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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040437 Stenotrophomonas maltophilia strain PEG-305 chromosome, complete genome 5 crisprs csa3,DEDDh,cas3,WYL,Cas9_archaeal,DinG,PD-DExK 0 1 2 0

Results visualization

1. NZ_CP040437
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040437_1 822816-822924 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040437_2 3170921-3171023 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040437_3 3510319-3510418 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040437_4 3824533-3824641 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040437_5 4011797-4011873 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP040437_5 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder 4011821-4011849 29 CP042595 Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence 248364-248392 6 0.793
NZ_CP040437_5 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder 4011821-4011849 29 NC_006462 Thermus thermophilus HB8 plasmid pTT27, complete sequence 57806-57834 7 0.759
NZ_CP040437_5 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder 4011821-4011849 29 NC_017273 Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence 321912-321940 7 0.759
NZ_CP040437_5 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder 4011821-4011849 29 NZ_CP014142 Thermus parvatiensis strain RL plasmid pTP143, complete sequence 90915-90943 7 0.759
NZ_CP040437_5 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder 4011821-4011849 29 NC_005838 Thermus thermophilus HB27 plasmid pTT27, complete sequence 19873-19901 7 0.759
NZ_CP040437_5 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder 4011821-4011849 29 NZ_AP019802 Thermus thermophilus strain HC11 plasmid pHC11, complete sequence 182045-182073 7 0.759
NZ_CP040437_5 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder 4011821-4011849 29 NC_017588 Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence 177065-177093 7 0.759
NZ_CP040437_5 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder 4011821-4011849 29 NZ_AP019795 Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence 168192-168220 7 0.759
NZ_CP040437_5 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder 4011821-4011849 29 NZ_LR027520 Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence 263352-263380 7 0.759
NZ_CP040437_5 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder 4011821-4011849 29 NZ_AP019793 Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence 197606-197634 7 0.759
NZ_CP040437_5 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder 4011821-4011849 29 NZ_CP045385 Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence 723836-723864 7 0.759

1. spacer 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 6, identity: 0.793

catccccggcggatcccgcgacccgtcca	CRISPR spacer
cgccgtcggcggatcccgcgacctgtccc	Protospacer
*..* .*****************.**** 

2. spacer 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 7, identity: 0.759

catccccggcggatcccgcgacccgtcca	CRISPR spacer
gggccccggccgatcccgcgacccgggcc	Protospacer
 . ******* **************  * 

3. spacer 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 7, identity: 0.759

catccccggcggatcccgcgacccgtcca	CRISPR spacer
gggccccggccgatcccgcgacccgggcc	Protospacer
 . ******* **************  * 

4. spacer 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder matches to NZ_CP014142 (Thermus parvatiensis strain RL plasmid pTP143, complete sequence) position: , mismatch: 7, identity: 0.759

catccccggcggatcccgcgacccgtcca	CRISPR spacer
gggccccggccgatcccgcgacccgggcc	Protospacer
 . ******* **************  * 

5. spacer 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder matches to NC_005838 (Thermus thermophilus HB27 plasmid pTT27, complete sequence) position: , mismatch: 7, identity: 0.759

catccccggcggatcccgcgacccgtcca	CRISPR spacer
ggaccccggccgatcccgcgacccgggcc	Protospacer
 . ******* **************  * 

6. spacer 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 7, identity: 0.759

catccccggcggatcccgcgacccgtcca	CRISPR spacer
gggccccggccgatcccgcgacccgggcc	Protospacer
 . ******* **************  * 

7. spacer 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder matches to NC_017588 (Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence) position: , mismatch: 7, identity: 0.759

catccccggcggatcccgcgacccgtcca	CRISPR spacer
gggccccggccgatcccgcgacccgggcc	Protospacer
 . ******* **************  * 

8. spacer 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder matches to NZ_AP019795 (Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence) position: , mismatch: 7, identity: 0.759

catccccggcggatcccgcgacccgtcca	CRISPR spacer
gggccccggccgatcccgcgacccgggcc	Protospacer
 . ******* **************  * 

9. spacer 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder matches to NZ_LR027520 (Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence) position: , mismatch: 7, identity: 0.759

catccccggcggatcccgcgacccgtcca	CRISPR spacer
gggccccggccgatcccgcgacccgggcc	Protospacer
 . ******* **************  * 

10. spacer 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder matches to NZ_AP019793 (Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence) position: , mismatch: 7, identity: 0.759

catccccggcggatcccgcgacccgtcca	CRISPR spacer
gggccccggccgatcccgcgacccgggcc	Protospacer
 . ******* **************  * 

11. spacer 5.1|4011821|29|NZ_CP040437|CRISPRCasFinder matches to NZ_CP045385 (Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence) position: , mismatch: 7, identity: 0.759

catccccggcggatcccgcgacccgtcca	CRISPR spacer
tgaccccggcggatcgcgcgacccggctg	Protospacer
.. ************ ********* *..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 581185 : 587452 6 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_2 953484 : 1037390 78 Escherichia_phage(19.23%) tail,protease,plate,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage