CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040439	Stenotrophomonas maltophilia strain PEG-141 chromosome, complete genome	9 crisprs	WYL,DEDDh,PD-DExK,csa3,cas3,Cas9_archaeal,RT,DinG	2	2	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040439_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040439_1

22648-22845

Orphan

Consensus_repeat	Method
GCGCCGTGCAGGACGTCAGGGGGTTGCCGGCCAGCGGCCGGCACTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040439_1

>merge|NZ_CP040439|1|22648-22845|CRISPRCasFinder
GCGCCGTGCAGGACGTCAGGGGGTTGCCGGCCAGCGGCCGGCACTACCGGTCAGTCGGGGGCCCTGGCCGGCATCGCGCCGTGCAGGACGTCAGGGGGTTGCCGGCCAGCGGCCGGCACTACCCGTAAATCGGGGGCTCTGGCCGGCATTGCGCCGTGCAGGACGTCAGGAGGTTGCCGGCCAGCGGCCGGCACTACC

>NZ_CP040439|1|1|22648-22845|CRISPRCasFinder
GCGCCGTGCAGGACGTCAGGGGGTTGCCGGCCAGCGGCCGGCACTACC	GGTCAGTCGGGGGCCCTGGCCGGCATCGCGCCGTGCAGGACGTCAGGGGGTTGCCGGCCAGCGGCCGGCACTACCCGTAAATCGGGGGCTCTGGCCGGCATT
GCGCCGTGCAGGACGTCAGGAGGTTGCCGGCCAGCGGCCGGCACTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040439.1\|WP_154351855.1\|24812_27296_+\|DNA-ligase-D	unknown	unknown	gnl\|CDD\|235658
NZ_CP040439.1\|WP_154261803.1\|29049_29688_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NZ_CP040439.1\|WP_005411740.1\|12641_13055_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP040439.1\|WP_154261788.1\|14715_14985_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154261796.1\|23340_23739_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154351856.1\|27925_28954_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_CP040439.1\|WP_088023024.1\|31795_32689_-\|phenylalanine-4-monooxygenase	unknown	unknown	gnl\|CDD\|237020
NZ_CP040439.1\|WP_154351850.1\|13214_14675_+\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NZ_CP040439.1\|WP_154261805.1\|30634_31690_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380487
NZ_CP040439.1\|WP_154261793.1\|19150_20353_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181731
NZ_CP040439.1\|WP_049420916.1\|11388_12150_+\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
NZ_CP040439.1\|WP_014035428.1\|17800_18817_-\|class-1-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236458
NZ_CP040439.1\|WP_005411739.1\|12212_12638_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP040439.1\|WP_154351852.1\|16984_17692_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_CP040439.1\|WP_154351854.1\|23903_24809_+\|Ku-protein	unknown	unknown	gnl\|CDD\|238408
NZ_CP040439.1\|WP_154261800.1\|27367_27760_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154351853.1\|20524_22618_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP040439.1\|WP_049399007.1\|29804_30395_-\|cysteine-dioxygenase	unknown	unknown	gnl\|CDD\|380416
NZ_CP040439.1\|WP_154351851.1\|15838_16930_+\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP040439.1\|WP_099554126.1\|22847_23192_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040439.1\|WP_154351855.1\|24812_27296_+\|DNA-ligase-D	gnl\|CDD\|235658	PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.	0
NZ_CP040439.1\|WP_154261803.1\|29049_29688_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	3.37998e-87
NZ_CP040439.1\|WP_005411740.1\|12641_13055_+\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	1.81107e-37
NZ_CP040439.1\|WP_154351856.1\|27925_28954_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP040439.1\|WP_088023024.1\|31795_32689_-\|phenylalanine-4-monooxygenase	gnl\|CDD\|237020	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.	1.08328e-154
NZ_CP040439.1\|WP_154351850.1\|13214_14675_+\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	3.09696e-143
NZ_CP040439.1\|WP_154261805.1\|30634_31690_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380487	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.16716e-101
NZ_CP040439.1\|WP_154261793.1\|19150_20353_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP040439.1\|WP_049420916.1\|11388_12150_+\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	2.60402e-50
NZ_CP040439.1\|WP_014035428.1\|17800_18817_-\|class-1-fructose-bisphosphatase	gnl\|CDD\|236458	PRK09293, PRK09293, class 1 fructose-bisphosphatase.	0
NZ_CP040439.1\|WP_005411739.1\|12212_12638_+\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	4.50679e-42
NZ_CP040439.1\|WP_154351852.1\|16984_17692_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	2.37503e-09
NZ_CP040439.1\|WP_154351854.1\|23903_24809_+\|Ku-protein	gnl\|CDD\|238408	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.	2.26377e-114
NZ_CP040439.1\|WP_154351853.1\|20524_22618_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.39046e-52
NZ_CP040439.1\|WP_049399007.1\|29804_30395_-\|cysteine-dioxygenase	gnl\|CDD\|380416	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain. This family contains cysteine dioxygenase (CDO; EC 1.13.11.20), which catalyzes the conversion of cysteine to cysteine sulfinic acid, the first step in the biosynthesis of essential oxidized cysteine metabolites such as sulfate, hypotaurine, and taurine. CDO also plays an important role in the regulation of intracellular cysteine levels in mammals; CDO expression is altered in cancer cells, and abnormal or deficient CDO activity has been linked to Parkinson's disease, Alzheimer's disease, and rheumatoid arthritis. CDO is an iron-dependent thiol dioxygenase that uses molecular oxygen to oxidize the sulfhydryl group of cysteine to generate cysteine sulfinic acid. The CDO active site contains an amino acid-derived cofactor. These enzymes are found in prokaryotes as well as eukaryotes and belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.82467e-28
NZ_CP040439.1\|WP_154351851.1\|15838_16930_+\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	1.52492e-26

>NZ_CP040439.1|WP_154351853.1|20524_22618_+|TonB-dependent-receptor
MNPAARHRCLPLSALLLSPWAAVAEPAPTALPAVQVQAARVPGIDPFALPASQDTVWIDASRAGTGAQLSEALAGVPGLLARDRQNFAQDTQLSIRGFGARSTFGVRGVRVLIDGVPATMPDGQGQLSHASLLGAERIEVLRGPFSALYGNSSGGVLQVWSAQGQAGDPWRLRVNAGADNTLSVGAQLKGAGQVLDYNIAANHFRTDGWRDHSRARRESLNARIGGDLGDGRLELLLNALDAPDAQDPLGLTRAQVAADPRQATAVAHQYNTRKTVRQQQVGLRWTRETGAQRWQLMGYAGQRAVRQYLPIPPAPQTNSPLHAGGVIDLQGGYGGLDARWGWHGDLAGRPLDLVAGLSADRQRQHRTGFENFIGSALGVRGRLRRDQIDVVQNVDQFAQAWWQWSPRWSLLAGLRHSAVRFESNDRYIVGANPDDSGHRRYQATTPVAGVSFEASPQWRLHAAVGRGFETPTFNELGYRADGQAGLALDLAAARSRNLEIGSKWHAQDGTQLDISLFRADTDDELAVASNSGGRSTYRNIGRTRRQGVELQYRQPLAEQLELQLAWTWLQAQVRSPYLTSNSVVAAGSRLPGVPRQQAFARLQWSPTDWQWALEVSASTDTVVNDVATARAPGFALLHLEGGRRWTLPGGELRAFARLENVLDQAYIGSVIVNDGNGRFYEPGPGRRANVGLQWSWR
>NZ_CP040439.1|WP_154261793.1|19150_20353_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MSFFANVELVPGDPILGLTEAYNADSRPTKVNLGVGIYYDESGRIPLLRAVKKIEQQLANEAKPRGYLPIDGLPAYTQATRELVFGKDSPLLAAGRVTTAQTVGGSGALRVGADVLKKLLPHATVALSNPSWENHRAVFSAAGFEVVDYTYFDPTTHGVNFDGLLADLGKLEAGTVVLLHACCHNPTGADLTVTQWKQVAQLLKEKQLFPFIDMAYQGFDKGIEQDGAAVRIIAEAGIDSFIVANSYSKSFSLYGERVGALSMVAPTAADAKAVQSQVKRVIRTIYSSPSTHGAALVAGVLTNPELRAMWEQELTEMRERIHALRQGLVEKLAAAGAPQFGFINEQAGMFSYSGLSREQVERLRDEFGIYAVGTGRICVAALNQNNLEYVAKAVATVAKG
>NZ_CP040439.1|WP_014035428.1|17800_18817_-|class-1-fructose-bisphosphatase
MSRTSLTRFLIQEQHAGRINADLRQLIAVVARACTSISIAVSKGALGGVLGDAGTGNVQGEAQKKLDVISNEILLEANAWGGHLAACASEEMDHSQPVPDIYPRGDFLLLFDPLDGSSNIDVNVSVGTIFSVLRCPTNVELPGDDAFLQPGSKQIAAGYCIYGPSTQLVLTVGHGTHAFTLDREKGEFVLTTENMQIPAATQEFAINMSNQRHWEAPMQAYVGDLLAGKEGARGKNFNMRWIASMVADVHRILTRGGIFIYPWDKKDPSKAGKLRLMYEANPMGLLVEQAGGAAWTGRERILDIQPDQLHQRVPVFLGSREEVAEAVRYHHAHDDAQG
>NZ_CP040439.1|WP_154351852.1|16984_17692_-|2OG-Fe(II)-oxygenase
MHEQGPVDFIEVIHNAVPSEVCAAIVERLRATRGLQPGAVGSGVFPELKHSKDLRISGLDGWQDVDQQLQIAVFNGLLTYLRRYPQALIAPLMLQIQDSNGQPRRLSAEDFPDMPQQQLADLARTCLRPGAINLQWYAAGEGGYPYWHCELYPKDAQAETLHRHVLWTLYLNDGFEEGETEFLFQGRKIAPRTGSLLIAPTAFTHTHRGNRPQGGDKFIATSWILFQSAQKLFGG
>NZ_CP040439.1|WP_154351851.1|15838_16930_+|PA0069-family-radical-SAM-protein
MGIAIKGRGSTSHLAGRFESTVSEAVDDGWAVDESEEFLAPRLRTEVRAETARSIISRNTSPDVGFSQSVNPYRGCEHGCSYCFARPSHAYLNLSPGLDFETKLFAKTNAPQLLRKELSKPGYVPQPIALGINTDAYQPIERKFKLTRQLIEVMRETKHPFSLITKNALVERDIDLLAPLAAENLVSVHFSVTSLDPHLSAKLEPRASAPHARLRAMKRLHEAGIPVGVMVAPVIPWINDSELEAVLEAAHDAGASTAGYVLLRLPLEVAPLFRDWLDTHHPDRAAHVMSTIQQLRGGKDYDSQFGTRMRGQGVYADLLNNRFKLARKRLGFNAQNSHWPKLDCSRFQKPLPPKKDSPQGSLF
>NZ_CP040439.1|WP_154261788.1|14715_14985_+|hypothetical-protein
MYWLYLLLALGCFAFALKTPSPGLMTLCLLAALAFLLAWVRGRYVARFGDPQRDPSTLVDAEELRRLREQAQARRGDDSNDHDPSPLSK
>NZ_CP040439.1|WP_154351850.1|13214_14675_+|cardiolipin-synthase
MLALFDSLRHWLDGIAHLGTILAVAYLLYLFALAAWIMLQKREPVATLSWILSLALLPYLGLFIYYLLGPQKVKRQRLRRGRARSGMEHYSDVCPPDADCTELAKIAQATTGLAPSSATEVTWLVDGAATYTALLDAIAQARDHVHLEYYIFNPDHAGTALRDALVERARAGVQVRLLLDAVGSSALPRRFLQPLLDAGGEAIWFHPRQLLKPFKRPWLNLRTHRKLVIVDGRLAFTGGINITDDEDESRRTDAYRDLHMRIRGHVVRSLQLVFAEDWLYASGQDPSRMDIARLWPADMPLRGDGPINAQVLVSGPDSGWETIHRLHVAAIQEAHERVWLVTPYFVPGEAARMALTSAALGGLDVRLLVPKMSDSWFVTQAARSYFDELLHAGVKIYEYGPRMLHTKAFIADDDVCIVGSANFDHRSFRLNFELSMMISDRDRVAALAELLQGEFDRSTRVHDQAGRSLWLHRLPEAFARLASPLL
>NZ_CP040439.1|WP_005411740.1|12641_13055_+|biopolymer-transporter-ExbD
MAFSSGGGKGPMADINVTPLVDVMLVLLIIFIVTAPIMTYPIAVDLPQRVLNPPPQLVEPPPPIELKIDASNQVSWNNSPINTSELQQRMEQEVQRDPTNQPELRIDASPDSEYDVMAKVLAAAKNAQMKKIGFVQQ
>NZ_CP040439.1|WP_005411739.1|12212_12638_+|biopolymer-transporter-ExbD
MAFSSGNSGGPMADINVTPLVDVMLVLLIIFIITAPLMSHKVKVDLPEANLIQKPEDAEKRSGPITLAVKEDGSIYWNDEEINKQTLESRLATAAQQTPQPPLNLRGDRTTKMRVINDLTKVAQEQGMLDVGFVATKEKGQ
>NZ_CP040439.1|WP_049420916.1|11388_12150_+|MotA/TolQ/ExbB-proton-channel-family-protein
MLQEIFIAAAAGGNPSNALSQMGFEHLIHEMTTKPGDFAVSWVVLLTLVIMSAMSWYWTVINIFRATRLKSAADRVVSLFWDTPNAQDAIRAMEEQPASEPFSKIALDAAQAAAHHQRAEGGATGGVGENLSRSEFVDRALRQAVTRESNKLQSGMTLLATVGATAPFVGLLGTVWGIYGALIKIGATGSASIDAVAGPVGEALIMTAIGLFVAIPAVFAFNFFSKINSATISKFDTFAHDLHDFFATGSRVR
>NZ_CP040439.1|WP_099554126.1|22847_23192_-|hypothetical-protein
MSRETSRDPLRENHPPIPGEQRGKRDADNADYRGTGAPFFDAEHAGEHLPVKHEAEQAAQDRKDGGDRHRGGQESPLKRRERKQRASDNQDEALEETFPASDPTSPFVPAKAPD
>NZ_CP040439.1|WP_154261796.1|23340_23739_+|hypothetical-protein
MPRLERPAPSVFNALLDPLGQRTAQRRTRRHEDPQAVAQDYLQYMLSDYEERRGQSHRNWRDLCPVYAFALTTHAADWPRGDAADTCEELAEHWEQMRGQSRLSWSQARPVVEDAWRALDHIPAAAVRPLLQ
>NZ_CP040439.1|WP_154351854.1|23903_24809_+|Ku-protein
MARPIWTGTLSFGLLNVPVSLMSGERKVDLQFRMLDSRDRKPIRFERVNADTGEEVPWKDIVKAYEYDKGSYVVLEEGDIRSAAPESHEAVEMESFVDAAQIDPRYYEKPYLLVPGKKAEKGYVLLRETLRSTGKVGIARVVVRTREYLCAVMPHEDALVLMILRYPQELVDPEDYKLPTGKLSDYRITSKETAMAEQLIESMSGKWDPSHYHDEFRERLQQVLNKRIKSKGGTTRVEDEPAPREDATTNVVDFMALLQKSLDANKRTPAKKTAMRKAPAKKAAKKAAKKAVKKTTRRKAG
>NZ_CP040439.1|WP_154351855.1|24812_27296_+|DNA-ligase-D
MSLHQYRRKRRLGGGAGQTPEPDDTPARGNPKRRPTFVIQLHHASSRHYDFRLEMDGVLKSWAVPKGPSLRVGEKRLAVEVEDHPLSYAGFEGDIPEGHYGAGHVDVFDHGTWACEGDPLQALAAGKIDFVLHGQRLAGGWKLVRTAMKGRQVQWLLIKRGDGEARDAEADDLLTAPTPKRASAAKKRPAAKAARAAPVARTTTRKADARWHARALQLYGARDKPYPLGFKPQLTDHRDSAPDGERWLHEIKWDGYRLLADLHDGEVKLRSRNGLDWTSDFPEVVQAVQALPVRDARLDGELVVLDKEGRSDFATLQRVIDGSSKQPLRYIVFDLPGVAGVDISRAPLLERKALLKDLIGPAPGTMAFSEHVVDHGPQVFDASGEAGFEGIVSKQVDAPYVNTRARSWVKVKHEDTDEFVIVGHTAPKGSRVGFGSLLLATPDKGGLRYVGRVGTGFDDESLRALLRALQPLAVKTPVLQLPAHVPFRAASVRWVKPVTVAEVAFRGWGKEGLLRQASFKRLRSDKQKEDLAMSTTDAGTGDEVQITHPERVVFPKQKLSKGDVADYYQRMARWILPEITGRPLSLLRCPDGVGKACFFQKHHGPGLGDAVHAVPLQQKSGREDYVYIDDTRGLLQLVQMNTLELHPWGATVADPEHPDRLVFDLDPGDGVSWAQVKAGARDVRDRLQQVGLESFVRLSGGKGVHVVVPLQPKAGWDEAKAFCEAFAQAMAEQPDRYVATMSKAKRGGVIFIDWLRNTRGATSVCSWSLRARDSAGVAVPLRWEELARVSAADAFPMAKALARAKRLKGDPWQGIARLKQTLPSLKR
>NZ_CP040439.1|WP_154261800.1|27367_27760_-|hypothetical-protein
MPGLLKTLFLSLVALIGGVLSLALLSSVASWLPPLLGMSPDNNSVQLGWDLAFSVLGGVAGISFATYYAPRWPRSHGFSIWSLIALGCAYAMWTTGADFPLWFVISLLASLPLQLLAGWWFGRRASRDPR
>NZ_CP040439.1|WP_154351856.1|27925_28954_-|alcohol-dehydrogenase-AdhP
MNSTMKAAVVREFGKPLVIEEVQVPRPGAGEVLVKIEACGVCHTDLHAAEGDWPVKPNPPFIPGHEGVGHIVAVGGGVGHVKEGDRVGIPWLYSACGHCEHCLGGWETLCETQRNTGYSVNGGFAEYALADANYVGLLPKEVGFVEIAPVLCAGVTVYKGLKVTDTKPGDWVAISGIGGLGHMAVQYARAMGLNVAAVDVDDNKLALARQLGAQITVNARTTDPAAFLRKEIGGAHGALVTAVSPKAFEQALGMVRRGGTISLNGLPPGNFPLDIFGMVLNGITVRGSIVGTRLDLQESLQFAAEGKVAATVSTDRLENINEVFARMHAGTIEGRVVLDFAA
>NZ_CP040439.1|WP_154261803.1|29049_29688_-|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MSSADPRLRALLKLAPVIPVYTPEDVNEAVEVAQALFRGGLPVIEVTLRTPQALDAIKAMVEAVPDAVIGAGTVLNAAQMQAAKQAGARFAVSPGATPALYAAARDADLPYLPGAATASDLILGLEHGHDTFKFFPAVQAGGAALLAAWHGPFADVRFCPTGGISAQTAPQFLHLPNVLCVGGSWLTTPALLQTRDWDAIERLAREASVLAG
>NZ_CP040439.1|WP_049399007.1|29804_30395_-|cysteine-dioxygenase
MDLQTSPFPVFRGRDRLIAAVDAAMTSGDAERITADLQLALQEAIADSRIELPECVHRPVSDHYARRPLYHSREHGYSVIAMSWGPGQGTPLHDHDAMWCVEGVWSGELEITRYELLERNGERCRFRRHAVLRGGCGSAGSLIPPHEYHTLRNASNEALAISVHVYEAQMERSAVFDPLGGDWYQRRIQALQADPA
>NZ_CP040439.1|WP_154261805.1|30634_31690_+|LacI-family-DNA-binding-transcriptional-regulator
MSVRIISDAALPASKGKAATINDIARLSGVSKKTVSRIINNSPLVRKDTRDKVEALMREVGYVPDPLARGLAFRRSFLIGLVYDDPGAQCIVDLQHGALEALRGTGYELVVHPCDSQAPDCAYGVRRFVQQQKLHGVILGPRASESAALTEMLDGIECRYVRINAHASDDEAQAVVTHDRDGAAAAAGYLLSLGHRDIAVIAGPGDRRTARERTHGFLDRLAQVGLTLPGERVLEAGDTFESGVHAAERLLMGGQRPSAIFAGNDEMAAGVYQVALRAGIAVPQQLSIVSYDDSPLASRLWPPLTSVRRHVSDIGRMAAAMLVQADVPDAPTATSVHPQLMVRGSCRAVDA
>NZ_CP040439.1|WP_088023024.1|31795_32689_-|phenylalanine-4-monooxygenase
MDLAQPRRVEHQQTDKGYVPVYTTALVEQPWDTYSADDHATWSTLYQRQRELLVGRACQEFLDAQDEMGMNAHMIPRFDQLNEVLGAATGWTLVGVEGLLPELDFFDHLANRRFPVTWWIRRPDQIDYIAEPDLFHDLFGHVPLLMNPVFADYMEAYGRGGVKAHAIGPDALQNLTRLYWYTVEFGLIDTPDGLRIYGAGIVSSKGESLYSLESAAPNRIGFDLQRIMRTKYRIDTFQKTYFVIDSFEQLMQATSPDFTPIYAALSDQAHLPAGDVQDDDRVFQAGTGEGWADGGDV

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Crispr_ID: NZ_CP040439_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040439_2

70134-70226

Orphan

Consensus_repeat	Method
TGCCGGCCAGCGGCCGGCACTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040439_2

>merge|NZ_CP040439|2|70134-70226|CRISPRCasFinder
TGCCGGCCAGCGGCCGGCACTACGTGATCCTGGGATGCCGGCCAGCGGCCGGCACTACGTGATCCTGGGATGCCGGCCAGCGGCCGGCACTAC

>NZ_CP040439|2|2|70134-70226|CRISPRCasFinder
TGCCGGCCAGCGGCCGGCACTAC	GTGATCCTGGGATGCCGGCCAGCGGCCGGCACTACGTGATCCTGGGA
TGCCGGCCAGCGGCCGGCACTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040439.1\|WP_004133799.1\|74858_75248_-\|Elastase-inhibitor-AFLEI-flags:-Precursor	unknown	unknown	gnl\|CDD\|288556
NZ_CP040439.1\|WP_154264884.1\|66264_68673_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP040439.1\|WP_107432562.1\|60942_61872_+\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737
NZ_CP040439.1\|WP_132808894.1\|63989_64952_+\|transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP040439.1\|WP_154351863.1\|75359_76418_+\|DNA-topoisomerase-IB	unknown	unknown	gnl\|CDD\|226099
NZ_CP040439.1\|WP_154261833.1\|70228_74683_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP040439.1\|WP_154261835.1\|76405_76714_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154351867.1\|81993_84249_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP040439.1\|WP_005411825.1\|61908_62814_+\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726
NZ_CP040439.1\|WP_154351865.1\|79298_80246_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NZ_CP040439.1\|WP_154261830.1\|65230_66097_-\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|238710
NZ_CP040439.1\|WP_154261831.1\|68658_70104_-\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|273553
NZ_CP040439.1\|WP_154351864.1\|78086_79154_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP040439.1\|WP_154351866.1\|80755_81976_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341038
NZ_CP040439.1\|WP_154261828.1\|62873_63653_+\|DUF45-domain-containing-protein	unknown	unknown	gnl\|CDD\|307807
NZ_CP040439.1\|WP_154261836.1\|76907_78014_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235853
NZ_CP040439.1\|WP_005421068.1\|60656_60860_-\|DUF465-domain-containing-protein	unknown	unknown	gnl\|CDD\|377305
NZ_CP040439.1\|WP_049422412.1\|80379_80766_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_032128690.1\|57919_60556_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	unknown	unknown	gnl\|CDD\|235325
NZ_CP040439.1\|WP_154351862.1\|56969_57920_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040439.1\|WP_004133799.1\|74858_75248_-\|Elastase-inhibitor-AFLEI-flags:-Precursor	gnl\|CDD\|288556	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family. This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.	2.12716e-16
NZ_CP040439.1\|WP_154264884.1\|66264_68673_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	6.80218e-83
NZ_CP040439.1\|WP_107432562.1\|60942_61872_+\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	0
NZ_CP040439.1\|WP_132808894.1\|63989_64952_+\|transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	8.06432e-24
NZ_CP040439.1\|WP_154351863.1\|75359_76418_+\|DNA-topoisomerase-IB	gnl\|CDD\|226099	COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair].	9.9444e-100
NZ_CP040439.1\|WP_154261833.1\|70228_74683_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP040439.1\|WP_154351867.1\|81993_84249_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.28916e-68
NZ_CP040439.1\|WP_005411825.1\|61908_62814_+\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	1.58114e-133
NZ_CP040439.1\|WP_154351865.1\|79298_80246_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.0966e-18
NZ_CP040439.1\|WP_154261830.1\|65230_66097_-\|methylglyoxal-synthase	gnl\|CDD\|238710	cd01422, MGS, Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.	1.05237e-37
NZ_CP040439.1\|WP_154261831.1\|68658_70104_-\|NAD(P)-binding-protein	gnl\|CDD\|273553	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.	0
NZ_CP040439.1\|WP_154351864.1\|78086_79154_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.6465e-60
NZ_CP040439.1\|WP_154261828.1\|62873_63653_+\|DUF45-domain-containing-protein	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	7.87012e-52
NZ_CP040439.1\|WP_154351866.1\|80755_81976_+\|MFS-transporter	gnl\|CDD\|341038	cd17485, MFS_MFSD3, Major facilitator superfamily domain containing 3 protein. Major facilitator superfamily domain containing 3 protein (MFSD3) is a predicted acetyl-CoA transporter. As an atypical putative membrane-bound solute carrier (SLC), MFSD3 is most likely to be functionally active in the plasma membrane and not in any intracellular organelles. MFSD3 belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.47838e-111
NZ_CP040439.1\|WP_005421068.1\|60656_60860_-\|DUF465-domain-containing-protein	gnl\|CDD\|377305	pfam04325, DUF465, Protein of unknown function (DUF465). Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.	7.15778e-09
NZ_CP040439.1\|WP_032128690.1\|57919_60556_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	gnl\|CDD\|235325	PRK04974, PRK04974, glycerol-3-phosphate 1-O-acyltransferase PlsB.	0
NZ_CP040439.1\|WP_154261836.1\|76907_78014_+\|SDR-family-oxidoreductase	gnl\|CDD\|235853	PRK06701, PRK06701, short chain dehydrogenase; Provisional.	1.65563e-164

>NZ_CP040439.1|WP_154261831.1|68658_70104_-|NAD(P)-binding-protein
MSRKHAFQFLDLPRTMPQRIPVELRTSGDWGELYGKFGKEDAQYQAGRCLDCGNPYCSWKCPVHNAIPQWLQLVQENRIHEAATLCHSTNPLPEVCGRVCPQDRLCEGSCTLEEFGAVTIGAVEKYIVDTALASGWRPDLGAVQPTGHSVAVIGAGPAGLACADRLARAGIAAVVYDRYEQIGGLLQFGIPSFKLDKDVIHRRREVLEGMGVQFRLGVEIGRDLSVQQLLDSHDAVFVGTGAYRYTDGGLDGQDLKGVLPALPFLVQNSRIVGGDDPKGRPIAGWEDTIALPDLNGKRVVVLGGGDTGMDCVRSAVRLGAAKVTCAYRRDEANMPGSAREVANAREEGVRFLFNRQPLSIEAGADDEVIGVTVVETRLGEPDANGRQNAVPIEGSESLLEADVVIIAFGFSPTVPAWLAEHGVEGQSNGRIVAGGKDRLPFQTAHPRLFAGGDAVRGADLVVTAVAEGRDAAASIVRLLAH
>NZ_CP040439.1|WP_154264884.1|66264_68673_+|response-regulator
MNVAGFPAAIAVMASLLLPAAASATGCSTPLRIAWPSDRAPLSSSEQGEARGLGAAYLKLLGGQRPLQLLPVPATSVDRDELPAGTQALLGWPRSQLPAGWVVSTPYLQLPQVIVRREDAPPVLGLEDLRGRTVASPSRVPLQGLLAEQAAGAQLLPPAALDDALPLLGTGLIDAVVANLGEVEAALRRYQGDALLIAAPAGFDDALVLATTPVCADVIAGFEQALSQLTDTERDQIRAAWLPDRPRNAPSSSPLRWLVPASLILLALALVHAFGYWRVHRESVRRRRVEQRLQEVTANLPAVVYQARRSAGGHYSFPQIAGDVQALFGISVETARIDHQRLLAAVHPDDRNQVMACVEMAALARGPIDVTFRTRSPQGWRWVRSHGRPLSCDDSDVEWSGYWIDVSEVQSRTRALAEARREAEQAAQAKAHFLATMSHEIRTPMSTLLGMLERLAGSRLEPRQQQVLATVDDAARMLRQILDDVLHSQRLEGAPLQLRPTDLAALVRAVQQLLMPVAASRGLHLQVVLDPEMQPGSLADGLRLRQILFNLAGNALKFTRHGHVELQVQVLQQRDWGQRLRLQVSDSGVGISEERQQAVFAAYTQAERSTTRRFGGSGLGLAICRELAISMGAELQLRSSPGKGTTVWLDLDLDACEAPVAAPAAAGADERPLPAARVLMAEDHPTNLHLLEQHLCALGLQVHACTDGRSALEAWQAQPFDLVITDCHMPGMDGFALARAIRADACPARAQVPIIALTASVMESTREACRAAGIDHFLAKPVEPHALRALLAALLVPDSVGQ
>NZ_CP040439.1|WP_154261830.1|65230_66097_-|methylglyoxal-synthase
MRIGLAANRLHHHDARAALFRWLRSSEAGLRELGVSLHAVGRTHDAIERQGFLTGYAGLHRYPYGREGGLMKLVAEVVGMGPDRTLDGAIYLIDPVDPSSVFPEATALKRQCVIHGKPFISTVATARDWVEVERVHAGLAADAGADDLHAFEGQTLALIAHDAMKPAMLAFADEHFDVLARFGERVATGTTGQRLNELAWSRGWPRDTPWVTRYQSGPMGGDAQIADRVLEGRCQRAIFFEDPHVARQHEADIQLLERAVTTVTDQAVCITAPRVAARWAAAAALRAR
>NZ_CP040439.1|WP_132808894.1|63989_64952_+|transposase
MSDSLDIGVDVDSKEFVPAVADRKAGDRIANTRAGIAQWLNTLPQRCRIGMEATGRYYELLARMAGQAGHVVYVINPRLIKHYGRATGSRGKTDAMDAEAIARYVKKENDRLREYVPRTDEQQQMHDLLRKRQTLVKTRARLEQSFGVSKSAPGELSDLFCALAGTLSELESELQRLGRDGEHGTLYKRLLTIPGIGPAVAAHLIYYMTRWPLANANAWIACTGLDPRPNESGGRTGRRRLSKQGAPVLRQMLYMAAMGLKRCRRGQPLYDELSKRGHPSTAVFNILARKLARIAWGVFKSGRDFDPAMLKVGQACFQQA
>NZ_CP040439.1|WP_154261828.1|62873_63653_+|DUF45-domain-containing-protein
MSRLLRRLISPTPPTTVQRDTVRLRLEDAEIEVLRVRDPRARRIKLSVDERGARLTLPPRASLVMGERFLEQHRDWLALQLRQYQGQGLPAPLQPGEAGVLPLRGELLPLRWQEGRYARLEIDVHGACVQWPTRGGDATLRRLLREFYEAQTRADVGRWLPKYLPTLPRAPSRLRLKVMSSQWGSLAPDGSMALDLALVLGRSEAFEYVLVHELCHLIQPNHSPAFWHEVEQRFPAWREQRDYFQLEGRRLKAMLRQLL
>NZ_CP040439.1|WP_005411825.1|61908_62814_+|recombination-associated-protein-RdgC
MFFRNLTFFRFPTTTDFSEVDTLLPHALLKPVGALEMNSRGFISPFGREEKELLSHRIAEHLWLTVGGEDKILPAAVVNDLLERKLEEIEEKEGRRPGGRERKRMKDDLLHELLPRAFVKSSRNDAFIDLQHGYVAVDTSSRKTGEYFMSDIRGLLGSFPAMPLNAEVAPRSILTGWIAGEPLPTGLSLGEECEMKDPVEGGAVVKCQHQELRCDEIDKHLDAGKQVTKLALIFEDNLSFVIGDDLIVRKLKFLDGALDQLEHADEDGRRAEFDARFALQSAEIRRLFLLLEEAFKLSKAD
>NZ_CP040439.1|WP_107432562.1|60942_61872_+|tRNA-2-thiocytidine(32)-synthetase-TtcA
MEPMSAVISLPDPQPRAARDPRVAEREQHKLAKRLRRQVGEAIADFGMIEAGDKVMVCLSGGKDSYTLLDVLLQLQKKAPVPFELVAVNLDQKQPDFPEHVLPEYLAGLGVPYHIIEQDTYSVVSRVIPEGKTMCSLCSRLRRGALYNYAETHGFTKIALGHHRDDMVATFFMNLFHHAKLSGMPPKLRSDDGKHVVIRPLAYVRESDIVEYAQARQFPIIPCNLCGSQENLQRRQVGLMLKQWEKDHPGRIEQIARAMGEVRPSQLADTTLFDFMALGRRDDAPLPDAHAWLAGSPADADADPETPTV
>NZ_CP040439.1|WP_005421068.1|60656_60860_-|DUF465-domain-containing-protein
MDTYSPAEIVEHLAALRAEHRLLDEQITRMAANGEDELEAKRLKRRKLQLKDCIARLESLQIPDEPA
>NZ_CP040439.1|WP_032128690.1|57919_60556_+|glycerol-3-phosphate-1-O-acyltransferase-PlsB
MAPMSKQNPLPFPGEESQSTPADTVPASPSTGTGPNPVPPPAHARPAGRRPLWARLLGRLVEPWLSLKIEPEDPGQYNDGRPVMYVLEDYGLSNALILDKACRQAGLPSPLVPLAGDPTGRKRAYLALSRRSSSNSLIPEQRGAKTHSDSLAKVLQAHRVRDDLDVHLVPVSIFVGRAPDKQSGWFAVLFSENWALVGRFRRLLAVLLNGRSTIVRFAPPISLRSTVDEGLEPERTVRKLQRVLRTHFRRIRESVIGPDLSTRRLLVDQVLAAEPVREAIAAQAKRDNSKPADAWKKAHAYAWEIAADYSSPVVRSASFMLSHVWNRIYAGVLVHHLDKFKAAAPGHEVVYVPSHRSHMDYLLLSYLLYDRGIVPPHIVAGINLNLPVVGTLLRKGGAFFIRRSIRGNALYSAVLSEYVAQLVAGGYSLEYFVEGGRSRTGRLLQPKGGMISMTLRAFLRQPRKPVLFQPIYIGYEKLMEGGSYLDELSGRPKEKESIWSLLWGIPKVLKQNYGQVVVNFGEPIALNDVLAEKAPEWKGEAVSEDEKPAWLSTTVDTLAERIQVRINGAADVNPINLLALALLSTPKHAMGEADLIAQIELCKTLLVEMPYSDRVTVTPHSPERIIAHAEEINVLTRIKHPLGDVLSVSGDTAVLLSYFRNNVVHLFTASSWVACCFQNNRRMSRTGLVQLGRTVYPFLQAELFLPWSEDEFAQRIDRTIDVFVREGLLQNVNDDDGGILARNTGQTDEVFRLRAIGHSLQQAFERYYIAISVLVKNGPGVLGAAELESLCQQAAQRLSLLYAPAAPEFFDKSLFRGFIQKLRELRLVWPDENSKLLFDERLDAWAKDAKFILGRELRHTIERVSPEAARPDEPAPQD
>NZ_CP040439.1|WP_154351862.1|56969_57920_+|hypothetical-protein
MSVAVRGRSARGWGLAVMLLAVAACREPANDPARPAAEPVAAVQAMALRLAEDDLVGYAKLSVPPSQYQRLQQAWAEGHSQWPLTELPLGGQLLPMLAALRTPNASAELQRSFDRQLAGQAGAVRQAAQSMGTFGVQYLRHQKGYTPGQQAHYIALVETLASWAQGAPISDRARARSTIAALVGAAGKVGFDDEAGLQAAGMEGSLQQLAPFIHTLKAVLGSYGLGVDDALRSVRGELLSVEGDNALVRLHYDLAGREMTLQLPLSRREGHWYLTRTLADTDALLRKADAARAAASLSPAEDPAEGGEAATPSPKP
>NZ_CP040439.1|WP_154261833.1|70228_74683_-|glutamate-synthase-large-subunit
MAPRNRQGLYDPRSERDACGFGMVAQLDDQPSRLLVDTAIAALSRMTHRGGVAADGLTGDGCGLLLRRPDAFLKLLASEAGIAVSARFAAGLVFLPHDADAAQACRAQLQAQVEAVGCKVAGWREVPTDDSVCGQLARDTLPRIEQVFVDAGVGQDDAGFALALFLARRRSEQQLREHADFYVTTLTPDAISYKGMVLPDKLSRFFPDLQRRELASSAIVFHQRFSTNTLPRWPLAHPFRMLAHNGEINTIEGNRRWAQARSKVWKTPRFDIGEFDPVISMHGSDSQSLDNMLELMVAGGMELIQALRILVPPATQSLEFKDPDLAAFYEFHGLNSEPWDGPAGIVACDSRYAVCTLDRNGLRPARWMLTADRHFLVASEAGVWEVPTERVVRKGKLGPGEMVAIDLKRGDLLDSDAVDRINRGRAPYKQWLQQGVTYLQTELIDPSLVEEPFDEGTLRSYHKLYQLSSEEVEQVLRPLAETEQEATGSMGDDTPMAVLSQRSRPLYDYFRQAFAQVTNPPIDPLREDCAMSLSTQLGKETNIFHAGPETVNHVILNSPVLSQRKLRQLLKMDQYVQANRLLDLSYSEDEGLRAGIERICSEAEQAARDGMVMLLLSDRYPVAGRPMVHALLATSAIHHHLSRLGLRCDVNLIVETGTARDPHHMACLLGFGATAVYPYLAYQTLFDLGRRGILKLSKGGEQSQIGRRYRKGVYKGLSKIISKMGICTVASYRGAQLFEIIGLEPEVVDLCFPDTASRIGGAGFARLDADARELCAQAWDAQQDVDVGGLLKYVHGGEYHMYNPDVVTTLQRAARSGDPRAWQQYCDAVHARPPSALRDLLELVPAATPTPLDEVAPASELFPRFDTAAISLGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYGTAQRSKIKQVASGRFGVTAEYLVNAEVLQIKVAQGAKPGEGGQLPGHKVNELIARLRYAKPGIGLISPPPHHDIYSIEDLAQLIYDLKQVNPTALVSVKLVSHAGVGTIAAGVVKAGADLITISGHDGGTGASPVSSIRYAGVPWELGVAEAHQALLANDLRGRTLLQTDGGLKTGLDVVKAALLGADSFGFGTAPMIVLGCKYLRICHLNNCATGVATQDERLRENHFTGQPERVENFFRLLAEEVRGWLSYLGARSLEEIVGRTDLLRQIDAAPRDGVRVDLSRLLADSRYEGSHCAAQRLYESPDSLATQMDGLLAPAIEHKRGGEHRFLIHNTDRSIGTRLAGAVARAHGNQGMAETPLELRFRGSAGQSFGAFNVGGLHLEVEGEANDYVGKGMAGGRLVVRPPRGARFEARSTAIIGNTCLYGATGGELFAAGRAGERFAVRNSGALAVVEGAGDHCCEYMTDGVVLVLGKVGLNFGAGFTGGLAYVLDVDRDFVDRYNHELIDIHRVSAEGFENYRQHLHRLIGRHRELTGSIWAQQILDEFRDYIGKFWLVKPKAASIESLTETLRRAA
>NZ_CP040439.1|WP_004133799.1|74858_75248_-|Elastase-inhibitor-AFLEI-flags:-Precursor
MSFPIRARSLSALLLPAVLALTACQAPALDEQDSATAHAQQAAEAAKAPADEAGKATEAPPVGTCDASQVQSLVGQTYTDALGKQAQEDAGANQVRVLKPNDVATMEFLGDRLNIEVDAKGAVSGARCG
>NZ_CP040439.1|WP_154351863.1|75359_76418_+|DNA-topoisomerase-IB
MPTPSTPERQAARAAGLRYVDDTQPGISRRRAGKGFSYRDADGHAIRDATTLQRIRALAIPPAYTAVWICAHANGHLQATGRDARGRKQYRYHADWAKERDAGKFDRIIAFGEALPTLRRRLSRDLKRPGFPQEKVLAMVVALLADTLVRVGNETYAQQNRSFGLTTLRNRHLELLRGGRVRMRFRGKSGQLQEVTVGDRRLGLLVRRLQQLPGQALFQYRDDDGALQPVDSGAVNDYLREVMGEDFTAKDFRTWGGTVAAVQAFAATELPEPASQRALAQAQRAVVCEVASLLGNTPAVCRKAYIDPCVFAGWERGELARLAGLRGPRQWEQATLRVLRRARRLSRSRQPQ
>NZ_CP040439.1|WP_154261835.1|76405_76714_-|hypothetical-protein
MKHAIATAAVCFALAACSSTPMAQVQPIDGVISGQCHSDMVRGALGLAASDATVARARVDSDSLQVRVLRHDGPRVPPASEGGDRLTIEKGRTNNITAIYCG
>NZ_CP040439.1|WP_154261836.1|76907_78014_+|SDR-family-oxidoreductase
MATTKKAPVRRKASPKVRKGSTATKTAAAPDRPRVVKTATRKAAASDPRAARVAARQRRLQDQEKAKDVRAAKKATKKTATQAGARRQPEAMPAQQLAKPGHEHELELAPRFLAPDYAGSGKLQGMRAIITGGDSGIGRAVAVLFAREGADVAVLHLDEAEDADITRQHVEREGGRCVVIAGDVRDPRFCNKAVKQVAKAFGGIDILVNNAAFQLHCERLEDLEDAHLQETLQTNIGGYIQMARAVLPHLGEGASIINTGSETGIFGSKALIDYSATKGAIHAFTKSLASQLLPRGIRVNCVAPGPVWTPLNPADKPAEDVAEFGKDSDMGRPAQPEELSPAYVFLASPVCASYISGVILPVMGGPRG
>NZ_CP040439.1|WP_154351864.1|78086_79154_-|serine-hydrolase
MLISAMPFAAISASQDQANDQTRRLIRQIMLEQRIPGLQVAVIKDGQIVLSEAYGLANVENGVLASRDTRFPLNSATNAFTGVAAAQLAQQGQLDLDAPASRYLDDLPAAWRDVRVRQLLAHTSGLPDILDANGLLGGGSEAQAWTAVSARPVEAVPGQRFAYNQTNYVLLARIIAQQSGMSYERFLATRQFSSARMARTTFGDSYDLIPDVATMYSLAPRATDAADAPPRLSHWFYDIPPSLWAGGGILTTADDTARWLVALTDGRLLQDAARKRMWTAERLTDGRAGPWAGGWPVLRASPDLQVAGIGGARSAFIVYPDRGVAVVVLTNLVGANPQQFIPRIADLHAPAVTVP
>NZ_CP040439.1|WP_154351865.1|79298_80246_-|helix-turn-helix-domain-containing-protein
MQVYSCAELMSAAHALGGRVDFESGLPDALPVLAGWQQVQSMDSGLVLYLSRSQDMVGGRSQNCLPAGLTASFLLQGQAEVVIANQRLQMDSRRTGSPAMLVHLREEEAFQRHWQAGREETKVSLHLGRDWLSRQLDGIASAGLTRLRLSHARNQAWQPPAPLLRRAAALFGAETAEPPLLANLQRESFALEVAASVVRSVIAEREAPAPSAHLRRCVDQLQQWLQSGEADGLTINQMARRLGTNAVDLQSTFQQLHGSSIAAWLRALRLQRAHDALLQRRVSVDVAASVAGYAHTSSFSAAFKRQFGRSPSRIR
>NZ_CP040439.1|WP_049422412.1|80379_80766_+|hypothetical-protein
MGLVINEAVVLRAVFHGAVDAHQIRYWLDRVQALIDAHRPFYFVASTAPGATFCDDYRALQAVWYKQYKAAFRQYCRGLVRIASDAAEQQRLDTPALHAAWAVPYFVTADAGAGMRWIGEHLEQADAH
>NZ_CP040439.1|WP_154351866.1|80755_81976_+|MFS-transporter
MRTERTAASPFGLGVIVALYMAHALPLYFYNVAVPAILRSQGVDLRWIGMLSLLYLPWALKFLWAPLVDRWHLPALGRRRSWLWLTQLLLLAGILVLAFTGLDHGLVVFVLVGMWISTIAATQDIAIDGYTVEALAPAEHRLGSMAQSVGVALGSMIGGAGVLWLYETRGWSVALLSLAAMSALTLLAVQQINETPARPDAPRPSILRALRRRELRWALLLIVLYRLVEAPAMAMINPLLVDQQFSLTEIGLLISVGGAGTGMLAAVAAAWLLKQRRAEQLLMHAGWWRTVLYVLLALMLYSGAMATSRWGLGALVIALLALRYVAMTSLYALFMRVSSRAQAGTDFTLLVCFELLVNFIGGALSGFLAKGLGYPIYYIALAAVSALGLLLCRPLMRRFAAPIDSP
>NZ_CP040439.1|WP_154351867.1|81993_84249_+|TonB-dependent-receptor
MRQTAATLPLAMLALAISGQLAAQNTSATAGTRQLDAVSVTAVRGARSVAEIAGTVYAIEREQIAQQITAGRSTADILGQLVPSLAPASGTTSNYGMTMRGRSVQVMIDGVPLTGARDGSRQLNSISPTMIERIEVISGATALYGAGASGGIINIITLQPGDQPVQLASQFGLRSPSHLSSDTLAWNAAQTMTVRGDQFSGAFGFAYGRQGASLDAHGRRIGPEIAQTDRQDTETRELNARFDWTPTDSQQLSVGVRWFDDQQDSDHGPDYGPRLAALFNPAFTPSHQALPGLQLEAQPRTRHQGVNAQYRNRDVLGGQELSVEAYYRNEQGRWFPSVSTLVHPALRGGFAYVAMQSNTDIDVWGLRTALHKGFDVAGRSLQLSYGVDHEREQDSQRGQMYDINRFIASNGLDYQPTAQYAMGPDVRVDTTGLFLQADHSLSERFSVQAGVRHQILRNRVEDSLPYTEAITADAVAGYQPHLLRGGRVRHSQTLFNAGVVYRMDASQQLFANVSQGFSLPDTQRMLRDVPASFVIDSRNVGPIKVDSYELGWRRSDASLQSAVTAFYNRSDKTVQFNRDYSVSVADTDERVWGVEANLRYTPTAQLELGASLASTRGQYRDAAGRWRELNAFRVSPLKAGVHGQWRFANDSLLRLQGQVVGGTDRAWRDAPLAAISPSIRATPAAKIHGYAVFDLIGELPLAGGRFSVGIYNLADRDYRTVYGQQAEATYGKMSSLPAAGRTFSIGYRVEY

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Crispr_ID: NZ_CP040439_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040439_3

685595-685694

Orphan

Consensus_repeat	Method
GGTAGGTGCCAACCTTGGTTGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040439_3

>merge|NZ_CP040439|3|685595-685694|CRISPRCasFinder
GGTAGGTGCCAACCTTGGTTGGCACGAAACCGCCGACCAAGGTCGGCTACTACCAGAGCGTGCCATTGCCTCTTCGGTAGGTGCCAACCTTGGTTGGCAC

>NZ_CP040439|3|3|685595-685694|CRISPRCasFinder
GGTAGGTGCCAACCTTGGTTGGCAC	GAAACCGCCGACCAAGGTCGGCTACTACCAGAGCGTGCCATTGCCTCTTC
GGTAGGTGCCAACCTTGGTTGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040439.1\|WP_049399810.1\|693361_695206_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_CP040439.1\|WP_154352002.1\|675457_676543_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|182729
NZ_CP040439.1\|WP_004143635.1\|691675_692122_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	unknown	unknown	gnl\|CDD\|234728
NZ_CP040439.1\|WP_154262311.1\|695202_696711_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NZ_CP040439.1\|WP_154353588.1\|679173_679821_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP040439.1\|WP_005412235.1\|688276_689095_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP040439.1\|WP_065427847.1\|683370_683622_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154262309.1\|692136_693105_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl\|CDD\|234597
NZ_CP040439.1\|WP_154262287.1\|678145_678766_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275096
NZ_CP040439.1\|WP_154352004.1\|686467_688195_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|367906
NZ_CP040439.1\|WP_154262289.1\|679817_680918_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|237587
NZ_CP040439.1\|WP_154352005.1\|689725_690205_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378440
NZ_CP040439.1\|WP_049448901.1\|686109_686505_-\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
NZ_CP040439.1\|WP_005408061.1\|681112_681580_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP040439.1\|WP_049425009.1\|683897_685283_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273050
NZ_CP040439.1\|WP_005412242.1\|693101_693365_+\|cell-division-protein-FtsL	unknown	unknown	gnl\|CDD\|225658
NZ_CP040439.1\|WP_154353589.1\|690563_691352_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377554
NZ_CP040439.1\|WP_080355461.1\|682177_683140_+\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
NZ_CP040439.1\|WP_004143350.1\|674826_675348_+\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
NZ_CP040439.1\|WP_154353587.1\|676578_676974_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040439.1\|WP_049399810.1\|693361_695206_+\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	1.98236e-169
NZ_CP040439.1\|WP_154352002.1\|675457_676543_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|182729	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD.	1.0291e-134
NZ_CP040439.1\|WP_004143635.1\|691675_692122_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	gnl\|CDD\|234728	PRK00326, PRK00326, transcriptional regulator MraZ.	2.46988e-55
NZ_CP040439.1\|WP_154262311.1\|695202_696711_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0
NZ_CP040439.1\|WP_154353588.1\|679173_679821_+\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	7.83168e-107
NZ_CP040439.1\|WP_005412235.1\|688276_689095_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	5.3592e-126
NZ_CP040439.1\|WP_154262309.1\|692136_693105_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	2.24591e-168
NZ_CP040439.1\|WP_154352004.1\|686467_688195_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|367906	pfam04348, LppC, LppC putative lipoprotein. This family includes several bacterial outer membrane antigens, whose molecular function is unknown.	3.95902e-109
NZ_CP040439.1\|WP_154262289.1\|679817_680918_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|237587	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	8.51415e-179
NZ_CP040439.1\|WP_154352005.1\|689725_690205_-\|hypothetical-protein	gnl\|CDD\|378440	pfam10517, DM13, Electron transfer DM13. The DM13 domain is a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme.	6.5247e-19
NZ_CP040439.1\|WP_049448901.1\|686109_686505_-\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	1.64922e-48
NZ_CP040439.1\|WP_005408061.1\|681112_681580_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	2.35607e-67
NZ_CP040439.1\|WP_049425009.1\|683897_685283_-\|FAD-binding-protein	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	1.58122e-136
NZ_CP040439.1\|WP_005412242.1\|693101_693365_+\|cell-division-protein-FtsL	gnl\|CDD\|225658	COG3116, FtsL, Cell division protein [Cell division and chromosome partitioning].	5.9001e-29
NZ_CP040439.1\|WP_154353589.1\|690563_691352_-\|hypothetical-protein	gnl\|CDD\|377554	pfam05742, TANGO2, Transport and Golgi organisation 2. In eukaryotes this family is predicted to play a role in protein secretion and Golgi organisation. In plants this family includes Solanum habrochaites Cwp, which is involved in water permeability in the cuticles of fruit. Mouse Tango2 has been found to be expressed during early embryogenesis in mice. This protein contains a conserved NRDE motif. This gene has been characterized in Drosophila melanogaster and named as transport and Golgi organisation 2, hence the name Tango2.	1.66991e-82
NZ_CP040439.1\|WP_080355461.1\|682177_683140_+\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	5.65892e-135
NZ_CP040439.1\|WP_004143350.1\|674826_675348_+\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	5.26754e-86
NZ_CP040439.1\|WP_154262287.1\|678145_678766_-\|hypothetical-protein	gnl\|CDD\|275096	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family. This family consists of proteins closely related to Ax21 (Activator of XA21-mediated immunity), a protein that is secreted by a type I secretion system (RaxABC), and that appears to be sulfated on an N-terminal region tryosine in a motif LSYN. Ax21 acts in a quorum-sensing system. Homologous peptide-mediated quorum-sensing systems appear to exist in other species, such as the emerging opportunistic pathogen Stenotrophomonas maltophilia. Intriguingly, the rice genome encodes a receptor (XA21) for this protein that triggers innate immunity. [Cellular processes, Pathogenesis].	4.02878e-21

>NZ_CP040439.1|WP_049425009.1|683897_685283_-|FAD-binding-protein
MSPALPAALVAELSALLGAEGWRMDDGALEANAQDNSWRHQRPAAVALPADIEQVQALVRACRAHGVALVARGAGTGTTGAAVPLPGSIVLSFTRMDRIVEIRAGDRCAVVQPGVLNGALQQALAPHGLFWAPDPSSAEICSIGGNLACNAGGPRAVKYGTSRDNVLGLVAVTGTGDVIRCGGAYTKDATGYDLTHLLVGSEGTLALIVEATLKLTPLPVSQAGLRVLYRDADAAAAAVSRLMSQPVVPTRLEFMDARSLELLRLNGADVPEAGAMLLVEADGDHDTLPYLLQALASAAEGDGMIELDVAMEGRARDQLWAARKALSPALRSVAPGKINEDVVVPVSRIPDLVAGVQALAREYTLTIVTFGHAGNGNLHVNILYHPDDADENARAHAALPKIFELTLALGGTLSGEHGIGLAKRDFMAKAFTAETLATMRAIKAALDPGGILNPGKVLPPV
>NZ_CP040439.1|WP_065427847.1|683370_683622_-|hypothetical-protein
MATAERVGSKQQRPRPANKDAEMYKPLYPHVITTLGEAAARLPHDLAPILEQALAAVNDARSLATVTCESCLQQRRGRQPQAD
>NZ_CP040439.1|WP_080355461.1|682177_683140_+|thiamine-phosphate-kinase
MSLAEFALIDRIRARTLERDDILLGIGDDAALLQPRANEQLVVTADTLNSGVHFPVETPAFDIGWKTLAVNLSDLAAMGARPAWCTLALSLPEASEDWIDAFADGFFALADQHDIALIGGDTTRGPLSLSVTAMGQVGRGQALRRDRAQAGDDIWVSGTLGDAAGALRLWQQAALSIATATLLADYESLRLRLLRPTPRVTLGLRLRAFAHAAVDVSDGLLADLGHITRRSNVAAHVDADSLPISRALRELLSRDGARDCALRGGDDYELCFTAAADQRDALHYLAESLDVPLTRIGRIAEGQGVHVDGEAADGGYQHFV
>NZ_CP040439.1|WP_005408061.1|681112_681580_+|6,7-dimethyl-8-ribityllumazine-synthase
MSHFEGDLRTPESARFAILASRWNARITDTLVAGARQSLAGNGITEANIDVIRVPGAWELPLVAARLAAAHEHAAILTLGCVIRGDTRHYEHVADRCAEGLMRVQLDFGVPVLNGVLAVERVEDAEARAGGSHGNKGEEVALAALEMVNLLEQLP
>NZ_CP040439.1|WP_154262289.1|679817_680918_+|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MNFAPIPEILEDIRLGRMVVIVDDEDRENEGDLIMAAELVKASDINFMVTHGRGLVCLPLNRTRAADLGLAPMVQANTAQFQTNFTVSIEAAEGVTTGISAHDRAHTIRTAVKPNAKPADLHQPGHIFPLIAQPGGVLTRAGHTEAAVDMAMLAGLEPAGVLVEILNPDGSMARRPELEVFAREHGLKMGSIADLIAYRLATEKTVERVDERDIDTEFGPFKLLTYRDRIAHDLHFALVRGTPDAETPTLVRVQVENPLADLLHWRRDDFGVAATDALRAIDAEGAGVMVVLQAPRDGEALLARLRQQPAPVVPGKDKDVSQWRRNGAGAQILSDLGLGKLRVLGTPRRQIGLAGYGLEVVETVTL
>NZ_CP040439.1|WP_154353588.1|679173_679821_+|riboflavin-synthase
MFTGIIEGVGRLAARESIGGDVRFTFNVGNLPFDNVQMGESIAINGVCLTVIAFDASSFQADASTETLGLTTLGQLGEGAVINLERAMRPTDRLGGHLVSGHVDGLGQVLSIHEDARAQRWRFAAPASLRRYIAKKGSICVDGVSLTVNEVDDEGFEVALIPHTVANTAFSAAGVGSAVNLEIDLVARYVERLISVPTSGQHPPANGQHPHGDAA
>NZ_CP040439.1|WP_154262287.1|678145_678766_-|hypothetical-protein
MRKILIAAALLAAAPFSASADALSYTYVEGGWTQVKVDDNALDDPKVDGGYLRGSVAVAEQVYVFGGWSRTSKTYHYSDGSLKIELNQPELGIGYHMPWTDRVDFTADIAWVRQNAELTDRYDGYSDRYKDHTNLARVTMGIRGKPSRMTEAWAKAGYMDGGNNYKGTWVGTVGGQINFTKTWGVVGEIAGYRDVTQYSVGVRASF
>NZ_CP040439.1|WP_154353587.1|676578_676974_-|hypothetical-protein
MKHRTTSTMVMLLTLLALVACGQAKAPKSRITTFSVIPAGAFESTLLSDRQLDAWMSEDDDCHAFLMYHDQCAVLVLPHEYDDGFTRHQLRLKAKNLPGEALGAYCRNLHALWKQQWKGQCPVGEEDDEEA
>NZ_CP040439.1|WP_154352002.1|675457_676543_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MTTPFSVLDHLHMANALRLAERAAYTTRPNPMVGCVIAHGERLVGQGWHQRAGGPHAEVFALREAGSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRNAGIEVAEGLMAAQAREINKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAREDVQHWRARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLRSLECSRVREGGAPTLYLHDAAVSAPDAADAEFASVPSVDGRLDLGAVLALLAERGINEVHTEAGATLAGALLRGGWVDELLLYQAPTLLGDTGRPLLAGLGIEAMDQQRRLRVVDQRQVGEDIRLLLRP
>NZ_CP040439.1|WP_004143350.1|674826_675348_+|transcriptional-repressor-NrdR
MHCPFCQHADTRVIDSRVSEDGATIRRRRECEACGERFSTMETVELKLPAIVKSDGTREAFDQRKVRAGFDRALQKRAVAEDKIEAAVRAVVHQLRISGEREVPSIKVGEFVMNELRKLDHVGYVRFASVYRSFEDVADFREEIEKLERDLPSSTEQLQLLGDVIALTKKKKG
>NZ_CP040439.1|WP_049448901.1|686109_686505_-|YraN-family-protein
MAAGRCRSSVVAERSQRGSAVEAAAEQHLQQAGLQPRARNVRYRGGELDLVMDDAGTVVFVEVRYRARSDFGGGAASVDARKCRRLAHAAQLYLQDNPALANAPCRFDVVDATGEPPQLRWLRDAFRLDDC
>NZ_CP040439.1|WP_154352004.1|686467_688195_-|ABC-transporter-substrate-binding-protein
MNKPAARISALSLSLSLMLLAGCATTSLTSTPDSPAQSQALALIEQGKPRDAALQLEGLAATLRGGARSNALADAAWAWHLAGDSARAGSLLGQLTARQLSGASLQRYQLTGAELALADKQPAQALALLKDHGDNVLPTLRTRWYLARANALQGTGDAFGAATERARAHASLTGSARSENQAAIAGLLGTLDDATLRSRAAALPANDPLYNFAGRALIARGLPLPRPFDRDGAAQFDTSKRPPAMSDGYRPPAKLAVLLPLSGRLATAAQPVRDGMLSAYYGESRRRPDINFFDTAGTPAGALAAYDKAVASGADFVVGPLGRDEVDAVYGRQQLQVPVLALNRGKDAPPAGSAGFSLAPEDDGIVAAEYLRGRERNRALVISSNDDTGRRSAAAFAQRFAQRGGQVVATVNVSEAVGDVGAQVRNAGQVDAVFLAVRAPQARLLAPQLALAGAGGATRVGTSQLTVGSGKVEEDVALDGIVYPNEAWNVRSVSGLPSASQVASALPSARGAAGRLFAFGADAWKITAYLDKLSNEGGLDGATGTLFLDSNGNILRQPAWSTFSGGRPMPIVGGR
>NZ_CP040439.1|WP_005412235.1|688276_689095_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MSVPTLYVVATPIGNLADLSPRAQEVLRSVAAICAEDTRRSGQLLSHFGIQQPLVALHEHNEEALAQRLVSRLQAGESLALVSDAGTPLVSDPGFRLVRAARAAGIKVSPIPGACAAIAALSVAGLPSDRFSFEGFLPAKASGRRDRLQALAGEVRTMVFYESSHRIAESLADMAAIFGGERPAVLARELTKLFETVLDGDLAGLLAKVEADENQRKGEFVVMVQGAGDDEEAQLAHGRRVYAKLSEHLPPSTAAKLAAELTGAPRKALYGS
>NZ_CP040439.1|WP_154352005.1|689725_690205_-|hypothetical-protein
MRRILILIVTHLLTLGLGFGLGVYFLPILIAPDDPPVAQVQAAMTDAPYRTTFRRDLKGSDAVHWAEGKISVSPRQVAFDGKMGPGPDYKVYLVRDFVDNKADFLKIKAQAKRIGEVKTFNRFLVDVPDDVNVDDYTTVVVWCERFSQFISAGQYRTPG
>NZ_CP040439.1|WP_154353589.1|690563_691352_-|hypothetical-protein
MCLLALGWMHHPRWRLVMTGNRDEFHARPTAALAPWQDETSVIGGRDLRSGGGWAGVGASGRMAVVTNVRDPLAAQTGPSRGALVADFLRGRDPAAVHIDRLATVAGAYAPFNLLLADGRSLEFLGNHPAERQSLGPGVHGMSNGALDAPWPKTRRLMAALEAWLQEDRVRSLSQSERDLTPDLTPLWAALADEHRPADSDLPDTGIGLERERWLSPAFIRGDDYGTRASTVLLIDADGHGEIHERRFGPQGAANGQSHVIF
>NZ_CP040439.1|WP_004143635.1|691675_692122_+|division/cell-wall-cluster-transcriptional-repressor-MraZ
MFQGETAITVDDKGRMAVPTAYRDLVARASNNRLVLTYNPFEAGCLWLYAESEWERVRDDVMSKPNTQRVVRLLQQKLVGSAAHLELDGNGRISIPASHRGAVGIEKKAVLLGMGDKFELWSEQAHRALIQQTLSDEDLGDGLLDLKL
>NZ_CP040439.1|WP_154262309.1|692136_693105_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MRPEAQAGHLPVSQSPAVHLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDPEAIAVAERDFAPDPRVSIFRGSFAQLLQWDATAEGLDGVLFDLGVSSPQLDVAERGFSFGKDGPLDMRMDPDSGESAAQWINRVEEREIADVLWTYGEERQSRRIARAIVARREKQPFTRTAELAELIASVMPRGKDKIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLAIISFHSLEDRIVKQYMNRLAKAPPANRRLPEAEVFVPTLDLIGGAIKATDEELAANPRARSAVLRVAQKREADA
>NZ_CP040439.1|WP_005412242.1|693101_693365_+|cell-division-protein-FtsL
MSRLLLIILLASTVASAIGVVFVRHRHRQTFIELSRAERKRDDINLEFGRLQLEQATLAEANRVDRIAREKLGMKFPEAADIVVVRP
>NZ_CP040439.1|WP_049399810.1|693361_695206_+|penicillin-binding-protein-2
MSKTGRNRPRNAFNLRQRLRWVALALGLCSVSLVGRAAYVQIINSDFYQRQGEARYLRELPIKTSRGMITDRNGEPLAVSTPVASIWVNPQDLLRSPERIPELAQAVGMSVDELSSRLSQKSDKEFMYLRRRINPDEAEKVVALKIPGVAAQREFRRFYPQGEAMAHVLGFTNIDDRGQEGLELAFDEWLRGKAGAKRVIRNRKGETVESDLLRAAEPGKDLTLSIDRRIQYLAFKELRNALVANKAAGGSMVIMDVTTGEILAMVNLPTYNPNSLTGALPDARRNRAVTDLVEPGSTMKPLTIATALQAGAVTKDTIIDTNPGYMQVARFTIRDVPRNNGVLNVTGVITRSSNIGAAKVAAKMPDQVFYDGVRRFGYGSVPHSGFPGESGGVVRRPANWDGATKTTMSYGYGLNVTPLQIATAYSALANGGKLIAPTFVKGQRNEAHQIIDESVARQVVAMMETVVTQGGAKQAAVLGYRVAGKTGTARKTGPGGYERGHYNALFAGVVPATNPRFATVIVINDPQAGKFYGGLVSAPVYHNVMEGTLRLMDVPLDDLQSWLAAQQSGKVGHSASILPAPPAEAALPVDAAAEFDAALPSAQAQTPPATGGTQ
>NZ_CP040439.1|WP_154262311.1|695202_696711_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MSPSMLLSQLLPDVALAGHDPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGAGVILFEPPAPADLPAPADAIAVPGLRARMGAMADQFHGAPSRAMAMVGVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGSAEPTGFTTPLVLQMHALLAQLRDAGARAVAMEVSSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHRPGLKAAVVNLDDAFGRQLFAGLPAGVQPIGLSSRGVTDASVRAEALQLDGRGIAFELVIDGQRAAVQSPLLGRFNVDNLLAVAGTLHAQGQPLPRIAEVLSALQPIRGRMNRLGGEDGLPTVVVDYAHTPDALEQALDSLHGHLQGTLFCVFGCGGERDTGKRPQMAAIAERLANQVIVTDDNPRGEDGDVIVADILAGFTDASAVTVQRSRARAIGLAVKRAGAGDIILIAGKGHEPYQEVNGVRHDFDDTEVAAAALAAKAGVLSAQAGEGIA

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Crispr_ID: NZ_CP040439_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040439_4

749718-749944

Orphan

Consensus_repeat	Method
TCGGTGATCGCACACCGCATCCACGCATGGCGTGGATCTACCGTGCCGCATATCCACTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040439_4

>merge|NZ_CP040439|4|749718-749944|PILER-CR
CCGCATCCACGCATGGCGTGGATCTACCAACCCCTGCTTCCGGTAGGTGCCGAGCTTGCTCGGCACGCTCTTCGTCGGTGATCGCACACCGCATCCACGCATGGCGTGGATCTACCGTGCCGCATATCCACTTCTGGTAGGTGCCGAGCTTGCTCGGCACGCTCTCCATCGGTGATCGCACACCGCATCCACGCATGGCGTGGATCTACCGTGCCGGATATCCGCTT

>NZ_CP040439|4|1|749718-749944|PILER-CR
CCGCATCCACGCATGGCGTGGATCTACCAACCCCTGCTTCCGGTAGGTGCCGAGCTTGCTC	GGCACGCTCTTCGTCGGTGATCGCACACCGCATCCACGCATGGCGT
GGATCTACCGTGCCGCATATCCACTTCTGGTAGGTGCCGAGCTTGCTCGGCACGCTCTCCA	TCGGTGATCGCACACCGCATCCACGCATGGCGT
GGATCTACCGTGCCGGATATCCGCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040439.1\|WP_154262352.1\|741617_742916_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP040439.1\|WP_032129924.1\|757935_758331_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|260133
NZ_CP040439.1\|WP_154262355.1\|747614_748541_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154264905.1\|743109_744081_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381369
NZ_CP040439.1\|WP_154352016.1\|759336_760497_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP040439.1\|WP_154262360.1\|753854_754499_+\|arylesterase	unknown	unknown	gnl\|CDD\|238860
NZ_CP040439.1\|WP_154262358.1\|753131_753779_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226647
NZ_CP040439.1\|WP_154262354.1\|746941_747541_+\|Hemin-transport-protein	unknown	unknown	gnl\|CDD\|226243
NZ_CP040439.1\|WP_086016257.1\|754553_755300_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP040439.1\|WP_154352013.1\|749314_749716_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154352014.1\|750025_750517_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_005412278.1\|744345_744540_+\|hemin-uptake-protein-HemP	unknown	unknown	gnl\|CDD\|378463
NZ_CP040439.1\|WP_154352012.1\|748797_749328_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_032129926.1\|755455_756727_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP040439.1\|WP_154262347.1\|740046_740478_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154353591.1\|744729_746937_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP040439.1\|WP_154352015.1\|750618_753135_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225669
NZ_CP040439.1\|WP_154352011.1\|740626_741592_-\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NZ_CP040439.1\|WP_154262362.1\|757022_757724_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239946
NZ_CP040439.1\|WP_106467106.1\|758362_759112_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930

Protein	Function_ID	Function_description	E-value
NZ_CP040439.1\|WP_154262352.1\|741617_742916_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	1.63157e-142
NZ_CP040439.1\|WP_032129924.1\|757935_758331_+\|diacylglycerol-kinase	gnl\|CDD\|260133	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase. This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of diacylglycerol to phosphatidic acid. Escherichia coli DAGK participates in the membrane-derived oligosaccharide cycle (MDO cycle) by recycling lipids to restore phosphatidylglycerols that were used up in the biosynthesis of MDOs. DAGK also recycles diacylglycerols that are produced during the biosynthesis of lipopolysaccharides (LPS) back to phospholipids. DAGK is not the main source of phosphatidic acid in de-novo biosynthesis of glycerophospholipids. Escherichia coli DAGK has low activity as an undecaprenol kinase.	3.25442e-49
NZ_CP040439.1\|WP_154264905.1\|743109_744081_+\|aldo/keto-reductase	gnl\|CDD\|381369	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR). Voltage-gated potassium channel subunit beta (KCAB) from Arabidopsis thaliana and Egeria densa are founding members of aldo-keto reductase family 6 member C1 (AKR6C1) and C2 (AKR6C2), respectively. KCAB, also called Shaker channel b-subunit, or K(+) channel subunit beta, or potassium voltage beta 1, or KV-beta1, or KAB1, is a probable accessory potassium channel protein which modulates the activity of the pore-forming alpha subunit.	0
NZ_CP040439.1\|WP_154352016.1\|759336_760497_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	2.79685e-80
NZ_CP040439.1\|WP_154262360.1\|753854_754499_+\|arylesterase	gnl\|CDD\|238860	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.	8.22993e-87
NZ_CP040439.1\|WP_154262358.1\|753131_753779_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226647	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	7.39401e-96
NZ_CP040439.1\|WP_154262354.1\|746941_747541_+\|Hemin-transport-protein	gnl\|CDD\|226243	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism].	0.00207585
NZ_CP040439.1\|WP_086016257.1\|754553_755300_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.31743e-76
NZ_CP040439.1\|WP_154352015.1\|750618_753135_-\|FtsX-like-permease-family-protein	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_CP040439.1\|WP_005412278.1\|744345_744540_+\|hemin-uptake-protein-HemP	gnl\|CDD\|378463	pfam10636, hemP, Hemin uptake protein hemP. This is a bacterial family of proteins that are involved in the uptake of the iron source hemin.	2.47066e-16
NZ_CP040439.1\|WP_154262362.1\|757022_757724_-\|hypothetical-protein	gnl\|CDD\|239946	cd04502, SGNH_hydrolase_like_7, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.	2.76039e-79
NZ_CP040439.1\|WP_032129926.1\|755455_756727_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.18063e-49
NZ_CP040439.1\|WP_154353591.1\|744729_746937_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.00387e-125
NZ_CP040439.1\|WP_154352011.1\|740626_741592_-\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	6.76315e-100
NZ_CP040439.1\|WP_106467106.1\|758362_759112_+\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	4.63731e-67

>NZ_CP040439.1|WP_154352013.1|749314_749716_+|hypothetical-protein
MRFADARGRAPGVRNLPARSAVHDRLEQHFLDAFTAGIRAANLRAEDFRSPHYNVFFVDGTKDREANPIFSAKHLISGNIVRIVIFESPPDYTEVHNRVGDDNAKDELCVFTTLSGIQRAMDTTVAWAKQQAL
>NZ_CP040439.1|WP_154352012.1|748797_749328_+|hypothetical-protein
MKLSEICSQLLSGEACDDIDSFHLEIDDFEEVELVSRLSRIDGVLERLGPRWTSAYLLSLCSHVLSTVRISGRARDSADAKMFLALSFTDFELHAQEGILLPSVFYYPGPEGVAFGSHRRHESDRAASAEIDIVRSVFEDAGMLAGFRFCESRTDGPPGHDVVRVFAIPLVENEVR
>NZ_CP040439.1|WP_154262355.1|747614_748541_+|hypothetical-protein
MKLQTASALLLLAASGVASAQPSDIARDHDSILAMQGEYTVDFAFDETVLLKPGYERAPAMRSGGSEVVIVVEDTPKRIVLQHLLLDEKSGHITKHWRQDWVYEAPNRFEFSADQTWKVRSIPAAVNQGAWTQCVYEVSDAPRYCGTGKWTYTNNVPSWSSDLSWRPLPRREYTKRSDYNALAVINRHTLTPNGWTHEQFNTKVQRNADGSQVEIAREFGFNDYVKTTEVDFTPARNYWKATAGYWAKVRQRWDGFLGQAPGVHLKTKIDGMAMIIPLFTQAEEIQAGKKVKDKQIDDVFAKYVEKAQ
>NZ_CP040439.1|WP_154262354.1|746941_747541_+|Hemin-transport-protein
MSRALSARRNDSIAAPYSAAWPTPAQLATLGTVLCLYHADGNELGGWRQAVRVHACQGVDSEGLRESLCFLDGRGRCVWRLYLLPDSDFLAWDRLVAALPPGPEHDSDGSVGERLWRRLAGHLGGQRWRLCALRLHAADDGRTLAASLSTLSSLGAATARRIARLEGAEGELAIDDCCCADAARRPASRIPGDLPLIRL
>NZ_CP040439.1|WP_154353591.1|744729_746937_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MALPLSAHAAAAAAPDAREFDRVQVTATRTERAVSDVAATVDVIDREQMDRHLVQDIKDLVRYEPGLSVTRSATRFGLDGFRIRGLDGNRVRIQTDGIVMPTRFDIGSFASSNRNFTDLDTLKRVEIVRGPASSLYGSDALGGVVAFVTKDPADYLKDGKNSYFGLKFGYDGEWKGLLGGATAAFGGEHWSGLVNVNHHQGQETDNKGTVRSDNDTRTASNPQDRDGRSLLSKLVYAPSEDQRFRLTVEGNEDTTDTNVLSAIASVAPRPGALAAATGMKSHDTQKRTRVSFAHEMDALDQPFADSLHWQVYAQNSETRQQTDETRTDGSRRHRVFSFDQHAYGLQAQFNKAFSTGSVEHALTYGFEGTRTEIRQKRDGYQVNRAGVVSNTVTPDTFPVRDFPISKTTELGLYAQDEMRLADGKLSLVPGVRVDRYELKPEVDSIFAEDNPTTAVAQLKKTSVSPKLGMVWRFTDQWSLFAGYARGFRSPPYNDVNIGLTNVAFRYTAIANPDLKPETSDGYELGLRFIAPAAYVSVSGYYNDYKDFIESNVDTGRNAQGLTVFQSQNIADARIYGAEMKAGIEFGELSPALKGWALRSALAWSRGDNRTDDEPLASVDPLRGTLGLMYDTDTWGVELAGTFVQRKKRLPPPAAQTNPNAPAPFVYQPAGYGVLDLMAHWNFAPGATFNVGVFNLADKRYIEWSSITPSLITNRALSDRYSSPGRTFSASLAVSW
>NZ_CP040439.1|WP_005412278.1|744345_744540_+|hemin-uptake-protein-HemP
MNAQPVLLRPETLTLRDRPVRVVPPEEVIDSEALLKGRREILIQHGDRFYRLRHTSNDKLILTK
>NZ_CP040439.1|WP_154264905.1|743109_744081_+|aldo/keto-reductase
MQYRRLGSTGLPISALSFGAWVTFGDQVPRDEARNLVAAAWDHGVNFFDNAEGYANGRAEQVMGDVITDLRLPRDGFCVSSKVFFGSAKDPRPTQRGLSRKHVTDACHAALKRLRVDYLDLYYCHRPDPDAPIAETVHAMDTLVRQGKILYWGTSEWSAAQIQQALDIAEAHNLQGPSMEQPQYNLLHRERVEVEYAPLYARAGLGTTIFSPLASGLLTGKYDQGIPADARLGREGMEWLQDLVLGADAGARLGQVRRFSEVARALGHAPATLAIAWCLRNPNVSSVILGASQVSQLLQNLQALDVLEQVDAAGWAQVEAVFA
>NZ_CP040439.1|WP_154262352.1|741617_742916_-|NupC/NupG-family-nucleoside-CNT-transporter
MVEGLGRIGFGLFGLAVLIGITWLFSNNKRAVDWKLVATGITLQIAFAALVILVPGGRDVFDALGKGFVKILSYVNEGSGFIFGSLMDTKNYGFIFAFQVLPTIIFFSALMGVMYHLNIMQAIVRVMAWSITKVMRVSGAETTSVCASVFIGQTEAPLTVRPYIARMTQSELLTMMIGGMAHIAGGVLAAYVGMLGGGDPAQQAFYAKHLLAASIMAAPATLVVAKLLIPETGTPLTRGTVKMEVEKTSSNIIDAAAAGAGDGLKLALNIGAMLLAFIALIALLNAPLTWIGDVTGLAAAIGKPTNLSTIFGYVLAPIAWVIGTPWADATTVGSLIGQKVVINEFVAYTELSQIVNGQIAGVSLSDEGRLIATYALCGFANFSSIAIQIGGIGGLAPERRHDLAKFGLRAVLGGTIATFMTATIAGVLTHFS
>NZ_CP040439.1|WP_154352011.1|740626_741592_-|ribokinase
MSSSVVVVGSFNVDHVWRCESLPAPGATIAGRYSTGPGGKGFNQAVAACRAGADTHFVCALGDDAGGATARELAAQDGFGLIAEASSEPTGTAGIYVDARGRNTIVIGPGANAALSTDFLQQQQALLTHAKVVLVQLESPVQTIEAALATAREAGVTTVLNTAPADAPSTIGLLKLADVITPNETEFAALLGRHVGERVDANDVAALDGASLHALCRKLVGNGTVVVTLGSVGVFVSHADENLRGDTQPYYRVGAEQVQAIDTTGAGDAFNGALAASLAQVADAPFARHVRFANQFAGRSTEKEGAAAAMPRFTPADVEVK
>NZ_CP040439.1|WP_154262347.1|740046_740478_-|hypothetical-protein
MDGFPWLLVAAAGSAIAALLHIGCIAFGAPWYRWFGAGPRMVRLAQAGHWWPPLMTAGITAVLVAWTLYALAAAGWHSPLPASRPVLSGIALLLLLRAAMGFGLALLRPGYNGRHFWVVSSLACLSLGLAFALGTRQAWQSLR
>NZ_CP040439.1|WP_154352014.1|750025_750517_-|hypothetical-protein
MKMKYGVCLRILLASSPLLTAVLPAGARAAEGYVPDAVQAFVLETVLADEAQAFHEGHPTYLVPASVSRTRSDADVVAGLRAEFDRFYRGQPKPRKEVAHMAILVAQTALLLPDRSACSTDRVRCHQAVMGVRTRDDEAGLQATLRAFQDAGLDLTTLSGPAS
>NZ_CP040439.1|WP_154352015.1|750618_753135_-|FtsX-like-permease-family-protein
MNLLRHAWRALRREALAGDLLTVFAALVLGVAVMTAVGTLVNRVNLALTGSAAEMLGGDLGIAGRDDPPQAFAEEAQRRGLAHTRIASFGSVLFHGEASQMASIKAVAGGYPLRGTLRVRATPGGALIANAGMPAKGQAYADPRLLQGLGLKAGDDLEFGTGTLRIAGIIEAEPDTGGDLLTLSPTLLVNRADVEGTGLLGPGSRINYRLMFAGPADQVAALRQWLLPQVKGLRLLSVDDTQRGVRQAFDLAGRFLGLSALLAVLLAGVATALAANRFALRRIDQVAILRCLGARQRDILSGLALQLLMLAVPACALGIGLGMAAQEGLVQVLGSLVPQRLPLPEAMPALTGAGIGLLLLFGFGLPPLLRLRGVPPMRVLNRSFAALPPASLLAYVAALAASLLLAVQVTGDLKLALWVLGGLAALAVAAGVVGFMLLQLLRGLQHRLHGHWRLGLAALTRRRILAVMQLVGLSLSLCALLLLAVTGPGLLQQWRERLPADTPNYFLINIQPEQRDSVLAALRGLGANDASIEPMATGRLIAINGKPPLRVDRSPEQSGQPAQGEGQRDDDDENRPLNFSWRSSFPPANTLVNGTFWKADSTAAEASVEIGWAKRYGVQPGDRITIAVGEQEREFTVTSVRKADWNTFRPNFFVLLNPNAVGDTPHNLLSAFHLPAGKAAGLGELVRAQPNLSLLDVDAVISQVRDVMERVAQAVQLVMVFSLLAGVLVLLAALQATAGERRYDSAVLRTLGATRRQLRGAVLVEFGALGTLAALLAVGAAAAIGVVVSQKVFELPLLPPWPGLLIGGVVGIGLSLLAGWWGTRAILHTPPALALREA
>NZ_CP040439.1|WP_154262358.1|753131_753779_-|ATP-binding-cassette-domain-containing-protein
MQGPEGEVHILDNITLTVHEGTSAAIVGASGSGKTTLLGLLAGLDLPSRGRIALAGQDLAALDEEARAQLRAREVGFVFQSFHLLPALTAAENVALPLELAGREDRARVDEVLAQVGLAHRARHYPRQLSGGEQQRVALARAFVTRPRILFADEPTGSLDHATGQHISDLLFELNAGSGTTLVLVTHDLRLAQRCQYIHRIDDGRLLPVERGAQA
>NZ_CP040439.1|WP_154262360.1|753854_754499_+|arylesterase
MRKMGWSRRAGVMMVLLLGFLLLPGLACAKGPAGTVLVLGDSLSAAHNIPADAGWVSLLQQRVRQQSKTPARIVNASMSGETTAGALTRLPALLAKEKPTVVVIALGGNDALRGLTPAQVQGNLEKMVQASQKAGAKVLLLGIDVPPNYGPAYRQRLAAAYKALATQYKVPLLPFLLEGVALQPGMMQADGLHPTAQAQPKVLDNVWPLLRPLL
>NZ_CP040439.1|WP_086016257.1|754553_755300_+|response-regulator-transcription-factor
MFHKAEVRGNHMRQTKETSGLVLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEVCRRLRNDARKSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRRERRQVGSEVLKVADLVLDPVSMRATRAGTELQLSPIGLRLLTILMRESPRVVTRQEIEREIWGNGLPDSDTLRSHLYNLRKIIDKPFDRPLLHTVQSAGYRIADIAQPMA
>NZ_CP040439.1|WP_032129926.1|755455_756727_+|HAMP-domain-containing-histidine-kinase
MPHGLPRKIRIAFILQAVLASLGILLGAWLVSLVIKHSLVGAALREEAAYFWTLHEASPVQPPPNTQNIRGYLLESGQSALSLPANLRNLEPGFHELPKDDQLVLVDVRPAGRLYLVFLRSRAEMLAFWFGIVPVLLTLLAVYGASWVTYRASKRLVSPVNWLARRVSRWDPGHPEAADLEPNKLPADMQGETRQLAAALHSLANRVSAHVARERNFTRDASHELRTPLTVIRVASDMALGDDSLEPRLRRSLQRIQRAGRDMEAVIDAFLILAREADVEPQVELFDVNDIVRYEVDNANELLGTRPVSVHLHSDGPVQLHAPPRVLQVVVSNLVRNACSYTDEGRIDVHVHNDRVVVRDTGIGMSADALSRAFEPFYRAEPSRPQGTGLGLSIVRRLCDRFGWKVSLASEPGQGTEATVIFR
>NZ_CP040439.1|WP_154262362.1|757022_757724_-|hypothetical-protein
MSRRRTCLLMLGLLTAAPLAQALSPAKPPRVPEQVSNVAWAGDMAHFASADQASPPPRGGIEFIGSSSIRMWESLATDFPGQPVFNRGFGGSEVRDSTWYAGQIVVPYAPCKVFFYAGDNDLNSGRSAVQVRDDVVAFVQRVHRDLPKTKVEYLSIKPSPSRAHLLPAINEANTLIKAALAKLPNTGFTDVYTPMLGADGQPDATLFREDMLHMTPAGYAIWTRALGPKVKCD
>NZ_CP040439.1|WP_032129924.1|757935_758331_+|diacylglycerol-kinase
MADQFGHLPRGPRRIFQAARWSWQGLRAAWLHESSFRLEVYLLILLTPVAVWLGQTPVERALLIGSMLLVLAMELANSAIEAVIERYGSEIHELAGRAKDMGSAAVFVLMMNVLLCWALVVVPHAMAGNYG
>NZ_CP040439.1|WP_106467106.1|758362_759112_+|TerC-family-protein
MSFEFLADPNAWVTLFTLSALEIVLGIDNLVFISIAVSKLPEERRPFARKLGIAVACITRIALLVSLAYLAHMSANLFTVAGMGISIRDLVLIVGGLFLIIKGYMEIKELITGGEDENPATSKASGVFGMVILQIAIIDIVFSLDSVITAVGIADHIPVMVAAILLSVLVMLLAANPLGRFIDANPTVKMLALAFILLIGAVLILDGLDVHVPKPYIYAAMGFSVLVEWLNLLMRRRAREHHVPGAGDW
>NZ_CP040439.1|WP_154352016.1|759336_760497_+|MFS-transporter
MNSRVALLALAVGAFAIGTTEFAPMGLLPVIADGVGVSIPTAGMLITAYAVGVMLGAPVMTLLMGRFGKRTALMLLMSIFVVGNLLSALAPNYGLLLLSRLVTSLNHGAFFGIGAVVAASLVPKDKQAAAVATMFMGLTIANIGGVPLATWVGQQLGWRLSFAGTAVLGLVAITALGFALPASAPGPRPDVRREVRAILQPQVLLAMATTVLGAGAMFTLYTYVAPVLTELTSASNAFIAMSLALIGIGFTFGNGIGGRMADWSLDGATRILLAVLAVLMFALPLALMSHVTAALGVLLFGAATFAIVPPLQIRVMQAASEAPGLASSINVGAFNLGNAVGAALGGAVISSGLGYAAISVAGGLLAASGLLLAWLGRPRTAVAEAC

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Crispr_ID: NZ_CP040439_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040439_5

792321-792410

Orphan

Consensus_repeat	Method
GGTAGTGCCGGCCGCTGGCCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040439_5

>merge|NZ_CP040439|5|792321-792410|CRISPRCasFinder
GGTAGTGCCGGCCGCTGGCCGGCGCTATCGGCCCTCATCCGCGCATGGCGTGGATCTACCGCAGCCTGGTAGTGCCGGCCGCTGGCCGGC

>NZ_CP040439|5|4|792321-792410|CRISPRCasFinder
GGTAGTGCCGGCCGCTGGCCGGC	GCTATCGGCCCTCATCCGCGCATGGCGTGGATCTACCGCAGCCT
GGTAGTGCCGGCCGCTGGCCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040439.1\|WP_154262395.1\|787740_789333_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
NZ_CP040439.1\|WP_154352023.1\|785157_786114_-\|transaldolase	unknown	unknown	gnl\|CDD\|235381
NZ_CP040439.1\|WP_004144802.1\|783879_784566_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|234604
NZ_CP040439.1\|WP_154353593.1\|792457_793342_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP040439.1\|WP_154262392.1\|781598_783347_-\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	unknown	unknown	gnl\|CDD\|235424
NZ_CP040439.1\|WP_154352029.1\|801644_802106_-\|DUF3106-domain-containing-protein	unknown	unknown	gnl\|CDD\|378633
NZ_CP040439.1\|WP_154352026.1\|794928_795726_-\|N-formylglutamate-amidohydrolase	unknown	unknown	gnl\|CDD\|226441
NZ_CP040439.1\|WP_004144811.1\|789558_790122_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
NZ_CP040439.1\|WP_154352025.1\|793447_794863_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP040439.1\|WP_010481810.1\|783606_783870_+\|DUF2007-domain-containing-protein	unknown	unknown	gnl\|CDD\|378182
NZ_CP040439.1\|WP_154352024.1\|790470_791328_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_CP040439.1\|WP_032129919.1\|786692_787655_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182999
NZ_CP040439.1\|WP_005408156.1\|786164_786569_-\|nucleoside-diphosphate-kinase-regulator	unknown	unknown	gnl\|CDD\|180236
NZ_CP040439.1\|WP_154262406.1\|798129_800451_+\|DUF1631-family-protein	unknown	unknown	gnl\|CDD\|377917
NZ_CP040439.1\|WP_014646006.1\|791376_792318_+\|prolyl-aminopeptidase	unknown	unknown	gnl\|CDD\|130316
NZ_CP040439.1\|WP_154352027.1\|797216_797798_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
NZ_CP040439.1\|WP_154262403.1\|795718_796273_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239516
NZ_CP040439.1\|WP_154262404.1\|796269_797220_-\|exodeoxyribonuclease-IX	unknown	unknown	gnl\|CDD\|235591
NZ_CP040439.1\|WP_154352030.1\|802109_802436_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378740
NZ_CP040439.1\|WP_154352028.1\|800503_801583_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-alpha	unknown	unknown	gnl\|CDD\|240629

Protein	Function_ID	Function_description	E-value
NZ_CP040439.1\|WP_154262395.1\|787740_789333_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
NZ_CP040439.1\|WP_154352023.1\|785157_786114_-\|transaldolase	gnl\|CDD\|235381	PRK05269, PRK05269, transaldolase B; Provisional.	0
NZ_CP040439.1\|WP_004144802.1\|783879_784566_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|234604	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA.	2.61046e-150
NZ_CP040439.1\|WP_154353593.1\|792457_793342_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.16299e-75
NZ_CP040439.1\|WP_154262392.1\|781598_783347_-\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
NZ_CP040439.1\|WP_154352029.1\|801644_802106_-\|DUF3106-domain-containing-protein	gnl\|CDD\|378633	pfam11304, DUF3106, Protein of unknown function (DUF3106). Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.	3.41743e-21
NZ_CP040439.1\|WP_154352026.1\|794928_795726_-\|N-formylglutamate-amidohydrolase	gnl\|CDD\|226441	COG3931, COG3931, Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism].	3.72667e-99
NZ_CP040439.1\|WP_004144811.1\|789558_790122_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	3.26091e-122
NZ_CP040439.1\|WP_154352025.1\|793447_794863_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.97117e-43
NZ_CP040439.1\|WP_010481810.1\|783606_783870_+\|DUF2007-domain-containing-protein	gnl\|CDD\|378182	pfam09413, DUF2007, Putative prokaryotic signal transducing protein. This is a family of putative prokaryotic signal transducing proteins of Pii-type.	1.62355e-08
NZ_CP040439.1\|WP_154352024.1\|790470_791328_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	3.02786e-128
NZ_CP040439.1\|WP_032129919.1\|786692_787655_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182999	PRK11151, PRK11151, DNA-binding transcriptional regulator OxyR; Provisional.	1.19621e-104
NZ_CP040439.1\|WP_005408156.1\|786164_786569_-\|nucleoside-diphosphate-kinase-regulator	gnl\|CDD\|180236	PRK05753, PRK05753, nucleoside diphosphate kinase regulator; Provisional.	1.62515e-49
NZ_CP040439.1\|WP_154262406.1\|798129_800451_+\|DUF1631-family-protein	gnl\|CDD\|377917	pfam07793, DUF1631, Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.	0
NZ_CP040439.1\|WP_014646006.1\|791376_792318_+\|prolyl-aminopeptidase	gnl\|CDD\|130316	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.	1.21696e-177
NZ_CP040439.1\|WP_154352027.1\|797216_797798_-\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	5.96827e-53
NZ_CP040439.1\|WP_154262403.1\|795718_796273_-\|NUDIX-domain-containing-protein	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	2.55532e-38
NZ_CP040439.1\|WP_154262404.1\|796269_797220_-\|exodeoxyribonuclease-IX	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	1.93235e-85
NZ_CP040439.1\|WP_154352030.1\|802109_802436_-\|hypothetical-protein	gnl\|CDD\|378740	pfam11859, DUF3379, Protein of unknown function (DUF3379). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.	0.00195217
NZ_CP040439.1\|WP_154352028.1\|800503_801583_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-alpha	gnl\|CDD\|240629	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matrix side. DI contains 2 domains in Rossmann-like folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than a classical Rossmann domain.	0

>NZ_CP040439.1|WP_014646006.1|791376_792318_+|prolyl-aminopeptidase
MRTLYPAITPYDVGTLKVDDRHTLYFEQCGNPDGKPVVMLHGGPGGGCSDKMRQFHDPSKYRIILFDQRGAGRSTPHADLVDNTTWDLVADIEKLREHLKVDRWQVFGGSWGSTLALAYAETHPQRVTELVLRGIFMLRRWELEWFYQEGANRLFPDAWEHYLKPIPSVERHDLISAFHRRLTSDDETTRLEAAKAWAVWEGATSFLHVDDDFINSHEDPHFALAFARIENHYFVNGGFFEVEDQLLRDAHRIADIPGVIVHGRYDVVCPLANAWDLTKVWPKAKLEITPASGHSAFEAENVDALVRATDSFA
>NZ_CP040439.1|WP_154352024.1|790470_791328_+|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MPFQPEPSLRQVVAEASARLGGVEARHEAELLLLHVLERPRSWLFAHATDPLAAADQAAFEALLARRVAGEPVAYLTGRRGFWTLDLEVDPATLIPRPETELLVDLALERLPPDQLLQLADLGTGSGAIAFALASERPQAQVLATDASPGALAVAARNAARHELRNVRFAEGGHDWYAPLQGARFDLIASNPPYIASDDPHLEQGDLRFEPATALASGADGLDDIRRIVDGGLAHLLPSGWLLIEHGWDQGEAIRALFDAAGFAEVQTVQDLEQRDRITLGRRPA
>NZ_CP040439.1|WP_004144811.1|789558_790122_-|peroxiredoxin
MSLINTQIQPFEANAYLNGEFIKVSDSTLKGQWSVLIFMPAAFTFNCPTEIEDAADHYAEFKKAGAEVYIVTTDTHFSHKVWHETSPAVGKAQFPLVGDPTHQLTNAFGVHIPEEGLALRGTFIINPEGVIKTLEIHSNEIARDVSETLRKLKAAQFTAANPNQVCPAKWKEGEKTLTPSLDLVGKI
>NZ_CP040439.1|WP_154262395.1|787740_789333_-|alkyl-hydroperoxide-reductase-subunit-F
MLDANLQSQLKTYLERVTRPIQITAHADDGAKSQEMLELLQTLDSLSDSISLQVLRDGQGRVPSFDLGTPGQDIHLTFAGLPMGHEFTSLVLALLQVGGHPSKATAELIEQVQNLEGEYRFETYFSLSCQNCPDVVQALNLAAVLNPRIQHVAIDGALFQDEVEKREIMSVPTVYLNGEVFDQGRMTLEQIVAKLDTNASKRDAEKIAAKDAFDVLVVGGGPAGAAAAIYAARKGIRTGIAAERFGGQVLDTMAIENFISVKETEGPKLATALEQHVREYEVDIMNLQRASALVPAGEDGLLQVQLENGAVLKSRSVILSTGARWRQMNVPGEDQYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVSHVTLLEFDSSLRADEVLQKKLRSLANVTVLTSAQTTEVLGDGSRVTGLVYKDRVGGDAHRVELEGIFVQIGLLPNTEWLKDTVALSPRGEVVIDDRGQTNLPGVFAAGDCTTVPYKQIIIAMGAGSTAALSAFDHLIRSSVSSSSGAVAEAA
>NZ_CP040439.1|WP_032129919.1|786692_787655_-|LysR-family-transcriptional-regulator
MNLRDLKYLVALADHKHFGRAAASCFVSQPTLSTQIRKLEEELGLPLVERAPRKVMLTPAGQEAAARARVIVSEVEQLKEAARRSRDPEAGTVRLGIFPTLGPYLLPHVIPRIRDRFPELELLLVEEKSDVLLDRLREGKLDAALLALPVIDDQLHAEFLFEEPFLLAVSGRHPLARREHLDVQELATQKLLLLEDGHCLRDQALEVCRLFGANEKSEFRATSLETLRQMVAADVGITLLPSLSVQPPVPRSNNIRLLDFTGEGRPSRRIAMIWRRSSAMNDFLMELADQFKRLPQALFTLEAVNAAGDTTALPGPALNG
>NZ_CP040439.1|WP_005408156.1|786164_786569_-|nucleoside-diphosphate-kinase-regulator
MSTASGLPPSITVSTFDMDRLDAMLESPALSQTPAALALAEELNRATVLAPDQIPEGIVMMHSRVECEDEVSGEKHVLTLVFPREANVDEGKVSVLAPVGSALLGLSIGQSIDWNAPGGRKLRLRVTAVHNDRP
>NZ_CP040439.1|WP_154352023.1|785157_786114_-|transaldolase
MSTPSKLSQLRELSVVVADTGDYEAIKRLQPVDCTTNPTLVKKALDLPVYAELIERELAWGRQQSGDREAVVHAVADRLTIGVGALLSTLVPGRVSTEVDADQAHDTAATVAKARQFIQMYADAGVPREKILIKIAATWEGVEAARILQAEGIDCNLTLIFNPTQALACSEAGAFLISPFVGRILDWYVANGQTPASIDEDPGVKFVRGVYAEFKRRGSPTVVMGASFRSTAQIEALAGCDRLTISPDLLEKLDADHGELPRKLVAGVADGVAVTPIDAAKFAADLAADPMATEKLATGIDAFAKDLQALRERIRSEL
>NZ_CP040439.1|WP_004144802.1|783879_784566_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MLGIGQGILGIGAFKQRLPRPEEALPGRDQPLPLHSNQHFVNSHPLKDRFAGLQQIRFALGCFWGAERKFWTEPGVYSTSVGYAGGITPNPTYEEVCSGLTGHTEVVQVVFDPAVVSLERLLQLFWESHDPTQGMRQGNDTGTQYRSAIHATDEAQYAAALASREAYQAQLDAAGYGPITTEIVYPAPAYYYAEDYHQQYLAKNPNGYCGIGGTGVSCPIGLDVEAPR
>NZ_CP040439.1|WP_010481810.1|783606_783870_+|DUF2007-domain-containing-protein
MHIVYKADNLFDAHLVKHALEDAGIPAFVFGESLLGGMGELPLFGVLRVGIPDAARPQAEDIVAALDLGHAPDAPISDADDIAGLPA
>NZ_CP040439.1|WP_154262392.1|781598_783347_-|glutamine--tRNA-ligase/YqeY-domain-fusion-protein
MSEHTPASPETPADSHEKRDFIRQIVREDLASGKHQAIKTRFPPEPNGYLHIGHAKSICLNFGIAGEFSGVCNLRFDDTNPAKEDPEYVAAIQDDVRWLGFSWNELRHASDYFQAYYLAAEKLIEQGKAYVCDLSAEEVRAYRGTLTEPGRPSPWRDRSVEENLDLFRRMRAGEFPDGARTLRAKIDMASGNINLRDPALYRIKHVEHQNTGNAWPIYPMYDFAHALGDSIEGITHSLCTLEFEDHRPLYDWCVDNVDFAHDDTLTQPLVDAGLPREAAKPRQIEFSRLNINYTVMSKRKLMALVTEQLVDGWEDPRMPTLQGLRRRGYTPAAMRLFAERVGISKQNSLIDFSVLEGALREDLDSAAPRRMAVVDPVKLVLTNLPEGHVEQLTFSNHPKDESFGSREVPFAREVWIDREDFAEVPPKGWKRLVPGGEVRLRGAGIIRCDEVIKDADGTITELRGWLDPESRPGMEGANRKVKGTIHWVSAVHGVPAEIRLYDRLFSVPNPDDESEGKTYRDYLNPESRRTVTGYVEPAAASAAPEQSFQFERTGYFVADRRDHTEAKPVFNRSVTLRDTWSA
>NZ_CP040439.1|WP_154353593.1|792457_793342_-|LysR-family-transcriptional-regulator
MDLNAVRMLVQVAEARSFTVAAGQLGLSQSGLSRAIGRLEVSLGVKLLQRNTRNVALTPDGRQFVEQVAPLLAGLDDAERQLADRPCTPSGTLKISAPSMFGRKVLVPMLAPLLQQHPQLQVEAVLSDRLVDLVEEGFDAALRTGVIADQRIVARPLRPLRWVTVASPGYLARCGAPDDVAALQDHACLAVRNLRSGRLVDWQFLQDGQLREFTPPTRMVFDSGDPLVEAAIAGIGIVQVMDFAVADALADGRLQRVLQPFEGRSRALSLIYPPSRQCSPKLQVVADALLAGEW
>NZ_CP040439.1|WP_154352025.1|793447_794863_+|MFS-transporter
MPPLKYPRWALTLLATAQLIIALDATIIFVALHDMGRALQINAQQLQWVVSAYTVAFGGSLLLGGRAADLIGRRRFYRLGMLLFALASLLGALAPNATLLIIARAAQGVGAALLFPATLALINTLYAEGPVRNRALAIWSMASAVGLALGTLLGGVLTQAFGWPAVLAVIVPLATACAVAAGVWLPADGPRVQGRSFDLAGCLTVTAGGSLLVTTLVQGPEWGWTAPATLICLLLSAVLLTVFVQIEKRSRDPLMQFSLLRLPGLRAALGLTFAFMSSYGVQYYFLALYFQDGYGWSPLQAGMAFLLPTLVCTFGIRIAERMLRHRSPRQVLAWGFAAGAVGIAAVALAMPHGASYWPLLPGIVVLSVGQGMSWTAMWIVAGQGVPGPQQGVASGMAATAQQIGGALGLAVLVMVANAARGAQAATSPDALQGMVNAQYGAALFAALGVVIALGLRPATVVVVPAAGRQTQ
>NZ_CP040439.1|WP_154352026.1|794928_795726_-|N-formylglutamate-amidohydrolase
MADADMHALPALLGADDPAIYTLHRPQGASPYLLLADHAGQQVPRALAGLGLPQVELDRHIGWDIGIAGTTRQLAEQLDAWAIEQTYSRLLIDCNRPLASPTLIPEVSDHTVVPGNAGLSAAQRQQRIDAIHAPYHARIDAELDARRDAGRPTLLVMMHSFTPAMNGAQRPWHAGVLYHQDTRFAHALLQALRDEGDLVVGDNEPYSVSSTSDYAVPVHGEGRGLVHVELEIRQDLIADAAGQQAWAERLARIFSALQPQLLALG
>NZ_CP040439.1|WP_154262403.1|795718_796273_-|NUDIX-domain-containing-protein
MSQRYTEAPRVVYEGKYQRMLVRGTWEYSERTHAGGLAAIIIAVTPEDKVLFVEQFRVPLQAPTIEMPAGLVGDIHAGESIEVSAVRELEEETGWTADHAEVLMIGPTSSGASSEKIAFVRATGLRRIGEGGGDDSEDITVHEIPRSEAAAWLVQKMGEGYELDAKLWAGLWMIEHHLDGRPRG
>NZ_CP040439.1|WP_154262404.1|796269_797220_-|exodeoxyribonuclease-IX
MSLPAPPPSLYLVDASIYVFRAWHSLPDQFQDAQGWPTNAVHGFARFLLDLLERERPRHIAIAFDEALDSGFRHRLYPAYKANRDPAPEALKRQFVHCKALCAALGLAVLAHHEYEADDLIGSALHVHRGSHRGVIISADKDLSQLLLDHDEQWDYARNQRWDVAGVKARHGVHAHQIADYLALCGDAVDNIPGVSGVGSKSAAVLLAHFGSMDVLYERLDEVPFLRLRGAAQMAVRLREQREHAQLWRQLTTIALDAPLEGSQPGLLRQAADPELLGGLCQTLRFGPMTRRRLFDAAGVADPVPTPSFSNSGEPA
>NZ_CP040439.1|WP_154352027.1|797216_797798_-|nitroreductase
MPDPAALLALDARRSVPSRQLGEPGPDPATLQRMLASAVRVPDHGKRVPFRFLKIAGDARHTLGDFLAERSRQRDPHAGEAVFEKDRQRFSHAPLVIVVVASPRPDPKVPEQEQLMTAGCVCFALLQAAQALGFGAQWLTAWMAFDPVVQVHLGLAEGERIAGFIHIGTPKADVPERERPDPAALLRDWMPPA
>NZ_CP040439.1|WP_154262406.1|798129_800451_+|DUF1631-family-protein
MMSAPTPMGSPGRDPVQLQRARDMVLPALCQAFGAALARFDDALFDRAGNAGSSQLLFLDAMRELRRRREDIAAAFAGHLQRAWDALASGEPLSAEATLSGPAEDGLSLLAEHVLESRLAVRNFATVLLRDFKPVLARLDRRLGRLIGGAELDADHNPVSPEHLGVAIHEAFAGCELAPEVHLVLIKLCERDLRAPVGRIYEKLDEQLAAAGVMSQMGAPRRPLSAAPDPRMAPGVDDLVEPRHAAGFESEFSDDEQAAPAWAQRFAARWSERRGHMQQHLGSEDAGNGEAYAGQQGMLLEALHELLQQTRHVREDATSAAQVAVGQHRPLSQREMMSVLSLLQATPSATLRAAIGEDGESLAQRLKSEVLSSATRLGVDPGQTRLDPQDEDAIDLVGMLFDVMLDERELEGRSRELIGRLVVPFVKVAMLDRRMFVQKTHPARKLLNSLAEACEGNTGESQAERMLMAKVEEIIERLVAEFNENLAIFLTLEEEFREFLVQHRRRVEIAERRAAETQRGQEKLEMARSRAGAELDRRIGDATLPPAIAEFLRQPWQHHLTLALLREGEEGASVAEALSLADGLLEEVAEARRQIVGKPWLQAWQPVLAKVFASVGVHGDAATGAIDALHDTLQGIAESRPELQRALPELPQVALPAPPVAESPAVELGGQIDADDFDNADADRFRRMEIGNWLDFVDKDGKVQAGKLSWVSPISSRLLFVNRRGVRFCVASPEELAVMVRLGRLRAHVDDGAFDSAMQGVIDRLDPGSATLH
>NZ_CP040439.1|WP_154352028.1|800503_801583_+|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-alpha
MAVALLGIKETAPGERRVALTPETARKLGALGITVWYEAGAGLAAGFTDAAYDDAGARVFDEGRWAEIDILLCVQAPPVAVLEQLKPTASVVGLLTPGSDPALAALAAGDRLHLFPLQQLPRTTRAQAMDVLSSQAGMAGYKAALIAAERAPRFFPMLTTAAGTVRPAKVLVIGAGVAGLQAIATVRRLGAQVEGFDVRPETREQIQSLGARFLDLGVSAAGEGGYARALTDEERAEQQRRLADHLRSVDVVICTAAVPGRPAPTIVTAAMVEGMATGSVIVDLAAESGGNCALTQPGQCIEHQGVTIDGPLGLASRGATQASEMYARNLLNFVALFVREGELSFDWDDELLAKTRWQA
>NZ_CP040439.1|WP_154352029.1|801644_802106_-|DUF3106-domain-containing-protein
MSRLPTLPLLLTLALLPAVPALAQNATPAPAARPAPAAPLPAWEQLSQSQRESLLAPLRDRWNSADAGQRQRMLSHGQRWQSMSPEERDKARRGLRRFEHMSPEQREQARALFGQMRNMPPEQRDALRERWSQMTPEQRKDWVRDNPPPAKPR
>NZ_CP040439.1|WP_154352030.1|802109_802436_-|hypothetical-protein
MNRSLPSDDTLRSLHAQSLHALSPATLARLRQARHGATATHRGRWRWWLASACSLVVALGIGLQFTGHGTLAGPAPAPVLASVEDNGALYDENPDLYLWLGDTDLAME

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Crispr_ID: NZ_CP040439_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040439_6

1586260-1586336

Orphan

Consensus_repeat	Method
GCAGCCTTGCCCTTGTCGGCACCGCA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP040439_6

>merge|NZ_CP040439|6|1586260-1586336|CRISPRCasFinder
GCAGCCTTGCCCTTGTCGGCACCGCACTTGCCTTCGCCACACTTGCCTTCGGCAGCCTTGCCCTTGTCGGCGCCGCA

>NZ_CP040439|6|5|1586260-1586336|CRISPRCasFinder
GCAGCCTTGCCCTTGTCGGCACCGCA	CTTGCCTTCGCCACACTTGCCTTCG
GCAGCCTTGCCCTTGTCGGCGCCGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040439.1\|WP_154352183.1\|1584020_1584542_-\|DoxX-family-membrane-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP040439.1\|WP_154262933.1\|1574351_1576310_-\|MacB-family-efflux-pump-subunit	unknown	unknown	gnl\|CDD\|182528
NZ_CP040439.1\|WP_049421607.1\|1578490_1579900_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531
NZ_CP040439.1\|WP_032127902.1\|1588368_1589232_-\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|183065
NZ_CP040439.1\|WP_154264928.1\|1583199_1583784_-\|ribonuclease-T	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|179951
NZ_CP040439.1\|WP_154352187.1\|1591780_1592797_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl\|CDD\|273374
NZ_CP040439.1\|WP_005408788.1\|1587518_1588349_-\|phosphate-ABC-transporter-ATP-binding-protein-PstB	unknown	unknown	gnl\|CDD\|182692
NZ_CP040439.1\|WP_154262946.1\|1595356_1595710_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334
NZ_CP040439.1\|WP_014036547.1\|1586745_1587453_-\|phosphate-signaling-complex-protein-PhoU	unknown	unknown	gnl\|CDD\|273990
NZ_CP040439.1\|WP_154352184.1\|1584567_1585323_-\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NZ_CP040439.1\|WP_154262947.1\|1595714_1596497_-\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|180270
NZ_CP040439.1\|WP_154352182.1\|1572915_1574355_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|224455
NZ_CP040439.1\|WP_005408779.1\|1577755_1578484_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP040439.1\|WP_154352185.1\|1585315_1586191_-\|DUF692-family-protein	unknown	unknown	gnl\|CDD\|235447
NZ_CP040439.1\|WP_100471789.1\|1590282_1591371_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl\|CDD\|273374
NZ_CP040439.1\|WP_154352188.1\|1594664_1595357_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_CP040439.1\|WP_032127900.1\|1593350_1594583_+\|porin	unknown	unknown	gnl\|CDD\|379537
NZ_CP040439.1\|WP_154262943.1\|1589231_1590200_-\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|183070
NZ_CP040439.1\|WP_154262934.1\|1576306_1577551_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183211
NZ_CP040439.1\|WP_154262935.1\|1580077_1583104_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|225829

Protein	Function_ID	Function_description	E-value
NZ_CP040439.1\|WP_154352183.1\|1584020_1584542_-\|DoxX-family-membrane-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.60178e-17
NZ_CP040439.1\|WP_154262933.1\|1574351_1576310_-\|MacB-family-efflux-pump-subunit	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP040439.1\|WP_049421607.1\|1578490_1579900_+\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	1.72589e-44
NZ_CP040439.1\|WP_032127902.1\|1588368_1589232_-\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|183065	PRK11268, pstA, phosphate ABC transporter permease PstA.	6.72192e-114
NZ_CP040439.1\|WP_154264928.1\|1583199_1583784_-\|ribonuclease-T	gnl\|CDD\|179951	PRK05168, PRK05168, ribonuclease T; Provisional.	7.06107e-133
NZ_CP040439.1\|WP_154352187.1\|1591780_1592797_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl\|CDD\|273374	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88., phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins. [Transport and binding proteins, Anions].	2.56907e-141
NZ_CP040439.1\|WP_005408788.1\|1587518_1588349_-\|phosphate-ABC-transporter-ATP-binding-protein-PstB	gnl\|CDD\|182692	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB.	0
NZ_CP040439.1\|WP_154262946.1\|1595356_1595710_-\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.000328703
NZ_CP040439.1\|WP_014036547.1\|1586745_1587453_-\|phosphate-signaling-complex-protein-PhoU	gnl\|CDD\|273990	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function. [Regulatory functions, Other, Transport and binding proteins, Anions].	2.05239e-59
NZ_CP040439.1\|WP_154352184.1\|1584567_1585323_-\|DUF2063-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	1.2298e-56
NZ_CP040439.1\|WP_154262947.1\|1595714_1596497_-\|enoyl-CoA-hydratase	gnl\|CDD\|180270	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase.	2.37475e-93
NZ_CP040439.1\|WP_154352182.1\|1572915_1574355_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	4.00052e-63
NZ_CP040439.1\|WP_005408779.1\|1577755_1578484_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.03338e-74
NZ_CP040439.1\|WP_154352185.1\|1585315_1586191_-\|DUF692-family-protein	gnl\|CDD\|235447	PRK05409, PRK05409, hypothetical protein; Provisional.	5.87006e-143
NZ_CP040439.1\|WP_100471789.1\|1590282_1591371_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl\|CDD\|273374	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88., phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins. [Transport and binding proteins, Anions].	1.4573e-133
NZ_CP040439.1\|WP_154352188.1\|1594664_1595357_-\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	1.80636e-117
NZ_CP040439.1\|WP_032127900.1\|1593350_1594583_+\|porin	gnl\|CDD\|379537	pfam14282, FlxA, FlxA-like protein. This family includes FlxA from E. coli. The expression of FlxA is regulated by the FliA sigma factor, a transcription factor specific for class 3 flagellar operons. However FlxA is not required for flagellar function or formation.	3.52064e-07
NZ_CP040439.1\|WP_154262943.1\|1589231_1590200_-\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|183070	PRK11275, pstC, phosphate ABC transporter permease PstC.	1.06696e-119
NZ_CP040439.1\|WP_154262934.1\|1576306_1577551_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	4.10289e-102
NZ_CP040439.1\|WP_154262935.1\|1580077_1583104_+\|diguanylate-cyclase	gnl\|CDD\|225829	COG3292, COG3292, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms].	3.06412e-63

>NZ_CP040439.1|WP_154352185.1|1585315_1586191_-|DUF692-family-protein
MASTDVRASAVHLRSPLRAAAAGLGLRRALLQDLRDAPAGDFDFLECAPENWIHVGGPAGDALAELAQRHPLSCHGLSLSLGGSAPLDTQLLEQVGQFLEKHRVPLYSEHLSYCSDDGHLYDLLPIPFTDEAVRHTAARIARVQDLLGRRIAVENVSYYLAPEPAMDELAFTNAVLAEADCDLLLDVNNVYVNACNHGYDADTFIAGLPAERIVCLHVAGHLDEAPDLKIDTHGSAVIDPVWDLLARTYARIGPRPTLLERDFNFPPYAELQGELQTIRRLQATHGGTAHD
>NZ_CP040439.1|WP_154352184.1|1584567_1585323_-|DUF2063-domain-containing-protein
MTDARGTLRAQQHAFTAHLRDPQGVPPPAGLEARRVTVYQRLLFNNLLGLLSNGFPVCVRLLSEPAWSDLVRHYFATHRCQTPLFTELAAEFVQWLQAQPQLPHPALAELAHYEWVETALYQLQAEPLPAPGDIDPLQVPLQRSPLAWPLLYQWPVHRLGAEDAPMQPPAEPTGLLVRREADGEVRFAVLSPLAVYLLSSVGERPGLDGHAYLRQLAAANGLAEEALAGPGAALLQQFLQAGVIGPLTVPG
>NZ_CP040439.1|WP_154352183.1|1584020_1584542_-|DoxX-family-membrane-protein
MNLPTLAAARGQLDRLAPWLAPLGLRLLLAWEYFESGREKLQGQNWFADLQDAFPFPFDQLPAALNWQLATWFELIGAACLLVGFGTRFAAASLLVLTVVATYAVHWPMEWNSLADLAMGYAITDQGFGNFKLPVLFMAMLLPLIFTGAGKLSLDAWLARWSPSATPARPAVR
>NZ_CP040439.1|WP_154264928.1|1583199_1583784_-|ribonuclease-T
MSQRFRGFLPVVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLEIDPKSLEVTGIILDHPFRLAKEEKAALDHIFTPVRAAMKKYGCQRAILVGHNAHFDLGFVNAAVARTGHKRNPFHPFSVFDTVTMAGIAYGQTVLARAATAAGLGWDANEAHSAVYDTEQTARLFCTIANAWPR
>NZ_CP040439.1|WP_154262935.1|1580077_1583104_+|diguanylate-cyclase
MAGQGDIGRWVERCGSDIGRWLRQGLLWLLLALALPVAAQEGAPPLRDYAIDVWTSRNGLPHNSLRDIAQTPEGHLWFATWEGLVRYNGLDFTVFDRSTRPGLRDNGIGALFVDRQGGLWISDSRGNVSHRGNDGQWRVWEHQADTPQVLIQSMQMDSQGRLWLLYEGKGIGYLTPDTGIVYQAPAADLPMAMSFTKLVVDAQDRVWAGTLDGLVLRDNDGVLKRAPAAWGLGAGSGLSWPYRAPDGALWIVAGERLYRVEDDRLVLMHRLPGQLHLTSMLQDRHGDLWLGTENQGLLRISAHGLERLPAGLNLPGGRVVSLREDAEGSIWVGANGGLYRLRETLFSSYTERDGLSGDYVRTVFEDRERQLWVGSASGLDLQTADGRFRAMPLHNRGGKAPSVLSLAQGPDGDLWVGTFGDGVYRLGPDGRLRHNYAAADGMPGGNIRAISVDPQGVVWAGTQKGVVRIDGDRVQVSSVAGMPSGLITALEHDHQGNLWIGTIEGIRVLRGDHVQSIDLAPMGGGRSVFGFHQLGDAMWISSDRGLYRWRNGTLARVGLEQGMPVDAVFQLVPDRLGNVWISSNRGVLRTDMTTLNAVADGRTPRVVVERYNEIDGMANAQANGSSSPSAILRQDGTFWVVTAGGLSTVDPQRLQRFRERLSPPAAIESVQVDGAPVHWEGPDRNYIPGGRRLAVSYVGLSYLMSDRIRYRTRLDGLDTGWVERGPQRSVEFVGLPPGDYTLHVAAAHPSGSWGQQEAVWSFTVEPFWWQRRSVQVLGGLLLLAGLVALYRLLLQQLKASNLRLARRVDEATFDLQAKTVHLQALNQEKTELAERLARQAEAFERQAREDALTGLANRRAFDETLARDFARSQRSGHPLCLVVLDIDHFKDVNDRHSHSIGDAVLVQVARLIAAASRDSDLPARTGGEEFALLLNDTRLEEAAQLCARLRGLFHDHPDWAGVDGLRVTFSAGLVELDADDRTPALLYQRADRALYRAKSDGRDRTSIG
>NZ_CP040439.1|WP_049421607.1|1578490_1579900_+|HAMP-domain-containing-protein
MKRLRHFLSSMVGRLFVILLLGMSVAAIGATMLATSKRQQEFERQNLNRIADRLQGYVNLLDGNPELRERLLEIGGPSVRALQPGARLGRADTALMEVLDDRPGPVARAHVHFASFRSCIPKLQDLLPPPPPGHRKHPRERDPAFIPPKCRAVDVTLNDGTLLKLALDSPAVAHNGILAVDPWFLTLLVLAIAVLAYIVARMASAPLQELAAAAEDLGDDLQRDPLPLRGPREVQRAAEAFNAMQHRLQRHLAERTQMLAAITHDLQTPLTRLRLRLENVSDEVLRERLIGDLAAMQALVREGLELARSAESAEQRAALDLDSLLESIVEDTAEGGGDVVFEGGSGAVLMLRPLAMHRLFSNLVDNAVMYAYRVRVRVERSGGAITVVVADDGPGLAEDQLEAVFDPFVRVETSRSRETGGAGLGLTIARALAEKDGARLWLRNRAEGGLEAVVQWPASAQVTPPGRAG
>NZ_CP040439.1|WP_005408779.1|1577755_1578484_+|response-regulator
METENTMHRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADGTAMRQLLDREHVDLIVLDLNLPREDGLTLCRDLRARSNTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLRRTEALPANLEPLAVRRARFSRWVFDLEHRHLVDPDDRVVVLSGAEFRLLRVFIAHANKVLSREQLVALSSGRNYEAQDRAIDLQVSRLRNKLGDDGGPDGLIKTVRNEGYVLASSVNLE
>NZ_CP040439.1|WP_154262934.1|1576306_1577551_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MTFRLLPATRRGRLILIALLALAVAAAAWWLLRKPAAPAVATTPVSRGDIEQTVEATGVIDAYKLVSVGAQASGQIKSLKVQLGDTVKEGDLIAEIDATTQQNQVLNAQASLDQVTAQRAVQQATLRQAELEFARQQQMLAAEATSRQEYDAAEAQLKTARAQLQSYEAQIKGRETELGTARANLAYTRITAPMDGTVVAVVAEEGRTVNANQTAPTIVMLARLDVVTVNAEISEADVVKIKAGMPVYFTTLGDPDRKYHATLRQINPAPASIANENSSSSSSSSSSSSSSAVYYNALFDVENPDGTLRIDMTAQVSVLLKQAKGVLMVPAVALGPKRRGDERMVRVLDDKGQPQPRKVTVGINNGASAEILSGLKEGERVVVGEAGAAGASAGGGGNRSGMQMRVGGPGMGRR
>NZ_CP040439.1|WP_154262933.1|1574351_1576310_-|MacB-family-efflux-pump-subunit
MSTTAPLLRLRDLRREFPAGDDVIAVLRDVNLDIHAGEMVAIVGQSGSGKSTLMNILGCLDRPTRGSYQVAGRETGRMEPDELAELRREHFGFIFQRYHLLGDLDARGNVEVPAVYAGSPGPVRNARAEQLLQRLGLSDRMHHKPGQLSGGQQQRVSIARALMNGGEVILADEPTGALDTKSGEEVMAILGELHAEGHTIIIVTHDMSVAEHAQRIIEIRDGEIIADRANPNAPTYRAQREASTGVARGNSWRAARDRFTEAFRMALLAMNAHRLRTFLTMLGIIIGIASVVSVVALGNGSQQQILQNISALGTNTIDVYPGRGFGDMRSARVQTLRASDADALARQSYVDSSTPSVSTSVTARYRNQSSTAQVSGVGEQFFRVKGVTLLSGSFFDADAVKGLGQVAVIDENTQTQFFPDVDPIGQVILLGNVPARVVGVAKRQSFGFGGSTSLSVWLPYTTVMSRMLGQSHVSSITVRVDDATPMDAAQEAITRLLTMRHGTEDFFLSNSAEIRQTIEQTTRTMTLLIGAIAAIALLVGGIGVMNIMLVSVTERTREIGVRMAVGARQSDIRQQFLIEAVLVCLLGGVLGIGLALLLGSMIGRFASDFQVLFSTASIVAAFACSTLIGVAFGFLPARNAAQLDPVEALARE
>NZ_CP040439.1|WP_154352182.1|1572915_1574355_-|efflux-transporter-outer-membrane-subunit
MKMMTRLPFPAPSRLLLAGAVLLALSGCASMGRYPVQAPDVAASYGRGDATLNVPADVPRSSLDTPGRDIRQDTWWTGFGDERLDRLVAQALAANSDLAAAGLAVQRSRLQAGLASNALWPQPSSSGVSGSASRATDQADDWRRSYSTGVSLGWEVDLWGRLRTQRDIARWEAEASEEDRQNTALLVISDTINQYWNLAYLNQSIATGQANLERLERTRELVQARFDAGAVSRLEVRQALQNLQSQRSSQSALEQQRVEVRNALTVLLDGTPWPQQDEPQDLLGARSPSIAEGLPTDLLGRRPDLRAAELRLRNSLKTIKVTATQYYPALSLTGSLGSSATSLGDVLRNPVATLGAGLSLPFLNLQRAQLDTDIAGTGYQIAATNFRKTLYTALSEVDNALSAREQLARQVAASQASYDEAVEVERAQEVRYRVGATDLRTWLEAQQTRRDAELSLARVRQGQLNNDVTLFKALGGSAG
>NZ_CP040439.1|WP_014036547.1|1586745_1587453_-|phosphate-signaling-complex-protein-PhoU
MNLPNDHIVKSYDEEQQRLVAEIVRMGEMAVAQLEAAMDVIEKRDENAAHRIIANDEAIDALEQQISHDVMRLALRGPMARDLREILAGLRIPADIERIGDYAANVAKRSIALGKVPPLPQIQGLRALGRLAAQQVRRAIAAYRDNDADAALELREDDARLDAQYTALFRELLTYMMEDPRNITPCTHLLFMAKNLERVGDHATNIAENVWFLVHGEQPLPPREKRDETSSTGQP
>NZ_CP040439.1|WP_005408788.1|1587518_1588349_-|phosphate-ABC-transporter-ATP-binding-protein-PstB
MNDLSNAVPMQRIAVPSSHESLHTPSPVKLAARGLDFYYDKFHALKGINLEIPEKRVTALIGPSGCGKSTLLRIFNRIYALYPKLEARGEVLLDGENILSPKYPMNRLRSKVGMVFQKPVPFPMTIFENVAYGIRHHEKLSKADMADRVEQALRQGALWDEVKDKLGQSALGLSGGQQQRLCIARAVALRPSVLLLDEPTSALDPISTSRIEQLVEELKHEYTIVIVTHNMQQAARVSDYTAFMYLGDLIEHDRTEVIFSQPSQRQTEDYITGRFG
>NZ_CP040439.1|WP_032127902.1|1588368_1589232_-|phosphate-ABC-transporter-permease-PstA
MSTTADSLYLRRRIGNVVAITASCATALFGLFFLGWILFTLASKGLAGINWDLFTKMTPPPMQEGGLANAFFGSAVMCALAIGIGTPLGVLAGTWLAEYGNARKAGTVVRFVNDILLSAPSIVLGLFVYTLYVMQTGGNFSAFAGALSLAFIVLPVVVRTTDEMLRLVPSQMREAALSLGIPQWKVIVQVLYRSASAGIITGILLALARISGETAPLLFTAFGNQYWNNNIFQPMASVPVVMNQFAGSPYESWQVLAWAGALVLTVFVLLVSLAARGILLRNRISHD
>NZ_CP040439.1|WP_154262943.1|1589231_1590200_-|phosphate-ABC-transporter-permease-subunit-PstC
MNAIAQPVAAPSTRDTRDARNDKLFRWVLVGTVIFVLIALACAALSMLWGGRHALQMQGLSFFFSADWNPVENKFGALAPIYGTLVTAIIAMVIAVPVSFGIAFFLTEVAPRWLRGPIGTAIELLAGIPSIIYGMWGLFVLVPVMTEYVTPFLNETLGEWPVIGPLFQGPPLGIGMLTAGFVLAIMVIPFISSVMREVFLTVPTRLKESAYALGSTKWEVSWDIVLPYTRSAVIGGIFLGLGRALGETMAVAFVIGNSVRLSPSLLEPGTTIAALIANDFGEATETYRSALLLLGFVLFIVTFVVLAIARLMLMRLSRKEGN
>NZ_CP040439.1|WP_100471789.1|1590282_1591371_-|phosphate-ABC-transporter-substrate-binding-protein-PstS
MKLHSAGLAALSLAIALGLSACGGDKQAAQQPAADGAAAPAAAGAKVTAEVSGAGASFIFPLVSKWSADYNASTGAKINYQSIGSGGGIAQIKAGTVDFGSSDKPLSSEELAQAGLAQFPSAIGGVVPVVNIEGLEAGKLRLSGALLADIFLGKVKTWNDPAIVAANPGVKLPDGKITLVHRSDGSGTTFNFSNYLSKVSPEWKSKVGEGTSVQWPDGVGGKGNEGVASYVKQIKGSIGYVELAYALQNGMPYTAMQNAAGNWVEPSAETFAAAAASADWASAKDFNLVITNAPGEQAWPITATNFMLMQKQPKDAKRNQDTLAFFKWAFENGQAQANELHYVPLPAELVKQIEAYWATDLK
>NZ_CP040439.1|WP_154352187.1|1591780_1592797_-|phosphate-ABC-transporter-substrate-binding-protein-PstS
MIHAFKSRVAVAVFAASSVFAANAAEITGAGASFIYPVMSKWSADYNAATSNKVNYQSIGSGGGIAQIKAKTVDFGSSDAPLKPEELAAAGLAQFPSVIGGVVPVVNVAGIAPGALKLDGAVLANIFLGKIKTWNDPAIAALNPGLTLPNAKVTVVHRSDGSGTTFNFVNYLSKVSPEWKSSVGEGTSVQWPAGIGGKGNEGVAAYVKQIKGGIGYVELSYALQNKLSYTAMKNAAGRFVQPSDASFAAAAASADWASAKDFYLVMTNAPGAESWPITATNFILVHKKPKNAANGKATQEFFRWVYKSGDAQARQLDYVPLPDSLVRQIETYWTQNLK
>NZ_CP040439.1|WP_032127900.1|1593350_1594583_+|porin
MRSHLLAAAVVASLGLVSADAFAAPASTGVSQAQLQQLQAQIAALQAQVQQLQNDSQALQAQSDAQSEVNITQAQALEGAQKTQTSVDKLAKLVNDNKIGGRMFFDLTNIDKTSNGKDTAASGTGLDVKRFYLTVDHKFNDIWSANLTTDFQYSSAIGNTELFVKKAYVQGSFDPAFNLRVGAADMPWIPYVEKFYGMRYVENTLTDRLKYGNSSDWGLHGFGNLGNNFNYAVSVVSGAGYKNPTRSKGMDVEGRAAYTPNENFVVAVGGYSGKLGKETDIQSAENTYTRANAMVAYASSDFRVGGEYFQAKNLNNVMTVATDKTSGWSVWGSVRVTDGGINVFGRYDDTDVSKTLDPTLSDKYWNVGVEFPVMKNLKLSTVYKYTHLANASDKKNDKTKEFGVWGDLSF
>NZ_CP040439.1|WP_154352188.1|1594664_1595357_-|endonuclease-III
MATAKKIPRAPARRGGSMPRADVVEMFTRLRELNPHPKTELEYSSPFELLVAVALSAQATDVGVNKATRRLFPVANTPAKILALGEDGLKRYIATIGLFNAKAKNVIATCAILLEKHGGEVPRDRDELEALPGVGRKTANVVLNTAFGEPVMAVDTHIFRVANRTGLAPGKNVREVEDKLVKVIPAEFLLDAHHWLILHGRYVCKARKPDCPGCVIADLCRFKEKTTAEA
>NZ_CP040439.1|WP_154262946.1|1595356_1595710_-|hypothetical-protein
MASRPNPAQLFARVQADDLDGALQAGLMDYVARAGDEQLLPGHPDLPRRLQQAQQQLHAAWAARERYRARAVRLARREAERDARRTPAPAPDVKPALPPAAAAILARAKARAAGKEQ
>NZ_CP040439.1|WP_154262947.1|1595714_1596497_-|enoyl-CoA-hydratase
MADALIAVADDGAIRTVTVQRPDKLNALNAATLQALTEAFSAAAADPDVRVVVLTGAGPKAFVAGADIAEMNTLSAVQGRDFSLLGQALMRQIERMPKPVIARVNGFALGGGLELAMACHLRIAADTAKVGQPEINLGLIPGFGGSQRLLRLCGRAAALELCLLGAPINAARALELGIVNEVVPTDALDNRVQDIARQLARSAPLALRGLLDAVHVGGECSLEAGLEYESAQFGLLFATEDMREGTSAFLQRRPPAFQNR

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Crispr_ID: NZ_CP040439_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040439_7

2502613-2502722

Orphan

Consensus_repeat	Method
CTGGTGGGTGTCAACCTTGGTTGACACGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040439_7

>merge|NZ_CP040439|7|2502613-2502722|CRISPRCasFinder
CTGGTGGGTGTCAACCTTGGTTGACACGCTTTCTGATCTGCCGGCCAGCGGCCGGCACTACTGGTTCCTGTGGCCTGGCGCTGGTGGGTGTCAACCTTGGTTGGCACGCT

>NZ_CP040439|7|6|2502613-2502722|CRISPRCasFinder
CTGGTGGGTGTCAACCTTGGTTGACACGCT	TTCTGATCTGCCGGCCAGCGGCCGGCACTACTGGTTCCTGTGGCCTGGCG
CTGGTGGGTGTCAACCTTGGTTGGCACGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040439.1\|WP_154352523.1\|2509072_2510116_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|376439
NZ_CP040439.1\|WP_154263487.1\|2504292_2504682_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NZ_CP040439.1\|WP_154352526.1\|2512096_2514133_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237185
NZ_CP040439.1\|WP_154263483.1\|2499747_2501691_+\|DUF3857-domain-containing-protein	unknown	unknown	gnl\|CDD\|379003
NZ_CP040439.1\|WP_014037154.1\|2496142_2497114_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP040439.1\|WP_154352519.1\|2493562_2494831_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154264946.1\|2492749_2493490_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP040439.1\|WP_005409596.1\|2492444_2492663_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP040439.1\|WP_154263479.1\|2491493_2491871_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154263482.1\|2497347_2499708_+\|cell-division-protein-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP040439.1\|WP_154352521.1\|2506601_2507978_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|274824
NZ_CP040439.1\|WP_154263486.1\|2502741_2504103_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|237355
NZ_CP040439.1\|WP_154263489.1\|2505450_2506479_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225375
NZ_CP040439.1\|WP_154352520.1\|2494916_2496041_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|377314
NZ_CP040439.1\|WP_154352525.1\|2510938_2511682_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_100472233.1\|2501802_2502441_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|178807
NZ_CP040439.1\|WP_032127354.1\|2492000_2492273_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154352522.1\|2508029_2509076_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226928
NZ_CP040439.1\|WP_154263488.1\|2504755_2505130_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154352524.1\|2510112_2510874_+\|heme-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237422

Protein	Function_ID	Function_description	E-value
NZ_CP040439.1\|WP_154352523.1\|2509072_2510116_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	5.85261e-87
NZ_CP040439.1\|WP_154263487.1\|2504292_2504682_+\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	3.98329e-27
NZ_CP040439.1\|WP_154263483.1\|2499747_2501691_+\|DUF3857-domain-containing-protein	gnl\|CDD\|379003	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857). This family is based on the first domain of the PDB structure Structure 3KD4(residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase (3ebi, Z=10, rmsd 3.6A for 152 CA, seq id 12%), despite lack of any significant sequence similarity.	9.69513e-27
NZ_CP040439.1\|WP_014037154.1\|2496142_2497114_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	8.56317e-153
NZ_CP040439.1\|WP_154263489.1\|2505450_2506479_+\|alpha/beta-hydrolase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	7.35462e-56
NZ_CP040439.1\|WP_154264946.1\|2492749_2493490_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	4.1812e-130
NZ_CP040439.1\|WP_005409596.1\|2492444_2492663_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	7.64978e-48
NZ_CP040439.1\|WP_154352522.1\|2508029_2509076_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|226928	COG4558, ChuT, ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism].	3.59761e-33
NZ_CP040439.1\|WP_154263482.1\|2497347_2499708_+\|cell-division-protein-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP040439.1\|WP_154263486.1\|2502741_2504103_+\|AAA-family-ATPase	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP040439.1\|WP_154352520.1\|2494916_2496041_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|377314	pfam04339, FemAB_like, Peptidogalycan biosysnthesis/recognition. FemAB_like is a family of both baterial and Viridiplantae proteins with responsibility for building interpeptide bridges in peptidoglycan. Such a function is feasible for bacteria but less likely for the plant members of this family. Perhaps the plant-members are using homologous proteins to recognize bacterial peptidoglcans as part of their innate immune system.	0
NZ_CP040439.1\|WP_154352524.1\|2510112_2510874_+\|heme-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237422	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.	4.00987e-109
NZ_CP040439.1\|WP_100472233.1\|2501802_2502441_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|178807	PRK00031, lolA, outer membrane lipoprotein chaperone LolA.	1.86663e-73
NZ_CP040439.1\|WP_154352521.1\|2506601_2507978_+\|ATP-binding-protein	gnl\|CDD\|274824	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.	2.73849e-10
NZ_CP040439.1\|WP_154352526.1\|2512096_2514133_+\|elongation-factor-G	gnl\|CDD\|237185	PRK12739, PRK12739, elongation factor G; Reviewed.	0

>NZ_CP040439.1|WP_100472233.1|2501802_2502441_+|outer-membrane-lipoprotein-chaperone-LolA
MNFRFRRFLATTTLAVACAAAGSAWAGARDDLKAFTSGLKGLDGQFSQQVFDSRGKVKESTSGRVALSAPRLFRWEYVRPHEQLIVADGKKVWMYEPDLEQATVREQGKEEQNSPLTALINPALLEQQYDVSEEAAQRDGLQWLSLSPKRETEASFQYAALGFNAQGLAKMEITDAVGQRTVISFSGWKRNPGFAAGTFSFTPPKGTDVIGN
>NZ_CP040439.1|WP_154263483.1|2499747_2501691_+|DUF3857-domain-containing-protein
MLHPVPSALALALAAFLAAGPALADTATSAPATAPPSTSGDTEASNNFSIVRYRADYQVRPDAGNVQTETYEVLLKTKASVEQFSQVRLSYSEKMETLEVLGAYTITADGQRRDVPADRIYTQESYSSASAAMYADRKVRVIVFPNLAPGTRLFYQVRRTQATPYFPGYFGLWETFNVFTEYEDAEVTLSAPANLPMFVDSRGVQGSDRPTVKNGQAQWRWRYQRREAMPAQNWSAAGWEFGPNIMASTYRDWSQMGRAYQLKAGPAAQVTPELQALADEITAGISDRREQADALYRWVAQNIRYVAVYLGNGGLEPNSAQSILDNHYGDCKDHVTILEALLAAKGIASSPVLIGAGGGPTLPKIPVLGRFNHAITYIPEFDLYLDSTTAWARFGQLPEGDLGAPVMRTRDASLARTPANTPERNATSMEVRFTFDANGNLRGETIPKLGENAEIGMRAQFSQLNAQNRARAEEQIMAASGFDGRGQLQIQGVPVDLTRPFGYRMAFQAEDYADFSVAGGMAVPDPPGGESVRGLYATASAPANETPFYCNASLREETYRLQFPANAPIIAIPASQRFSNAAGEYRVDWSREGQDVIVHHRLQQSAVRGPEALCQPQDYPAFRALYREVRRGFRGQVLYGKLPGSGG
>NZ_CP040439.1|WP_154263482.1|2497347_2499708_+|cell-division-protein-FtsK
MAKQVPERSKSDDSKASRRTAAAATTDNPRRQRLWRDLGLIAIAPALLYLAASLFTYSATDPGWSHTGSVVAPVHNLGGRAGAWIADVLLQLFGYIAFLLPVVLGALAWIAMFGLKRESKGDNDLDPALRLVGLVGFLIAGTGFLHVRLFSGDVAHAGGILGKLVGNSLTVGFGALGANLFVLVLLLASITLATGLSWFTVMEKIGRGVMSLAPLLARKKEEVTEWQQTRVMREERQEVRKADAEVRAKREPVKIEPRPEPVIEKSDRAKRDTQIPMFRGVNGDGSDLPPLALLDDPKPQPVGYDKETLDALSRQIEFKLKDFRIDAQVVGANPGPVITRFEIEPAPGIKVSQISSLDKDIARGLSVKSVRVVDVIPGKSVIGLEIPNVTREMIYLSELLRSKEYDKSASVLTLALGKDIAGRSTVADLARMPHLLVAGTTGSGKSVAVNAMVLSLLFKASPKDLRMLMIDPKMLELSVYQGIPHLLAPVVTDMKEAANGLRWCVAEMERRYKLMSAVGVRNLAGFNKKVKEAQDAGQPLMDPLFKPNPELGEAPRPLETLPFIVIFIDEFADMMMIVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQSGAETLLGHGDMLYLPPGTAMPERVHGAFVSDEEVHRVVEHLKAMGPADYVDGVLDEVQTMGDGVVVGATGLPENSSAGDESDPLYDEALRVVTETRRASISGVQRRLKIGYNRAARLIEAMEAAGVVSPPEHNGDRTVLAPPPPK
>NZ_CP040439.1|WP_014037154.1|2496142_2497114_-|thioredoxin-disulfide-reductase
MSTSLPSRHQRLVILGSGPAGWTAAVYAARANLKPVVITGLQQGGQLMTTTEVDNWPGDAHGLMGPDLMARMQAHAERFETEVIFDHIHTADVSQRPFKLIGDSHEYTCDALIIATGATAKYLGIPTEDEFKGRGVSACATCDGFFYRDQDVVVVGGGNTAVEEALYLSNIARKVYLVHRRDTLKAEKIMQDKLFKKVAEGKIETVWHHQVEEVLGNDAGVTGVRVKSTLDGSTRDIDAHGFFVAIGHHPNTTLFDGQLAMNNGYLEIRSGLGGNATQTSVEGVFAAGDVADQHYRQAITSAGFGCMAALDAERYLDAQGKAS
>NZ_CP040439.1|WP_154352520.1|2494916_2496041_-|GNAT-family-N-acetyltransferase
MPSPRFLDSLQSVSATDWDALHDGRNPFVSHAFLSGLEQHGCLREDWGWQPRHFTLWEGNTLVGAIPGYLKTNSHGEFVFDHAWANAYARHGRDYYPKWLGAVPYSPVTGPRLLARHDSERAALLSALHDALPPLGVSSAHINFHTAGDEALFGDDWLLREDVQFQWQNPGDWATFEQFLGAMDHKHRKNIRQERAKVVRQGITFRVVHGDEASRADLQAMYRFYLQTFLEYGNAPALTEAFLRHLAISLGRGLVLFLAEQDGEPIAGALCLRGGDTLYGRYWGGATLPGLHFEACYYQGIEYCLREGLTRFEPGAQGEHKLARGFLPTLVHSRHWVADPDFAEALQEWCRQERRNVRRYQQELQGHGPFRVEP
>NZ_CP040439.1|WP_154352519.1|2493562_2494831_+|hypothetical-protein
MSDAITAILDVHDIPRTCSDSQSMLLMMATEQPDQLGSLMLLALARPSPSSAFLDMALDLLPDDAVPAVAAEAWRRYREGERGDVLTSVMEFASYQAPQVLQDDWEALLAVASEDEVQLAAQVWQGLPSATAAHWAQILAEAGDDREMARARALLLAAQSETYAIARGYLVDWGRLDAEVWAHWAGVAEGPQPRRLHGERPLHFRFGREQHRAQQEDEPSWRKRIWRLHPTWSGGRVHHAGHMGGPLEALCGSCHAPLQRLLRTDAAALQPDAAGEITLGLCLDCCGWEDPPVRFYRHDADGLPACHPSQHREVPNTPTDSGDLMRAEVGLVALESARWRQQDWGQSNHRQNLSRVGGAPSWVQSAWYPACIDCGEEMPFVMQLDSTLPTTGEGTLLWGSGGMLYTFWCAKCRVSGHFWQCT
>NZ_CP040439.1|WP_154264946.1|2492749_2493490_-|leucyl/phenylalanyl-tRNA--protein-transferase
MTRQLPWRLADAPDAPFPPAETALRQPDGLLAVGGDLHPVRLLNAYAGGIFPWFSEGEPILWWSPDPRMVFRTDGVHLSSRFRRQLRSSTWEVTADTAFSRVMRACAAAPRPGQDGTWISPAMVEAYSQLHDLGFAHSFEVWDRQTLVGGIYGVAIGAMFFGESMFSAASGGSKIALAALASTLRGWGWELIDAQVENPHLLRMGAEHLPRADFLEHVRQAVHRDGREGPWTQAVGRLPAQRLAGG
>NZ_CP040439.1|WP_005409596.1|2492444_2492663_-|translation-initiation-factor-IF-1
MSKDDSIEFEGTVSETLPNTTFRVRLENGHEIIAHISGRMRKNYIRILTGDRVKVEMTPYDLTKGRITYRMK
>NZ_CP040439.1|WP_032127354.1|2492000_2492273_-|hypothetical-protein
MTYLIVLDPQSVTSRCYASKGPDGTWFGQPCLVCTSMDASHPLYLAVQREIAHAGGTLKQRLHIPHEAVAFVIEDGGDQGRQQGFRSIAA
>NZ_CP040439.1|WP_154263479.1|2491493_2491871_-|hypothetical-protein
MNLSSLLIPLALSAVTLLASSVHAADTAPAQCVSLTGEQQIVRAGADKNILLRSGEDHYVVHFRNSCPSAVLATRLGFKTDGKEADELCSEGRSALDTGRGSCEVARIEPIDAERFKREARRRSR
>NZ_CP040439.1|WP_154263486.1|2502741_2504103_+|AAA-family-ATPase
MARHRSTSFPGPDLLSVDREHLRPLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTTLALLLAEYSDAEFRAISAVLSGLPEVRQVLAEAAQRFAEGRRTVLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPTDIVEALGRALGDRERGLGEEGIEVAPELLLEIATAADGDVRRALTLLEIAAELAGGEGGRITPQTLTQVLADRTRRFDKGGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPSYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAGYAAFNQAKADVRESGTEEVPLHLRNAPTKLMKELGYGAEYQYDHDAEGGIALDQTGFPDAMGERVYYNPVPRGLEIKLKEKLDRLRAEREAARAAKGR
>NZ_CP040439.1|WP_154263487.1|2504292_2504682_+|DUF805-domain-containing-protein
MQEMILPLKRYAQFEGRANRREYWMYQLFLFLVATAVMLLAGVLAILLRNSSDALAGILIGMVVLLCVMWLATIVPLIAVTVRRLHDCNQSGWLFLLALVPGGGIVIMIFSLLPGTPQENVYGPVPSGP
>NZ_CP040439.1|WP_154263488.1|2504755_2505130_-|hypothetical-protein
MKRTALIALSLGLLAPLAAHAAQDLPTLYQAFEEAGNSSLGMEELNQTVTFTAVALGVSSNLAGEPLIEAGDDQGNVLARLTTDDAQQAAKLGALEEGTVFTASCTLQFSSGTDYLSFGDCAIQ
>NZ_CP040439.1|WP_154263489.1|2505450_2506479_+|alpha/beta-hydrolase
MKHFVPPSRRGPLARGLAALMMGLLLATPYAHAQQRNPLQKIGHTVLDEPAASYRFEHFVVDSPDQQRRWRVNVAIPTKAGKAPLPVLYALDGNAVAMVLDQPLLAELAARKAPPVLVLIGYDNDLRIDSKARTRDYTAWIDRADDESGTTQAVGGGAAAFLDLIERRIKPEVERRARIDMQQQALWGHSLGGLFVLNALYTRPAAFQSYLAASPSLWWSQGAALGDPEQQFVQNVHGQPAKLWLMLGGAERVGDRGKRDMNNPRVVAHLRRIGGATPDAAMQLSGRLGKVPGLSVQYREFPGLGHGPMLPASFHAALHELYGVTDRSVGDGGPSGGDNAAE
>NZ_CP040439.1|WP_154352521.1|2506601_2507978_+|ATP-binding-protein
MSFRPSFRLTSLAAGLLLAVTATAQPVFDQPANATFKGQVVSRGENVVPGSTADVVGRGFVPGQKVSLLRGDSVLNAQPVVVDADGNFKTQLSIPADAVPGTHPVVVRASQPAAATVLKLRVSPQLPLSGQAQFATQSNKLVPGLYQSAYSAASNAVFVTSAVGRPPVTQSQLLKLDPKSLKVTKAITPAQVPGSTNGAVYAVYGVGVDDTNGNVWVTNTRQNSIAVYRQKDLSLVHQFPVDAVPHARDVVVDGTRGKVFASATGEDHLSVFDAKTFKELPAVTLESGVDDGKFTPMSLVLDEKAGKLFTVSIGTPEAAVIDVASGKVEKVIDLGNSISASGVAFDAARNRLYVASQGTDNLLIVDVAAGKVLHDVPVGAGALNVAFDDASGLAYVSNRGAGTVTVVNGDGKVVANLDGGTLPNHVRADGKGNVFAVNKSRGAEDPKGDRITRITPKQ
>NZ_CP040439.1|WP_154352522.1|2508029_2509076_+|ABC-transporter-substrate-binding-protein
MNIASRLRLCALPLAVSLALAACGGSSTPSDTGKLAEPAAATAAGEAALPAGWQRVAGTDMPAVRDQKAVLPAQVHSDDGADVEVADTSRIIAGGDDVIAVIEALGLDKQVFAAPTNTTTQAGLAAPHQFLFNRTTGVEGVLSLQGSLFLGNSLRRHTELAKKLREVGEPAVVIDDLQPAPDKVRKVAAALGLAEAGQALATQVQRQLDEAAAIGKGLGHAPRLIHVSATGAGGSPTVAGADSASAQLIALAGGVNIGTEAGVKNYSQLSNEGVVAAAPEVILVTEHDLQLFGGAEGLWKAYPTLKQTPAGQANRVWVMPDVQLKYTSVGSGAGALALAKALAALPKA
>NZ_CP040439.1|WP_154352523.1|2509072_2510116_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MSPADRRRRRGRTMLLVALLALLGAVLASFAVGPLRLPPLEVIQALAVKLGLLDPQAVSSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVSQGAALGAVAAIVLGAAGAAGWLVPVAAFAGGALAIGLTYALARPGKGTGNATLLLVGIAMAAFCSALIGLLTYIASESELQSLVFWQMGSLARANWADVAAVVPLFAIGVFALQRLATPLDMLALGERQAQHLGLDVPRTRRRLVAFSALLVGAAVAFAGSISFVGLVVPHVARLLVGPGHRWLLPFSGLLGALLIVVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQQRRKAAP
>NZ_CP040439.1|WP_154352524.1|2510112_2510874_+|heme-ABC-transporter-ATP-binding-protein
MSVLLKLHEVVVRRQQREILHGISLAFEPGTVTALVGPNGAGKTTLLAVAAGDLRADAGEVSLLGKPLAGYKAGPLARERAVMPQEHGVRFAFSVEEVVAMGRLPHPPDPAVDDAQVEAAIDAAELQALRLREVQQLSGGESARTTFARVLAQDTPLLLLDEPTAALDLRHQERTLRSVRACAEAGACVIVVLHDLNLAAGYADRIVLLEQGRVAADGTPLQVLTEDNLQRVYQQDVVVLEHPRRGVPLVVVT
>NZ_CP040439.1|WP_154352525.1|2510938_2511682_+|hypothetical-protein
MICFFPRGAVFAAMTAVAGVVSAAPATSISLMDATEQASLIESRHSSGEGAAVSSMSTRYYASDEMHFSWDGQQVLTLCEGAVYLRFPEGKPMMLTAEQRQMFAYQAMMSSLGAIAAVGAASGESLEVAADGSGTRSAGESPWAYGVERFDVTTQRMPDGAVRVHSRKTEIVNTTPPARPDDMFSTEDDQAARLSELAPVGSWTEVIVHEGPRLPHVDPAMSLKGWISMGDDQAATVGEARKLHKCK
>NZ_CP040439.1|WP_154352526.1|2512096_2514133_+|elongation-factor-G
MNTQVLSRRRNLGIIAHIDAGKTTLTERLLWKSGEIHRVGEVHDGNATTDFSAIERERGITIGAAAVQAQWAPRDLPPHRLTLIDTPGHIDFAIEVERSLRVLDGAVAVFSAVDGVQPQSETVWRQARRHRVPLIAFVNKMDRVGASFERVLEQLQDKLQARPWALGVPLGSESDFNGWVDLVDERVLHWQDGAVTTVTPWDAAARTVWQPQRDALVEAVADHDELLADAWLEGRAIDAEQLRAAIRRATLAGAGVPVLAGAAFKDKGIETLLDAVVDYLPSPLDRPAVTAESESGEVVLPPDPDGPLAGLLFKITHQQHGALSFVRLYSGTLKVGDAVASSQHPQGRRVSRLVRVQADQTHDIEQAVAGDIVAVLGWKDAVSGETLSGRAQPLRLESIQAQMPVLAWRLEPARAADLIRMAQGLASLAQEDPSFRVETDRDTAETLVWGMGELHLEVMVERLRSEWKVDVGVGAPRVAYQETPMRAMSGVVGRLVKQTGGQGQFAHVVLDVAPRDDDQVVFNDRIVGGVVPRSFIAAVEKGVRAALSEGPQGHPVVGIEVSLVDGQTHAKDSSEMAFHRAGAEAIKAALAEGGTQLLEPVMAVTVHSPSASVGDVVGDLNRRHGRITRIDDQDGRAEVSGFAPLAQLVGYTTSLRSLSQGRASSEAHLHGYEPVRVA

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Crispr_ID: NZ_CP040439_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040439_8

4251290-4251476

Orphan

Consensus_repeat	Method
GCGCCTCGGGCGCAGGCCAACCAAGGTTGGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040439_8

>merge|NZ_CP040439|8|4251290-4251476|CRISPRCasFinder
GCGCCTCGGGCGCAGGCCAACCAAGGTTGGCCTCTACCGGAATGGCGGCGGATGCGGTACGGGCGGCCGGGGCTGCGCCGCGCCTCGGGCGCATGCCAACCAAGGTTGGCTTCTACAGGTAGGTGCCAACCTTGGTTGGCACGGATGTGTCAGCGCCCGGTGCAAGCGTGTGCCAACCAAGGTTGGC

>NZ_CP040439|8|7|4251290-4251476|CRISPRCasFinder
GCGCCTCGGGCGCAGGCCAACCAAGGTTGGC	CTCTACCGGAATGGCGGCGGATGCGGTACGGGCGGCCGGGGCTGCGCC
GCGCCTCGGGCGCATGCCAACCAAGGTTGGC	TTCTACAGGTAGGTGCCAACCTTGGTTGGCACGGATGTGTCAGCGC
CCGGTGCAAGCGTGTGCCAACCAAGGTTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040439.1\|WP_154264446.1\|4236978_4238124_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
NZ_CP040439.1\|WP_049399252.1\|4252334_4252787_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|238612
NZ_CP040439.1\|WP_154353355.1\|4262087_4263461_-\|ATP-dependent-protease-ATPase-subunit-HslU	unknown	unknown	gnl\|CDD\|235364
NZ_CP040439.1\|WP_154353354.1\|4261039_4262032_+\|gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP040439.1\|WP_154264453.1\|4251493_4252255_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_CP040439.1\|WP_005419402.1\|4245412_4246459_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP040439.1\|WP_154264448.1\|4241569_4243645_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP040439.1\|WP_154353351.1\|4249262_4251191_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|341062
NZ_CP040439.1\|WP_032129008.1\|4258922_4260107_-\|multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit-SmeD	unknown	unknown	gnl\|CDD\|184990
NZ_CP040439.1\|WP_014038526.1\|4253322_4253649_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154264447.1\|4239188_4240283_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP040439.1\|WP_154353350.1\|4243648_4244134_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NZ_CP040439.1\|WP_005411093.1\|4263564_4264116_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NZ_CP040439.1\|WP_049421386.1\|4246742_4247681_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917
NZ_CP040439.1\|WP_154264451.1\|4248407_4249139_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154353352.1\|4252986_4253247_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154353353.1\|4254277_4255678_-\|multidrug-efflux-RND-transporter-outer-membrane-subunit-SmeF	unknown	unknown	gnl\|CDD\|182103
NZ_CP040439.1\|WP_154353654.1\|4247784_4248408_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NZ_CP040439.1\|WP_111202805.1\|4260334_4260994_+\|efflux-transporter-SmeDEF-transcriptional-repressor-SmeT	unknown	unknown	gnl\|CDD\|182632
NZ_CP040439.1\|WP_106469147.1\|4240460_4241573_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033

Protein	Function_ID	Function_description	E-value
NZ_CP040439.1\|WP_154264446.1\|4236978_4238124_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	6.60108e-137
NZ_CP040439.1\|WP_049399252.1\|4252334_4252787_+\|nucleoside-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	3.70705e-42
NZ_CP040439.1\|WP_154353355.1\|4262087_4263461_-\|ATP-dependent-protease-ATPase-subunit-HslU	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NZ_CP040439.1\|WP_154353354.1\|4261039_4262032_+\|gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	7.15738e-59
NZ_CP040439.1\|WP_154264453.1\|4251493_4252255_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	2.32597e-138
NZ_CP040439.1\|WP_005419402.1\|4245412_4246459_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP040439.1\|WP_154264448.1\|4241569_4243645_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP040439.1\|WP_154353351.1\|4249262_4251191_-\|aminopeptidase	gnl\|CDD\|341062	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain. This model represents the N-terminal catalytic domain of leukotriene A4 hydrolase (LTA4H; E.C. 3.3.2.6) and the close homolog cold-active aminopeptidase (Colwellia psychrerythraea-type peptidase; ColAP), both members of the aminopeptidase M1 family. LTA4H is a bifunctional enzyme, possessing an aminopeptidase as well as an epoxide hydrolase activity. The two activities occupy different, but overlapping sites. The activity and physiological relevance of the aminopeptidase is poorly understood while the epoxide hydrolase converts leukotriene A4 (LTA4) into leukotriene B4 (LTB4), a potent chemotaxin that is fundamental to the inflammatory response of mammals. It accepts a variety of substrates, including some opioid, di- and tripeptides, as well as chromogenic aminoacyl-p-nitroanilide derivatives. The aminopeptidase activity of LTA4H is possibly involved in the processing of peptides related to inflammation and host defense. Kinetic analysis shows that LTA4H hydrolyzes arginyl tripeptides with high efficiency and specificity, indicating its function as an arginyl aminopeptidase. Thermodynamic characterization using different biophysical methods shows that structurally distinct inhibitors of the LTA4H occupy different regions of the binding site; while some (RB202, ARM1 and SC57461A) bind to the hydrophobic hydrolase side, both bestatin and captopril are located at the hydrophilic peptidase side. LTB4H overexpression is associated with different pathological conditions and diseases such as cystic fibrosis, coronary heart disease, sepsis, shock, connective tissue disease, and chronic obstructive pulmonary disease. It is also overexpressed in certain human cancers, and has been identified as a functionally important target for mediating anticancer properties of resveratrol, a well-known red wine polyphenolic compound with cancer chemopreventive activity.	0
NZ_CP040439.1\|WP_032129008.1\|4258922_4260107_-\|multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit-SmeD	gnl\|CDD\|184990	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA.	6.77081e-116
NZ_CP040439.1\|WP_154264447.1\|4239188_4240283_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.5887e-142
NZ_CP040439.1\|WP_154353350.1\|4243648_4244134_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	7.01108e-29
NZ_CP040439.1\|WP_005411093.1\|4263564_4264116_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	1.18367e-120
NZ_CP040439.1\|WP_049421386.1\|4246742_4247681_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	1.14818e-117
NZ_CP040439.1\|WP_154353353.1\|4254277_4255678_-\|multidrug-efflux-RND-transporter-outer-membrane-subunit-SmeF	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	1.02766e-117
NZ_CP040439.1\|WP_154353654.1\|4247784_4248408_-\|HAD-IA-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	2.12183e-28
NZ_CP040439.1\|WP_111202805.1\|4260334_4260994_+\|efflux-transporter-SmeDEF-transcriptional-repressor-SmeT	gnl\|CDD\|182632	PRK10668, PRK10668, DNA-binding transcriptional repressor AcrR; Provisional.	2.52508e-35
NZ_CP040439.1\|WP_106469147.1\|4240460_4241573_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	9.67015e-147

>NZ_CP040439.1|WP_154353351.1|4249262_4251191_-|aminopeptidase
MRNPLMLLPLAVALAAGCSQEAAAPAAAPTAAKAPAAPVNAENRSHDESSYAQPDKVVIKDIALDLKLDFDQKQIGGTATYTLEWKQKDARQLVLDTRELTVSKVEAVAADGARSPLKFELAAADKVFGSKLTIEAPEQPAKVEVTYHTAPTASGLQWLAPSMTEGKKLPFMFSQSQAIHARSWVPLQDTPSVRFTYSAHVVSRPDVMVLMSADNDPKAARDGDYTFKMPQPIPSYLLAIAAGDLVFEPISGRSGVWAEPTMVNKAAKEFEDTEKMIGAAEKLYGEYRWGRYDMLVLPPSFPFGGMENPRLTFATPTVIVGDKSLVSLVAHELAHSWSGNLVTNASWKDIWLNEGFTTYVQGRITEALYGKEMAEMEKQIDQTDLLAEVKDMSPADQALALPPLNERDPDEALSQVAYVKGSWFLEFLEQRFGRETFDPFLRGWFDDHAFQSANTDQFVEYLKKNLLPKNPSAVTEAELKAWLDEPGIPAFAAKAQSRNFSSVDTARIAFASAGTVPSSQVIADWSTQEWVRFIDGLGATQPLDKLATLDKAFHFTGTPNGEIAMRWYPLAIRSGYEQANEGAAAFIERVGRRKLIMPIYAELVKTPKGLELAKQAFEKAKPGYHPITTASVQDMLAKAEAK
>NZ_CP040439.1|WP_154264451.1|4248407_4249139_-|hypothetical-protein
MKRLILLTACTLALAACSNPEEERKAQEAAAAAVQAQKEAKAEDVAKQYDMAVAAQDWERARLHGASLLDQYKDTAAAERIAAGFDEVKAKGDAARDLRRMQALWQYNQIPVGNKGNQVSAQIYSKERVDVDGSGAKPVQLVFRDHPEWKRHAYLVLQAGDFRCPQCTVKVTVDDGKPISMAAWRPKTDEAIALFITDQKALWKLARKGKSISIEFPVKAGGTRTAVFETGGVDASSMPQWWQ
>NZ_CP040439.1|WP_154353654.1|4247784_4248408_-|HAD-IA-family-hydrolase
MVAAGSAVHALSAIRHWVFDMDGTLTVAVHDFAAIRRALEIAAEEDILDHISALPDAPAQAKREWLLDHERALAEDALPAPGAVTLLRALAEAGCRLGILTRNDHALAKLTLDAIGVGELFDDADIIGRDEAVPKPSPDGLQQHLRRWGIGAAEAVMVGDHAYDLECGRAAGTHTVLVNLSENPWPGSADWHFADCRALLAAWQQKG
>NZ_CP040439.1|WP_049421386.1|4246742_4247681_+|carbohydrate-kinase-family-protein
MSALICGSLAFDTIMVFPDQFKNHILPDKVHILNVSFLVPRMRREFGGCAGNIAYNLHLLGGQPIPMGTVGSDFGPYREYFDGLGIDLSRVRVIDELFTPQAFITTDHDNNQITAFHPGAMMRSYENHVRGVPGVTLGLVGPDGREGMIQNAQEFHEDGIPFIFDPGQAMPLFNGPELREFIEQADYVVVNDYESNLLQERTGWDEKEIVSRVKAYITTRGPKGAVIHTPEKSYDIPPAHERRVVDPTGCGDAFRAGLIYGIQKGYDWLTIGRMGNLMGALKVEHPGTQNQRFTFDEFNEQFKQQFGYALGA
>NZ_CP040439.1|WP_005419402.1|4245412_4246459_-|rod-shape-determining-protein
MFKKLRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQDRAIGGTRSVAAVGAEAKQMLGRTPGHITTIRPMKDGVIADFTYTEAMLKHFIKKVHKSRVLRPSPRVLVCVPAGSTQVERRAIKESAEEAGARDVFLIEEPMAAAIGAGMPVTEARGSMVIDIGGGTTEVAVISLNGIVYSASVRIGGDRFDESITNYVRRNHGMLIGEATAERIKVELGCAYPQAEVIEMEISGRNLAEGVPKMIKISSNEVLEALHEPLSGIVSAVKLALEQTPPELCADVAERGIVLTGGGALLRDLDRLISEETGLHVQVADDPLTCVARGGGRALELVDMHGNEFFAPE
>NZ_CP040439.1|WP_154353350.1|4243648_4244134_-|rod-shape-determining-protein-MreD
MSRLRDNPWVLPASLVVALLLGLLPLPALLQPLRPYWLALVLAYWVIEAPERVGLGVAFASGVVADLLYGGVLGEQALRLVMLAFILQRFRARIRFFPMSQQMLAIGGLLFNDRIVSALVHIVVDEPTLPWSYWWAPLLGMGLWPLVFVLLDAVRFGKRGR
>NZ_CP040439.1|WP_154264448.1|4241569_4243645_-|penicillin-binding-protein-2
MIPRRQVKNPHAEAEQFRRRAALGFLGVLVCLLGLGGWYFKLQVLDHDVYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDVTPDKVKDMDATLEGLAKIISISPEELEAFNKSRKARRKFLPVTLKLRMSDEEMARFAVDRWRFPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEILGEGNAALTHIGKSGLERYYEQQLRGKVGYEQVETNVQGRAIRTIGRVAAQSGADLRLSIDADLQRAMVAAFGDQEGSAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHADFKALNDNPSRPQFNRLVLGGVAPGSTLKPLIGLAGLDSGVRRPEDKVLSTGMFYLPGTSRGWGDSHRGGHGWTDLRKSIAQSVNTYYYKLALDLGIERFDHYMEYYGFGQPTGIDLTGEIGGILPSPAYKRKSRKEAWYPGDTVNISIGQGDWKVTPLQLARGVSGLANGQLRTPHLVIQQRAGFDHDWMATDPGESKPISPNPNNLQAVREGMMATMLPGGSAARMAAGAPYTMAGKTGTAQVISRKGTAAVNPKSLPMHLRHRALFVGFAPVEQPVIALAIAVEGGGYGGAAAAPIARKVFDAYLLGKMPEGMQPLDSERGTTAIGATAFDNEDVGARQAGDLAAAQLGEHPVLVGVPAPEPAPAPQPGAPAAAPLPATPRPTTAEPAR
>NZ_CP040439.1|WP_106469147.1|4240460_4241573_-|rod-shape-determining-protein-RodA
MRVFLRWAGDMLRRFFSTLDWVLCLALGALMVIGLATLKSAGGDSLVMAQGVRFAVGMAALWGISRVPILRIRSATPMIYAISMIPLLAVFVLGTGKYGRQWLDLKFFYLQPAELLKVSLPMMVAWYLHKMPLPPRFNTVLVSLVIIGVPTGLVMLQPDFGTGVLIAASGVFVLLLAGLPWWWVGLGVGGVAAVAPVAWFWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGEGSQSHLNFIPEQTTDFAFSVLSEEFGWIGVATVLALYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVRSHNPVHGGYG
>NZ_CP040439.1|WP_154264447.1|4239188_4240283_-|rod-shape-determining-protein-RodA
MEWKRVFGICREAVRTIDLPLLLALLLLMAAGLAVLHSVSGPVAGQAARFAGGLLAMWLLSRVSLLRLRAWTPALYALSLLPLMAVYVIGTGKYGQRWLNLGVFYLQPSELLKLSLPLMMAWYLHRQPLPPSPRTVLTAAVLIGVPAVLILMQPNLGTATLVTASGVFALLLAGLHWGWVATGATGLAVAAPLAWFGLLRQYQKDRVLTFLDPAADPLGTGWNILQSRIAIGSGGWQGRGWGQGTQATLDFLPEYTTDFAFSVLAEEFGWIGVATLFALYLFVVGRCLWIAVHARDTHARLLAGSLGLAFFVYVLVNGGMISGLLPVVGIPMPLISYGGTSAVSLLAGIGLVMAVRGHRPVHGG
>NZ_CP040439.1|WP_154264446.1|4236978_4238124_-|lytic-murein-transglycosylase-B
MIRRTLACMLTLGLVACATQPKSPPSSPQASSTPRQPAAKAHGPAEAAPEAAAATAPPVDLTPVPFEVARARFIADTAKRYGLKPEQISSVLNQAQVRQPIIAAMSRPAERVKPWNEYRPMFISKARIDGGRAFLAQHRAELDRVQQRTGVPAEVIVAIIGVETSYGKNAGSHRVLDALYTLAFYYPRSGDPAKLEREVRRELFFRDELAKLFELGREENLDITTLKGSYAGAMGMGQFMPSSYLDYAVDGNGDGRRDLFTSYDDVFSSIANYFVKKGGWVRGGQVAVPATLAPGREEFNPTEWMPTWSLADLAKRGYQPSAAVQPGATATPITLEGSTGKQYWLGFQNYYAITRYNLSKMYAMAVFQLSQAIAGQELPPA
>NZ_CP040439.1|WP_154264453.1|4251493_4252255_-|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSESPYKAGTTHFGFRDVAAKDKQKLVGQVFTSVARNYDLMNDLMSLGVHRAWKRYYVATAQVKPGDRVLDLAGGTGDIAALLKERVGAEGSVVLGDINAGMLSVGRDRLTNRGLVLGLDYVQCNAEALPFPDNSFDLVTIAFGLRNVTDKDAGLREMYRVLKVGGQARVLEFSEVTADWFKPIYDFHSFKILPKLGKLFANDSDSYQYLAESIRKHPPQEELKAMMGQAGFERCHYKNLTGGIVSIHSGYKL
>NZ_CP040439.1|WP_049399252.1|4252334_4252787_+|nucleoside-deaminase
MITTPDYQALLQTAIAEARQGLAEGGVPIGAALYHNDGRLLGCGHNRRVQEGDPSVHGETDAFRKAGRQRRYQDTIMVTTLAPCWYCSGLVRQFNIGTVVVGESRTFQGGIDWLRENGVNVIDLDNQECVDLLGGFIAQHPEIWNEDIGE
>NZ_CP040439.1|WP_154353352.1|4252986_4253247_+|hypothetical-protein
MCAHAVRPTPDPILDAIRDRLQQQYALHQRGALFWTAYQGLQLELVRGHPLDHERLCNAMADIAEDLGAVEHAQLIGNRNAGSTSR
>NZ_CP040439.1|WP_014038526.1|4253322_4253649_+|hypothetical-protein
MHAEVPTIPPVINVDAELDHWRRQHADGALPHNSFGSYVPWIKFACDSLITQPRASNAQRDEMFQTQYALQIMPRLSEAQAREFVDRCWQHVYQTSPVRLQDAPRLRA
>NZ_CP040439.1|WP_154353353.1|4254277_4255678_-|multidrug-efflux-RND-transporter-outer-membrane-subunit-SmeF
MEVIPMKSASLFLSIAAALALAGCSTLVPKNTAVAPAIPAQWPAEAAQGEVADVAAVGWRDFFTDARLQQVIDQSLQNNRDLRVAVLNVERARGQYRVQRADRVPGVAVTGQMDRRGTDAGVTEQFTAGVGVAEFELDLFGRVRNLSEAALQQYFAVAANRRNAQLSLVAETATAWLTYGADAQRLKIADATLKTYEDSLRLAEARHERGGSSALELTQTRTLVETARTDAARLRGQLAQDRNALALLAGGPLDPALLPDSIEPQLLALAPPPAGLPSDVLLQRPDIMAAEHQLLAANANIGAARAAFFPSISLTGSIGSGSSELSNLFDSGTRVWSFLPKITLPIFQGGKLRANLAIANADRDIALAQYEKSIQVGFRETADALALNVSLDEQVSSQQRLVEAAEQANRLSQARYDAGLDSFVTLLDARRTAYNAQQTQLQAQLAQQANRITLYKVLGGGWHERG
>NZ_CP040439.1|WP_032129008.1|4258922_4260107_-|multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit-SmeD
MLLSRIRPFALSLAIAATVAACGGQPQAPEQGPGDVTVVTLKSETVGLTRELPGRTNAFLVAEVRPQVNGIVAKRLFTEGGMVKAGEPLYQIEDASYRAQANSARAQLARAEATANAARLSAKRITELAKVDAVSQQDLENAVAAQKQAEADVGAAKASLDAANVTLGYARITAPISGRIGKSSVTQGALVSAGQANALATVQQLDPIYVDLTQSSAELLQLRRELAAGRLQDNQTLPVSILMEDGSTFEHKGTLEFSEVSVDPATGSFGLRVKVDNPDGLLMPGTYVRAVIGGGVRSDAVLVPMAGIARDPKGDTSAMVVDKDNKVEVRPVKVSRTVGDKWLVEDGLKAGDKVIVEGLQKIGPGMPVKATEKGAAPAKPAAAAQPAAPAGDAK
>NZ_CP040439.1|WP_111202805.1|4260334_4260994_+|efflux-transporter-SmeDEF-transcriptional-repressor-SmeT
MARKTKEDTQATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPFMQELERTSTDQRDTPVHDLRAVMIHSFIELSEDERLRKTMEIMLRSDASADTKVLTEMQQAGFRDALDRMERALRRARDLGQLREGADPKIAARMLHATVLGVLHGAMVEPELMDLKRDGMLALDMTLAAYVKEGVFVPGTVPEPLPEA
>NZ_CP040439.1|WP_154353354.1|4261039_4262032_+|gfo/Idh/MocA-family-oxidoreductase
MILDNVVWGFIGCGSVTEKKSGPALANTPGSRVAAVMRRNAALAEDYARRHAIPRWYADADALIADPEVNAIYVATPPSTHMHYALQAIAAGKPVYIEKPMAMDHGECQRIIEASARSGVPVFVAYYRRALPRFAQVKQLLDSGAIGTPRSVRATLHRPHSASAASPDFWRTNPAIAGGGLFVDLGSHTLDLLDHLLGPLSDVRGLASSLTGAYVAEDSVSMCFRTGTGAHGIAQWSFCAFRRQDEIEITGDRGQLRFATFEDVPVELETETGVQRFDIPNPPSIQQPLIASLVDELRGSGHSPSNGVSAARTSAVIDQVLQAYRTRHTR
>NZ_CP040439.1|WP_154353355.1|4262087_4263461_-|ATP-dependent-protease-ATPase-subunit-HslU
MSKIEVSSATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLVPELRNEVMPKNILMIGPTGVGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQAEERAEDRILDALLPRRSGGIGFDPEVARNEPSAQDNETRIKFRRMLRNGELDEREIELDLAANVSMDIMTPPGMEEMGQQLKSMFANLGGGAKAHKRTLTIKAARPLLIEEEAGKLVNEDDIRTAAIEACEQHGIVFIDEIDKVAKRGDNVGGGDVSREGVQRDLLPLVEGSNVSTKYGTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKGDFVRILTEPKAALTKQYEALLATEGVKVSFTADAIDRLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPDRDGETLAIDSAYVDAHLGELVQDPDLSRYIL
>NZ_CP040439.1|WP_005411093.1|4263564_4264116_-|ATP-dependent-protease-subunit-HslV
MDPSQNPNVFHATTIVCVRRGEHVAIAGDGQVTLGHTVMKGNARKVRRLGRDGQVLAGFAGAAADAFTLFELFEAKLEKHGQLQRAAVELAKDWRTERRLGKLEALLAVADKETSLIISGTGDVIEPEDGIIAIGSGGSYALSAARALMAHTELDARTIASEAIGIAGDICIYTNRNVVVEEL

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Crispr_ID: NZ_CP040439_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040439_9

4693620-4693725

Orphan

Consensus_repeat	Method
GTGTGCCAACCAAGGTTGGCACCTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040439_9

>merge|NZ_CP040439|9|4693620-4693725|CRISPRCasFinder
GTGTGCCAACCAAGGTTGGCACCTACCGGGGCCCACGAGACATGGTAGAGGCCGACCTTGGTCGGCGCTTGCCGATTGTGTGTGCCAAGCAAGGTTGGCACCTACC

>NZ_CP040439|9|8|4693620-4693725|CRISPRCasFinder
GTGTGCCAACCAAGGTTGGCACCTACC	GGGGCCCACGAGACATGGTAGAGGCCGACCTTGGTCGGCGCTTGCCGATTGT
GTGTGCCAAGCAAGGTTGGCACCTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040439.1\|WP_152906641.1\|4687741_4689826_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_049441981.1\|4683985_4685239_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NZ_CP040439.1\|WP_046984209.1\|4681024_4682977_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372641
NZ_CP040439.1\|WP_154264701.1\|4703052_4705029_-\|cytochrome-o-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131890
NZ_CP040439.1\|WP_010482106.1\|4698037_4698478_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226695
NZ_CP040439.1\|WP_154353490.1\|4694727_4695390_+\|exopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|368723
NZ_CP040439.1\|WP_005411473.1\|4702086_4702419_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|131894
NZ_CP040439.1\|WP_132808894.1\|4695450_4696413_-\|transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP040439.1\|WP_154353491.1\|4696734_4698045_-\|sorbosone-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|225044
NZ_CP040439.1\|WP_049441978.1\|4679542_4680100_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP040439.1\|WP_049400824.1\|4698788_4700555_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173789
NZ_CP040439.1\|WP_141098037.1\|4685819_4687742_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271178
NZ_CP040439.1\|WP_154353489.1\|4691005_4693324_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP040439.1\|WP_046984168.1\|4680561_4680846_-\|CnrY/NccY-family-anti-sigma-factor	unknown	unknown	gnl\|CDD\|340239
NZ_CP040439.1\|WP_006399785.1\|4700554_4701148_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154264695.1\|4693744_4694578_-\|sugar-phosphatase	unknown	unknown	gnl\|CDD\|182509
NZ_CP040439.1\|WP_046984169.1\|4680115_4680562_-\|periplasmic-heavy-metal-sensor	unknown	unknown	gnl\|CDD\|379377
NZ_CP040439.1\|WP_046984166.1\|4685337_4685784_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154353488.1\|4690508_4690895_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040439.1\|WP_154264700.1\|4702420_4703056_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|182628

Protein	Function_ID	Function_description	E-value
NZ_CP040439.1\|WP_049441981.1\|4683985_4685239_-\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.38389e-18
NZ_CP040439.1\|WP_046984209.1\|4681024_4682977_-\|hypothetical-protein	gnl\|CDD\|372641	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	1.66949e-14
NZ_CP040439.1\|WP_154264701.1\|4703052_4705029_-\|cytochrome-o-ubiquinol-oxidase-subunit-I	gnl\|CDD\|131890	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	0
NZ_CP040439.1\|WP_010482106.1\|4698037_4698478_-\|hypothetical-protein	gnl\|CDD\|226695	COG4244, COG4244, Predicted membrane protein [Function unknown].	5.17614e-12
NZ_CP040439.1\|WP_154353490.1\|4694727_4695390_+\|exopolysaccharide-biosynthesis-protein	gnl\|CDD\|368723	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD. Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion.	1.04593e-41
NZ_CP040439.1\|WP_132808894.1\|4695450_4696413_-\|transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	8.06432e-24
NZ_CP040439.1\|WP_154353491.1\|4696734_4698045_-\|sorbosone-dehydrogenase-family-protein	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	5.50277e-96
NZ_CP040439.1\|WP_049441978.1\|4679542_4680100_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.41251e-29
NZ_CP040439.1\|WP_049400824.1\|4698788_4700555_+\|S8-family-serine-peptidase	gnl\|CDD\|173789	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.	8.5757e-102
NZ_CP040439.1\|WP_141098037.1\|4685819_4687742_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271178	cd00797, INT_RitB_C_like, C-terminal catalytic domain of recombinase RitB, a component of the recombinase trio. Recombinases belonging to the RitA (also known as pAE1 due to its presence in the deletion prone region of plasmid pAE1 of Alcaligenes eutrophus H1), RitB, and RitC families are associated in a complex referred to as a Recombinase in Trio (RIT) element. These RIT elements consist of three adjacent and unidirectional overlapping genes, one from each family (ritABC in order of transcription). All three integrases contain a catalytic motif, suggesting that they are all active enzymes. However, their specific roles are not yet fully understood. All three families belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism.	0.000845557
NZ_CP040439.1\|WP_154353489.1\|4691005_4693324_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.35691e-22
NZ_CP040439.1\|WP_046984168.1\|4680561_4680846_-\|CnrY/NccY-family-anti-sigma-factor	gnl\|CDD\|340239	pfam17524, CnrY, anti-sigma factor CnrY. This family is found in alpha and beta proteobacteria. Family members include anti-sigma factor CnrY from Cupriavidus metallidurans. Sigma factors are multi-domain sub-units of bacterial RNA polymerase (RNAP) that play critical roles in transcription initiation, including the recognition and opening of promoters as well as the initial steps in RNA synthesis. They also control a wide variety of adaptive responses such as morphological development and the management of stress. A recurring theme in sigma factor control is their sequestration by anti-sigma factors that occlude their RNAP-binding determinants. CnrH, controls cobalt and nickel resistance in Cupriavidus metallidurans. CnrH is regulated by a complex of two transmembrane proteins: the periplasmic sensor CnrX and the anti-sigma CnrY. At rest, CnrH is sequestered by CnrY whose 45-residue-long cytosolic domain is one of the shortest anti-sigma domains. Upon Ni(II) or Co(II) ions detection by CnrX in the periplasm, CnrH is released between CnrH and the cytosolic domain of CnrY (CnrYc). The CnrH/CnrYC complex displays an unexpected structural similarity to the anti-sigma NepR in complex with its antagonist PhyR, whereas NepR shares no sequence similarity with CnrY. Crystal structure of CnrH/CnrY shows that CnrYC residues 3-19 are folded as a well-defined alpha-helix. The peptide further extends along the hydrophobic groove of sigma 2 with no canonical structure except for a short helical turn spanning residues 24-28. CnrY has a hydrophobic knob made of V4, W7 and L8 side chains protruding into sigma 4 hydrophobic pocket and contributing to the interface. In vivo investigation of CnrY function pinpoints part of the hydrophobic knob as a hotspot in CnrH inhibitory binding.	2.34741e-08
NZ_CP040439.1\|WP_154264695.1\|4693744_4694578_-\|sugar-phosphatase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	2.68225e-175
NZ_CP040439.1\|WP_046984169.1\|4680115_4680562_-\|periplasmic-heavy-metal-sensor	gnl\|CDD\|379377	pfam13801, Metal_resist, Heavy-metal resistance. This is a metal-binding protein which is involved in resistance to heavy-metal ions. The protein forms a four-helix hooked hairpin, consisting of two long alpha helices each flanked by a shorter alpha helix. It binds a metal ion in a type-2 like centre. It contains two copies of an LTXXQ motif.	4.79615e-14
NZ_CP040439.1\|WP_005411473.1\|4702086_4702419_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|131894	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	3.92143e-34
NZ_CP040439.1\|WP_154264700.1\|4702420_4703056_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	gnl\|CDD\|182628	PRK10663, PRK10663, cytochrome o ubiquinol oxidase subunit III; Provisional.	3.96664e-101

>NZ_CP040439.1|WP_154353489.1|4691005_4693324_-|TonB-dependent-receptor
MNTPPTTRLALAIIAAITAPAYAAETHDAAHDTPTTLNALQVIATPRGAAVAPTQVVGPNRYIIKAEDLDAMVTGNNGLAMLKQVPGASYTATDGLGLDISATSLFVRGFRMNEMGITFEGVPLNDNGFLSLTGTSVVNVGVPDGIGAITVSPGGAPVSVFSSSVNGGSLEYRLRELQDTPSLRVKQGVGSNSTLVTTVSGQSGQLGEHGPKVLVDLQRVSADKYQGEGTQNFLRGDLKLQQDVAWGDFTVFLSDSKAKVWGYNNISFDMIRKLGWKADIFYPDYAWAWYVASPENADKSCGAYTCGELSELIPYDTGQITRDRVSSINHRFQISPALSGNVQLYNANSHTQATLTDPTVPSPNGAPFSEQVQTPRVNRLGGMLNLQFETGAHTFTAGVWQEKSKAAAKTEWYQQPLLGEGPPLKATGPFDVYGPAFKTDNASSWVTRSRQFYLQDDIVLNDTLKLGVGFKAVDFRTSGGGLGDAKDRPVNGTLRAKSNFLPHVSLFWSPTESTDAFIDLANTMNGYRVAQRGNIGYTASAWTITDQEEFDRVAGTLRPEKNRNLTVGASHRFDRLTITGDVFYNDIRNRLLSAAIGTQFAQINTVRLMPKMHVIGADLGITADLTDHLQFYQGVAVARSYYDSDFVVGDTVYPIKGNAQPGYPQISLVSDLSAHFGDWRFGATSTSYLRQPFTYENDIRVPTFWQVNTYAAYRFGADSAVPGLELRLDVSNLFNRHNIGTATIAGSSFSGDYQTLQRSAPRQLMFSTSMAF
>NZ_CP040439.1|WP_154353488.1|4690508_4690895_-|hypothetical-protein
MLLGHPVGMAQHNPRTLLFGIRGPGRPRQALSVAPAIDLRAEYQFWQVYERVVRPLPGGGLRLAWLVCQKVYRDRWQHPHDSDEAALSRVLFGGNMTADRASELAELHALVSRRVASLAKRGRVDSAA
>NZ_CP040439.1|WP_152906641.1|4687741_4689826_-|hypothetical-protein
MATRKKKGVGEVQTGPDGLWITVRAIGRAHGVASIDFTFLRSWIGPRGQAAFVDAIVKLSRRYVAAQNTYSVRCVLQFWQALGARRGWPAPSRRISSAALVAQLSDLRGEFYAARAAVGVALTTITNQWTSFVRFIPCLVQTGAINFVESKLAAISAPPRALIIADREHAANSPVCLNNAPKTLNSAQNSYNDNLFESISIVDGSAEYLDRYQEKLGKAVNTILHCAVKDFEEFVAQRERGLAEISRFDVGSLHELKAHRRGGFSRENWGHLLNQERYEKGLRIALGICVFDMGGIPRQRRKFDVKSSKASILDGSSRIWDFVSSFGKNELLPYLGIMSSKQAAVCILILLIEHPILNPVALYRARIERDRHGGTYISSDGLVGKGGIRFSVEKLRAGEEKSVELSPLAQRVLVKVFEWTEPVRTRMIQEGRRKDANHLWIGISSLDYRLKAFSEKAFLNALGASEAWRSVRGAGMVTRATNFGERHAELAPWREKLTYKNLRMNSGVLKFLEADGDLVVAARIFGHRSVKTTLGHYVPNALRIALFERQVRRHQNRLIVQAFSDHERLLEVSDFSTVEDLHLFLSGSADEAAEAQVPRRVYKAASPGAGLILCKDPDALAVAMLYRDRLESASATFLDRPDLRTGVAPRFWRDFVDALTAPLPPALIEITDLVECALARKTVIISRIRLPEIR
>NZ_CP040439.1|WP_141098037.1|4685819_4687742_-|tyrosine-type-recombinase/integrase
MAQLPSEVLSFFSRTQTGLSPLVRPWWLKSAVHESVWRVETGKRDLRQVGEKSRGGQVLRWDLLLPTGRLSTSSHAVICEQCKALIIAVAKVRGSTRSLRSVHGALFLFAEFLALKYEEKFLRDGLLVAHLDDVEAFMESYAEAGSCGTGRFIERLSSYLSAEIPLERLDADEVRNHFGLTETNQLSLVAIGAAISVDWQRLRSSPAFRSHLTQYGYRGERDLSRGARTTSGYADIFPLLAQASHSVQTLSAWALSNVREVRDACRPFRREQSGRTATLPPTVCRQFVRSACAWMLEEAPALEAHLAGLIDEIAQSGDLGHRSPTALLKDAEALIETGPLVRCSRFVSQRFRERGDDRYCDLEPYRLFPLVLGLIRIHLGVCFGLVALFACARRSEIIDMGLHALLTSDGRYHLTIHQAKRGEGNERPRFDKPVPRIVAMAISIMNNLRTQLLRVMPREDSLLDDRVMFFVGMQGIRPFSENHPRVVLQLISDYFDLRGPDGKRWVLEPHQLRRSFAMTFFHSEGEESSLPALAWLMGHHDVEETWRYVKESMTGKEISHAEACLAMAAVNSGDGSESAQKLKALLLEHFGSDDLAVLDHDDVLEYLEMLSEERKISVKPIQITTGDRSTFTILISHRGE
>NZ_CP040439.1|WP_046984166.1|4685337_4685784_-|hypothetical-protein
MRDKQLRAERSVRGIIAILDEAVAVGSLLEEHSDLFRRMSDLAGMNDEARGIFPMSVRTLRNNVESLYPGGMEAFRRAIGELLGAARKPVAQQEDEAWLEDAVLDMTARYSDLVQRFKRLALGSEVAADELKRHFDRYRGSSSLRVVK
>NZ_CP040439.1|WP_049441981.1|4683985_4685239_-|site-specific-integrase
MKVVFFPNGRSCWEVNAYLVHCRRLGLTVGTISTYASELSLLVRFLYLRRLELREIDDDHLIEFADWLVVRDESSARHINRILSRVLAFIGWAECISLGPFQIGRLGEQAIITVERRVVRTKRLDRVSSDRHAAMLPSGAKRVVRPMPLEVFRRLLAQCERSAKRTFVKSRNRAMLLILADTGIRREELVWIRVTDVLDASKGDGMLKVRTSKRRGNPIRLVPVPALTLQEVMKYIRVQREMHMRRHTKSGRGSRDKGWVFCSQSGSRLAAATVSQTFSDLRALAGVSERATAHMLRHRYITLQVIDRIKRLRNIGILGVEAAATVLAQVASLSGHSNPTSMWDYIDWAYQEMASDAENRGTLEIGELIRELEVFGEAAIESSEGRALLSRVRSALASQLEKAPKLGVLAHQGMGLG
>NZ_CP040439.1|WP_046984209.1|4681024_4682977_-|hypothetical-protein
MDKKGKAANQALFEEDYVLRSLGRIGYDPDMALTELVANTWDAGAARVAVIIPEETSGMLSVEDDGHGMTEDQFRKRWMTLGYNRHRSQGANVQFPSERDDWVRMAFGRNGIGRHGLLCFSDHYTVETWTNGVLSTFVIGTRNQPSPFYIQSHETATRSGHGTRLLVEVERHRPDPDRIRTVLSGRFLHDPQFVVSVNGQSVPLSEHEGLLEERKIQVEPGFDVTAYVVDTTRTAKSTRYQGVAFWVSNRLVGLPSWTVGPMVVLDGRVRFAKRYALVIECGSEWLSEIEPDWSKFKTTERTDHLFEAANGYAQEMVEKLSAHLIEENSEDALYKNREDLRTLPRRSMLEVAQFTKTVVHDQPGIPPETLNKVVKAVIKIQKARSGSSFLDKLMQLDEHDIDGLDRLLGQWTVEDALTVLDEIDSRLSIIAAMEKLSGDPEADELHTLHPLVTQARWLFGPEFDSSEYASNNTLRTVATSLFKARKQNQTFANAAKRPDIVVLSDATLSIVGTESFDTGKDQLVMMRDVLLIELKKGRSEIGRKEMNQAAEYVDELVSSGGIQGGPFFHAFVVGHSVASNIPTVNNREYNGAQRGRVTATTYNQLALTANRRLHGLKARIPSRYEEVSGYELVQKVMGTPSQASFAPLAE
>NZ_CP040439.1|WP_046984168.1|4680561_4680846_-|CnrY/NccY-family-anti-sigma-factor
MNNLDDWLAKAANATRADASAGTDALLARLAQEPPPAKWAGRRELRRAVTCAALSAVLTCGGVGSAFLVTQSNPRPTWVAAPSAMSPYALLVER
>NZ_CP040439.1|WP_046984169.1|4680115_4680562_-|periplasmic-heavy-metal-sensor
MAIGTAMRLPLATLAGAVIGVVCALGIGWGWHYLNPGHSDLHERLHAVVPLDNSEKDILQAKEQLFATRRGEIEARLRIANRQLADAIAADPRWSPQVEAASREVERAAGDLQRITLEHVFEMRAGLKPDHRAAYDKALLDALRNDSP
>NZ_CP040439.1|WP_049441978.1|4679542_4680100_-|sigma-70-family-RNA-polymerase-sigma-factor
MTIEEDNNWAVEAAAGDPAAFARLVRRHSPAITQMVRGMGVPETDVDDVVQETFVSAWRALAEYDPARPVLPWLMRIGINKVRDTQRFRRVRYFLFKARPIDDEEGRTLVSDQAGPEQSASSSLELASVMRVLDSIDPALREALVLTAFVGLSQVEAAAALGISLKTIEGRVLRARAKLASALGR
>NZ_CP040439.1|WP_154264695.1|4693744_4694578_-|sugar-phosphatase
MDMGRRQSTIELVAIDMDGTLLDPTHTLTARAKRAIAQARALGVHIVLTSGRPVPGLAPFLHELGITGDDDYCIACNGGLVQRIGTRETVVEYPLSFDDFLFCEQVARDLGVHFQALDSQRMYTPNQDISYYTVADSHLSRMPLSYRRVADMDPSMSFIKLMMIDAPDVLDAAIARLPSELTERFAVLKSAPFFLEVFDHRAGKGPSLQKLAEHLGIDRANVMAIGDQENDLTMLQYAGTSVAMGNAIDAVKAVARFETTSNADEGVARAIERFVLQ
>NZ_CP040439.1|WP_154353490.1|4694727_4695390_+|exopolysaccharide-biosynthesis-protein
MTYRAPETNDSAPLAQQIEQMIEELPGDQVRVGTLLSALGDEGLLLIVILLSAIFIIPVSIPGLSTVFGASILLIGLSRVRDRPLWVPQKLARREIATGKLKANLGRALKWVHRMERLSRPMRLAVMVRSKKMMRLNNLMLVFATLLLMAPAGPIPFSNTLPALALMSFAIGFIQRDGAAVAAGYGFVVATVVYFGVLLGGVGFAAESVFSGLRAAPSEV
>NZ_CP040439.1|WP_132808894.1|4695450_4696413_-|transposase
MSDSLDIGVDVDSKEFVPAVADRKAGDRIANTRAGIAQWLNTLPQRCRIGMEATGRYYELLARMAGQAGHVVYVINPRLIKHYGRATGSRGKTDAMDAEAIARYVKKENDRLREYVPRTDEQQQMHDLLRKRQTLVKTRARLEQSFGVSKSAPGELSDLFCALAGTLSELESELQRLGRDGEHGTLYKRLLTIPGIGPAVAAHLIYYMTRWPLANANAWIACTGLDPRPNESGGRTGRRRLSKQGAPVLRQMLYMAAMGLKRCRRGQPLYDELSKRGHPSTAVFNILARKLARIAWGVFKSGRDFDPAMLKVGQACFQQA
>NZ_CP040439.1|WP_154353491.1|4696734_4698045_-|sorbosone-dehydrogenase-family-protein
MAEHILPTIGALALAVMLSACAGKAEYHPADQSGAQPPLPAPKNFLMPPMQVPKGVGWAEGQSPTVAEGLKIERIAANLQHPRRLLTLPNGDVLVVEGNGPGEEPVTTPKQWIAGKVKARSGKAGKGGNRVTLLRRAPGTSTWTQHVYIEGLHSPFGIQLIGDTLYVANTGNIIQYHYVPGETRMSDKGREFTDLPSTINHHWTKELLASRDGRKLYVGVGSNSNITENGLAVEYRRAVVLEVDVATRGSRIYASGIRNPTGLDWEPSTGKLWAVANERDEIGADLVPDYLTSVKEDGFYGWPYSYYGQHVDERVQPQRPDLVAKAIVPDYAIGSHVAPLGLLFYTGQALPAQYHGGAFIGEHGSWDRSPLSGYEVVYVPFKDGKPTGRPQTVVSGFASKDEKTLMGAPVGMAMDAEGALLVADDVGDVVWRVSAK
>NZ_CP040439.1|WP_010482106.1|4698037_4698478_-|hypothetical-protein
MVNPLAQAHRGLGTTLFSLLNPIPFGFFVGALIFDAIYLNSAEVMWGKAAAWLITFGLLIAIIPRLINLFTVWRRNGTATRIDRIDFFLNLVAVVLAIWNAFVHSRDAYAVAVPGTILSALTVALIALGLILLSLQPPVLQGGRHG
>NZ_CP040439.1|WP_049400824.1|4698788_4700555_+|S8-family-serine-peptidase
MKRHTQRSAPPRSARLALATALVLGSLAVTAQAQQADPLAGRQWHLLNTGQAVLGDTLPVAGNDLNVDGLFRNGIRGQGVTIAIVDDGLQIAHPDLAANVAAVAGKNFANQSNNPSPSNPDRDNHGTMVGGIAGAVGANNLGVRGVASAATLKGFNFLASNAQGNSNSNIEYSWWDGAEVADVGVFNNSWGSSPGNPNLPLAYSQNDIAAYEQAMSGTRGGRGGIYVKAAGNNHNNGARSDGTDICSADTKNRNTGCIPAGRDPRNNLFNVITVAAVRADGVRSSYSSTGSALWVSGFGGENGWQRQVVPGQLAIRYDPAILTTDVTGCAQGSNKNTSLRNTLDGDQSAIDSTCNYTGKMNGTSAATPMVSGVAALLLETNPNLSYRDVKYILATTATRTDPNRAAVTHSDGRVLVPGWTVNAAGRAYSNWYGFGVVNAARAVQVAEDFQPLGALVDSGWRNTTRTVAIGNTSAAAARLTFQLANGARNIESVQLGFRVNHSNTRQLQFVLISPSGTRSVVQPAFTAIGSGLNGVQRNFTNWDLLSSNAFLDENATGTWTLEVTDLGQAANAASRGNLEFFKIRVLGH
>NZ_CP040439.1|WP_006399785.1|4700554_4701148_+|hypothetical-protein
MMKTTILLSTLALAAMTTTAWAQSSGQTPPAKTLSTVDTQQLKAEATGRSFNVGGSRFQLAPSATVQQASGGQFRITTGADASAAAVGTRSKRSTDASTGVAARADAGASKFAAAVSNDGAPVVATSRVKVFFTDAASAQRAATATGGTVVKVSKASGRAIVEYPSVNAALDATTKLLSTAGIKAAEPDVVQWEETK
>NZ_CP040439.1|WP_005411473.1|4702086_4702419_-|cytochrome-o-ubiquinol-oxidase-subunit-IV
MAHVETSRAGNAHGSTKSYLIGFVLCALLTVVPFALVMNPVLSRPLTLFLLVGFAVAQILVQLVYFLHMDRKSEGGWNLASFVFTLVILFIIVALSVWIIWSMHYHMMIN
>NZ_CP040439.1|WP_154264700.1|4702420_4703056_-|cytochrome-o-ubiquinol-oxidase-subunit-III
MNLLTRPELASDTQAHEHDHEHDHGHEQGGMKVFGMWVYLMSDLVLFGSLFASYAVLSTAYAGGPTGKDLFSLPFVMAETFLLLVSSITYGQAVLAMHRHDTSAVLRWLGVTFVLGASFIGMEIYEFSHLIHEGAGPSTSAYLSAFFALVATHGLHVASGLIWMAVVMHQVYRRGLTPTNITRVSCLSLFWHFLDLVWICVFTFVYLIGAF
>NZ_CP040439.1|WP_154264701.1|4703052_4705029_-|cytochrome-o-ubiquinol-oxidase-subunit-I
MLGKLTWEAVPLHEPIVVVTLAAMVLGGFALLGAVTYFKLWGPLWRDWFTTVDHKKIGIMYVVVALVMLVRGFADALMMRAQLAAAGPGSDGFLPPEHYDQIFTAHGVIMIFFVATPFVVGLMNIIVPLQIGARDMAFPFLNAFSFWIFVVGAALMMISLGVGEFAMTGWVAYPPLSGIEFSPGVGVDYYIWALQASGIGTLLTGVNLFITILRMRAPGMTLMKMPVFTWTVLVTSVIIIAAFPILTVALGALTLDRYLDFNFYTNTLGGNPMMYVNLVWAWGHPEVYILVLPAFGIFSEVTATFARKKLFGYKSMVGATLAIGILSFIVWLHHFFTMGSGASVNAFFGIMTMIIAIPTGVKIFTWLFTMYGGRVEFSVPMLWTIAFLVTFTIGGMTGVLLAIPGADFLLHNSLFLVAHFHNTIIGGALFGYLAGFAYWFPKVFGFTLNERLGKWSFACWVIGFYLAFMPLYMLGFMGMTRRMNQYDNPAWTPYLIAAFIGALFVFAGIILMLVQIYVSVRDRKRNLDLTGDPWNARTLEWATPSPPPFYNFAVVPKADELDAFHEAKKRGLPPPPKKYAPIHMPKNTGVPLILNIWILVLCFALVWHIWWMAAASFIAMIVTLIVRSYDEDVDYYVSSEEVARTEAANLAKLKEVRA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040439_4	4.2\|749886\|33\|NZ_CP040439\|PILER-CR	749886-749918	33	NZ_CP040439.1	749945-749977	0	1.0
NZ_CP040439_6	6.1\|1586286\|25\|NZ_CP040439\|CRISPRCasFinder	1586286-1586310	25	NZ_CP040439.1	1586196-1586220	2	0.92

1. spacer 4.2|749886|33|NZ_CP040439|PILER-CR matches to position: 749945-749977, mismatch: 0, identity: 1.0

ctggtaggtgccgagcttgctcggcacgctctc	CRISPR spacer
ctggtaggtgccgagcttgctcggcacgctctc	Protospacer
*********************************

2. spacer 6.1|1586286|25|NZ_CP040439|CRISPRCasFinder matches to position: 1586196-1586220, mismatch: 2, identity: 0.92

cttgccttcgccacacttgccttcg	CRISPR spacer
cttgccttcgccgcacttgccctcg	Protospacer
************.********.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040439_6	6.1\|1586286\|25\|NZ_CP040439\|CRISPRCasFinder	1586286-1586310	25	NZ_CP032344	Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence	97983-98007	3	0.88
NZ_CP040439_6	6.1\|1586286\|25\|NZ_CP040439\|CRISPRCasFinder	1586286-1586310	25	NZ_CP033317	Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence	21557-21581	3	0.88
NZ_CP040439_6	6.1\|1586286\|25\|NZ_CP040439\|CRISPRCasFinder	1586286-1586310	25	NZ_CP022365	Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence	24848-24872	3	0.88
NZ_CP040439_6	6.1\|1586286\|25\|NZ_CP040439\|CRISPRCasFinder	1586286-1586310	25	NZ_CP033323	Azospirillum brasilense strain Cd plasmid p5, complete sequence	46675-46699	3	0.88
NZ_CP040439_6	6.1\|1586286\|25\|NZ_CP040439\|CRISPRCasFinder	1586286-1586310	25	NZ_CP012919	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence	85464-85488	3	0.88
NZ_CP040439_6	6.1\|1586286\|25\|NZ_CP040439\|CRISPRCasFinder	1586286-1586310	25	MK903280	Stenotrophomonas phage Ponderosa, complete genome	12154-12178	4	0.84
NZ_CP040439_4	4.2\|749886\|33\|NZ_CP040439\|PILER-CR	749886-749918	33	NZ_CP048424	Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence	180111-180143	8	0.758
NZ_CP040439_4	4.2\|749886\|33\|NZ_CP040439\|PILER-CR	749886-749918	33	NZ_CP039697	Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence	140155-140187	10	0.697

1. spacer 6.1|1586286|25|NZ_CP040439|CRISPRCasFinder matches to NZ_CP032344 (Azospirillum brasilense strain MTCC4038 plasmid p5, complete sequence) position: , mismatch: 3, identity: 0.88

cttgccttcgccacacttgccttcg	CRISPR spacer
attgccttcgccactattgccttcg	Protospacer
 *************  *********

2. spacer 6.1|1586286|25|NZ_CP040439|CRISPRCasFinder matches to NZ_CP033317 (Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence) position: , mismatch: 3, identity: 0.88

cttgccttcgccacacttgccttcg	CRISPR spacer
attgccttcgccactattgccttcg	Protospacer
 *************  *********

3. spacer 6.1|1586286|25|NZ_CP040439|CRISPRCasFinder matches to NZ_CP022365 (Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence) position: , mismatch: 3, identity: 0.88

cttgccttcgccacacttgccttcg	CRISPR spacer
attgccttcgccactattgccttcg	Protospacer
 *************  *********

4. spacer 6.1|1586286|25|NZ_CP040439|CRISPRCasFinder matches to NZ_CP033323 (Azospirillum brasilense strain Cd plasmid p5, complete sequence) position: , mismatch: 3, identity: 0.88

cttgccttcgccacacttgccttcg	CRISPR spacer
attgccttcgccactattgccttcg	Protospacer
 *************  *********

5. spacer 6.1|1586286|25|NZ_CP040439|CRISPRCasFinder matches to NZ_CP012919 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence) position: , mismatch: 3, identity: 0.88

cttgccttcgccacacttgccttcg	CRISPR spacer
attgccttcgccactattgccttcg	Protospacer
 *************  *********

6. spacer 6.1|1586286|25|NZ_CP040439|CRISPRCasFinder matches to MK903280 (Stenotrophomonas phage Ponderosa, complete genome) position: , mismatch: 4, identity: 0.84

cttgccttcgccacacttgccttcg	CRISPR spacer
tttgccttcgccagacgtgccttca	Protospacer
.************ ** *******.

7. spacer 4.2|749886|33|NZ_CP040439|PILER-CR matches to NZ_CP048424 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

------ctggtaggtgccgagcttgctcggcacgctctc	CRISPR spacer
gagcggctg------gccgagattgctcggcacgcgctc	Protospacer
      ***      ****** ************* ***

8. spacer 4.2|749886|33|NZ_CP040439|PILER-CR matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 10, identity: 0.697

ctggtaggtgccgagcttgctcggcacgctctc	CRISPR spacer
gcactgggtgccgagcttgctcgccgcgctgga	Protospacer
 .. *.***************** *.****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

586147 : 592387

Enterobacteria_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154262223.1\|586147_587203_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.7e-80	46.5
WP_154262224.1\|587217_588105_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	1.3e-97	60.0
WP_154351990.1\|588101_588659_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.5e-45	50.3
WP_154351991.1\|588655_589549_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.7e-29	39.0
WP_049398411.1\|589624_591028_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	3.8e-48	29.1
WP_154262229.1\|591040_592387_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	1.6e-30	26.8

DBSCAN-SWA_2

937816 : 985752

Rhizobium_phage(25.0%)

tail,head,capsid,protease,integrase,terminase

attL 929974:929999|attR 995735:995760

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
929974:929999	attL	NA	NA	NA	NA
WP_049417433.1\|937816_939061_-\|integrase	site-specific integrase	A0A0F7L7C7	uncultured_marine_virus	4.8e-10	27.9
WP_005412378.1\|939127_939502_-	hypothetical protein	NA	NA	NA	NA
WP_005412379.1\|940241_940382_-	hypothetical protein	NA	NA	NA	NA
WP_032961789.1\|940623_941244_-	antirestriction protein	U5P3Z5	Mycobacterium_phage	5.7e-20	34.5
WP_032961791.1\|941307_941568_-	hypothetical protein	NA	NA	NA	NA
WP_032961794.1\|941564_941747_-	hypothetical protein	NA	NA	NA	NA
WP_005412383.1\|941743_942184_-	hypothetical protein	NA	NA	NA	NA
WP_005412384.1\|942183_942507_-	hypothetical protein	NA	NA	NA	NA
WP_005412385.1\|942559_943159_-	hypothetical protein	Q8HAP4	Burkholderia_phage	6.5e-13	41.1
WP_154267699.1\|943462_943624_-	hypothetical protein	NA	NA	NA	NA
WP_032961796.1\|944699_945029_+	hypothetical protein	NA	NA	NA	NA
WP_032961798.1\|945244_945577_+	hypothetical protein	NA	NA	NA	NA
WP_005409127.1\|945680_946067_+	response regulator	NA	NA	NA	NA
WP_005412387.1\|946088_946541_-	hypothetical protein	Q7Y5G6	Xanthomonas_virus	1.5e-09	32.9
WP_005412388.1\|946537_946846_-	hypothetical protein	NA	NA	NA	NA
WP_065426719.1\|946855_947353_-	hypothetical protein	A0A2H4JFP9	uncultured_Caudovirales_phage	5.2e-40	59.2
WP_005412390.1\|947349_947541_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_005412391.1\|947549_949223_-\|terminase	phage terminase large subunit	A0A2R2ZGE7	Ralstonia_phage	3.6e-178	56.5
WP_032961803.1\|949222_949468_-	hypothetical protein	NA	NA	NA	NA
WP_005412393.1\|949464_949734_-	hypothetical protein	NA	NA	NA	NA
WP_126411773.1\|949760_950246_-	hypothetical protein	NA	NA	NA	NA
WP_005412395.1\|950245_953050_-\|tail	phage tail fiber protein	A0A142EZL1	Stenotrophomonas_phage	7.2e-38	40.1
WP_005412396.1\|953075_955613_-	DUF1983 domain-containing protein	NA	NA	NA	NA
WP_099470283.1\|955652_958745_-	hypothetical protein	L7TQZ1	Rhizobium_phage	3.2e-47	23.3
WP_032961810.1\|958823_960998_-	hypothetical protein	NA	NA	NA	NA
WP_032961812.1\|961001_961400_-	hypothetical protein	NA	NA	NA	NA
WP_005412400.1\|961432_961906_-	hypothetical protein	NA	NA	NA	NA
WP_005412401.1\|961902_964035_-	hypothetical protein	L7TLW2	Rhizobium_phage	3.6e-66	31.5
WP_005412402.1\|964034_964625_-	hypothetical protein	A0A2R2ZGD2	Ralstonia_phage	1.7e-26	41.9
WP_005412403.1\|964724_965678_-\|capsid	phage capsid protein	L7TJ83	Rhizobium_phage	2.4e-62	42.7
WP_005412404.1\|965704_966490_-\|capsid	capsid assembly protein, putative	A0A1B1IVZ8	uncultured_Mediterranean_phage	1.1e-20	30.6
WP_004154577.1\|966489_966633_-	hypothetical protein	NA	NA	NA	NA
WP_005412405.1\|966649_968206_-\|head,tail	phage collar / T7-like phage head-to-tail joining protein	L7TJ79	Rhizobium_phage	1.1e-85	37.6
WP_005412406.1\|968198_968351_-	hypothetical protein	NA	NA	NA	NA
WP_005412407.1\|968371_968551_-	hypothetical protein	NA	NA	NA	NA
WP_004154581.1\|968615_969152_-	adenylate kinase	A0A2H4J8A1	uncultured_Caudovirales_phage	1.4e-30	46.1
WP_032961816.1\|969220_969529_+	hypothetical protein	NA	NA	NA	NA
WP_005412408.1\|969554_969761_-	hypothetical protein	NA	NA	NA	NA
WP_004154583.1\|969748_970582_-	hypothetical protein	M1HMA9	Pelagibacter_phage	2.0e-36	36.0
WP_005412410.1\|970578_970728_-	hypothetical protein	NA	NA	NA	NA
WP_005412411.1\|970724_971036_-	hypothetical protein	NA	NA	NA	NA
WP_005412412.1\|971032_971281_-	hypothetical protein	NA	NA	NA	NA
WP_005412414.1\|971431_971797_-	hypothetical protein	NA	NA	NA	NA
WP_050483582.1\|971793_972132_-	hypothetical protein	A0A2H4P845	Pseudomonas_phage	9.6e-22	53.2
WP_049417451.1\|972113_973988_-	DNA polymerase	A0A076YNV1	Mesorhizobium_phage	5.0e-160	48.0
WP_005412416.1\|974000_974651_-	hypothetical protein	NA	NA	NA	NA
WP_005412417.1\|974661_974910_-	hypothetical protein	NA	NA	NA	NA
WP_004154589.1\|975075_976707_-	toprim domain-containing protein	L7TLT7	Rhizobium_phage	3.7e-151	56.6
WP_004154591.1\|976693_976873_-	hypothetical protein	NA	NA	NA	NA
WP_080101784.1\|976869_977271_-	hypothetical protein	NA	NA	NA	NA
WP_004154593.1\|977267_977630_-	putative N-acetylmuramoyl-L-alanine amidase	I6Q9Z5	Yersinia_phage	2.5e-15	40.6
WP_080101785.1\|977630_978110_-	RusA family crossover junction endodeoxyribonuclease	A0A2I7QZP6	Vibrio_phage	1.4e-05	31.1
WP_004154595.1\|978051_978717_-	hypothetical protein	A0A076YJ33	Mesorhizobium_phage	1.5e-26	40.9
WP_154267700.1\|978716_978875_-	hypothetical protein	NA	NA	NA	NA
WP_005412421.1\|978874_979159_-	hypothetical protein	NA	NA	NA	NA
WP_005412422.1\|979151_979295_-	hypothetical protein	NA	NA	NA	NA
WP_005412423.1\|979339_981775_-	DNA-directed RNA polymerase	L7TQW5	Rhizobium_phage	1.5e-164	40.7
WP_154262494.1\|982337_983633_+	trigger factor	NA	NA	NA	NA
WP_004146318.1\|983709_984336_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	7.7e-57	57.4
WP_032129320.1\|984462_985752_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.2e-135	58.0
995735:995760	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1742126 : 1785339

Pseudomonas_phage(30.77%)

tail,head,capsid,protease,portal,tRNA,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154263078.1\|1742126_1743158_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_154263079.1\|1743227_1743767_-	SMR domain protein	NA	NA	NA	NA
WP_010485979.1\|1743976_1744756_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.9e-77	56.8
WP_010485977.1\|1744752_1745430_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.0e-38	50.3
WP_154263080.1\|1745448_1746063_+	DedA family protein	NA	NA	NA	NA
WP_032130122.1\|1746059_1746845_+	peptidoglycan DD-metalloendopeptidase family protein	I2E8W3	Clostridium_phage	1.4e-07	36.1
WP_049421499.1\|1747020_1747509_+	hypothetical protein	NA	NA	NA	NA
WP_012510659.1\|1747536_1747911_-	Xcc1710-like domain-containing protein	NA	NA	NA	NA
WP_154263081.1\|1747924_1748230_-	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA
WP_005409014.1\|1748295_1748928_+	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA
WP_154263083.1\|1748991_1750932_+\|protease	ATP-dependent zinc metalloprotease FtsH	M4QMW8	Micromonas_pusilla_virus	4.1e-117	42.6
WP_021202558.1\|1751034_1751220_+	hypothetical protein	NA	NA	NA	NA
WP_154263084.1\|1751843_1752740_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	3.6e-23	31.2
WP_154263085.1\|1752739_1753693_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_004152891.1\|1753789_1754065_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_032128411.1\|1754079_1755390_+	GTPase HflX	NA	NA	NA	NA
WP_154263088.1\|1755511_1756006_+	nicotinamide-nucleotide amidohydrolase family protein	B5TK85	Pseudomonas_phage	5.0e-27	49.0
WP_154353603.1\|1756040_1757723_+	2-polyprenylphenol 6-hydroxylase	E5EQ95	Micromonas_sp._RCC1109_virus	4.9e-42	29.4
WP_005412936.1\|1757935_1758571_+	transcriptional repressor LexA	A0A1W6JNS2	Morganella_phage	4.3e-15	41.8
WP_049449560.1\|1758775_1759813_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	3.0e-114	61.6
WP_014036760.1\|1759923_1760415_+	recombination regulator RecX	NA	NA	NA	NA
WP_004152909.1\|1763318_1763522_+	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	2.2e-13	74.5
WP_021202704.1\|1763770_1763974_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_154352224.1\|1763960_1764275_-	hypothetical protein	NA	NA	NA	NA
WP_154352225.1\|1764326_1764809_+	hypothetical protein	NA	NA	NA	NA
WP_154352226.1\|1764814_1765546_-	hypothetical protein	NA	NA	NA	NA
WP_154352227.1\|1765538_1765766_-	hypothetical protein	NA	NA	NA	NA
WP_010480583.1\|1766339_1766549_-	hypothetical protein	NA	NA	NA	NA
WP_154352228.1\|1766636_1766879_-	hypothetical protein	NA	NA	NA	NA
WP_010480585.1\|1766878_1767208_-	hypothetical protein	NA	NA	NA	NA
WP_154352229.1\|1767204_1767492_-	hypothetical protein	NA	NA	NA	NA
WP_154353604.1\|1767488_1767734_-	hypothetical protein	NA	NA	NA	NA
WP_154352230.1\|1767784_1768000_-	hypothetical protein	NA	NA	NA	NA
WP_065186855.1\|1767996_1768188_-	hypothetical protein	NA	NA	NA	NA
WP_154352231.1\|1768458_1769406_+	hypothetical protein	A0A0B5CYL8	Listeria_phage	2.7e-21	26.1
WP_154352232.1\|1769463_1770138_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	9.9e-10	33.0
WP_154352233.1\|1770211_1770670_+	hypothetical protein	NA	NA	NA	NA
WP_154352234.1\|1770779_1771310_+	hypothetical protein	B7SYH6	Stenotrophomonas_phage	1.9e-40	48.5
WP_154352235.1\|1771306_1771618_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_154352236.1\|1771619_1772513_+	helix-turn-helix domain-containing protein	A0A0U4IBP5	Pseudomonas_phage	5.5e-32	56.5
WP_154352237.1\|1772502_1773174_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	3.7e-25	38.8
WP_058982029.1\|1773170_1773365_+	hypothetical protein	NA	NA	NA	NA
WP_058982027.1\|1773364_1773742_+	hypothetical protein	NA	NA	NA	NA
WP_154352238.1\|1773738_1774251_+	hypothetical protein	NA	NA	NA	NA
WP_154352239.1\|1774247_1774601_+	hypothetical protein	NA	NA	NA	NA
WP_154352240.1\|1774600_1774810_+	hypothetical protein	NA	NA	NA	NA
WP_154353605.1\|1774874_1775591_+	hypothetical protein	C8CLH7	Xylella_phage	3.6e-50	48.7
WP_154352241.1\|1775687_1776173_+	glycoside hydrolase family protein	Q8SBE0	Shigella_phage	1.7e-51	66.7
WP_032129818.1\|1776169_1776484_+	hypothetical protein	NA	NA	NA	NA
WP_154352242.1\|1776480_1776957_+	hypothetical protein	NA	NA	NA	NA
WP_154352243.1\|1776953_1777298_+	DUF1064 domain-containing protein	A0A2H4J7A6	uncultured_Caudovirales_phage	2.1e-40	68.4
WP_154352244.1\|1777460_1777751_+	hypothetical protein	NA	NA	NA	NA
WP_154352245.1\|1777750_1778149_+	HNH endonuclease	A0A2H4PHY5	Pseudomonas_phage	5.3e-11	47.3
WP_154352246.1\|1778227_1778608_+	hypothetical protein	Q9XJT7	Pseudomonas_phage	2.6e-31	54.0
WP_154352247.1\|1778611_1780282_+\|terminase	terminase large subunit	A0A0U4B0C7	Pseudomonas_phage	3.0e-225	69.4
WP_154352248.1\|1780281_1781586_+\|portal	phage portal protein	C7BGG8	Burkholderia_phage	1.5e-59	37.0
WP_154352249.1\|1781572_1782313_+\|protease	Clp protease ClpP	C7BGG9	Burkholderia_phage	7.7e-48	50.0
WP_154352250.1\|1782381_1783626_+\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	6.3e-95	47.3
WP_154352251.1\|1783683_1784088_+	hypothetical protein	NA	NA	NA	NA
WP_154352252.1\|1784091_1784514_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_154352253.1\|1784510_1784843_+\|head	phage head closure protein	B5WZS5	Pseudomonas_phage	8.0e-13	36.4
WP_154352254.1\|1784835_1785339_+	hypothetical protein	A4JX05	Burkholderia_virus	4.8e-09	33.8

DBSCAN-SWA_4

2559411 : 2569099

Stenotrophomonas_phage(90.0%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154352556.1\|2559411_2559816_-	hypothetical protein	S0F2J2	Stenotrophomonas_phage	1.6e-52	95.7
WP_154352557.1\|2559957_2560185_+	hypothetical protein	S0F3S0	Stenotrophomonas_phage	1.5e-10	71.4
WP_154352558.1\|2560181_2560358_+	hypothetical protein	NA	NA	NA	NA
WP_154353621.1\|2560365_2560959_+	DNA cytosine methyltransferase	Q6UJ20	Burkholderia_virus	6.3e-69	69.6
WP_154352559.1\|2560951_2562052_+	replication protein	S0F3I3	Stenotrophomonas_phage	3.6e-203	94.7
WP_014647144.1\|2562058_2562361_+	single-stranded DNA-binding protein	B1NI78	Stenotrophomonas_phage	4.7e-44	92.7
WP_154352560.1\|2562364_2562622_+	hypothetical protein	S0F2C2	Stenotrophomonas_phage	4.5e-40	97.6
WP_154353622.1\|2562669_2562804_+\|capsid	capsid protein	NA	NA	NA	NA
WP_154352561.1\|2564390_2564789_+	hypothetical protein	S0F3B3	Stenotrophomonas_phage	5.7e-58	88.6
WP_154352562.1\|2564793_2566089_+	Zona occludens toxin	S0F2C3	Stenotrophomonas_phage	3.1e-230	91.2
WP_154352563.1\|2566102_2566561_-	hypothetical protein	NA	NA	NA	NA
WP_154352564.1\|2566629_2566953_-	hypothetical protein	S0F2C0	Stenotrophomonas_phage	8.2e-47	88.8
WP_154352565.1\|2567155_2567425_+	hypothetical protein	NA	NA	NA	NA
WP_154352566.1\|2567450_2568059_-	hypothetical protein	NA	NA	NA	NA
WP_154352567.1\|2568162_2568639_+	hypothetical protein	NA	NA	NA	NA
WP_147427791.1\|2568652_2569099_-	hypothetical protein	Q4LAU4	Stenotrophomonas_phage	3.7e-45	59.9

DBSCAN-SWA_5

4367854 : 4401054

Siphoviridae_environmental_samples(16.67%)

tail,head,capsid,portal,integrase,terminase

attL 4365471:4365486|attR 4401501:4401516

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4365471:4365486	attL	NA	NA	NA	NA
WP_154353379.1\|4367854_4369111_+\|integrase	integrase	NA	NA	NA	NA
WP_154353380.1\|4369396_4369753_-	hypothetical protein	NA	NA	NA	NA
WP_154353381.1\|4371008_4371746_-	hypothetical protein	NA	NA	NA	NA
WP_154353382.1\|4371745_4372135_-	hypothetical protein	NA	NA	NA	NA
WP_154353383.1\|4372134_4375656_-	DUF1983 domain-containing protein	A0A2R3UA88	Siphoviridae_environmental_samples	0.0e+00	58.9
WP_125892293.1\|4375652_4376237_-\|tail	tail assembly protein	W0LI27	Edwardsiella_phage	2.5e-46	51.0
WP_154353384.1\|4376229_4376970_-	peptidase P60	A0A2R3UAR4	Siphoviridae_environmental_samples	1.5e-83	60.2
WP_154353656.1\|4377215_4378097_-\|tail	phage minor tail protein L	A0A2R3UA90	Siphoviridae_environmental_samples	1.3e-46	63.2
WP_125892287.1\|4378453_4378837_-	hypothetical protein	NA	NA	NA	NA
WP_154353385.1\|4378839_4379400_-	hypothetical protein	NA	NA	NA	NA
WP_125892283.1\|4379409_4379757_-\|tail	phage tail protein	I6PBN7	Cronobacter_phage	1.0e-10	37.1
WP_154353386.1\|4379831_4382558_-\|tail	phage tail tape measure protein	A0A1V1FCQ8	Vibrio_phage	4.1e-70	28.6
WP_125892279.1\|4382550_4382748_-	hypothetical protein	NA	NA	NA	NA
WP_154353657.1\|4382774_4383194_-	hypothetical protein	NA	NA	NA	NA
WP_154353387.1\|4383196_4383949_-	hypothetical protein	NA	NA	NA	NA
WP_125892374.1\|4383985_4384396_-	hypothetical protein	NA	NA	NA	NA
WP_125892275.1\|4384421_4384733_-	hypothetical protein	NA	NA	NA	NA
WP_154353388.1\|4384747_4385509_-	hypothetical protein	NA	NA	NA	NA
WP_154353389.1\|4385554_4386556_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	8.2e-53	38.2
WP_154353390.1\|4386643_4387330_-\|head	head decoration protein	NA	NA	NA	NA
WP_154353658.1\|4387332_4388637_-	S49 family peptidase	Q75QM8	Wolbachia_phage	2.0e-38	38.9
WP_154353391.1\|4388683_4390165_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	9.8e-103	45.7
WP_154353392.1\|4390157_4390373_-	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	1.8e-05	42.0
WP_154353659.1\|4390374_4392435_-\|terminase	terminase	A5LH27	Enterobacteria_phage	1.4e-147	42.0
WP_154353393.1\|4392436_4392940_-	DUF1441 family protein	A0A219Y9N2	Aeromonas_phage	9.0e-24	38.7
WP_154353660.1\|4393547_4393829_-	hypothetical protein	NA	NA	NA	NA
WP_154353394.1\|4393921_4394356_-	hypothetical protein	NA	NA	NA	NA
WP_154353395.1\|4394342_4394567_-	hypothetical protein	NA	NA	NA	NA
WP_046984124.1\|4394563_4394881_-	hypothetical protein	NA	NA	NA	NA
WP_154353396.1\|4394877_4395396_-	glycoside hydrolase family protein	S4TUB1	Salmonella_phage	4.1e-48	61.5
WP_154353397.1\|4396057_4396801_-	hypothetical protein	NA	NA	NA	NA
WP_154353398.1\|4396970_4398719_-	ATP-dependent helicase	A0A0U1UNQ7	Pseudomonas_phage	1.3e-266	77.1
WP_154353661.1\|4398718_4399093_-	hypothetical protein	A0A0U1UNQ6	Pseudomonas_phage	3.8e-35	58.5
WP_154353399.1\|4399149_4399545_-	hypothetical protein	NA	NA	NA	NA
WP_154353400.1\|4399544_4399973_-	HD domain-containing protein	A0A0M3LQS1	Mannheimia_phage	1.5e-11	37.5
WP_154353401.1\|4399972_4400764_-	DNA-binding protein	A0A1W6JP13	Morganella_phage	2.0e-22	48.9
WP_154353662.1\|4400760_4401054_-	hypothetical protein	H2DE79	Erwinia_phage	1.2e-28	61.6
4401501:4401516	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040439

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection