSLDEDRILRSFMGVIDATLRTSYYQTDANGQHGHVISFKFDSALVPDLPKPRPYREIFVYGPRVEGTHLRFGAVARGGLRWSDRREDFRTEVLGLVKAQMVKNTVIVPVGAKGGFFAKTPPVNGDRDAIFANGVACYKLFIQGLLDITDNIVNNKIVPPVDVVRHDMDDPYLVVAADKGTATFSDIANGLAIAHGFWMGDAFASGGSVGYDHKGMGITARGAWESVKRHFRALGRDSQTQDFTAVGVGDMSGDVFGNGMLLSRHIRLVAAFDHRHIFLDPNPDAATTFVERERLFTVPRSSWADYDAKLISKGGGVYPRSLKSIEITPQVREALGLDDNVKALSPNDLMSAILKAPVDLLWNGGIGTYVKAASEQHSDVGDRANNALRVNGGELRCKVVGEGGNLGMTQLGRIEAAQAGVLLNTDFIDNSAGVDTSDHEVNIKILLNDVVRAKKLTVEQRNKLLASMTDEVAELVLNDNYRQNQALSLMERMAVKRLGSKQHFIRTLEQQGLLDRQIEFLPSDAELSQRKARGQGLTRPELSVLLSYSKLVAFAQLLESDIPEDPYLSKELQRYFPTPLQKKYADAMERHRLKREIIATAVTNQTINRMGATFLMRMQEDTGRSIAEVAKAYTISRETLDARALWAQIDALDGKVPESVQIDALEVIWKLQRSFVRWLLSRPGAMPGITEAVNRYQGPFNDIRVASGVLPDSQRPTYEALVAEWKEKGLPSALAQQLAELHFLEPAFDIIELARTRKLKPVDVSKVHFRLGDALQLPWLFEQVDALEVNGRWHAVARGVLRDELAANHRNLAGQVLGTKGSSAEAKVAAWMGRDDNSLRFTLAMLAELAEQKTLDYPTVSVAVQRLGQLAAHGA
>NZ_CP040431.1|WP_005410245.1|3029516_3030173_+|TetR/AcrR-family-transcriptional-regulator
MNPAYLPVALDARDERVFDAVRELLAQQGMQMSMEAVAQHAGCSKQTLYSRYGSKQELLRRVMQRHVGHATGAMVRALRTDDLRASLLQFATDFLEHFNQPHVGQACRLIAADAAQFPEEARTLYRHGAGALTLHLAEWIETVCMRGQLRHDDPHFMAELLLSMIAGQDFDKQRFHTPHRDDARLRRRWAEFSVDSFLRAFAPQPSPAPSSNQPRSSS
>NZ_CP040431.1|WP_154329551.1|3030172_3031441_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MTAPLRTLALTCAVAVALAACKKPEQQTPPPPEVGVIDAKPQTLPLQRELVGRLSPFRSADVRARVPGVLLKRVYQEGSQVKQGQPLFLIDPAPLRASLNASEAQLASARATYANAKVAADRARSLAPQQFVSKSDLDNAESAERTALAAVKQAEAAVTSSRISLGYTEVTAPISGVANKQQVTEGALVGQGDVTLLTTVDQLDPLYVNFSLSVDELTQLRAQQAKGALALSGDGKATVNVKLADGSTYSEPGTLDFSSTTVDPATGAVSLRALLPNPQQILLPGAFVSFQANLGERNNAFLVPQQALLRDTTGGYVMVVGADGKVARKNVKTDGAQNGNWLVSDGLAAGDKVIVAGVQKVKEGAPAVAKPWPPGQDANGKPAAGGAAPAGTAPAAGKAPADAAKPEQADAAKPAATDSNKQ
>NZ_CP040431.1|WP_033835832.1|3031456_3034630_+|multidrug-efflux-RND-transporter-permease-subunit
MPKFFIEHPVFAWVVAILISLSGVIAILNLGVESYPNIAPPQVTVSATYPGASADTTEKSVTQVIEQQLTGIDHLLYFSSSSSSNGRAQITLTFETGTDPDIAQVQVQNKVSLATPRLPSEVTQQGVVVAKANAGFLMVVALQSDTPTINRDALNDIVGSRVLDQVSRIPGVGSTQQFGSEYAMNIWLNPEKMQGYGLSASQVLAAVRAQNVQFAAGALGSDPSPEGQHFTATVSAEGRFSSPQEFENIILRANADGSRVLLKDIARVAFGANNYGFDTQYNGKPTGAFAIQLLPGANALNVAEAVRAKMDELQPSFPSGVTWFSPYDSTTFVKISIQEVVKTLFEAVFLVFLVMLIFLQNFRATLIPTLVIPVALLGTFLGMWMIGFTINQLTLFAMVLAIGIVVDDAIVVIENVERIMTEEGLAPKPATQKAMTQITGAVVAITVVLAAVFIPSALQGGAAGEIYKQFALTIAISMAFSAFLALGFTPALCATFLKPTHNDNPNIVYRTFNKYYDKISHTYVGHITSAVRHAPRWMILFVVLTALCGFLFTRMPGSFLPEEDQGYALAIVQLPPGSTKGQTNEVFAQMRGILEKQDGYEGMLQVAGFSFVGSGENVGMGFIRLKPWEERKFTAPEFIQNMNGAFYGIKEAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGYEQLTQARNILLGQAAQKPDHLVGVRPNGLENAPQLQLHVDRVQAQSMGMSVSDVYSTIQLMLAPVYVNDFFYEGRIKRVTMQADGPYRTGQESLKSFYSPSSLTTNADGTNAMIPLNTVVKSEWVSAPPSLSRYNGYSAINIVGSQAPGTSSGEAMQTMESIVNEDLPAGFGYDWSGMSYQEILAGNAATLLLVLSIVVVFLCLAALYESWSIPVAVLLVVPLGVLGALGLSMLRGLPNDLFFKIGLITVIGLAAKNAILIVEFAVEQRAAGKNLRDATIEAARLRFRPILMTSFAFIMGVIPMAISTGAGANSRHAIGTGVIGGMLFATLLGLLMIPVFFVVVRRMLGDKLDEPSKEFMERQRDADAAHRPDR
>NZ_CP040431.1|WP_033833585.1|3034783_3035077_-|hypothetical-protein
MLIYRGAGLLTLLTPIAAVLLILILFPDPAVGRGNTSLSQVLLAFGLGSAINTVLGFVLNRKPRAPGQHAPHHFFFLPMQWPALAIVAACVVIAVLR
>NZ_CP040431.1|WP_005413923.1|3035354_3036272_+|hypothetical-protein
MERAPLRRFSRPALLLGALFAASSVQDAHAAGVLVCDNCRDPRALALYSGTGPTIVVDFQQRRLHGFDVEYDRELRRYRATRAQIPEPINASFNRIMGMLDNNVPTVQFAPRQWAGRGVQYEVHPDDPQYANGIGFPEEHKNLNAYDVVQMATERFRLESAMGKAFTGATTSSRAWNSMATFLSSIGLSFVSKALGIDGAIYRITWRDGSKTTLAIVSSSVDTARYVQGQSKDANGNMIPDGAATSPGLAQHFAGTYNFNSRDDLDRWIDSGRLYGVNMFPGAPPESLQIVCEWNGTDIVCRLPR
>NZ_CP040431.1|WP_033833586.1|3036317_3037466_-|acyl-CoA-dehydrogenase
MDFSFTEEQLMLQDVARRIAQEKIAPSAEHHDRTGEFPLDNIRLLGENGLMGIEVPTEYGGAGMDPVAYVLAMVEVAAADAAHSTIMSVNNSLFCNGILTHGTEQQKQTYVRAIAEGEAIGAFALTEPQSGSDATAMRCRAVKQADGTFVINGKKSWITSGPVARYIVLFAMSEPDKGARGITAFLIDTDKAGFGRGKTEPKLGIRASATCEIEFNDYVAQAEDVLGQEGEGFKIAMSVLDAGRIGIASQAIGIARAAYEATLEYVKERKAFGAAIGTFQMTQAKIADMKCKLDAALLLTLRAAWVKSQGKRFSTEAAVAKLTASEAAMWITHQAVQIHGGMGYSKEMPLERYFRDAKITEIYEGTSEIQRLVIARNETGLR
>NZ_CP040431.1|WP_005410251.1|3037619_3038549_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MDLEDWSTRLKVFADATRVRLLALLEQEELTVAELSAITRLAQPRVSTHLARLKEAGLVRDRRAGVSAYYRFDEAQLDPAQRALWHALSNGSDDPLLRQDAERVAAVLAHRASDQNWADSVAGDMERHYSPGRTWEALARTALPLLETGDVLDIASGDGVLAELVAPHAKRYICIDTSARVVAAASERLRRLPNVEVREGDMHALPFKDNSFDLVVLMHALTYASKPAQAVTEGARVLRPGGRLLLCSLARHEHKAAVEAYGHVNLGFSDKELRRFVDKAGLQVSSLETVTREKRPPHFEVISLIAHKP

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Crispr_ID: NZ_CP040431_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040431_7

3747556-3747668

Orphan

Consensus_repeat	Method
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040431_7

>merge|NZ_CP040431|7|3747556-3747668|CRISPRCasFinder
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGGCGGTAGATCCGCGCCATGCGTGGATGGGAAAGCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGTTGCGG

>NZ_CP040431|7|5|3747556-3747668|CRISPRCasFinder
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	CGGTAGATCCGCGCCATGCGTGGATGGGAAA
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGTTGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040431.1\|WP_005410876.1\|3753739_3755902_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP040431.1\|WP_005410871.1\|3749381_3749624_-\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NZ_CP040431.1\|WP_099484110.1\|3746353_3747442_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP040431.1\|WP_060380571.1\|3734586_3735231_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_143569567.1\|3757374_3760443_+\|formate-dehydrogenase-N-subunit-alpha	unknown	unknown	gnl\|CDD\|273689
NZ_CP040431.1\|WP_005410875.1\|3753170_3753557_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NZ_CP040431.1\|WP_005414359.1\|3756417_3757083_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP040431.1\|WP_060380230.1\|3740694_3741402_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|237939
NZ_CP040431.1\|WP_060380231.1\|3741418_3742552_-\|pilin-protein	unknown	unknown	gnl\|CDD\|284778
NZ_CP040431.1\|WP_005410874.1\|3751051_3753163_-\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|236794
NZ_CP040431.1\|WP_060380232.1\|3742548_3745275_-\|usher-protein	unknown	unknown	gnl\|CDD\|185210
NZ_CP040431.1\|WP_099484781.1\|3760453_3761371_+\|formate-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|273705
NZ_CP040431.1\|WP_012481149.1\|3745325_3745835_-\|giant-cable-pilus-fimbrial-subunit	unknown	unknown	gnl\|CDD\|367947
NZ_CP040431.1\|WP_154329697.1\|3736220_3737252_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377158
NZ_CP040431.1\|WP_154329590.1\|3749712_3750651_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239115
NZ_CP040431.1\|WP_154329589.1\|3738121_3740626_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240612
NZ_CP040431.1\|WP_060380570.1\|3731952_3734376_+\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|227342
NZ_CP040431.1\|WP_005410877.1\|3756007_3756307_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP040431.1\|WP_060380572.1\|3735407_3736151_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_005410870.1\|3747807_3749085_-\|citrate-synthase	unknown	unknown	gnl\|CDD\|180164

Protein	Function_ID	Function_description	E-value
NZ_CP040431.1\|WP_005410876.1\|3753739_3755902_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP040431.1\|WP_005410871.1\|3749381_3749624_-\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	3.97798e-51
NZ_CP040431.1\|WP_099484110.1\|3746353_3747442_-\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	2.91786e-05
NZ_CP040431.1\|WP_143569567.1\|3757374_3760443_+\|formate-dehydrogenase-N-subunit-alpha	gnl\|CDD\|273689	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit. This model describes a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase (pfam01568 and pfam00384, respectively). The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilized mainly in the nitrate respiration by nitrate reductase. In E. coli and Salmonella, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in E. coli which contain selenocysteine. This model is well-defined, with a large, unpopulated trusted/noise gap. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	0
NZ_CP040431.1\|WP_005410875.1\|3753170_3753557_-\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.07399e-58
NZ_CP040431.1\|WP_005414359.1\|3756417_3757083_-\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	2.7169e-120
NZ_CP040431.1\|WP_060380230.1\|3740694_3741402_-\|pilus-assembly-protein	gnl\|CDD\|237939	PRK15308, PRK15308, fimbrial protein TcfA.	1.69116e-49
NZ_CP040431.1\|WP_060380231.1\|3741418_3742552_-\|pilin-protein	gnl\|CDD\|284778	pfam07434, CblD, CblD like pilus biogenesis initiator. This family consists of several minor pilin proteins including CblD from Burkholderia cepacia which is known to CblD be the initiator of pilus biogenesis. The family also contains a variety of Enterobacterial minor pilin proteins.	2.61358e-51
NZ_CP040431.1\|WP_005410874.1\|3751051_3753163_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP040431.1\|WP_060380232.1\|3742548_3745275_-\|usher-protein	gnl\|CDD\|185210	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional.	0
NZ_CP040431.1\|WP_099484781.1\|3760453_3761371_+\|formate-dehydrogenase-subunit-beta	gnl\|CDD\|273705	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing. This model represents the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (TIGR01553) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	1.584e-156
NZ_CP040431.1\|WP_012481149.1\|3745325_3745835_-\|giant-cable-pilus-fimbrial-subunit	gnl\|CDD\|367947	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit. Fimbriae, also known as pili, form filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometres. They enable the cell to colonise host epithelia. This family constitutes the major subunits of CS1 like pili, including CS2 and CFA1 from Escherichia coli, and also the Cable type II pilin major subunit from Burkholderia cepacia. The major subunit of CS1 pili is called CooA. Periplasmic CooA is mostly complexed with the assembly protein CooB. In addition, a small pool of CooA multimers, and CooA-CooD complexes exists, but the functional significance is unknown. A member of this family has also been identified in Salmonella typhi and Salmonella enterica.	2.2064e-20
NZ_CP040431.1\|WP_154329697.1\|3736220_3737252_-\|hypothetical-protein	gnl\|CDD\|377158	pfam03895, YadA_anchor, YadA-like membrane anchor domain. This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterized. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi and others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerization.	3.41931e-06
NZ_CP040431.1\|WP_154329590.1\|3749712_3750651_-\|nucleoside-hydrolase	gnl\|CDD\|239115	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR). .	4.20689e-119
NZ_CP040431.1\|WP_154329589.1\|3738121_3740626_-\|hypothetical-protein	gnl\|CDD\|240612	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll. This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.	1.299e-15
NZ_CP040431.1\|WP_060380570.1\|3731952_3734376_+\|penicillin-binding-protein-1A	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP040431.1\|WP_005410877.1\|3756007_3756307_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.39874e-21
NZ_CP040431.1\|WP_005410870.1\|3747807_3749085_-\|citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0

>NZ_CP040431.1|WP_099484110.1|3746353_3747442_-|hypothetical-protein
MSTRFDPPERGPLGPDVAAVVTAPIVAPPSESAVSWGAIFAGATAAAALSLILLILGVGLGLSSVSPWSFEGVSKETFGWSSIIWLTFTALAASGLGGYLAGRLRTKWTQIHGDETYFRDTAHGFVSWAVATLLTAGLLTSAIGGVLGAGAKVAGAAAGVAASTAGVAAAGAGSTAAAAPEGDLNYWVDSLFRNATDAGPAAAGAPPAPGAPDAASGVAATDPAPPPLAASVGPRDVRVGLPPRPMPGNGPMGDRREVRAEVNRIIVNSLQGDGLDPADTQYLAQLIARETGMSPAEAQARVTDVQTRMRAALEKARNTAKQAADDARKATAYAALWLFITLLIGAFFASLSATWGGRRRDL
>NZ_CP040431.1|WP_012481149.1|3745325_3745835_-|giant-cable-pilus-fimbrial-subunit
MHAIIKKAALAAALATASLSAHAVETKISVYADVDPTLALLRDDGTPLPDMVTLTHDPLRGLIPNTQRVRIHSNDDKADIEARIDGSFFLANETGTVTVPMTISLNNRALGAAAIEYKAADLFNGAGSTPGASISMPLTIAQTTPAPILTKGAYSGLVNVVLNQKAATP
>NZ_CP040431.1|WP_060380232.1|3742548_3745275_-|usher-protein
MTLHAPAVTRLAVALALALSTPLAAARGVPPGFEDLVEGQTEQLDIQLFGRSAGLSPVRVTLEHVQLEDPARVLQSLDLPAEAQAALLPALSQPLPRNSHLACRFGGASAGCGYIDPPEAPDEVRALYDEGEGAVRLFVARQWIPGKPAAERFHTVTANAENAFLHQQTLNLSGGRDYQSLSARGVGTLGLFDRGHLSAEWYYNQQRYRSHSDDDFQFDNVYYRHDLGPAHYLQAGRMDRRNLSSPQGGTFSFSMLPLDRFQGARLGTTQAYVDTDAAVQASPLTVLLAHDARVDVFDGERLLQTFYLQAGINQIDTRNFPFGNYLVRMRIYEDGVLVRTEEAPFDKGGDWTNSQWQWFVQGGHRNERRSDAFDGERIAMAGVRVPLGRDAAMTAGAATFGGHRYGELRLDLRRVMATQEVRATFSGMRGSDGSNGQQHQLSYRRTASWNLYQQRMRGKACQFEAEARDQLGCTNALSGSMSLPLAGGNVYVGYTRRQTWRTGWHRPAFEQDPSFGLEPLLPPGPLEPRREPLLSRTWQASFSRSHRWQDFSVSTRVGVWRQNSTDSVRGSTERDRGIYVNLSLSRRHRSAAGDGQRRYAVDVRQPQHQRPAIDYSIGQSLRQELDTQYRELSAELRANNNERYSASLGGQLQNGIGHTSASVARYQQRGRSETGYSGAHSSGFALGRRGFYWSGANGADAGLAVQVADTDDADLRGVAAELQVGGLRRQRLQIGERRLLPLPAYQSQRAEVQDASTLDSVAAIRVTGVGGARPMFLTPGKLMRMPVPIEVTYTFIGHARDLAGAPLGGARILNAPVPGTSANGGFVADFPRRETTLYLLQDDRLLHCPLQVRERRQVVLLVGAVHCEPLAVAQLPAEIRQQARVTRLLQERALIAATPRTAAAGGTP
>NZ_CP040431.1|WP_060380231.1|3741418_3742552_-|pilin-protein
MNRRWMFVLMLVCALVLVMPRAWAQWPPETHPSDQSRDIVMSWDRSAVPGDVELWAPRTVLGFSHDLALKYGQIHVVCESASDSEFGRCPLDGEPGVSLGSSNVDLLFVEQRTGLRSELRAQGYLQRVMSDWVCAIDYWDTLRRQLNASFWYICSSGQPVGTGVYLEIPATELSRLVAGHWKATMRLNIKADPAAAPVATATFNFDFTVTDYDAISIYFPTFDTVAPLVNLDLRYDPIQKVVGGRKQLDMCLYDGLGSQSEYLDVTVRDSGPRPPAGSDFSLWHRDGGSDASQRLDYRVHLDYGGHRLAMKHNVKQQLRGIDSAQLRLVMLPGISQPVYCVPTPLTLETPPTPIASQRPGLYEGELTVVLDVPTAKP
>NZ_CP040431.1|WP_060380230.1|3740694_3741402_-|pilus-assembly-protein
MKKLLFCLLPVSALLALPAHANLSIHPMRAAVEAKRGTQIRVYSQSTIPQYVQTRLRRIVNPATPAEEEQEMEASDAAIAITPGKFALSGGGNRLIRVIPLQQVQKETAYRLYFEGVRGPDDAPLEDGEGAQANIGVSLVWGALVNVTPDDGVVDLRLQDNTLHNTGTLRVGIIGAEECTAAGTCTPHPVSHSLYPDAALTLPFQLQPGNSLQLRYRLTRDGYREHVRTIAPTTT
>NZ_CP040431.1|WP_154329589.1|3738121_3740626_-|hypothetical-protein
MNRIYRRIWNHAKGCWEVASELTRPCGRKSSRAAGAGGLLMVALMLAGGEVHAKTRYYIGCDPFNLGNGEFVSCSPITGSYEDSTFIGYALSSGRNSLGYGAGVNMKGDNTTAFGIGARINGQNSAAFGFKASTYAVDSVAVGYNARTSADGGHNVAVGANAYAAYIGATALGNKAEARAQNAIALGSGSSSRGVDALALGANSSTSAAGSMAVGANSSATRTNAIALGLSSVAQQENAVALGASTFSNGVDGVALGSRARVDTGAGTGGVAIGGGAGAGSLGYTGAIAIGGESRALTDGVALGYAASASAQGAVALGVRSVATEANTVSVGSASVRRRIVNVADARITASSTDAVTGKQLHAMNERVDGMIKQDSAGGVVRIANSNTGTEVSMRNAVLATRKVSGVSDGALTTTSTDAVNGRQLNTTNGNVTKAQTAADAAKADASKALAQVTTVTGLIGQASSTSSVRLGEKNSGTSLDIRNSANANRKVTGVADATLSTSSTEAVTGRQLNTTNENVAKAQTAAGEAKADASKALTQVVTLGGLVGQVSATGNVRLGEKNSGTVLDVRNSANANRKLTGVAEGVVSDSSFEAVNGRQLNATNDKVAAVESVARTAGTEAAAAKTDAAKALVETAALGGLVAQVSTTGNVRLGEKNGGTTLDVRNSANANRRISGVADGLLNASSAEAVSGKQLYSTNSRVSALEDVSQFVSIGAAPTSEPAEAGPVGVAIGNSAKTGNEGGTAVGTHSKSLGRNSVAVGRASTVHEGSDNGFALGAGAEVGISEGGARGGLRLALERRLGKGRMDHWRSVKARKRMRLALHHLEAQLLIAA
>NZ_CP040431.1|WP_154329697.1|3736220_3737252_-|hypothetical-protein
MVLKGADSSLALGVGAVATEKSTVSFGSGSIQRRLVNIANGTANHNAATVGQLRGALSALGGEVDANGNIVGPSFAVQGQSQSTLNGALEALDGAVVSNRSRVNQVESQLRSVFQDTPSVRADGLNQLTLAGTHGMVISNVANGLIAAGSRDAVNGGQLHSMQQQLNGRMDGLEQRIDAPQPQPQAMAVASVPEPEAPVPQAEGGQQVASVGEGEKPAPQPKTKEDTPKPQVDTAELEKMLARANEYTDGAISNFERRLDKMDKRFNRMAAMSSAQTAMAMNTAGLATYNRLGAGVGYSEGESAMAVGYQRVLNEKGSATFSLNGAFTNSGERSMGVGVGIGW
>NZ_CP040431.1|WP_060380572.1|3735407_3736151_-|hypothetical-protein
MYRWVSGIVSYRTFYIWRARFRYYTRNLDLWTLMSGLCIAGLLLVLWYLWQMLGVPPPRVHPQAAALRIEGVTSEAIHRIVLVRHAGRTPGAPFTTPEEVRASTLRTMRVRQVMDSEVVWRLKADMLADIADYITATGGCVPYDCRRIRARLEDVRRAGVENAQINTALLTILEVSLDQMPSLEAVEHERVKSGWSDGFNDIYDQIWLLRGLQVMHAQMMREYPQRAPVPWLPRLLSDPLRDTRFVW
>NZ_CP040431.1|WP_060380571.1|3734586_3735231_+|hypothetical-protein
MHRARQHAASQTRERRHRLAHEAARLMAEGGIRDYHQAKLKAASRLGIHDDASLPRNTEIEDALREYQRLFAGPQHGSELQRRREAAMRALEFLHGFSPRLAGPVLEGTADANSPVQLHLHSDDPEAVHRFLDEHGIPAESRTRRLRMDRERCLDVPVWVFSAEELTFDLAVLPYDALRQAPLSPVDEKPMRRASVAQLRQVLAEAEISAYIGG
>NZ_CP040431.1|WP_060380570.1|3731952_3734376_+|penicillin-binding-protein-1A
MTRLRRWLRWIFLIVLVLALIGAAAVGGLYYAVSSKLPDVQTLRDVEMQEPMYVYAADGKLMAVFGETRRTPITMKDVPEKLKQAFLATEDARFYEHGGVDYMGIGRAVWLLATTSDKRVPGGSTITQQVARQFFLSSEYSYTRKLAEILLARKIESELSKDEIFELYLNKSFFGNRAYGVAAAAEFYYGKKLNELDLDEMASLAGIPKFPSSGNPISNPERARQRRDNYVLQRMADLKFVSQAEADAAKAVPMHATAHEPPVQVDAPYVAELVRQEMIARFGGDVVNKGYHVTTTIDSTLQTAANHSVRDGLLLYDHRHGWHGVEKQVQVGAGEDAAALAEHLRGMYGQAGLLPAIVASTGADGSATVVLANRSEIVLPAGAAKWTNKTPGKLVQRGDIVRVRAGAKEGEWLLDQIPRGQSALVSLDAHNGALKALVGGFSFSGNKFNRATQARRQPGSSFKPFIYAAAFDKGYNPASIVLDAPVVFRDRRGKTWAPQNDGGGFRGPMRLREALVQSRNLVSVRLLDGMGVDYARKYISEFGFAESELPPNLSMSLGTASLTPLSVARGYAVFANGGSRVDTWLIDQVNDRDGNLVFKENPALACRDCAGSSDQPVNQVVDGFNFGAPAPKVDPAAAAKAEAKTETPAAPANPDARTAPRAIDARTAYQLVSMMRDVVQRGTGVQAKVLGREDVGGKTGSTNDHRDAWFSGFGGPYVTTVWVGRDDFRSLGYREYGGKAALPIWIDYMRTALKDTPIAQNEPPSGMVQATLNGATEWVKVEDMDRLTDYDLNLNTPQADAAAFDIF
>NZ_CP040431.1|WP_005410870.1|3747807_3749085_-|citrate-synthase
MSDLDQVTLNAGDKSVVLPVIKPTLGNDCVDIAKLTKETGFFTYDSGFTATASCKSAITYIDGDKGVLLYRGYPIEQLSEKSSYVEVAYLLINGERPSAEQLKAFTDELTAEANVDESINTLIGSFAKDAHPMAILAAAIAQLSAIYHDSLDLSDAEQRRQAAVRLIAKVPTLSALIYRHGKGLPANKPDTSLDYVSRFLKQTFESADGQYDLNPDVVKALDLLFILHADHEQNASTSTVRLVGSTGANPYASVAAGVTALWGPAHGGANEAVLKMLEEIGSADNVESAVVKAKDKTSGFRLMGFGHRVYKNFDPRAKVIGEMTSKVLKQLGVQDPLLDVAVKLEQAALQDEYFVARKLYPNVDFYSGIIYKALQIPTEMFTVMFALGRTSGWVSHWLEQQVDPEMKIGRPRQVYTGSDVRDYQG
>NZ_CP040431.1|WP_005410871.1|3749381_3749624_-|type-B-50S-ribosomal-protein-L31
MKADIHPNYRDVVFHDVTSDFKILTRSTMATKETIQWEDGNEYPLVKVEISSASHPFYTGKHKVIDTSGRIDKFQKRYAR
>NZ_CP040431.1|WP_154329590.1|3749712_3750651_-|nucleoside-hydrolase
MTHKIPLLIDTDPGVDDALALLMAFADERHDVVALTIAAGNVGLQYTVRNALKLCDIVGRTDVPVFAGSPDPLLHPSVDAAHVHGRDGYGDVDLPPPSRQAEAEHAALAILRLSHEHAGELMLVMLGPLTNLALALKLDPTLPERIKRIVVMGGAVTCHGNITPAAEFNIAFDPEAAHVVFTSFEHLLVSDWEATVAHGLPLQDAEKWLQADSDRARFYELISRKTRGLSEDSKGGRWYTADAVAMAWALNPEGQLRVESRPLNVELNGTFSRGATIVDWNRQTGQPDNCDLLMAYDQQRFEALVRQALGAD
>NZ_CP040431.1|WP_005410874.1|3751051_3753163_-|ATP-dependent-DNA-helicase-RecG
MARKAAVTPVLSPSGEASLAMLAGVGPAVAAKLQARGLATLQDLWLHLPLRYEDRTRLTRIEDLRNGVPAQVEGRVVAVERGMRYRPMLKVAVEDEGRGTLVLRFFHFRQQQVGQFAVGNRLRCFGTPKPGQLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPMTMRKLIGQALDRLPEESALELLPSGWLDGLGLPSLRSALLTVHRPPPDADLAALAAGTHPAQRRLAMEELLAHHLSLRRQRIALQAHHAPPLAGPGKLAKALLKQLPFALTGAQARVFKQIREDLARPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWLEPLGVRIAWLAGKVTGKARAKVMEQVASGEAQVVVGTHALMQEAVVFQDLALAIVDEQHRFGVHQRLALRDKGAGGNSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQTVALNNDRRPELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRVGLVHGRLKAAEKLATMVAFKAGDIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQLRGRVGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQTGLAGFRIADLARDAGLLPGVHDLAERLLDQQPALADRVVQRWIGTAVRYASA
>NZ_CP040431.1|WP_005410875.1|3753170_3753557_-|RidA-family-protein
MSRQIINTEKAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGDIVGAGDVEAQARRAFDNLKAVAEAAGGSLDKVVRLGLYLTDLGEFAKVNAVMQDYFQAPYPARSTIEVSGLPKGANFEVDAVMVID
>NZ_CP040431.1|WP_005410876.1|3753739_3755902_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MNPGPTAKVAAAPAAAVPDYVLQLERAAHYLPPEQLPLLRRAWEVGASAHAGQTRKSGEPYITHPVAVAQVLAELGLDVEALIAAILHDTIEDTPLTREALAAEFGEAVAELVDGVTKLDKLKFRDRQEAAAESFRKMLLAMSRDLRVIMIKLADRLHNMRTLGAQSREARGRIARETLEIYAPIAQRLGMSLVKSELQNLGFKALYPWRHAIIEKHIRSQPVVRREAMAQVEVQLSQRLAKEGIEHRLISRIKTPWSIYNKMRDENKSFDQVMDVFGFRLVVRSVPSCYHALGSVHATFKPLDGRFRDFIAIPKANGYQSLHTVLFGPYGSPIEVQIRTEEMDLIAERGVAAHWTYKFGGDSPNSAQSRAHAWIVELIDSQRAAGSSLEFLDNVKVDLFPDEVYLFTPKGKILALPRNSTALDFAYAVHTDVGNMAVASRVDKKLVPLRTKLVSGQSVEIITARSATPKPQWLEFVVTSKARTAIRHQLKQLEHEDAVQLGHRMLDRALEAMDSSLERLPKGRLDAFLAEHRFPRLEALLAEVALGNWMPTQAAQALMAYAELRGGPHSRHHSQEKILINGSERGVVTFAGCCQPIPGDEIMGYHTAGKGIVVHRMDCPNLAELRKSPERWVPIGWDTTVSGDYDTSLVVEVENGTGVLAQLAAAIAQSHSNIERVDYLDRDFNAAVLAFNIQVRDRNHLAEVMRRLRRLSVVQSVRRQ
>NZ_CP040431.1|WP_005410877.1|3756007_3756307_-|DNA-directed-RNA-polymerase-subunit-omega
MARITVEDCLEVVNNRFELVMMASKRARQLANGVQATLDNSETEDKPTVLALREIAARKIDNALIDEVEKAERERAEREALEWAAAEVVADEDMSKNDD
>NZ_CP040431.1|WP_005414359.1|3756417_3757083_-|guanylate-kinase
MSAASKPSDAVARGTLYIVAAPSGAGKSSIVNATLARDPQIALSISFTSRAMRPGEVNGQHYHFVSAERFEEMIAAGDFFEHAWVHGDWKGTARQSVEPQLAAGQDVLLEIDWQGAQQVRQLVPGTVTVFILPPSKQALQDRMRKRGQDSEAVIAQRLGAARDEMLHFNEFDYVIVNEVFDTAVDELCAIFTASRLRREAQKVRHAGLIQALLTPDPGATD
>NZ_CP040431.1|WP_143569567.1|3757374_3760443_+|formate-dehydrogenase-N-subunit-alpha
MPSMSRRQFLKVTGTTLVGSSLALMGFAPGIALAEVRHYKLTRATETRNTCTYCSVACGILMYSLGDGAKNAEPSIFHIEGDPDHPVNRGTLCPKGAGLADIIHSKSRLLYPEYRAPGSNEWKRLSWDDALDRIARLMKEDRDANFVQKNEAGQTVNRWLTTGMLAASATSNETAVLTHKVVRSLGMLAFDNQARVUHGPTVAGLAPTLGRGAMTNHWVDIKNADLILIMGGNAAEAHPCGFKWVTEAKAHNKARLIVVDPRFNRSAAVADVYAPIRTGTDIVFLGGLINYLLTEDRIQHEYVLNYTDMSFLVKDEFAFKDGLYSGYNEEKRSYDRSSWDYAYGDDGFVRSDPTLKDPRCVYNLLKQHYARYTVEMVERICGTPADSIRQIWDMIASTAGKDKAMTILYALGWTQHSIGAQNVRAGTMVQLLLGNIGVAGGGMNALRGHSNIQGLTDIGLMSDLLPGYLTLPKQDEQDYEAYIAKRTQKPLRANQMSFWQNYPKFHVSLMKSWWGDAATADNNWCFDYLPKLDKPYDMLQAYELMNEGKIHGYICQGFNPLASAPNKGKLISAFSKLKFMVSMDPLETETIAFWQNHGALNDVDPSTIQTEVFRLPTTSFAEENGAVVNSSRWLQWHWKGANPPGEARSDIEIMSELFHRIKAMYEKDGGAWWEPVRDLAWNYANPEVPTPEELAMEYNGKALADVFDPKDPTKLVRKAGEQLAAFGDLRDDGSTASGCWIYIGAWGPTGNMMARRDNSDPTGIGNTLGWAWAWPANRRVMYNRASCDVAGKPFDPRRTLLAWNGKNWGSVDVPDFKADEDPAGGMGPFIMNPEGIARFFAKAGMAEGPFPEHYEPFDTPLRSNPLSPGQALTLNNPAARVFASDRAQIGSPDEFPHVATTYRLTEHFHFWTKHGKLNAIIQPEQFVEIGAALADELGINNGSRVRVSSKRGHIEAVAMVTKRIKALQIDGRTVHQVGVPIHWGFLGAAKPGYIANTLTNAIGDGNSQTPESKCILVKVEKV
>NZ_CP040431.1|WP_099484781.1|3760453_3761371_+|formate-dehydrogenase-subunit-beta
MSLQSLDIIRRSATTTPSPEARGAHTGQVAKLIDVSKCIGCKACQVACMEWNDLRDEVGSCVGSYDNPPDLSEQSWTVMKFREYEDEKGKLEWLIRKEGCMHCSDPGCLKACPSPGAIIQYANGIVDFQEENCIGCGYCVTGCPFDVPRISKKDHKAYKCTLCSDRVAVGQEPACVKTCPTGAITFGSKQAMTEHAAGRVEDLKSRGYENAGLYDPQGVGGTHVMYVLQHVDKPELYADLPKDPRISPIVEVWKGVAKPLGVLAIAATAFAGFLHYIGIGRNTVNDEEEEEAEHEAKKIEEEQRP

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Crispr_ID: NZ_CP040431_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040431_8

3839480-3839588

Orphan

Consensus_repeat	Method
CAGTGCCAACCAAGGTTGGCACCTACCAGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040431_8

>merge|NZ_CP040431|8|3839480-3839588|CRISPRCasFinder
CAGTGCCAACCAAGGTTGGCACCTACCAGGGCAAAGACCAGCTGCTGTAGATCCACACCATGCGTGGATGCATGCGTCAGTGCCAACCAAGGTTGGCACCTACCAGGGC

>NZ_CP040431|8|6|3839480-3839588|CRISPRCasFinder
CAGTGCCAACCAAGGTTGGCACCTACCAGGGC	AAAGACCAGCTGCTGTAGATCCACACCATGCGTGGATGCATGCGT
CAGTGCCAACCAAGGTTGGCACCTACCAGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040431.1\|WP_099483929.1\|3835924_3836503_+\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP040431.1\|WP_154329596.1\|3836492_3837554_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_CP040431.1\|WP_099483936.1\|3851218_3852550_-\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|225844
NZ_CP040431.1\|WP_005410961.1\|3845505_3846864_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP040431.1\|WP_099483931.1\|3838546_3839452_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
NZ_CP040431.1\|WP_012481201.1\|3832069_3833656_+\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
NZ_CP040431.1\|WP_154329597.1\|3844024_3844705_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NZ_CP040431.1\|WP_005410960.1\|3844841_3845489_+\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
NZ_CP040431.1\|WP_099483935.1\|3849744_3850662_+\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	unknown	unknown	gnl\|CDD\|181542
NZ_CP040431.1\|WP_005410947.1\|3830633_3830885_+\|acetolactate-synthase	unknown	unknown	gnl\|CDD\|226486
NZ_CP040431.1\|WP_033835631.1\|3830981_3832073_+\|threonine-dehydratase	unknown	unknown	gnl\|CDD\|236339
NZ_CP040431.1\|WP_005414416.1\|3848385_3849684_-\|3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589
NZ_CP040431.1\|WP_012481199.1\|3828913_3830650_+\|acetolactate-synthase-2-catalytic-subunit	unknown	unknown	gnl\|CDD\|181601
NZ_CP040431.1\|WP_005414410.1\|3837655_3838429_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183716
NZ_CP040431.1\|WP_099483928.1\|3834506_3835925_+\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP040431.1\|WP_099483937.1\|3852530_3853646_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340846
NZ_CP040431.1\|WP_005410957.1\|3839610_3842772_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP040431.1\|WP_005410951.1\|3833666_3834446_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP040431.1\|WP_005410958.1\|3842776_3843907_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP040431.1\|WP_049460232.1\|3846951_3848169_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129987

Protein	Function_ID	Function_description	E-value
NZ_CP040431.1\|WP_099483929.1\|3835924_3836503_+\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	9.71518e-93
NZ_CP040431.1\|WP_154329596.1\|3836492_3837554_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP040431.1\|WP_099483936.1\|3851218_3852550_-\|O-antigen-ligase-family-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	2.28831e-19
NZ_CP040431.1\|WP_005410961.1\|3845505_3846864_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.66583e-106
NZ_CP040431.1\|WP_099483931.1\|3838546_3839452_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.09892e-94
NZ_CP040431.1\|WP_012481201.1\|3832069_3833656_+\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
NZ_CP040431.1\|WP_154329597.1\|3844024_3844705_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	5.58216e-27
NZ_CP040431.1\|WP_005410960.1\|3844841_3845489_+\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	1.35392e-64
NZ_CP040431.1\|WP_099483935.1\|3849744_3850662_+\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	gnl\|CDD\|181542	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase.	0
NZ_CP040431.1\|WP_005410947.1\|3830633_3830885_+\|acetolactate-synthase	gnl\|CDD\|226486	COG3978, COG3978, Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown].	1.63788e-22
NZ_CP040431.1\|WP_033835631.1\|3830981_3832073_+\|threonine-dehydratase	gnl\|CDD\|236339	PRK08813, PRK08813, threonine dehydratase; Provisional.	0
NZ_CP040431.1\|WP_005414416.1\|3848385_3849684_-\|3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	0
NZ_CP040431.1\|WP_012481199.1\|3828913_3830650_+\|acetolactate-synthase-2-catalytic-subunit	gnl\|CDD\|181601	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed.	0
NZ_CP040431.1\|WP_005414410.1\|3837655_3838429_-\|SDR-family-oxidoreductase	gnl\|CDD\|183716	PRK12744, PRK12744, SDR family oxidoreductase.	1.16492e-176
NZ_CP040431.1\|WP_099483928.1\|3834506_3835925_+\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP040431.1\|WP_099483937.1\|3852530_3853646_-\|glycosyltransferase	gnl\|CDD\|340846	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences. This family is most closely related to the GT4 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.	8.43458e-48
NZ_CP040431.1\|WP_005410957.1\|3839610_3842772_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP040431.1\|WP_005410951.1\|3833666_3834446_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	3.65828e-22
NZ_CP040431.1\|WP_005410958.1\|3842776_3843907_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.49891e-60
NZ_CP040431.1\|WP_049460232.1\|3846951_3848169_-\|hypothetical-protein	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.22011e-07

>NZ_CP040431.1|WP_099483931.1|3838546_3839452_+|LysR-family-transcriptional-regulator
MDRIDRFRIFTRVVECASFTRAADQLGLPRSTVSAAIAELEQRLGTRLLQRSTRRVSTTHDGDVFHARCLRLIAEVEDAESLFRQDDAQPVGLLKIDVPSRIGRRIIAPALPDFFARHPQVEVDLGMTDRAVNLIEDGCDAVLRVGQLGDSSLVARTLGQLDFVNVAAPAYLREYGVPQQPADLQQHRAVNYASPTTARVEAWEWQEGTQLRTLPMPGWVRVNSAEASIACCVAGLGLLQIPRYDVQAELQSGALVEVMPQHVAQPLPVTLLQPHRQHRAQRVQVFIEWLLPVLRSGLQLQ
>NZ_CP040431.1|WP_005414410.1|3837655_3838429_-|SDR-family-oxidoreductase
MTDHSLKGKTVLIAGGAKNLGGLIARDFASQGAKAIVIHYNSAATQADAEATVAAVQAAGSKAVALQGDLTSAAAMERLFADAVAAVGRPDIAINTVGKVLKKPLLEISEAEYDEMSAVNAKAAFFFLKEAGRHVNDGGRICTLVTSLLGAFTPFYSSYAGTKAPVEHFTRAASKEFGERGISVTAIGPGPMDTPFFYPAESADAQAYHKTAAALSAFTRTGLTDIADIVPWIRFLVTDGWWMTGQTILVNGGYTTK
>NZ_CP040431.1|WP_154329596.1|3836492_3837554_+|3-isopropylmalate-dehydrogenase
MHAEIVVLPGDGIGPEVAAAAVAVLKSVATRFNHTFTFSEHDIGGIAIDRHGEPLPASTLTACQAANAVLLGAVGGPKWSDPNAKVRPEQGLLAIRKALGLYANLRPVRTHEAALHASPIKAELLQGVDFVVVRELTGGIYFGDKTRDADSASDLCRYTVAEIERVLRSAFRLARQRRGKVTSVDKANVLETSRLWRDVAARIGREEFPDVALEHQLVDSMAMHLLAKPREYDVIVTENMFGDILTDEASMLAGSLGLLPSASLGEPGAVGIYEPIHGSAPDIAGKGIANPYATIFSAAMLLRHSLALETEAAAVEAAVHAVLDDGVFTTDLAANGQAVSTAAATDAVLAKLN
>NZ_CP040431.1|WP_099483929.1|3835924_3836503_+|3-isopropylmalate-dehydratase-small-subunit
MAGFRTLTSASVVLRQTNIDTDQIIPARFLSTTERAGLGRNAFNDWRWQADGSPVADFAFNQPHNAGRSILLAGRNFGCGSSREHAPWALTDLGLRAIVSSEIADIFRGNSLKNGLLPIVLDEADVQALMQRPDDALTIDVAARELRTPDGRVYSFPLDGFSQTCLLEGVDQLGYLLGRVPEIERYESEHAR
>NZ_CP040431.1|WP_099483928.1|3834506_3835925_+|3-isopropylmalate-dehydratase-large-subunit
MTSAPRTLYDKLWDAHVVVPETDSAPAVLYIDLHLIHEVTSPQAFTELRERGLSPRRPDRTKATMDHSTPTLPPAADGTLPYASAASEAQVATLARNCAEHGIELFDMASDNRGIVHVIAPEQGFTQPGMTIVCGDSHTSTHGAFGSLAFGIGTSEVGHVLATQCLLQRKAKTFAITVDGPLAPGVGAKDVVLHIIGVIGVNGGTGHVIEFRGSTIEAMDMEQRMTLCNMSIEAGARAGMVAPDQVTFDFVAATPRGPKGADFDAAVARWQQLRSDDGARFDSEVHIDAADIRPTLTWGTHPGTAIAVDAPIPAANDAAAQKGLDYMHFQAGKALAGTPVDVVFVGSCTNGRLSDMREVAQVLRGRRVADRVRMLVVPGSEIVKREAEAEGIHEIVRAAGAEWREPGCSMCIAMNGDLVAPGQLAVSTSNRNFEGRQGPGSRTLLASPMSAAWAAVNGHVADTRKLFAQEVA
>NZ_CP040431.1|WP_005410951.1|3833666_3834446_+|class-I-SAM-dependent-methyltransferase
MSAFDTFTPASAAGQQWNAQDYAIDAGFVPLLGGAVSRLLDPRAGERILDLGCGDGVLSTELALSGARIHGVDASPELVVAARARGVDAQVMDGHALSFDSEFDAVFSNAALHWMTTPDRVLEGVRRALRPGGRFVAEFGGHGNVATIIAAVQAARVAHGHGASTFQWYFPTADAYADRLRQHGFQVQLIECTPRPTALPTGVAGWLRVFAAPLLDDLPAEARATVREAATALLAELPRNAAGQPLADYVRLRVLARRR
>NZ_CP040431.1|WP_012481201.1|3832069_3833656_+|2-isopropylmalate-synthase
MTTIERITTPRIRIFDTTLRDGEQSPGCSMSPPQKLVMARALDELGVDIIETGFPASSQSDREAMALIGRELRRPSLSLAVLSRCLQADIETSARALEAAANPRLHVFLSTSPLHREHKLRMTREQVLESVRKHVSLARSYIDDVEFSAEDATRTELDYLIEVARVAIAAGATTINLPDTVGFTTPEEIRAMFQQVIAGVADVPNAANVIFSAHCHNDLGLAVANSLAAIEGGARQVECTVNGIGERAGNCSLEEIAMVLKVRQAFYEQDSSINTPRIVGTSQLLQRLVGMPVQRNKAIVGANAFAHESGIHQHGMLRHRGTYEIMRPEDVGWEDSQMVLGRHSGRAAVEARLRALGFWLDEDELKLVFEQFKGLCEQQRVVTDADLQTLMQGGSNAQGYRLASMTISDVGSRANALVELSDPDGNRVAETAQGDGPVDALFGALSAATGVQLMLDSYHVHSVGIGADARGEANLSVRHEGVEYDGTGTSKDIIEASALAWLDVANRLLRQRQATAHNSTDVPTPATA
>NZ_CP040431.1|WP_033835631.1|3830981_3832073_+|threonine-dehydratase
MPAADTSQESDVGDVSVADVLAAQARLRRFLPPTPLHHAERFGTWLKLENLQRTGSYKVRGALNALLAGRERGDTRPVICASAGNHAQGVAWAAYRLDVPAITVMPHGAPATKIAGVAHWGATVRQHGNSYDEAYAFAVELAQRHGYRFLSAFDDADVIAGQGTVGIELAAHAPDVVIVPIGGGGLASGVALALKSQGVRVVGAQVEGVDSMARAIRGDVREIAPVASLADGVRVKIPGFLTRRLCTSLLDDVVIVREAELRETLVRLALEEHIIAEGAGALALAAGRRVAGRRKCAVVSGGNIDAGVLAGLLTDIRPRPPRKPRRRRSETPRSPAKASAPPSPMPSPSHLQAATPAVEEISL
>NZ_CP040431.1|WP_005410947.1|3830633_3830885_+|acetolactate-synthase
MQYRLDLVLHPAEGALLRVIGMAERRGFAPRAISGAPVAADDGRWHLQLVVDGQRPAETLCRQIEKIYDCVSVQVTAVEGVSP
>NZ_CP040431.1|WP_012481199.1|3828913_3830650_+|acetolactate-synthase-2-catalytic-subunit
MNSSTHRSAPPNGARWLTQALEAEGVRTLFGYPGGTIMPFYDALVDSSLKHILVRHEQGAALAANGFARASNQVGVCVATSGPGASNLVTGIADAMLDSVPMVCITGQVGTPLLGTDAFQELDVFGLTMPIVKHSWLVRSVDDLPRVVADAFRIAREGRPGPVLIDLPKDVQLADASHLPAHVPSSVEPPPAPAEAAIAEAIAALAAAEKPVVYAGGGIALGDAVQDLRDFVEASAIPTVMTLRGLGALPAHHPQSLGMLGMHGTRAANMAVQESDLLLVLGARFDDRATGKLAEFAPFARVVHIDADAYEISKLRSADVAVPGNVGHAIRALRAAFPSPKAHQDAWRKRCAQHRDRFAARYDAPGQHIYAPALLKRLSELAPADAVIACDVGQHQMWVAQHCRFNHPRNHLTSGALGTMGFGLPAAMGAQFACPERTVVLVSGDGSFMMNVQELATIARCRLPVKIVLLDNSSLGMVRQWQELFFAERYSEIDLSDNPDFVALSQVFGIAATRIDNRDDVEGGLAALLAEPGPALLHVAIDARANVWPLVPPNTANSTMLESNPAHARQETPNAIPA
>NZ_CP040431.1|WP_005410957.1|3839610_3842772_-|efflux-RND-transporter-permease-subunit
MRRFNLSEWALANRPLVLFAMLAFALIGAWSYKHLGQSEDPPFTFKAMVVRTLWPGATAEQVSRQVTEPIEKALMNTGEYEFIRSYSRPGESQVIFMARDSLRSRQIPDLWYQVRKRVGDIRATLPREIVGPFFNDEFGDTYGNIYALTGKGFDYAVMRDYADRIQLELQRVPDVGKIDLVGLQDEKVWIELSNTRLATLGVSMQQVQQALADQNAVTGTSFFETATDRVQLRVTGQFNDIEAIRQFPIRAGDRTVHLGDIAEVKRGFADPASPKMRFMGEEAIGLAVAMKDGGDILKLGANLDAEFERLQKTLPAGMQLRKVSDQPQSVEESVGEFVQVLTEAVVIVLLVSFFSLGLRTGLVVGVTIPLVLAMTFFVMHYFDIGLHKISLGALVLALGLLVDDAIIAVEMMATKMEQGYDRLRAASFAWESTAFPMLTGTLITAAGFLPIATAASSTGEYTRSLFQVVTIALVVSWIAAVLFIPYLGDKMLPDLFNPQPPKPGSVSARWHAKRQQWADRYPALANLIAPPQHGHDHDPYQRPFYRSFRRFLDGCLRHRWWVIAATIALFVFSLMMFRFVPQQFFPDSTRPELMVDIELAEGASLRSTQAQAEKLEKLLSSREGIANYVSYVGTGSPRFYLPLDQQLPATNFAQFVVLAKDIKARESTRDWLLHEVIPKFPDVQMRVTRLENGPPVGYPVQMRISGEHIEKVQAIARQVEAKVRENPHVMNVNLDWSEPSKVVRLVIDQERARALGVSSAQVSQFLSSSLAGQSVSVYREGNRQIEMLLRGPADERNQLELLSSLSMPTANGGSITLSQVATMEYGFEDGIIWHRNRLPTVTVRADISDGMQPLDVVHQILPTLDGIRAELPNGYLLETGGTVEDSARGQNSIKAGMPLFLVVVATLLMLQLRSFSRAAMVLVTAPLGIIGATLFLLLFRAPFGFVALLGTIALAGMIMRNSVILIDQIQQDIDAGHDRWHSIIDATVRRFRPIVLTALAAVLAMIPLSRSAFYGSMAISIMGGLIVGTVLTLVFLPALYAAWFRVKPDESGA
>NZ_CP040431.1|WP_005410958.1|3842776_3843907_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKIVRWMGGMVWVAALAACSGQEQAPQAAVPVLVVHPGEQAGQAPAAFPGTVRARQESPLSFRVGGNLVKRHVDAGQRVKKGDVLAELDVADFALQARASQAQLAAAEADLVRARDDLKRYQVLADQQLVSRSQLDQQSAAFKAAQGQANAARANLDVLRNQADYAQLRAPADGVIASREAEAGQVVSAGQTIFNLAADGGREVLIDLPEATIRDYAVGQPVEVELWNRPGQRLPGTIREIAAAADPQARTYATRVSLAADALADVELGQSARVYSSAGRHGTLQLPLGALQRGANGAASVWVVDPANSTLKAASVTTGAFGSETVPVLSGVNAGDWVVAAGGHLLRAGQPVIAVDRQNRPVLKPAAPAAAAKAKE
>NZ_CP040431.1|WP_154329597.1|3844024_3844705_+|TetR-family-transcriptional-regulator
MSSSTSRKPSAKPAAKAAGPGRPKDLGKRAAILEAAKVLFIEQGYTGVSMDAIAAQAGVSKLTVYSHFGDKETLFSEAVQSKCIEMLPDALFVVDADGPLRDQLIGIGLAFFELITSDAAISIQRMMMAPETDERLRELFWKAGPERTCEALADFLRARAERGELEITDYSLAGEQFLTLVKGEVHMHMMCGMPLSPVECDPLAHVTASIDFFLRAYAPRGAGTAE
>NZ_CP040431.1|WP_005410960.1|3844841_3845489_+|protein-L-isoaspartate-O-methyltransferase
MTIDYAHARELMVEQQIRPWDVLDIKVLDVLARLPREAFVADAHRALAYADVELPIGHGQKMMKPVIEGRTLQALDLQPGDEVLEIGTGSGFLSACIGALARDVLSLEIDPELATAARARLDASGLGTNVRVEVADALSWQTERRFDVICVTGAVDVVPSQFASWLRPGGRLFVIHGRSPAMEALLVKADGSTESLFETDIDYLRGAAPAPQFHL
>NZ_CP040431.1|WP_005410961.1|3845505_3846864_+|TolC-family-outer-membrane-protein
MIRRSLAVALATALLPLSAHAADLLQVYEMARNGDPQLSAAESTRLVDKEGAVQARAALLPQINGQATLNRTRSEPNADINSGSFTNKRRNYTIDGSQTLFNWTQINNLRSQRELSKAADFTLESANDSLIVRTSAAYFNVLVAIESLNAAQTNEAAAKKQFDFADKRLEVGLAPITDVHEARAQYDQARANTIVAQNTLADNYQALTELTGQPVVNLRGLPADFRPEVPANRGNIDELVHQATTQNPALKAQELKVSAAEAGVQAARGGHYPTLSLGGSWGKTATWGDSTGSGSLSPDARTNSIGLTLNVPIFAGGATQSGVRQALAQRDIAQDGYEQQKRALDRNTRNAYQTLVQGISEVEARRLAVVSAQSAYDASQVGLEVGTRTVLDVIQNQRILFSAQLDYAQARYTFLQNRLLLSQSLGALDVAELQDVNRLLTQDAGNPATTTH
>NZ_CP040431.1|WP_049460232.1|3846951_3848169_-|hypothetical-protein
MDSDSSPGIDEPGYGDRLVVVALTLLLGGGVVALVGQHTAAQAGPAIVLSLLLAALGTGPLLYCLHVPNQQRPAADGLHGVVRDCWGGVPAVLLGGALLLELVVTAAGVAQSVANHLHVLLAGCGIEASNGMPGQLMAAASLLLLAGVGLLRPHRVVLVACVLLTVKIGAGLLLLVLAARHVHYANWIPWLPPATAPYRFGIGGVLAASVPLYGVFATVGLALGFPGIGRQARARPPLLPACVLLAMVLLIVLAALQAGLVEFPALASTRPLSVALQHHPQLYWVMPLLPLAGVAGSVALILVLLMLAAQVAMQLWPTAGDRSLEFRERLVPVAVVLPAALLALWAPMGSLPVLPGPATLLVMGAVCVAVLRGRAQRSRALPVLAPVAIALCLLAAVERMRVWPG
>NZ_CP040431.1|WP_005414416.1|3848385_3849684_-|3-deoxy-D-manno-octulosonic-acid-transferase
MRKDPVEWILRGLYSVVLYILLPITVYHLVWRGFRVREYFRRWDERYASYPQPTGQPRVWLHAVSVGEVNAAAPLVNALRKERPDIRWVITTITPTGSERVRALWGDALDHVYLPYDVPGSVNRFLGHFQPSLALILETELWPNMLFGCRDRGIPVYILNARLSARSLRGYRLLAALIRRALRTVTCVAAQSQDDAERFVQLGAAPEQVQALGNLKFDITTPDVQGFVEQFHARVPARRPVWIAASTHDGEEQAVIDLHRRLRRQHPDLLLLWAPRHPERFPKVEALAREQGWNVATRRAKQWPEVGTDVFVIDTLGELMPFYACAQVAFVGGSLQPIGGHNLLEPAAMGTAAVTGPHLHNFSEISRRMREAGALLIGEDVQAVGELLQHLLEDPQAREDMARAGCTLISNGRGALQRTLALVGPHLPPPCR
>NZ_CP040431.1|WP_099483935.1|3849744_3850662_+|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase
MSDATTAVRPSLRDPRNWPMFAAMLGAFAIARLPWMLQRALGRGVGWITWRLLGSRRRAAEVNLQLCFPEKDEAWRQRLVRDSFDALGVGVFECIRAWWGSIDSIRPQVQIEGLEHLRQMQAEGRGVLLVSGHFMTLEMCGRLLCDYVDLSGMYRKHKNPVYEWAVKFGRLRYAKAMFANEDIRTTVRHLKKGGFLWYAPDQDMRGKDTVFVPFFGHTASTITATHQLARMTGCAVIPYFHRREGGKYFLKIGAPLENFPSDDVEADTTRVNQAIEEMVREAPDQYLWIHRRFKRQPGGRSDFYK
>NZ_CP040431.1|WP_099483936.1|3851218_3852550_-|O-antigen-ligase-family-protein
MPTSPADPAVIVRDDRAGRWAPWWVLAYVAMWPLPGIAETVLGLGALYAAVRMVTRRLQRRPHLLSTAAWALTSILFLGYWLPQAFSAFDAIDPAASWTKAAAGLRYLPFMWLVAIAVATPERRRLTFAGLALITGAWTLDALVQAVAGTSPWFWSLEHLKLAVSGHALCPADEAALADRLSGALGPCNLKFGQVLASLSPFLLLPAARRFGNTGWLLAAAALGSVLLLAGSRASWITFALVLAYSGVRQFGWKRLAALALVAVLGAGALTVSVPQLRERFARTAMALDGGERGVDEALSGRARIWEAAACMIEEHPINGVGARGFRDAYPACVAEEGPAVWGNAPALHAHQIVLEILAETGVIGLLLWLAAVAQAWRAWRYAPAMARERARPAMLALAVTVFPLNTHLAFYSAFWGGLTVLLAALFAGSLLARDADDTPTAV
>NZ_CP040431.1|WP_099483937.1|3852530_3853646_-|glycosyltransferase
MRRLTVVQLLPALHSGGVERSTLEIAAALVAAGHRALVVSAGGRLVQPLLDSGAEHLTLDIGRKSLLTLRHLPTLRRLFAEVGADIVHARSRLPAWLGLYAIRALPAAQRPHWVTTVHGLNSPSRYSAVMTSGERVICVSNTVRDYVQRHYPTVPEQALQVIPRGVDVAQFPRVARADRRPRMALAAEYPRLAQVEGPLLLLPGRGTRLKGHAYALQLLADMRAAGVPAQLWMLGTDEPGREAYVADLRRQAAALGVAEAVHISTPTARIAQAYAASDLVLQLSDKPEAFGRTVVEALSVGRPVLGWDHGGVGELLRQLQPAGAVPLGDARALGERALALLAQPPSLPARIPFTLQAMQRDTLRLYADLAG

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Crispr_ID: NZ_CP040431_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040431_9

3940119-3940249

Orphan

Consensus_repeat	Method
GTGCCGACCGAGGTCGGCACCTACCAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040431_9

>merge|NZ_CP040431|9|3940119-3940249|CRISPRCasFinder
GTGCCGACCGAGGTCGGCACCTACCAGAGCGGATCATGGCGTCGATTGGCCCTGTGCCGACCAAGGTCGGCACCTACCAGCAGGTCATGGCAGCGAGAAGCATCGTGTCGGCCAAGGTCGGCGCCTACCAG

>NZ_CP040431|9|7|3940119-3940249|CRISPRCasFinder
GTGCCGACCGAGGTCGGCACCTACCAG	AGCGGATCATGGCGTCGATTGGCCCT
GTGCCGACCAAGGTCGGCACCTACCAG	CAGGTCATGGCAGCGAGAAGCATC
GTGTCGGCCAAGGTCGGCGCCTACCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040431.1\|WP_012481273.1\|3947962_3949252_-\|sugar-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NZ_CP040431.1\|WP_154329600.1\|3940276_3943306_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|238654
NZ_CP040431.1\|WP_060381202.1\|3949630_3950650_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|237092
NZ_CP040431.1\|WP_154329602.1\|3950793_3953502_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP040431.1\|WP_044570875.1\|3937841_3938177_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_099484084.1\|3943604_3944672_-\|DUF1624-domain-containing-protein	unknown	unknown	gnl\|CDD\|226749
NZ_CP040431.1\|WP_138970171.1\|3929526_3930414_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_099484086.1\|3939634_3940069_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_024957020.1\|3930470_3930878_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP040431.1\|WP_043034003.1\|3956076_3956469_-\|membrane-protein	unknown	unknown	gnl\|CDD\|227939
NZ_CP040431.1\|WP_099484755.1\|3933218_3934439_+\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NZ_CP040431.1\|WP_044570878.1\|3938180_3939218_-\|peptidase	unknown	unknown	gnl\|CDD\|367567
NZ_CP040431.1\|WP_099484756.1\|3935641_3936280_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_049460418.1\|3936276_3937761_+\|hemolysin	unknown	unknown	gnl\|CDD\|238287
NZ_CP040431.1\|WP_154329601.1\|3946855_3947923_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380487
NZ_CP040431.1\|WP_154329603.1\|3953613_3955971_+\|family-20-glycosylhydrolase	unknown	unknown	gnl\|CDD\|119333
NZ_CP040431.1\|WP_005414488.1\|3944671_3945820_-\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|224733
NZ_CP040431.1\|WP_005411044.1\|3945819_3946848_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225132
NZ_CP040431.1\|WP_005411035.1\|3934518_3934953_-\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787
NZ_CP040431.1\|WP_154329599.1\|3931028_3933014_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|183236

Protein	Function_ID	Function_description	E-value
NZ_CP040431.1\|WP_012481273.1\|3947962_3949252_-\|sugar-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.28231e-120
NZ_CP040431.1\|WP_154329600.1\|3940276_3943306_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|238654	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.	2.6468e-37
NZ_CP040431.1\|WP_060381202.1\|3949630_3950650_+\|ROK-family-protein	gnl\|CDD\|237092	PRK12408, PRK12408, glucokinase; Provisional.	0
NZ_CP040431.1\|WP_154329602.1\|3950793_3953502_+\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	3.60675e-171
NZ_CP040431.1\|WP_099484084.1\|3943604_3944672_-\|DUF1624-domain-containing-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	8.93641e-50
NZ_CP040431.1\|WP_024957020.1\|3930470_3930878_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	8.8355e-33
NZ_CP040431.1\|WP_043034003.1\|3956076_3956469_-\|membrane-protein	gnl\|CDD\|227939	COG5652, COG5652, Predicted integral membrane protein [Function unknown].	0.00134426
NZ_CP040431.1\|WP_044570878.1\|3938180_3939218_-\|peptidase	gnl\|CDD\|367567	pfam03572, Peptidase_S41, Peptidase family S41.	1.12549e-10
NZ_CP040431.1\|WP_099484755.1\|3933218_3934439_+\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NZ_CP040431.1\|WP_049460418.1\|3936276_3937761_+\|hemolysin	gnl\|CDD\|238287	cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. .	1.69839e-11
NZ_CP040431.1\|WP_154329601.1\|3946855_3947923_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380487	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	9.70776e-119
NZ_CP040431.1\|WP_154329603.1\|3953613_3955971_+\|family-20-glycosylhydrolase	gnl\|CDD\|119333	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0
NZ_CP040431.1\|WP_005414488.1\|3944671_3945820_-\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|224733	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism].	3.55671e-164
NZ_CP040431.1\|WP_005411044.1\|3945819_3946848_-\|SIS-domain-containing-protein	gnl\|CDD\|225132	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane].	1.67347e-114
NZ_CP040431.1\|WP_005411035.1\|3934518_3934953_-\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	1.24916e-09
NZ_CP040431.1\|WP_154329599.1\|3931028_3933014_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	6.50537e-73

>NZ_CP040431.1|WP_099484086.1|3939634_3940069_+|hypothetical-protein
MTTLYPTYPRLHVLLGAAMPGLQLSNAVAEALEDALTEAHEHAPPPAFFARLHGIAQSHAADGQVWRERQLSDVRGRELTEATRCLAALSACGGVLLAAQSARETDDAQAQCPPQVEECLLQAVVVLADHASALVEADACAPLL
>NZ_CP040431.1|WP_044570878.1|3938180_3939218_-|peptidase
MQVRKGVRRIGALMLMLLATGAMADTPGAVEVPSPEAQAEILNLLERQALYRDRVDWAATRVRLQSAQGDPAQRLAVLREAIALSTGSHGVWTTTQRQSESLARAQQAGAAAVDRAKAADAVDMRIGWVVIEGYASTPGATPQEKFRQDIQRAARWQQVIRSKDDGARCGWIVDLRDNSGGNMWPMLLGMAPLLRTSVVNNEDVGSFETAQGPERWTLTATAVQRAGKSVLDFGQSGYVLRQPGAPVAVLFGPRTGSSGEASVLAWRGRPQTRSFGQPTAGVSTGNVVQTLADGSRLLLTTTVMRDRNDRGDGLKIEPDQRIEGDAATLAAAQAWLLAQPACQAR
>NZ_CP040431.1|WP_044570875.1|3937841_3938177_-|hypothetical-protein
MILIGQQERVVVVGPTEAHHCLRCQAETEFAPRLRYRMARIDLLFGFTYQRRYELACTRCEHGWVLDTETMDQQLGGVPIPWRHRFGLPLMLVVVVGLAVAGWMWRNLYSS
>NZ_CP040431.1|WP_049460418.1|3936276_3937761_+|hemolysin
MRPLTNAALANAAYSPPSHPAPGDKESLRVDGEDFEVLGRRDAVSGYQGVVYRNIKTNEIIIAHRGTEFDRQAILDGGVDAAMVSARVNAQIDDALVLTKQAIKQAEENGYGPVYVTGHSLGGALAQITAYHYNLPGDAFNPYGAAGLAYRLPEGQPANAAPFTNHVMAGDLVSAAGPHYGKVEMYALPKELGVLRDAEQGQRIASLVSLGMKSGHVMSAAVAVQLGDSHRMVHFIDRMTDKGPVQSVLDDPGARITDAEDLRRIAEYRKDIHQLRLGATVLVGGGPGLLRDGVNYLLGTGEAGAYARREAEAVQHAESALKAGERPVQEATEKGSPSLSNPGFAPKSPLQESIESTLDKAGLDPRKEGHPDHALYRQIRDGVSAVDARHGRGFDETSERVTAGLLATAKRSGLERVDHVVLGNPPSDGSGPRMFVVQGALDNPAHLRASIAVSEAVNTPVDQSLAKVEQISQAQQVAQQEQTQEQTRTAMRMG
>NZ_CP040431.1|WP_099484756.1|3935641_3936280_+|hypothetical-protein
MLKPSPPLTHVALIALITLAISGCNKERSYPVYRENPAPKDALPIVIRVHDAPVELTLPKVFVSYEIDPLCLPPINNYEGVQYAPQRHSVEFPVQRVSATEFSSTVFEDGMAVADYYGRGPCEWKPSIIRASFPVISEGREGFISVAVHHLELKKLLTSISYADSQMTLQTKSSTPGWVRTQSQYSYNRLSDIEKQKYFAIEISSPSKGIVP
>NZ_CP040431.1|WP_005411035.1|3934518_3934953_-|SseB-family-protein
MDHDTPFEPLNDLEVRLLQAQDGTLTASQFLDGLLTSTAFVLLDKAIGEDGAWDESISPLVLTSESGEPMFAVFTAPERAGLWHEQLPQFAHAMPIAVHALLAGIGDGVGLVLNPGLDVGMEMIPDAVAQLKQRAAAITRGMAH
>NZ_CP040431.1|WP_099484755.1|3933218_3934439_+|multifunctional-CCA-addition/repair-protein
MKIYLVGGAVRDRLLQRPAGDHDWVVVGATPAQMEAQGYTAVGRDFPVFLHPKTGEEYALARTERKSGRGYRGFVVDADPGVTLEEDLQRRDFTINAIACDEDSGALVDPYGGVRDIEQRVLRHVGPAFVEDPLRVLRAARFMARFAPLGFTVAPETMDLMREIAASGELDALVPERVWQELRKALVSERPSAFLRTLHDAHALGPILPELEALYGVPQRAEFHPEVDTGIHQEMVSDMAAKLAPGDDLVGFAALTHDLGKGLTPPEEWPRHIMHEQRGIQPLKALCARLKIPAEHQQLAEAVCREHLNVHRIDELRDATVLELLGRCDALRRPERVARIALCCEADKRGRLGFEDADYPQGETLKRLHQAALSVQARDLDTTHLKGPAIGEALAKARVKAIAAAR
>NZ_CP040431.1|WP_154329599.1|3931028_3933014_+|transglycosylase-SLT-domain-containing-protein
MLGAMTRRSSTALSLLPLATSLLIGCANAQSLDTQNAQLKAAIAAAERGQFDPGQAAALSRHPAYGWLEYANLRRNIDTVDTAQAQAFLKRYDGQAVANTFRSVWLPSVARRQDWPTLLANWAPTDNAGLRCAQLTARQVTGKVDPQWISEAQDLWRKNGKSLPDGCDAVFAVLQAQGGLSDALRWERIDAAADAQQPAVMRSAARGLPATDLALANNYAAFVDKPNASALNWPRNERSRRIATDGLAKLAKADPAATEQQLPQYAQALGLSAEQQGQVLYQIALWTVASYLPDSARRLNAVPESAYDERLHEWRVREAMSRGDWPAALTAIRKMSSKQRSDPRWRYFEGRMLEKTGQSQQAQPLFREAARAPTFHGFLAADKLQQGYTLCPWKPNDSAQAQAVIARDPAIQRAMALYQIDRTGWAVAEWNSALSRFDDTQRRLAVRVAQDNGWFDRAVFALGKQPQEQRLYDLRFPLHHDATIRRESARNAIDPAWVAAEIRAESTFTPRARSPANAMGLMQVLPATGAGVAKSIGLTGYGGADSLYDPDTNIAIGTAYLRQLMNKYDGLPYVTIAAYNAGPTPTARWQSQRPGFDPDLWIETISYKETREYVARVLAFSVIYDWRLNGDALPLSDRLMGRLVDKRKNFSCAANAEQGGD
>NZ_CP040431.1|WP_024957020.1|3930470_3930878_-|biopolymer-transporter-ExbD
MAFSSAGRSGPLADINVTPLVDVMLVLLIIFIVTAPIVARPIAVQLPQATDRTIDRPEPPPPIELSLDAGNQLSWNGQPMAIGDLQVRLQAQVGEHAGNLPELRIATDPAAEYEGMARILAAAEATGMERIAFVR
>NZ_CP040431.1|WP_138970171.1|3929526_3930414_+|hypothetical-protein
MKTITVMIHVAIVTALLLSPASESRAGGLIECNNCASPKDAALMSGSGLAVVMDFEKARLSAFEVEYDREIRKWRALSTPVPAQIQMAFLRILDATSAFRASPEEAHAMAGGGSVVVLHPDNPGNTNGVRFPESYKSSNTFDIVASATLRTRLGQYLATELAGANTGSPTWNSIALSIQQAALNWAGLKGGGSIAIMITWRDGSKTLYRVTPDNVAEAKYQKGESRDSTGNKVPDESIADPISAPSYAGQYYFGQHRDLDNWVRSAQMYGVPVQRGSSSRISCSWDGRTVYCQQY
>NZ_CP040431.1|WP_154329600.1|3940276_3943306_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MYRAVPRAFRPRRLAVSVLQALAVPSLLLTTASVAWAGCNSPAPTAGQTVTCDTNAPNPQATPVTANGAAGITVNVAAGAQLQQSGGGSAIALVGAGGHLLSNQGAISSVGGVTVQLGGGSRVDNTGSISTGNNTALQFVGAGDSVLVNRGAISGRTGVQFDAGNDRLEMQSGSISGGVLQGDGNDVLLLSNGTIDSVDQGGGDDQMTVTGGAVTGVVAQGSGRDDFIMSGGTIGALQQGDNIDTFRMSGGRIIGAFEDGDQAWMTAGRIGRVNMKLDKNLWDQSGGTVDGNVVTGFDTDTIIISGTAYIGGNISVSGGNDSVTITDGTVRGQVLLSTGSDTFNWSGGGIVYGAIDMGTDNDVANLSSLNQGNLGAVPLFDGGSGIDQLNFNNVKTTGVGRFQNWEAISLANSTELTFDGDLVLGDSSTGTGTLTVDDTSTVYAGSGGHAIRPFNSGALVEMVNAGRIDLTGTGAGDVFTVRGNYRGDGGGLYLRTVLGADNSTSDRLVIDGGSATGTTGIGVLNAGGSGAATLADGILVVQALNGGRTAPGAFSLFAPVAAGAYEYFLFKGGVSAGTRENWYLRSTLVAGPAPAPNGSGINGVPPPPTPPVAPPPPITPAPPPPPEGSTDPDLTAGETAPPPPPPEPAPVAPPSDPAVPDVPVAGGALPGTGTPPTPGARPAEGAVVPLYRVETATYAVVPPLLRETTLASLGTFHERQGEQRLLYNRGAFRTAWGRLVGQSSEIHWKGDAQPGFDGDVMGLQAGLDVWAAASDNHRNQIGVFVGRTRAQGKTTGLALGWENVQVGQNRLDDKHVGLYWTFTDSSGGYIDAVAMQSRYDGRVRSSRGLGFGIKGDGTSVSVEAGKPLLHFGQSAWWLEPQVQVIWQRTSLDDRRDEVSSVRFDNDNAWTGRIGLRLAGDYQLADNGWQPYFKLNYWHGRSGEDRVGFDNDTIINSQRSRALEAGVGVVGRFNRTISAYAVADYTRELGGDRNEKRRIIEGNIGLRADW
>NZ_CP040431.1|WP_099484084.1|3943604_3944672_-|DUF1624-domain-containing-protein
MNSSPPRRLGSIDALRGITVAAMLLVNNPGDWSAVFAPLRHSEWHGCTPTDLVFPFFLFLVGVSMAFSVAPRAQDAAARPALARGVLERALRILVAGALLHLLIWWALDTHHFRIWGVLQRIAVCAALVGVLAVYARPRVQVGALIALLVGYTVLLLGIGDLAPWTNPASRLDTALFAPWIYQWHADTGLGHDPEGLLSTLGALASTVLGLLAGGLLRNGRSAALAGLGVATAVLGLLLAVVLPLNKQLWTPSYVLWTGGLAALALWLGHVLIDQKGWPALGRRFGVNAITAYLGASVMSVVLMATGIWGWIWQQLATAMPQALELASMLQALVFVALWWGVAWWLDKRKIYLKI
>NZ_CP040431.1|WP_005414488.1|3944671_3945820_-|N-acetylglucosamine-6-phosphate-deacetylase
MATVLRNARILAGDDFRDDLALVIENGRISALLPDAAPQLGHAAEQVDLGGGWLLPGFIDVQVNGGGGALFNNTPDVAALRTIAQAHRRFGTTAMLPTLISDDVAVMREAIAAMREAITQGVPGVIGIHLEGPYIAPARKGTHDASKFRVPDEEEIALAASLDNGVTVLTLAPERVPLETIRALVERGVIVAAGHTAGTYEAIRAGLDAGVRGFTHLYNAMSPLQGREPGAVGAALEDRDSWIGIIVDGVHVHPASLRVALAAKPRGRLLLVTDAMPPVGADDPSYVLYGETITAVDGVVRNAAGSLAGSALDMATAVRNTVQLLGQPLAEAARMASTYPAQFLNVDDRLGHIAEGYQADLVLLDDALQVRGTWIAGQYEAA
>NZ_CP040431.1|WP_005411044.1|3945819_3946848_-|SIS-domain-containing-protein
MSLSDPTSTLMFAEAAEAADVVARQFSRNHATMETLAASLRAAPPPFVVTCARGSSDHAATYGKYLLETQLGLVVASASPSVGSVYAAPLQLRGALFIVISQSGKSPDLLRNAEAAKAAGARVIALVNVEDSPLAQLADTVIPLHAGAEKSVAATKSYLASLAALLQLAAYWKQDSSLRAALDLLPDALREAWQCDWSAVTEGLVEATNLFVLGRGLGLGAAQEAALKFKETCSLHAEAYSSAEVKHGPMALVDRGFPVLAFAQPDETGAGTRAVVEEFTARGAQVWMAGAGGNLPVAAAPHPLCAPLLTVQSFYRAINALALRRGFNPDLPPHLNKVTETV
>NZ_CP040431.1|WP_154329601.1|3946855_3947923_-|LacI-family-DNA-binding-transcriptional-regulator
MRRATIKDVAEKAKVSLKTVSRVINNEPSVMQATRARVLRAIAELDYEPDPSARNLRSGTTFVIGLVYDNPNPYHIIGVQNGVLAACRETGFGLQIHPCDSSSPLLADELADWVQRSRLAGLVLTAPMSERHDLIQALTARGIKLVRIIAATEDPADGACVFVDDREAAYEITEHLIQLGHQRIGFLWGGSSHRSSGERYAGYEAALKDYGMTVDKHLVVQGDYTFDDGFRGARRLLALREPPTAIFGSNDEIAAGVLAAAKSAGMNVPYDLSIAGFEDSPFSRQSWPPLTTAKQATEDIARHAARLLIAQLRSDAYDDAPAPLHNQGFVPQLVVRGSTAPMRPAGARPLPSDPA
>NZ_CP040431.1|WP_012481273.1|3947962_3949252_-|sugar-MFS-transporter
MSAVSAASVRPNVATSIAIVGVLFFLIGFFTWLNGPLITFVKLAFELSEVGAFLVLMVFYLSYFFLALPSSWILRRTGMKKGLSLSLLVMAGGAALFGEFATQRWYPGALGGLFVIGSGLALLQTAINPYISILGPIETAARRIALMGICNKIAGMLAPVLIGTVVLHGIGDLSASVAAADEATKAQLLNEFAAKIHAPYLAMAGLLVLLAVAVLFSPLPEIKSSEANATPVAAGAAERRSIFQFPHLWLGVLCLFVYVGVEVMAGDAIGTYGHGFDLPLDQTKMFTSLTLGAMLVGYVVGLLLIPKVVSQSRYLTISAVLGVVFCLGAWATHGYVSVAFVALLGFANAMMWPAIFPLAIRGLGRFTETGSALLVMGIAGGAIIPQLFAVLKQHIDFQLVFVLLMVPCYLYILFYSVIGHRAGLPQDKA
>NZ_CP040431.1|WP_060381202.1|3949630_3950650_+|ROK-family-protein
MTASHPAPAHVLSRIAPSFLAADVGGTHVRVARVQASGDAAHPVQVLEYRKYRNADHAGLSAILSDFLGEGPRPTHCVVASAGYAREDGTVITANLPWPLSARQVEADVGLQRVFIVNDFEAVAYAAAQVDASGVLHLCGPETAARGPTLVVGPGTGLGAALWIPTAHGPVVLPTEAGQPTLAASTELEMAIVRHMQRDRAHVSIEHAISGPGLMNLYRAVCALQGQAPTLASPDAVTAAAVADSDAHARQALDVFCGLLGSTIGDMALFYGAHGGVYLAGGILPQIREYLHASTFVERYLQKGPMGEALARIPVKVVEHGQLGVVGAASWYLQQQSAA
>NZ_CP040431.1|WP_154329602.1|3950793_3953502_+|TonB-dependent-receptor
MNTRKTLLSAAIVSCIAFSAHAQQAAQTATDLDTVQVTGIRGSMEKSLDTKREANARVEVVTAEDVGKLPAHNVADTLQRLPGVNISSSSADEGGFDEADRVSLRGTSPSLTQTLINGHTVGTADWFVLSQGNNVGRSVSYSLLPSELVRSVEVNKSSQAKLQDGGTTGTVNILTRKPLEFSKQLTAEGSIGMVRSDQAKSNDPQLSALFNYKNDEGNFGVMVQAFSQKRELRREAQEIPGGFFQIDPNGTVAKSNPDLAGVYAPGLLGSTLFEQTRERKGGLVSLQFKPLDNLTLGLEGFSSELKANNYNRNFMLWGGRILNDRTVEDANGNKILIPGQAPNPGYVIKDGVLSNATFAGQADRDYAVYDMIYRESKAKTNYITFDADWQISDNLGMKFQAGSTKGTGETPRQYIAEVNLARGGGATWATHGNGSPIDWNVGGNIGPSGVTDFGTWGNQQVTAIDKEKWATLDFNQYFADAGVLNSIDFGARFGDHNREAKSPEGATPGAIWNALKNGATANFPGGFANGIGGSFPRDLWYFTPGALKEAVTNNSTWLSGNDGPTGRHNYGAEWKVSEKNFAAYVQGNFSGDRWSGNVGLRYVNIKQDIDTYAAATGSTVPDVSSLFGAWTREAFENKHNRVLPSANFKYDLRDDLVLRVAASQTQTLPDFSALGASSYGSDLNRTGGGGNPKLKPVVSTNFDANLEWYFMPRGMLSIGAYSMRLKDYVAFSTEKEMLFSELTNRLEEYNISRPRNADGKVRGIEVAYEQPIGEYFGVNANYTYADGSTDHTWADGSDNLLGTSKNTYNVGAYFENDTFGARVSYTRRSSFLIGLSGANPYYQDDFGTLSASLSYKATDWLSISFDALNLNNPTYKYYQTAAIPTSFYSNGRQYYLNFRFKY
>NZ_CP040431.1|WP_154329603.1|3953613_3955971_+|family-20-glycosylhydrolase
MVKPSRARMRSAVLLGSLLALLPALPALAADPTPATEAPGPLLRAGSLMLIPAPATVQRGQGSGITVRADTVLQAEGEAAQRVASQFADLLARSGGPRLARASGKAAGTSGSIRFQIVPTFRDSGESYTLESTAQGVLIQAGNETGLFYGATTLAQLATGGSNGVLPAVQIQDAPRFSWRGFMLDSARHFQSLDEIKHVLDAMAAHKLNTFHWHLTDDQGWRMEIKRYPKLTDVGSCRLPAGDGGVDPVTGKEHPYCGFYTQDQIREVIAYAAKLHIQVIPEIDVPGHATAAIAAYPELGTIDTPLKPISEWGVFPNLFNTEDSTVTFLENVLEEVIDLFPAKYVHVGGDEAVKDQWEASKQVQQRMRALGIKDEMAMQSHIIKRLETFLEEHDRRLIGWDEILEGGLPPQATVMSWQGTEGGLAAASAGHDVIMSPVGYLYLDYLQTASPNEPPGRPTQVNLGKLYNFEPVPAELAADKRGHILGLQANMFTEHTRSYARLQHNLFPRLAAVAETGWSTPEHRDFRDFLARLPSQLQRYRAWGLAYAQTPFEVGVDYTDNRADNTVTVSLANPLGYEVRYSTDGQPVSAQSPLYQQPLTGKLPTTVQAAAFYQGQMLAAKPTIATFTAQSLLSRRSDELLSCVGKKGLVLRLEDDGPREGNRAVFNVDIFQPCWRWPQAQLDGIGSLEVRAGRIPYYFQLAHDEPKRRFEKAKRAHGEMQVRRGDCSGKVLAEVPLPAKPDADGFVTLKATLPKGTQGSGDLCINFTGDTRPAMWVLDEVTLGK
>NZ_CP040431.1|WP_043034003.1|3956076_3956469_-|membrane-protein
MSEVLPAIKPLRRPRLWAGLWATAVLLVIVVCLIPPPPIPLPENSDKGEHFLAYFILAGSAVQLFRRGRPLLWVGVGLVLMGIGIEFAQGALTSNRMADPMDAIANTIGVLAGMTTALTPLRDLLLRWRG

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Crispr_ID: NZ_CP040431_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040431_10

4346021-4346124

Orphan

Consensus_repeat	Method
GTGTGCCAACCAAGGTTGGCACCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040431_10

>merge|NZ_CP040431|10|4346021-4346124|CRISPRCasFinder
GTGTGCCAACCAAGGTTGGCACCTATCAGGGTGAGTGGGGCCTGGTAGAGGCCGACCTTGGTCGGCGCTTGCCGATTGCGTGTGCCAACCAAGGTTGGCACCTA

>NZ_CP040431|10|8|4346021-4346124|CRISPRCasFinder
GTGTGCCAACCAAGGTTGGCACCTA	TCAGGGTGAGTGGGGCCTGGTAGAGGCCGACCTTGGTCGGCGCTTGCCGATTGC
GTGTGCCAACCAAGGTTGGCACCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040431.1\|WP_154329641.1\|4343407_4345726_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP040431.1\|WP_076739463.1\|4324421_4324808_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_099523846.1\|4340513_4342013_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NZ_CP040431.1\|WP_033833724.1\|4347153_4347804_+\|exopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|368723
NZ_CP040431.1\|WP_005411473.1\|4353602_4353935_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|131894
NZ_CP040431.1\|WP_138464138.1\|4332589_4333408_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_154329642.1\|4346170_4347004_-\|sugar-phosphatase	unknown	unknown	gnl\|CDD\|182509
NZ_CP040431.1\|WP_005411470.1\|4350463_4352230_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173789
NZ_CP040431.1\|WP_099484228.1\|4353936_4354572_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|131889
NZ_CP040431.1\|WP_076739466.1\|4347951_4349262_-\|sorbosone-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|225044
NZ_CP040431.1\|WP_076739463.1\|4342912_4343299_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_154329643.1\|4352910_4353591_-\|SCO-family-protein	unknown	unknown	gnl\|CDD\|224910
NZ_CP040431.1\|WP_076739459.1\|4318958_4321607_-\|RHS-repeat-protein	unknown	unknown	gnl\|CDD\|368509
NZ_CP040431.1\|WP_005414756.1\|4349803_4350232_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_099523846.1\|4322021_4323521_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NZ_CP040431.1\|WP_076739462.1\|4342176_4342842_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_076739459.1\|4337450_4340099_-\|RHS-repeat-protein	unknown	unknown	gnl\|CDD\|368509
NZ_CP040431.1\|WP_111189183.1\|4333420_4337368_-\|type-IV-secretion-protein-Rhs	unknown	unknown	gnl\|CDD\|274730
NZ_CP040431.1\|WP_005414757.1\|4352229_4352808_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040431.1\|WP_005411469.1\|4349254_4349695_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226695

Protein	Function_ID	Function_description	E-value
NZ_CP040431.1\|WP_154329641.1\|4343407_4345726_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.04718e-21
NZ_CP040431.1\|WP_099523846.1\|4340513_4342013_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP040431.1\|WP_033833724.1\|4347153_4347804_+\|exopolysaccharide-biosynthesis-protein	gnl\|CDD\|368723	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD. Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion.	1.95773e-42
NZ_CP040431.1\|WP_005411473.1\|4353602_4353935_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|131894	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	3.92143e-34
NZ_CP040431.1\|WP_154329642.1\|4346170_4347004_-\|sugar-phosphatase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	0
NZ_CP040431.1\|WP_005411470.1\|4350463_4352230_+\|S8-family-serine-peptidase	gnl\|CDD\|173789	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.	2.41377e-105
NZ_CP040431.1\|WP_099484228.1\|4353936_4354572_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	gnl\|CDD\|131889	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	1.94246e-101
NZ_CP040431.1\|WP_076739466.1\|4347951_4349262_-\|sorbosone-dehydrogenase-family-protein	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	7.28459e-97
NZ_CP040431.1\|WP_154329643.1\|4352910_4353591_-\|SCO-family-protein	gnl\|CDD\|224910	COG1999, COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only].	2.28788e-50
NZ_CP040431.1\|WP_076739459.1\|4318958_4321607_-\|RHS-repeat-protein	gnl\|CDD\|368509	pfam05593, RHS_repeat, RHS Repeat. RHS proteins contain extended repeat regions. These repeats often appear to be involved in ligand binding. Note that this model may not find all the repeats in a protein and that it covers two RHS repeats. The 3D structure of an RHS-repeat-containing protein (the B and C components of an ABC toxin complex) has been determined. The RHS repeats form an extended strip of beta-sheet that spirals around to form a hollow shell, encapsulating the variable C-terminal domain.	0.00181564
NZ_CP040431.1\|WP_099523846.1\|4322021_4323521_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP040431.1\|WP_076739459.1\|4337450_4340099_-\|RHS-repeat-protein	gnl\|CDD\|368509	pfam05593, RHS_repeat, RHS Repeat. RHS proteins contain extended repeat regions. These repeats often appear to be involved in ligand binding. Note that this model may not find all the repeats in a protein and that it covers two RHS repeats. The 3D structure of an RHS-repeat-containing protein (the B and C components of an ABC toxin complex) has been determined. The RHS repeats form an extended strip of beta-sheet that spirals around to form a hollow shell, encapsulating the variable C-terminal domain.	0.00181564
NZ_CP040431.1\|WP_111189183.1\|4333420_4337368_-\|type-IV-secretion-protein-Rhs	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	8.27097e-24
NZ_CP040431.1\|WP_005411469.1\|4349254_4349695_-\|hypothetical-protein	gnl\|CDD\|226695	COG4244, COG4244, Predicted membrane protein [Function unknown].	9.28321e-12

>NZ_CP040431.1|WP_154329641.1|4343407_4345726_-|TonB-dependent-receptor
MNTPPTTRLALAIIAAITAPAYAADTHDAAHDSPTTLNALQVIATPRGAAVAPTQVVGPNRYIIKADDLDAMVTGNNGLAMLKQVPGASYTATDGLGLDISATSLFVRGFRMNEMGITFEGVPLNDNGFLSLTGTSVVNVGVPDGIGAITVSPGGAPVSVFSSSVNGGSLEYRLRELQDTPSLRVKQGVGSNNTLVTTASGQSGQLGEHGPKVLVDLQRVSADKYQGEGTQNFLRGDLKLQQDVAWGDFTVFLSDSKAKVWGYNNISFDMIRKLGWKADIFYPDYAWAYYVASPENADKSCGAYTCGELSELIPYDTGQSTRDRVSSISHRFQISPALSGNVQLYNANSHTQATLTDPTVPSPNGAPFSEQVQTPRLNRLGGMLNLQFETGAHTFTAGFWQEKSKAAAKTEWYQQPLLGEGPPLKATGPFDVYGPAFKTDNASSWVTRSRQFYLQDDIVLNDTLKLGVGFKAVDFRTRGGGLGDAKDRPVNGTLRAKSNFLPHVSLFWSPTESTDAFIDLANTMNGYRAAQRGNIGYTASAWTITDQEEFDRVAGTLRPEKNWNLTVGASHRFDRLTITGDVFYNDIRNRLLSAAIGTQFAQINTVRLMPKMHVIGADLGITADLSDHLQFYQGVAVARSYYDSDFVVGDTVYPIKGNAQPGYPQISLVSDLSAHFGDWRFGATSTSYLRQPFTYENDIRVPTFWQVNTYAAYRFGADSAVPGLELRLDVSNLFNRHNIGTATIAGSSFSGDYQTLQRSAPRQLMLSTSMAF
>NZ_CP040431.1|WP_076739463.1|4342912_4343299_-|hypothetical-protein
MLLGHPVGMAQYNPRTPLFGIRGPGRPRKALSVAPVIDLQAEYQFWHVYERVVRPLPGGGLRLAWLVCQKVYRDRWQHPDDSDEAALSRVLFGGNMTADRASELAELHALVSRRVALLAKRGRLHSAA
>NZ_CP040431.1|WP_076739462.1|4342176_4342842_+|hypothetical-protein
MSHDRFEEALSLERFGRYLDWAGGDRSRAIALYGCNTHLSESLYAPLQTLEVALRNRIHTVLTQAKGEAWYGRGAGALKVAHQLEQVAKAVNELVRAGKTVTAGGVVASLTFSFWTTMFNKDYEALWQQILHRIADPSAPRGLKRRSFSGPLTRIRVLRNRIAHHEPILGWNLRGHHDEILTLIEWLSPPAATWCRENNRFPQAYPEDGITLVCSPESNRR
>NZ_CP040431.1|WP_099523846.1|4340513_4342013_+|YifB-family-Mg-chelatase-like-AAA-ATPase
MSLALVHSRARAGVDAPLVRVEVHLSGGLPATQIVGLAETSVRESRERVRAALLCARFDFPQRRITLNLAPADLPKEGGRYDLAIALGILAASGQVDPQSLLQYEFLGELGLTGELRPVAGALPAAIAAAEAGRILVVPPGNAAEAALAEHADVRVARTLLECCAGLGNPRLLPPVERVDTTPLPLPDLADVRGQAHARRALEVAAAGGHHLLLIGSPGCGKTLLASRLPSLLPDTEETEALQLAAIASVSGEGLDARRWRQRPFRAPHHSASAAALVGGGNPPCPGEISLAHHGVLFLDELPEWNRSALETLREPLESGHIRIARATRSVQYPARFQLVAAMNPCPCGWAGDRSNRCLCSDERINRYRARVSGPLLDRIDLHIGVTRMDAVELRESTPLGEPSESVRARVEAAHARQQARGGLNAHLPPAALRACTRLSEGDQDMLEQAIERLQLSARAMHRILRVARTIADLAGCEDIQTAHLAEAIGYRQLDRGNA
>NZ_CP040431.1|WP_076739459.1|4337450_4340099_-|RHS-repeat-protein
MISAKDRRGENAPCSVYPGSPLCSLIVGLALTLGAGFHVSAQDGLFNYQEYEKRVKSAQSLAAISADEVFGDRTSGFDGSTEFLVEDVSIPGNFDLPVSIARRFGVEAVNRGSRYSEAKGLTLFDDWEIVVPHMSGVWTKGAGWITGDPGAQTTQRCSVNKAPYLLETWGYTNIGFGIDVKWQGGNGEELLIADDPSHATAPGLEAPKWMTASRARFTCLAATRNGYPGEAFIGHTPDGKKYFFDWGVERPYATAQFSDGAANRSVGRKRVYLLASRVEDRYGNWVSYSYNGDKLTKIESSDGRRIDLSYDGDGRVTSVQANGRIWRYSYVGDTDGNDGGLSQVTLPDGSAWAYSHRGRLQSSFPIRKADDEGGCEIRAGTEPPPTQMTVVAPSGARGIFDFEMELFIRSDPCNGLTPSHYQAWSLKKRTITGPGLSPMVTARSYNLQLPGSGRWSSLTKPNGTQIRERYGANPALNERKLMQKQVLDAAGQVQRDELYTYTFGSESGPFRTRVGHSIGVQAGQFLAGMLSALSESTFSQDGDTYRVVYSDFDRKARPARVSYTGPSGTKAEIREHLDTASPWVLDQVLSVKEAASGKITTQYAYDGMAKPNAVYRAGALLQSVTYAADGTISAVRDGKGNETQIQDWYRGVPRLVINPDGTTNRMSADGNGWITSTTDALQRTTSYLHDPMGRVREVQPPVDENQWAKTTISFRQVAADEYGLSPGHWRVDNAQGARRQETYLDALWQPLLVREYDANNVAGTQRWVRNAYDSEGRLTFTSYPSSDSTVATGTWTEYDALGRKTSSSQDSEQGLLITTIGYSSNATTTVVDPLGHQTITRFDAFEGPDYGKPAQIIRADGSKVSIKRNAFGLTTEVAQSAN
>NZ_CP040431.1|WP_111189183.1|4333420_4337368_-|type-IV-secretion-protein-Rhs
MCQVAHAQAWIELTGPAQTSYTAPATYQLQLKSGVRGTGPKAEYLSDIQLMRNGQVISRLPSGTYTENGISPGSYQYVYRALAVRNVNGDEFTRELTSPVITITVAAPPAPFDGAEYVSASWPRSADRGTPFSGTVTFRNTGNTTWRAGDGYRLGQAERYVSSAARLGIADVAVPHDVGPGGTVTFTFNGAAANENGPSTLQWQMNRNGVRFGSTSSEQTFETTGRLNRGVMYEQEVPTSMEAGRTYRVKLKFVNTGNTTWSASAGYALGSWNPNDNVRWGRARVPMPNDVSPQLPAFFEFDVVAPSLPGVYSFQWRLLEEGKEWFGRESDNVQVTVNGPPSKVIGNIDGVTSDGQIRGWACSTGIDSSIDIHVYTGGAAGSGGTIFLTGKADLASEPAVATSCKAGGNHRFSLPMSNEQRRQRAGQPIYVHGISPVGQPNNTIGGSGAFVVPAAPSGTLSVSPAMCQIAAGAQTCNVTLTWSATDSRAELKRDGGSVVGSGASGSIVVPIGAGTNRFTLSVAGDAIAQAAATAKAAPTLPVNPDNPAPTVARRYVYDDNLRLCKVIEPETGATVFGYDAAGNLAWSASGLELPSLTECNREAPQIAARRVSRNYDASNRLQTVVYPDGLGDQQLEYTPTGQLKTERVFNQDRVPVVTTRTYNSLGSVVSQSRVIGSASARTLAFGYDHMGQHVRTDYPDGYSVQQSLNALGQPVRLQDGTGAVLASNIAYFPSGETAALTYGNGIVRGVTENARQLTSRIVDSGMVDLNYSYDATGNISQISDAVRGDSWKISLGYDRLDRLIQARAPAFGGNGQYTFGYDTLDNIVSMRLPGKRERTFHYDTRNRLELLRDPSGNGVSGFSYDAAGNLAVRNGQTFTYDMGGQLRSAGDVQKYFYDGAGLRAYATASTSAPTSENSPILGKAPITGSHNWDVSIPERGGGELGFLASDLDRSWQYLVGGELIESTQGGETSDYIYLGKRLLAIRTSSATGATLTYLHHDALNTLVATSRANGEVLTRHFWSPYGEADAAPAAKIPGYSGHLADPDTGLVYMGRRYYDPQLARFISPDPLAASTSGGPNFNRYRYASNNPFRFSDPTGACDQATGSHMCNGSWFAGANLTGAPSPTPGGVPQHDPNAPAPAEIVKATGLGAIEEYFSERNFFIGQGSLTDFDAVSEAIVVPLMNSPTGSTAAGGLKLASIMVVLRGGNAARGFGNLSRAGEFGIASYNSLKRMVGTGSGLQVHHLIEKRFAGVMQVKEGEMLSVVVTRTEHQVFTNQWRSMFPYGRPPPSQAQIMDAARSIYANHPAILKSLGL
>NZ_CP040431.1|WP_138464138.1|4332589_4333408_-|hypothetical-protein
MKIKYRFAFTWSEARALQLRALGLKVQPPADPRPEVGGIAVSFALEGAPGWSEACSLIRSWNGATSVTTEFTAAEISEAAHCALQVVHASGYPQPERDFLYLEQVYDLSARCPKCGEGAVQVAPFRIKKTLKWGRNAFLKLNWVEEACFMQTSVWSEHLRPLGIGVLPVEDTRGSLLDEVVQLDLGPVVPLCMGELEGVRCEKCGRERYQWHDRGFFPSIKNPPDVPIFRSSQRFGVEHQSANAMIVSATVANAIRAAGLRGVELWPCAPAG
>NZ_CP040431.1|WP_076739463.1|4324421_4324808_-|hypothetical-protein
MLLGHPVGMAQYNPRTPLFGIRGPGRPRKALSVAPVIDLQAEYQFWHVYERVVRPLPGGGLRLAWLVCQKVYRDRWQHPDDSDEAALSRVLFGGNMTADRASELAELHALVSRRVALLAKRGRLHSAA
>NZ_CP040431.1|WP_099523846.1|4322021_4323521_+|YifB-family-Mg-chelatase-like-AAA-ATPase
MSLALVHSRARAGVDAPLVRVEVHLSGGLPATQIVGLAETSVRESRERVRAALLCARFDFPQRRITLNLAPADLPKEGGRYDLAIALGILAASGQVDPQSLLQYEFLGELGLTGELRPVAGALPAAIAAAEAGRILVVPPGNAAEAALAEHADVRVARTLLECCAGLGNPRLLPPVERVDTTPLPLPDLADVRGQAHARRALEVAAAGGHHLLLIGSPGCGKTLLASRLPSLLPDTEETEALQLAAIASVSGEGLDARRWRQRPFRAPHHSASAAALVGGGNPPCPGEISLAHHGVLFLDELPEWNRSALETLREPLESGHIRIARATRSVQYPARFQLVAAMNPCPCGWAGDRSNRCLCSDERINRYRARVSGPLLDRIDLHIGVTRMDAVELRESTPLGEPSESVRARVEAAHARQQARGGLNAHLPPAALRACTRLSEGDQDMLEQAIERLQLSARAMHRILRVARTIADLAGCEDIQTAHLAEAIGYRQLDRGNA
>NZ_CP040431.1|WP_076739459.1|4318958_4321607_-|RHS-repeat-protein
MISAKDRRGENAPCSVYPGSPLCSLIVGLALTLGAGFHVSAQDGLFNYQEYEKRVKSAQSLAAISADEVFGDRTSGFDGSTEFLVEDVSIPGNFDLPVSIARRFGVEAVNRGSRYSEAKGLTLFDDWEIVVPHMSGVWTKGAGWITGDPGAQTTQRCSVNKAPYLLETWGYTNIGFGIDVKWQGGNGEELLIADDPSHATAPGLEAPKWMTASRARFTCLAATRNGYPGEAFIGHTPDGKKYFFDWGVERPYATAQFSDGAANRSVGRKRVYLLASRVEDRYGNWVSYSYNGDKLTKIESSDGRRIDLSYDGDGRVTSVQANGRIWRYSYVGDTDGNDGGLSQVTLPDGSAWAYSHRGRLQSSFPIRKADDEGGCEIRAGTEPPPTQMTVVAPSGARGIFDFEMELFIRSDPCNGLTPSHYQAWSLKKRTITGPGLSPMVTARSYNLQLPGSGRWSSLTKPNGTQIRERYGANPALNERKLMQKQVLDAAGQVQRDELYTYTFGSESGPFRTRVGHSIGVQAGQFLAGMLSALSESTFSQDGDTYRVVYSDFDRKARPARVSYTGPSGTKAEIREHLDTASPWVLDQVLSVKEAASGKITTQYAYDGMAKPNAVYRAGALLQSVTYAADGTISAVRDGKGNETQIQDWYRGVPRLVINPDGTTNRMSADGNGWITSTTDALQRTTSYLHDPMGRVREVQPPVDENQWAKTTISFRQVAADEYGLSPGHWRVDNAQGARRQETYLDALWQPLLVREYDANNVAGTQRWVRNAYDSEGRLTFTSYPSSDSTVATGTWTEYDALGRKTSSSQDSEQGLLITTIGYSSNATTTVVDPLGHQTITRFDAFEGPDYGKPAQIIRADGSKVSIKRNAFGLTTEVAQSAN
>NZ_CP040431.1|WP_154329642.1|4346170_4347004_-|sugar-phosphatase
MDMGRRQSTIELVAIDMDGTLLDPSHQLTPRARKAIAQARALGVHIVLTSGRPVPGLAPYLHELGITGNDDYCIACNGGLVQRVGTRETVVEYPLSFDDFLFCEQVAREVGVHFQALDSQRMYTPNQDISYYTVADSHLSRMPLSYRRVEDMDPSMSFIKLMMIDEPEVLDAAIARLPSELTERFAVLKSAPYFLEVFDHRAGKGPSLQQLAEHLGIDRANVMAIGDQENDLTMLQYAGTSVAMGNAIDAVKAVARFETSSNADDGVARAIERFVLQ
>NZ_CP040431.1|WP_033833724.1|4347153_4347804_+|exopolysaccharide-biosynthesis-protein
MTYRAPETDDSAPLAQQIEQMIDELPGDQVRVGTLLSALGDEGLLLIVILLSAIFIIPVSIPGLSTVFGASILLIGLSRVRNRPLWVPQKLARREIATDKLKANLGRALKWVHRMERLSRPMRLAVMVRSKKMMRLNNLMLVFATLLLMAPAGPIPFSNTLPALALMSFAIGFIQRDGAAVVAGYGFLVATVVYFGVLLGGVGFAAESVFSGFRAR
>NZ_CP040431.1|WP_076739466.1|4347951_4349262_-|sorbosone-dehydrogenase-family-protein
MAKHILPTVAALALAAALSACAGKAEYHPADQSGPQPPLPKPANFLMPPMQVPKGVGWADGQTPTVAEGLKIERIAANLQHPRRLLTLPNGDVLVVEGNGPGEEPVTTPKQWIAGKVKARSGKAGKGGNRVTLLRRTPGTNTWTQHVYIEGLHSPFGIQLIGDTLYVANTGNIVQYHYVPGETRMSDKGREFTDLPSTINHHWTKELLASRDGRKLYVGVGSNSNITENGLAVEYRRAVVLEVDVATRGSRIFASGIRNPTGLDWEPSTGTLWAVANERDEIGADLVPDYLTSVKEDGFYGWPYSYYGQHVDERVQPQRPDLVAKAITPDYAIGSHVAPLGLLFYTGQALPAQYHGGAFIGEHGSWDRSPLSGYEVVYVPFKDGKPTGRPQTVVSGFASKDEKKLMGAPVGMAMDAEGALLVADDVGDVVWRVSAK
>NZ_CP040431.1|WP_005411469.1|4349254_4349695_-|hypothetical-protein
MVNPLAQAHRGLGTTLFSLLNPIPFGFFVGALIFDAIYLNSAEVMWGKAAAWLITFGLLIAILPRLINLFAVWRRNGTATRIDRIDFFLNLVAVVLAIWNAFVHSRDAYAVAVPGTILSALTVALIALGLILLSLQPPVLQGGRHG
>NZ_CP040431.1|WP_005414756.1|4349803_4350232_-|hypothetical-protein
MQMKTRMKNGRQRARARADQTPLSVAAIRKVVLSVHTRSHDYGDDADIAELLPELAAFGITTVKPLRLLMKRHRRALLQEERIVMRRAETLHLRTEWRLGGIDVHANTSRYAIGGLVRTSMEHEFGFETMLPFHEVREDESA
>NZ_CP040431.1|WP_005411470.1|4350463_4352230_+|S8-family-serine-peptidase
MKRHTQRSAPPRSARLALATALVLGSLAATAQAQQADPLAGIQWHLLNTGQTVPADTLPVAGNDLNVDGLFRNGIRGQGVTIAIVDDGLQIAHPDLAANVAAVAGKNFTNGSNNPTPTNPDVDNHGTMVGGIAGAVGANNLGVRGVAPAATLKGFNPISRSALGNQQSNIEYAWWDGAESADVQVFNNSWGAGPGNPNLPLAYSENTIRSYEQALSGTRGGRGGIYVKSAGNNFNNASISQTQDVCTTDTKNRNTGCVPAGRDPRNNLFNVITVGAVRADGVRSSYSSTGSALWVSAFGGEYGLQAQYAPGLVARAYDPAIVTTDVTGCAQGSNKNTNRQNTLDSNLSAIDSTCNYTAKMNGTSASAPMVSGVAALVLEANPNLSYRDVKYILATTATRNHPNQPAVTLADGRTLVPGWTVNAAGRAYSNWYGFGVVNAARAVQVAENFQSLGALVDSGWRNTTRTVAIGNTSAAAARLTFQLANGARNIESVQLGFRVNHRNTRQLQFVLVSPSGTRSVVQPAFTAIGSGTGGAQSNFTSWDLLSSNAFLDENASGTWTLEVTDMGQAATAASRGNLEFFKIRVLGH
>NZ_CP040431.1|WP_005414757.1|4352229_4352808_+|hypothetical-protein
MMKTTILLSTLAFAAMTSPAWAQSSGQTPPARTLSTVDAQELKASATGRSFDVGGTRFQLSPSTTVKQASGGQFTITPQAAATTSSRTKRSLDGAAAAPADAGAGKFAAAVSRDGAPVVATSRVKVFFTDAASAQRAATATGGTVVKVSKASGQAIVEYPSVNAALDATTRLLSTAGIRATEPDVVQWEETK
>NZ_CP040431.1|WP_154329643.1|4352910_4353591_-|SCO-family-protein
MKGIAFPQRGLRLAAGLLLGLLAGCSAQSRMDFYSKDIACEELGQQWSMPDSHGTVRGPKDLQGQVTYLFFGFTSCPDVCPTTMVELSQVKHLMGKDADQLQVVFVSVDPARDTPEVARTYVEAFDPKAIALVGNEAQLAAMASDFKAFYDKEPGQVPDTYTMSHIAGGYVFDRQGRLRLFAPYGMPVDKLFSDVQRLLLEPAHPAAGNDALASCSRKHSGTLAAR
>NZ_CP040431.1|WP_005411473.1|4353602_4353935_-|cytochrome-o-ubiquinol-oxidase-subunit-IV
MAHVETSRAGNAHGSTKSYLIGFVLCALLTVVPFALVMNPVLSRPLTLFLLVGFAVAQILVQLVYFLHMDRKSEGGWNLASFVFTLVILFIIVALSVWIIWSMHYHMMIN
>NZ_CP040431.1|WP_099484228.1|4353936_4354572_-|cytochrome-o-ubiquinol-oxidase-subunit-III
MNLLTRPELASDTQAREDHHEHDQGHEQGGMKVFGMWVYLMSDLVLFGSLFASYAVLSTAYAGGPTGKDLFSLPFVMAETFLLLVSSITYGQAVLAMHRHDTSAVLRWLGVTFVLGASFIGMEIYEFSHLIHEGAGPSTSAYLSAFFALVATHGLHVASGLIWMAVVMHQVYRRGLTPTNITRVSCLSLFWHFLDLVWICVFTFVYLIGAF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040431_9	9.1\|3940146\|26\|NZ_CP040431\|CRISPRCasFinder	3940146-3940171	26	NZ_CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	323708-323733	3	0.885
NZ_CP040431_9	9.1\|3940146\|26\|NZ_CP040431\|CRISPRCasFinder	3940146-3940171	26	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	191227-191252	5	0.808
NZ_CP040431_9	9.1\|3940146\|26\|NZ_CP040431\|CRISPRCasFinder	3940146-3940171	26	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	855999-856024	5	0.808
NZ_CP040431_7	7.1\|3747597\|31\|NZ_CP040431\|CRISPRCasFinder	3747597-3747627	31	NC_010879	Burkholderia glumae strain BGR1 plasmid pBGF2, complete sequence	12346-12376	8	0.742

1. spacer 9.1|3940146|26|NZ_CP040431|CRISPRCasFinder matches to NZ_CP024936 (Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence) position: , mismatch: 3, identity: 0.885

agcg-gatcatggcgtcgattggccct	CRISPR spacer
-gcgcgatcatggcgtcgatcggcccg	Protospacer
 *** ***************.*****

2. spacer 9.1|3940146|26|NZ_CP040431|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 5, identity: 0.808

agcggatcatggcgtcgattggccct	CRISPR spacer
ggcggatcctggcgccgattggccgc	Protospacer
.******* *****.********* .

3. spacer 9.1|3940146|26|NZ_CP040431|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 5, identity: 0.808

agcggatcatggcgtcgattggccct	CRISPR spacer
ggcggatcctggcgccgattggccgc	Protospacer
.******* *****.********* .

4. spacer 7.1|3747597|31|NZ_CP040431|CRISPRCasFinder matches to NC_010879 (Burkholderia glumae strain BGR1 plasmid pBGF2, complete sequence) position: , mismatch: 8, identity: 0.742

cggtagatccgcgccatgcgtggatgggaaa	CRISPR spacer
cgtcagatccgcgccatccgcggatggctcg	Protospacer
** .************* **.******   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

281098 : 339311

Stenotrophomonas_phage(80.49%)

plate,transposase,portal,terminase,capsid,head,tRNA,tail,holin,integrase

attL 274561:274592|attR 318814:318845

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
274561:274592	attL	NA	NA	NA	NA
WP_061478821.1\|281098_282013_-	DNA cytosine methyltransferase	A0A088FRI5	Mycobacterium_phage	8.3e-36	34.9
WP_154329146.1\|282009_282798_-	hypothetical protein	A0A0E3M3Z6	Verrucomicrobia_phage	4.2e-36	37.2
WP_154329147.1\|282790_282982_-	hypothetical protein	NA	NA	NA	NA
WP_154329148.1\|282974_283160_-	hypothetical protein	NA	NA	NA	NA
WP_154329676.1\|283152_283569_-	hypothetical protein	V9IQL6	Stenotrophomonas_phage	6.9e-30	58.3
WP_154329149.1\|283929_286626_-	bifunctional DNA primase/helicase	V9IQW5	Stenotrophomonas_phage	0.0e+00	83.5
WP_099561574.1\|286827_287064_-	hypothetical protein	V9IQH4	Stenotrophomonas_phage	4.1e-11	55.7
WP_154329150.1\|287084_287393_-	hypothetical protein	V9IQM8	Stenotrophomonas_phage	5.3e-19	51.4
WP_099561573.1\|287392_287635_-	hypothetical protein	V9IQX5	Stenotrophomonas_phage	8.1e-23	66.2
WP_099561555.1\|287958_288165_-	hypothetical protein	V9IQL4	Stenotrophomonas_phage	9.3e-20	72.1
WP_032963111.1\|288231_288576_-	hypothetical protein	V9IQW3	Stenotrophomonas_phage	5.3e-36	62.8
WP_076738385.1\|288572_288905_-	hypothetical protein	A0A1B0VRL1	Pseudomonas_phage	1.7e-07	52.5
WP_050426929.1\|289049_289421_+	hypothetical protein	NA	NA	NA	NA
WP_154329151.1\|289805_290837_-	phage late control D family protein	V9IQM7	Stenotrophomonas_phage	5.9e-123	71.6
WP_024956195.1\|290833_291235_-\|tail	phage tail protein	V9IQX3	Stenotrophomonas_phage	1.6e-52	79.4
WP_154329152.1\|291246_294111_-\|tail	phage tail tape measure protein	V9IQL1	Stenotrophomonas_phage	0.0e+00	74.2
WP_032963109.1\|294283_294400_-\|tail	GpE family phage tail protein	V9IQH2	Stenotrophomonas_phage	8.9e-12	97.4
WP_099561551.1\|294408_294720_-\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	6.3e-36	83.2
WP_154329153.1\|294781_295291_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	6.0e-84	91.7
WP_154329154.1\|295311_296481_-\|tail	phage tail protein	E5FFG9	Burkholderia_phage	4.1e-144	65.3
WP_024956190.1\|296496_296847_-\|plate	baseplate assembly protein	V9IQW0	Stenotrophomonas_phage	2.6e-38	67.2
WP_154329155.1\|296843_297392_-\|plate	phage baseplate assembly protein V	V9IQH1	Stenotrophomonas_phage	5.3e-38	52.6
WP_154329156.1\|297679_298846_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	1.9e-53	47.1
WP_154329157.1\|298849_299401_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	2.6e-56	56.6
WP_154329158.1\|299393_300284_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	9.4e-109	67.2
WP_099561485.1\|300370_300832_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	5.8e-70	92.0
WP_099561486.1\|300828_301314_-\|tail	phage tail protein	V9IQM0	Stenotrophomonas_phage	1.8e-61	77.2
WP_154329159.1\|301310_301835_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	2.0e-50	70.2
WP_154329160.1\|301834_302470_-	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	6.1e-78	86.3
WP_024956181.1\|302471_302747_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	2.0e-33	76.7
WP_024956180.1\|302739_303099_-	membrane protein	V9IQG9	Stenotrophomonas_phage	2.1e-43	90.7
WP_111105487.1\|303101_303317_-\|tail	phage tail protein	V9IQL8	Stenotrophomonas_phage	1.2e-17	63.4
WP_109336986.1\|303316_303784_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	2.9e-77	96.8
WP_099561254.1\|303888_304596_-\|terminase	terminase	V9IQK3	Stenotrophomonas_phage	3.4e-85	99.4
WP_109336987.1\|304598_305615_-\|capsid	phage major capsid protein, P2 family	V9IQV7	Stenotrophomonas_phage	2.2e-162	88.2
WP_154329161.1\|305648_306509_-\|capsid	phage capsid protein	V9IQG8	Stenotrophomonas_phage	1.9e-122	99.6
WP_154329162.1\|306627_308421_+\|terminase	terminase	V9IQL5	Stenotrophomonas_phage	0.0e+00	97.1
WP_154329163.1\|308420_309434_+\|portal	phage portal protein	V9IQW4	Stenotrophomonas_phage	2.5e-174	97.1
WP_154329164.1\|309430_309688_+	Com family DNA-binding transcriptional regulator	V9IQK2	Stenotrophomonas_phage	4.5e-40	95.3
WP_154329165.1\|309605_310316_+	site-specific DNA-methyltransferase	V9IQV5	Stenotrophomonas_phage	4.5e-130	94.0
WP_154329166.1\|310381_311083_-	NYN domain-containing protein	NA	NA	NA	NA
WP_154329167.1\|312621_313296_-	hypothetical protein	NA	NA	NA	NA
WP_154329168.1\|313292_314369_-\|integrase	tyrosine-type recombinase/integrase	A0A2D1GMX8	Marinobacter_phage	1.5e-63	40.3
WP_154329169.1\|314494_315490_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_005407693.1\|315703_316078_+	hypothetical protein	NA	NA	NA	NA
WP_004136763.1\|316151_316835_+	response regulator transcription factor	NA	NA	NA	NA
WP_032953760.1\|316860_318285_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_099484566.1\|319227_319977_-	zinc-dependent peptidase	NA	NA	NA	NA
318814:318845	attR	NA	NA	NA	NA
WP_005407696.1\|319985_320264_-	hypothetical protein	NA	NA	NA	NA
WP_099480825.1\|320408_321377_+	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA	NA	NA	NA
WP_005407698.1\|321373_322105_+	type III pantothenate kinase	NA	NA	NA	NA
WP_099484565.1\|322114_322963_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_099484564.1\|323433_323736_+	putative addiction module antidote protein	NA	NA	NA	NA
WP_099484589.1\|323818_324520_-	NYN domain-containing protein	NA	NA	NA	NA
WP_099484563.1\|324855_325257_-	hypothetical protein	NA	NA	NA	NA
WP_099484562.1\|325839_326610_+	DUF3011 domain-containing protein	NA	NA	NA	NA
WP_099484588.1\|326631_327018_-	hypothetical protein	NA	NA	NA	NA
WP_099484561.1\|327109_328030_+	arginase	A0A0N9R043	Chrysochromulina_ericina_virus	2.2e-28	33.6
WP_005407710.1\|328190_328328_+	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_004153772.1\|328534_328756_+	CsbD family protein	NA	NA	NA	NA
WP_049449498.1\|328829_329639_-	hypothetical protein	NA	NA	NA	NA
WP_049395252.1\|329747_331040_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_099484560.1\|331250_331547_+	hypothetical protein	NA	NA	NA	NA
WP_099484559.1\|331796_332729_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_099484558.1\|332834_334487_+	M28 family peptidase	NA	NA	NA	NA
WP_005407716.1\|334664_334964_-	hypothetical protein	NA	NA	NA	NA
WP_049395254.1\|335031_336366_-	MFS transporter	Q6JIH2	Burkholderia_virus	5.0e-29	28.1
WP_024956155.1\|336587_337715_-	ABC transporter permease	NA	NA	NA	NA
WP_099484557.1\|337705_338443_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.2e-13	27.6
WP_099482019.1\|338429_339311_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

656885 : 668015

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012479083.1\|656885_657941_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.4e-79	46.2
WP_012479084.1\|657955_658843_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.7e-98	58.9
WP_012479085.1\|658839_659397_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.4e-46	51.1
WP_012479086.1\|659393_660299_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	4.1e-27	36.2
WP_143568537.1\|660491_661787_+	hypothetical protein	NA	NA	NA	NA
WP_099484607.1\|661839_663243_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	2.3e-40	28.1
WP_076739444.1\|663254_664601_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	7.7e-30	26.7
WP_099484608.1\|664697_668015_-	DEAD/DEAH box helicase	A0A0P0YNJ0	Yellowstone_lake_phycodnavirus	1.1e-45	34.7

DBSCAN-SWA_3

1022878 : 1070816

Rhizobium_phage(25.0%)

terminase,capsid,head,tail,protease,integrase

attL 1015223:1015249|attR 1080742:1080768

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1015223:1015249	attL	NA	NA	NA	NA
WP_049417433.1\|1022878_1024123_-\|integrase	site-specific integrase	A0A0F7L7C7	uncultured_marine_virus	4.8e-10	27.9
WP_005412378.1\|1024190_1024565_-	hypothetical protein	NA	NA	NA	NA
WP_005412379.1\|1025304_1025445_-	hypothetical protein	NA	NA	NA	NA
WP_032961789.1\|1025686_1026307_-	antirestriction protein	U5P3Z5	Mycobacterium_phage	5.7e-20	34.5
WP_032961791.1\|1026370_1026631_-	hypothetical protein	NA	NA	NA	NA
WP_032961794.1\|1026627_1026810_-	hypothetical protein	NA	NA	NA	NA
WP_005412383.1\|1026806_1027247_-	hypothetical protein	NA	NA	NA	NA
WP_005412384.1\|1027246_1027570_-	hypothetical protein	NA	NA	NA	NA
WP_005412385.1\|1027622_1028222_-	hypothetical protein	Q8HAP4	Burkholderia_phage	6.5e-13	41.1
WP_154267699.1\|1028525_1028687_-	hypothetical protein	NA	NA	NA	NA
WP_032961796.1\|1029762_1030092_+	hypothetical protein	NA	NA	NA	NA
WP_043033726.1\|1030307_1030640_+	hypothetical protein	NA	NA	NA	NA
WP_125899042.1\|1030728_1031130_+	response regulator	NA	NA	NA	NA
WP_005412387.1\|1031151_1031604_-	hypothetical protein	Q7Y5G6	Xanthomonas_virus	1.5e-09	32.9
WP_005412388.1\|1031600_1031909_-	hypothetical protein	NA	NA	NA	NA
WP_065426719.1\|1031918_1032416_-	hypothetical protein	A0A2H4JFP9	uncultured_Caudovirales_phage	5.2e-40	59.2
WP_005412390.1\|1032412_1032604_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_005412391.1\|1032612_1034286_-\|terminase	phage terminase large subunit	A0A2R2ZGE7	Ralstonia_phage	3.6e-178	56.5
WP_032961803.1\|1034285_1034531_-	hypothetical protein	NA	NA	NA	NA
WP_005412393.1\|1034527_1034797_-	hypothetical protein	NA	NA	NA	NA
WP_126411773.1\|1034823_1035309_-	hypothetical protein	NA	NA	NA	NA
WP_049427184.1\|1035308_1038113_-	hypothetical protein	A0A142EZL1	Stenotrophomonas_phage	7.2e-38	40.1
WP_005412396.1\|1038138_1040676_-	DUF1983 domain-containing protein	NA	NA	NA	NA
WP_099470283.1\|1040715_1043808_-	hypothetical protein	L7TQZ1	Rhizobium_phage	3.2e-47	23.3
WP_032961810.1\|1043886_1046061_-	hypothetical protein	NA	NA	NA	NA
WP_032961812.1\|1046064_1046463_-	hypothetical protein	NA	NA	NA	NA
WP_005412400.1\|1046495_1046969_-	hypothetical protein	NA	NA	NA	NA
WP_005412401.1\|1046965_1049098_-	hypothetical protein	L7TLW2	Rhizobium_phage	3.6e-66	31.5
WP_005412402.1\|1049097_1049688_-	hypothetical protein	A0A2R2ZGD2	Ralstonia_phage	1.7e-26	41.9
WP_005412403.1\|1049787_1050741_-\|capsid	phage capsid protein	L7TJ83	Rhizobium_phage	2.4e-62	42.7
WP_005412404.1\|1050767_1051553_-\|capsid	capsid assembly protein, putative	A0A1B1IVZ8	uncultured_Mediterranean_phage	1.1e-20	30.6
WP_004154577.1\|1051552_1051696_-	hypothetical protein	NA	NA	NA	NA
WP_005412405.1\|1051712_1053269_-\|head,tail	phage collar / T7-like phage head-to-tail joining protein	L7TJ79	Rhizobium_phage	1.1e-85	37.6
WP_005412406.1\|1053261_1053414_-	hypothetical protein	NA	NA	NA	NA
WP_005412407.1\|1053434_1053614_-	hypothetical protein	NA	NA	NA	NA
WP_004154581.1\|1053678_1054215_-	adenylate kinase	A0A2H4J8A1	uncultured_Caudovirales_phage	1.4e-30	46.1
WP_032961816.1\|1054283_1054592_+	hypothetical protein	NA	NA	NA	NA
WP_005412408.1\|1054617_1054824_-	hypothetical protein	NA	NA	NA	NA
WP_004154583.1\|1054811_1055645_-	hypothetical protein	M1HMA9	Pelagibacter_phage	2.0e-36	36.0
WP_005412410.1\|1055641_1055791_-	hypothetical protein	NA	NA	NA	NA
WP_043033722.1\|1055787_1056099_-	hypothetical protein	NA	NA	NA	NA
WP_005412412.1\|1056095_1056344_-	hypothetical protein	NA	NA	NA	NA
WP_005412414.1\|1056494_1056860_-	hypothetical protein	NA	NA	NA	NA
WP_050483582.1\|1056856_1057195_-	hypothetical protein	A0A2H4P845	Pseudomonas_phage	9.6e-22	53.2
WP_049417451.1\|1057176_1059051_-	DNA polymerase	A0A076YNV1	Mesorhizobium_phage	5.0e-160	48.0
WP_005412416.1\|1059063_1059714_-	hypothetical protein	NA	NA	NA	NA
WP_005412417.1\|1059724_1059973_-	hypothetical protein	NA	NA	NA	NA
WP_004154589.1\|1060138_1061770_-	toprim domain-containing protein	L7TLT7	Rhizobium_phage	3.7e-151	56.6
WP_004154591.1\|1061756_1061936_-	hypothetical protein	NA	NA	NA	NA
WP_080101784.1\|1061932_1062334_-	hypothetical protein	NA	NA	NA	NA
WP_004154593.1\|1062330_1062693_-	putative N-acetylmuramoyl-L-alanine amidase	I6Q9Z5	Yersinia_phage	2.5e-15	40.6
WP_080101785.1\|1062693_1063173_-	RusA family crossover junction endodeoxyribonuclease	A0A2I7QZP6	Vibrio_phage	1.4e-05	31.1
WP_004154595.1\|1063114_1063780_-	hypothetical protein	A0A076YJ33	Mesorhizobium_phage	1.5e-26	40.9
WP_154267700.1\|1063779_1063938_-	hypothetical protein	NA	NA	NA	NA
WP_005412421.1\|1063937_1064222_-	hypothetical protein	NA	NA	NA	NA
WP_005412422.1\|1064214_1064358_-	hypothetical protein	NA	NA	NA	NA
WP_005412423.1\|1064402_1066838_-	DNA-directed RNA polymerase	L7TQW5	Rhizobium_phage	1.5e-164	40.7
WP_099485203.1\|1067401_1068697_+	trigger factor	NA	NA	NA	NA
WP_004146318.1\|1068773_1069400_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	7.7e-57	57.4
WP_004154600.1\|1069526_1070816_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.9e-135	58.0
1080742:1080768	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1134668 : 1153466

Escherichia_phage(33.33%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154329269.1\|1134668_1135742_-\|tail	phage tail protein	D5LGY1	Escherichia_phage	3.3e-92	50.7
WP_049430174.1\|1135732_1135948_-\|tail	tail protein	NA	NA	NA	NA
WP_049430173.1\|1135931_1136399_-\|tail	phage tail protein	A4PE53	Ralstonia_virus	2.2e-08	29.6
WP_099497690.1\|1136401_1138849_-\|tail	phage tail tape measure protein	A0A1W6JT50	Escherichia_phage	3.5e-28	22.4
WP_005412456.1\|1138969_1139260_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.5e-18	58.5
WP_005412457.1\|1139340_1139844_-\|tail	phage major tail tube protein	A0A193GYM4	Enterobacter_phage	1.4e-40	51.2
WP_012479298.1\|1139846_1141049_-\|tail	tail protein	A0A088FVH5	Escherichia_phage	6.1e-127	54.2
WP_099497691.1\|1141155_1141815_-	hypothetical protein	V9IQM3	Stenotrophomonas_phage	6.2e-17	32.9
WP_099497692.1\|1141816_1143784_-\|tail	phage tail protein	V9IQX0	Stenotrophomonas_phage	4.8e-105	39.1
WP_043033669.1\|1143791_1144571_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	9.3e-44	50.6
WP_099497693.1\|1144563_1145460_-\|plate	baseplate assembly protein	V5YTH6	Pseudomonas_phage	1.1e-80	56.1
WP_005408332.1\|1145462_1145801_-\|plate	phage baseplate protein	A0A193GYY8	Enterobacter_phage	7.8e-32	62.2
WP_154329270.1\|1145853_1146444_-\|plate	phage baseplate assembly protein V	A0A193GYL5	Enterobacter_phage	4.3e-25	38.2
WP_005412464.1\|1146440_1146995_-	hypothetical protein	NA	NA	NA	NA
WP_154267725.1\|1147113_1147443_-	hypothetical protein	NA	NA	NA	NA
WP_012479305.1\|1147348_1147726_-	hypothetical protein	NA	NA	NA	NA
WP_012479306.1\|1147722_1148208_-	glycoside hydrolase family 104 protein	D5LH07	Escherichia_phage	5.4e-42	55.6
WP_005408337.1\|1148204_1148555_-	hypothetical protein	NA	NA	NA	NA
WP_005408338.1\|1148551_1149001_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_043033660.1\|1149335_1149719_-	hypothetical protein	NA	NA	NA	NA
WP_154329271.1\|1149871_1150510_-	hypothetical protein	A0A2H4J8A1	uncultured_Caudovirales_phage	5.8e-20	37.6
WP_099481189.1\|1150551_1150779_-	hypothetical protein	NA	NA	NA	NA
WP_111173606.1\|1150853_1151129_-	hypothetical protein	NA	NA	NA	NA
WP_154329272.1\|1151129_1153466_-	toprim domain-containing protein	D5LH15	Escherichia_phage	4.8e-136	43.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040431

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection