CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040440	Stenotrophomonas maltophilia strain ICU331 chromosome, complete genome	10 crisprs	csa3,WYL,DEDDh,PD-DExK,cas3,Cas9_archaeal,DinG,RT	0	1	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040440_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040440_1

130685-130790

Orphan

Consensus_repeat	Method
GTGGGTGCCGACCGTTGGTCGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040440_1

>merge|NZ_CP040440|1|130685-130790|CRISPRCasFinder
GTGGGTGCCGACCGTTGGTCGGCACTTCCACTGTCCTCGTTCTGGTAGGTACCAAGCTTGCTTGGCACGGGGTCTGCTCTGGTGGGTGCCGACCGTTGGTGGCACA

>NZ_CP040440|1|1|130685-130790|CRISPRCasFinder
GTGGGTGCCGACCGTTGGTCGGCAC	TTCCACTGTCCTCGTTCTGGTAGGTACCAAGCTTGCTTGGCACGGGGTCTGCTCTG
GTGGGTGCCGACCGTTGGTGGCACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040440.1\|WP_012478729.1\|131692_132859_+\|transglycosylase	unknown	unknown	gnl\|CDD\|225377
NZ_CP040440.1\|WP_012478732.1\|135605_136667_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226370
NZ_CP040440.1\|WP_012478725.1\|125188_126016_-\|META-domain-containing-protein	unknown	unknown	gnl\|CDD\|379548
NZ_CP040440.1\|WP_012478737.1\|140695_141583_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_012478728.1\|130878_131625_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NZ_CP040440.1\|WP_099470504.1\|139529_140597_-\|TonB-family-protein	unknown	unknown	gnl\|CDD\|367555
NZ_CP040440.1\|WP_012478722.1\|121793_123863_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP040440.1\|WP_012478723.1\|123873_124485_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|176643
NZ_CP040440.1\|WP_012478730.1\|132967_133282_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_043034922.1\|129224_130655_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|182630
NZ_CP040440.1\|WP_005407550.1\|127107_128517_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_CP040440.1\|WP_012478734.1\|138201_138771_+\|superoxide-dismutase-family-protein	unknown	unknown	gnl\|CDD\|376292
NZ_CP040440.1\|WP_005411850.1\|120702_121737_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223506
NZ_CP040440.1\|WP_043034985.1\|124569_125046_-\|META-domain-containing-protein	unknown	unknown	gnl\|CDD\|225728
NZ_CP040440.1\|WP_012478731.1\|133389_135435_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP040440.1\|WP_024956258.1\|119903_120695_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP040440.1\|WP_012478733.1\|136659_138108_+\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
NZ_CP040440.1\|WP_012478735.1\|138802_139429_+\|superoxide-dismutase-family-protein	unknown	unknown	gnl\|CDD\|376292
NZ_CP040440.1\|WP_012478726.1\|126089_126884_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP040440.1\|WP_004134334.1\|128864_129203_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424

Protein	Function_ID	Function_description	E-value
NZ_CP040440.1\|WP_012478729.1\|131692_132859_+\|transglycosylase	gnl\|CDD\|225377	COG2821, MltA, Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane].	6.26844e-116
NZ_CP040440.1\|WP_012478732.1\|135605_136667_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	2.26232e-109
NZ_CP040440.1\|WP_012478725.1\|125188_126016_-\|META-domain-containing-protein	gnl\|CDD\|379548	pfam14302, DUF4377, Domain of unknown function (DUF4377). This domain family is found in bacteria and archaea, and is approximately 80 amino acids in length.	1.42729e-26
NZ_CP040440.1\|WP_012478728.1\|130878_131625_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	9.36923e-53
NZ_CP040440.1\|WP_099470504.1\|139529_140597_-\|TonB-family-protein	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	4.72285e-08
NZ_CP040440.1\|WP_012478722.1\|121793_123863_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	4.40419e-24
NZ_CP040440.1\|WP_012478723.1\|123873_124485_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	2.03917e-51
NZ_CP040440.1\|WP_043034922.1\|129224_130655_+\|ammonium-transporter	gnl\|CDD\|182630	PRK10666, PRK10666, ammonium transporter AmtB.	2.06677e-175
NZ_CP040440.1\|WP_005407550.1\|127107_128517_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_CP040440.1\|WP_012478734.1\|138201_138771_+\|superoxide-dismutase-family-protein	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	1.54818e-41
NZ_CP040440.1\|WP_005411850.1\|120702_121737_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223506	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	1.69813e-27
NZ_CP040440.1\|WP_043034985.1\|124569_125046_-\|META-domain-containing-protein	gnl\|CDD\|225728	COG3187, HslJ, Heat shock protein [Posttranslational modification, protein turnover, chaperones].	0.00071398
NZ_CP040440.1\|WP_012478731.1\|133389_135435_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	6.31002e-55
NZ_CP040440.1\|WP_024956258.1\|119903_120695_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.4833e-38
NZ_CP040440.1\|WP_012478733.1\|136659_138108_+\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
NZ_CP040440.1\|WP_012478735.1\|138802_139429_+\|superoxide-dismutase-family-protein	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	4.25941e-52
NZ_CP040440.1\|WP_012478726.1\|126089_126884_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	7.3206e-85
NZ_CP040440.1\|WP_004134334.1\|128864_129203_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	3.60313e-56

>NZ_CP040440.1|WP_043034922.1|129224_130655_+|ammonium-transporter
MKMRLLTGWQARFHVVWLLMLLSALAAGAWPGNAHAQAQVSPLPSESVAVEPLQDTAAAAAAPAVAEAAAAYDHGDVAWMLTSTLLVLLMVVPGLALFYGGLVRSKNVLSVLSQILVVFSLVLLLWVAYGYSAVFSAGNPFFGSFTEFAFLKGFTPESVGNTPIKGLPDYLFVAFQSTFAGITTALIVGAFAERIKFRAVLLFSALWFTLSYIPMAHIVWGGGYLGELGAIDFAGGTVVHINAGVAGLVAAWFVGKRLGYGQTALKPHNVPFTYIGAMLLWVGWFGFNAGSAAAADTVASLAFLNTVLATAAAVLGWTLVEAISKGKPSALGAASGAVAGLVGITPACGTVGPLGAIIIGFVAGVVCVWGVTGLKRLLKVDDTADVFGVHGVGGIVGAILTGVFSAQSLGGTKAGLDIAHQVWVQVVSVGLTVVWSAVVTAVILLVVKVVVGLRVTEEAERTGLDVTSHGESAYEA
>NZ_CP040440.1|WP_004134334.1|128864_129203_+|P-II-family-nitrogen-regulator
MKLISAIIRPFKLDEVREALSDAGVSGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKIETVVTDERADAVIEAIQSSAGTGKIGDGKIFVTAVEQVIRIRTGEIGADAL
>NZ_CP040440.1|WP_005407550.1|127107_128517_+|type-I-glutamate--ammonia-ligase
MSVENVEKLIKDNQIEFVDLRFVDMRGVEQHVTFPVSIVEPSLFEEGKMFDGSSIAGWKGINESDMVLLPDTASAYVDPFYADPTIVISCDILDPATMQPYGRCPRGIAKRAEAYLKSSGIAETAFFGPEPEFFIFDSVRFANEMGNTFFKVDSEEAAWNSGAKYDGANSGYRPGVKGGYFPVPPTDTLHDLRAEMCKTLEQVGIEVEVQHHEVATAGQCEIGTKFSTLVQKADELLRMKYVIKNVAHRNGKTVTFMPKPIVGDNGSGMHVHQSLSKGGTNLFSGDGYGGLSQLALWYIGGIFKHAKAINAFANSGTNSYKRLVPGFEAPVMLAYSARNRSASCRIPWVSNPKARRIEMRFPDPIQSGYLTFTALMMAGLDGIKNQIDPGAPSDKDLYDLPPEEEKLIPQVCSSLDQALEALDKDREFLKAGGVMSDDFIDGYIALKMQEVTKFRAATHPLEYQLYYAS
>NZ_CP040440.1|WP_012478726.1|126089_126884_-|undecaprenyl-diphosphate-phosphatase
MSDLLSALLLGILEGLTEFLPISSTGHLLIAQHWLGARSDFFNIVIQAGAIVAVVLVFRQRLLQLATGFNQRGNREYVFKLGAAFLVTAVVGLVVRKAGWSLPETVSPVAWALIIGGVWMLLVEAYTARLPDRDQVTWTVAIGVGLAQVVAGVFPGTSRSASAIFLAMLLGLSRRAAAAEFVFLVGIPTMFAASAYTFLEMAKAGQLGSEDWADVGVAFLAAAITGFVVVKWLMGYIKSHRFTAFAIYRIALGAALLLWLPSGS
>NZ_CP040440.1|WP_012478725.1|125188_126016_-|META-domain-containing-protein
MNRKLTLLLPLALMAACSQTPAPAGTGGDDVAPAAAKAADQQTLAHLDAQRLQSQHWLLQQATGADGKRIDALFAREDKPVTLDFADGRLSVSNTCNRMGGGYTLADGKLTVSAMASTMMACTDKALMALDEAVSSRLQGELKAEQDADGKLTLTTAKGDVLVFNPEPTAETRYGGAGETVFLEVAAKTEKCSHPLIPDYQCLQVREVKFDDKGLKQGEPGKFENFYGNIEGYTHEDGVRNVVRVKRYEVKNPPADAPSQAYVLDMVVESAIEKK
>NZ_CP040440.1|WP_043034985.1|124569_125046_-|META-domain-containing-protein
MKHVPVLIIAALLAMSANVAAASTPSTPSTDQLEAHLWQLVRATNAQGKRIDALFVRGRAPYTLRFQSGFMSELNLCNHVSNEYRLQGNLLILRNSVQTTALCVDQRLPTQQKLAGKLMHGEGSAPTLALDDRGALVLRNARGDTAVFEPAALQADGR
>NZ_CP040440.1|WP_012478723.1|123873_124485_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MQLTSHSLTNGAPIDREFAAGDANGFAPDRNPHLAWSGAPAGTRSFLLVCVDPDVPTVPETVGRGDMSVPRDQPRCDFVHWVMADIPATVQEIAAGSCSDGFVVKGKPAPAGPAGSRQGLNDFTGWFAGNPDMAGDYLGYDGPYPPFNDERMHRYFFRVFALDVASLDLPQRFTAADAYRAMHGHVLAEAALHGTYTLNPALG
>NZ_CP040440.1|WP_012478722.1|121793_123863_+|tetratricopeptide-repeat-protein
MQDQIIQALRQNQADQAVQLAQAWTRDEPGQANAHRWLALALQQQGNAEEAMEALQQALRLAPDDAQLHLQHAGLLLALRQFEGADEALVRTTGLDPNSFSAYLMQAHLAIGRNDFDEAQRISTLAARVEPDHPELLTIDGMVALRRGDADRALALLSAASKALPDDTRVLYALGFAYLGKDMLAFAEQSFRRVLELNPSLSSLHGLVVQLALRQGNVPAAAEAMQVALQQPEMDVPSMRRLAGELSLRNGQPLQALDYLLPLLETQPEDRQVLQLLLMSWQRLGREDEARARLDAVLDTDDQLHDVWLARLAIEQVGSESAVTAVERWMAAMPAHLPALEARLRLHDMAGEHAQAEAIAERIVSLEPGRVSGETRLVEGLLQRDPAAAVARVQALIELAPEEHRADLRTWMGEIQDRAGQPQDALRTWLSLQADQAPQRLPLPPQAKSPPSWPDKGSIDGDASSAPIFLWGPPGSGVERVATGLAAASPVLRSDRYTNTPPDDAFQNYNTLQDLASGVLTPERLVQRWREQLPARGLQSDTVIDWLLWWDNALLWALRPQLPQGRLVLVLRDPRDMLLDWVAYGAAAPLAMTSLAEASEWLTRALTQIATLHEDDLYPHVLLRIDQIGNDPQAMAELLGRLFERPMPPAAQLGAPRLPAGHWRNYRDVMSAAFAQLTPVAVRLGYPEE
>NZ_CP040440.1|WP_005411850.1|120702_121737_+|alpha/beta-fold-hydrolase
MALIPPPVLDAGTPTLHAADYQPPRWLRNPHLQSMLSSSRMRLQRGLLLLAATGAVSEELILDGGDGVRLQGWHSHVEGREPKGIALLLHGWEGSAESSYMRMAAARMIEQGFDVVRLNFRDHGNTHHLNPGIFHSNLIDEVVHAAGDIAQRWPQLPLVAAGYSLGGNFVLRLALRAPAAGVPLLRVASVCPVLDPALTMESIENGPAMYDWYFRRKWAGSLRRKRDLFPELSDCDDRVLKLDIRALTAWLVERHTSFGSLQAYFDGYSIAGDRLSSLQVPADILMAQDDPVIPYATFSNWQLPGQARLETACWGGHCGFIENWRGDGFSERWVAQRLQRVLQA
>NZ_CP040440.1|WP_024956258.1|119903_120695_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MTSPTPAPRGGVARVCRYLYRVPLLLVHIIVFLPLILIGMLPPWGELRVGEATFGAKVVNWWQGGLMWIFGFRLVQVGAPLPGAVLFVANHVSWVDICILHSQRMMGFVAKREIASWPLVGWLAARGQTIFHQRGNTESLGGVMQVMADRLREGKAVGVFPEGRTRGGHEVGPFHARIFQAAVETGVPVQPVALVYGAKGDAQTIVAFGPNESFFANFLRLLGEPARRAEVHFLAPIGAQDLEGRRRIAETSRARIVAAMSAG
>NZ_CP040440.1|WP_012478728.1|130878_131625_+|N-acetylmuramoyl-L-alanine-amidase
MHPIRTVLMLSACLLLAACASAPQETRNPLATWVPSPNQNARTPVIIVIHHTEQKSVQQSLHTLRTANSGGPVSAHYLVGADGHRYQLVADERRAWHAGAGRWGTITDLNSASIGIELDNDGRSPFSAAQIESLIVLLRDLTSRLNIPPRQVIGHADLAPTRKQDPSRFFPWQQLAEVGFGVWPRAADGAAPEGFDAWNALARFGYPLDNREATVAAFHRRFRGRDDLPKTLDAEDARILYSLLLQTP
>NZ_CP040440.1|WP_012478729.1|131692_132859_+|transglycosylase
MIDSATFVKRRHCILLAAAVLAGCATTAPRTGSEAPTPTMPPAATYAKAAWSALPPVSNSDLQAGFVAWRSSCTRLKNDAVWAKPCATAAAVSDKDPAAIRQFLQRDLDAYALRAGGHQADGLITGYYEPIYAGSLTRTDKATVPVYGTPDDLVVVQLESLYPELKGKRLRGRVEGKVLKPYDDAGTIAAQGANAPVLAWLTDPMDLQLLQIQGSGRVRLADGKQVRLAYAEQNGHPYRAVGRWLVDQGQLKKEDVTMDAIRAWARANPARVPELLRSNPSYVFFVRNPDSPEGPRGSLNVPLTAGYSVAVDRSVVPLGSLLWLSTTRPDGTPVVRPVAAQDTGGAIAGEVRADLYWGSGDAAGKLAGDMKQKGNIWMLWPKGAPLPN
>NZ_CP040440.1|WP_012478730.1|132967_133282_+|hypothetical-protein
MTYAKHNAKRGAKSAAKKYYKHWAESGLGKGNVLMEARGEKIVRQVEIYGTKMVWADEHAHSDDRFLLADQPVSFLDFDEDDEISAREFEAAWKKAREATGYPV
>NZ_CP040440.1|WP_012478731.1|133389_135435_+|TonB-dependent-receptor
MKTPTLVAALAAAPFAPEAFAQSADAALTLGKVQVHQHGEGQLSARQVLTSVDVLGADQIEDRNVSHSWELLGQMPGIQLTETRQGAESGKVSFRAFNGEGYLNAIKTLIDGIPSNVNSGNQRFIDMLFPLDISYIEVVRGTNDPRYGLHNIGGNVNFGTRQGGSYTDARLAYGSYNTRDAQLAVGREANGFAQNYFVGTQASDGYRDHDTSKKYSLGGKWFFGTLDEGLRVGLTARAYHHEADEPGFMTAEELRTLRRGSELRNGNDGDDRDMRQIAAHVDLKLSDALTFGTRLYYNRYEDDRRVTFSDLPTGNLPRQRRVWDERQTGLLSTLTWQASPALTVEGGLNYEQQDNGYIRERYAYAEPTDYSQPPARVQNDDRHSFDNWGAYVQAVYQPVEAWKIVPAYRVDRFSGRTHLMNGITARLQDYGSIGQPKLSIIHSLGQTTHVYANWGRTFQVLTGSTAPAYLTPGQAPMQPSTNTGMELGLKFQPFQGAQARLAVWQQDAENEVSNMPATGTTVTLGKTRRRGVDAQLSLQLGDDWTVWASHAYQEAKITRDDRDAGISLQGREVAATPRHISNLGVDYRATDALRLGLQARAQGDYYLEERNVAGKFGGFAVLDLSAAYQLTPRFSVDLQLKNVTGRQYAYAWYDSFFWDSARPMFSPAPGRSVFVGLNMKL
>NZ_CP040440.1|WP_012478732.1|135605_136667_+|two-component-sensor-histidine-kinase
MSDPAPPPSLDALGTPLAWAGADGCIAGCNPAFARWLGVSVRRLLGRPLVALEVQGEALAHFLARDERDSLRLNRLALAVPGEAPRFAEGWMSRRDDGGWLLEAHPVDEFPGLDPTQALPSALSAALKGLAHELRNPLAGLKGAAQLLARRAAQRDAGERELIELIGSEIERLNGLLDQLLSPAPAAPHAELNIHAALERVLRLAESEAGWAVRLQRDYDPSIPEFHGDADRLTQAVWNLVRNAIQAGAGNITLRTRVEHGVRIAEQLHTLALRLEIADDGRGVPEELAEHLFLPLVSGRAEGTGLGLALAQQVAREHRGTLTYRSRPGHTVFTLLLPIVSGAAPAEEAPRDV
>NZ_CP040440.1|WP_012478733.1|136659_138108_+|nitrogen-regulation-protein-NR(I)
MSESSSSPQRIWVVDDDRAVRFVLCTALREAGYQVVDFDSAAPALQALSEGPPPALLFTDVRMPGDDGLVLLDKLKAALPQLPVVVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVALAQRVLPAVAPALAAATPAAEAHSDQPPQLVGDTPPMRALFRAIGRLAQAPLAVLITGETGTGKELVANALHRESPRAQGPFVALNTAAIPSELLESELFGHEAGAFTGAQRRHIGRFEQADGGTLFLDEIGDMPLPLQTRLLRVLAQGEFFRVGGRELIRVDVRVVAATHQDLEGLVAQGKFRADLLHRLDVVRLQLPPLRERREDIAQLASTFLAAAARKLDTPPKRLTAAALQALREHDWPGNVRELENVCWRMAALAAADTIGVADVDTALNRTRGRRSSTTSADPGQWEALLAEWARRQLAEGVEGLHAQVRERVDHALLEAALQITHGRRAEAAARLGLGRNTLTRKLGAGRRRGGH
>NZ_CP040440.1|WP_012478734.1|138201_138771_+|superoxide-dismutase-family-protein
MRLSFAILPLSAAVLLSACGSAPKKTEPTPPPPTVVSAAKQGEANIAPASASIVSGRIALMVEPGGIHITGLIGGLQPMQQAGFHIHERGDCSAVDASSAGNHFNPGGAAHGRAGTGKHHLGDMDNLRADAQGRANVDIHLKGVTLGGGAATDIAGRALVVHANADDYRSQPAGNAGVRIACGVIRVVR
>NZ_CP040440.1|WP_012478735.1|138802_139429_+|superoxide-dismutase-family-protein
MRLIHTSLFAAIAALGLAACNQQPAAPQAETPPAAPADGATTEPAATPAPAAAPAADATASAELAPTQGNETKGSVTFKVVDGKVHVTGQISGLKPGSEHGFHIHEKGDCSAPDGMSAGGHFNPGKQDHGNVATDPHHGGDMPNIKADDKGVATIDGPVSSNVNIGKGDDFDIIGRGLIVHADADDYKTQPTGNAGARLACAVIQKAQ
>NZ_CP040440.1|WP_099470504.1|139529_140597_-|TonB-family-protein
MLCRLQCAGLTLLAAAVCGLPIMAQAAVPVAATPTCTVAPAFAAAVAEPEVYDSHISFSNTVKVQVNVDAQGRAHDARVLNGSRNRVLDDAARQAALSWKYQCTGPGGIAQPVVPVPEPACRLDRLSWADNEPRFSSAVRSSGLRGSAEVWLRPVAGDPAKTEVKIGRSSGDARIDDTLLNAARNWRLTCPPDAPVKHPWISFTQSFNFEPRRQPAATEASEPEPDDVVIANDALLEFGTVAGFVEALPKMKGVDLAPDQSSQPGMTLYNTSLGAIMREIEMTEGRLKPVTMTHWLVMVPPHRTAPAVVRTFKREVIDAKTGKAHMQTDISILCESGPAECAELRRRRDTLLRSP
>NZ_CP040440.1|WP_012478737.1|140695_141583_-|hypothetical-protein
MSKPDPAMNALGVLALELAGGEVPRQAVLSAEQAGELADRVGRDLSKLVPQVAELDLVFAAAHFDPAEVLRPGWPIHRRLEELQMRAPGRNQGPRLLAFGTDAQGDVPLPFQADASLVGGGLRVVPFLLTGSDVATTNAVAEALEDTLLANGMAHADTALMAQNTFGARIEHARYFTVNDLAAMMSMQYDNQGLAALWPLIETAIMAPGEDEWLNAAPEPLLRYTHGEARMALFDPAGWCAHYDHGKNDCDRLKGIYEQFLMRQRQMAAVLEAHGVPVLFVHCEAGQDARELLAR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP040440_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040440_2

548411-548559

Orphan

Consensus_repeat	Method
GCGGCCGACCTTGGTCGGCGCGGTGAATGCGTGTCGACCAGGGTCGACACCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040440_2

>merge|NZ_CP040440|2|548411-548559|CRISPRCasFinder
GCGGCCGACCTTGGTCGGCGCGGTGAATGCGTGTCGACCAGGGTCGACACCTACCGGGGGGCCTGGCGCGCAGCGGTCGCCATGCGCGGCTCTGGTAGCGGCCGACCTTGGTCGGCGTGGTGAATGCGTGTCGACCAGGGTCGACACCT

>NZ_CP040440|2|2|548411-548559|CRISPRCasFinder
GCGGCCGACCTTGGTCGGCGCGGTGAATGCGTGTCGACCAGGGTCGACACCT	ACCGGGGGGCCTGGCGCGCAGCGGTCGCCATGCGCGGCTCTGGTA
GCGGCCGACCTTGGTCGGCGTGGTGAATGCGTGTCGACCAGGGTCGACACCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040440.1\|WP_005407916.1\|543987_544455_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_CP040440.1\|WP_005407915.1\|543041_543896_-\|flagellar-motor-stator-protein-MotA	unknown	unknown	gnl\|CDD\|181655
NZ_CP040440.1\|WP_005407927.1\|553263_553965_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP040440.1\|WP_012479031.1\|554759_555968_-\|beta-ketoacyl-ACP-synthase-I	unknown	unknown	gnl\|CDD\|181184
NZ_CP040440.1\|WP_005412127.1\|546033_547338_+\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NZ_CP040440.1\|WP_005407930.1\|555967_556483_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	unknown	unknown	gnl\|CDD\|179953
NZ_CP040440.1\|WP_033833709.1\|545117_545294_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_005407925.1\|551782_552046_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_005412122.1\|541194_541470_-\|DUF4031-domain-containing-protein	unknown	unknown	gnl\|CDD\|379076
NZ_CP040440.1\|WP_012479023.1\|541483_541972_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_005407919.1\|545404_545884_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP040440.1\|WP_049395664.1\|552202_553267_+\|methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_CP040440.1\|WP_024957100.1\|551409_551700_+\|DUF3247-family-protein	unknown	unknown	gnl\|CDD\|371627
NZ_CP040440.1\|WP_049395667.1\|544595_544973_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP040440.1\|WP_043033919.1\|553961_554645_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NZ_CP040440.1\|WP_005412128.1\|547316_548384_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP040440.1\|WP_012479024.1\|542099_543038_-\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|236365
NZ_CP040440.1\|WP_049395665.1\|549377_551366_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236842
NZ_CP040440.1\|WP_043033923.1\|548569_549133_-\|DUF3016-domain-containing-protein	unknown	unknown	gnl\|CDD\|378666
NZ_CP040440.1\|WP_049395662.1\|556673_557768_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035

Protein	Function_ID	Function_description	E-value
NZ_CP040440.1\|WP_005407916.1\|543987_544455_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	2.05325e-77
NZ_CP040440.1\|WP_005407915.1\|543041_543896_-\|flagellar-motor-stator-protein-MotA	gnl\|CDD\|181655	PRK09110, PRK09110, flagellar motor stator protein MotA.	2.19995e-164
NZ_CP040440.1\|WP_005407927.1\|553263_553965_+\|pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	4.64966e-75
NZ_CP040440.1\|WP_012479031.1\|554759_555968_-\|beta-ketoacyl-ACP-synthase-I	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
NZ_CP040440.1\|WP_005412127.1\|546033_547338_+\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NZ_CP040440.1\|WP_005407930.1\|555967_556483_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	3.90362e-120
NZ_CP040440.1\|WP_005412122.1\|541194_541470_-\|DUF4031-domain-containing-protein	gnl\|CDD\|379076	pfam13223, DUF4031, Protein of unknown function (DUF4031). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 91 and 130 amino acids in length. There is a conserved HYD sequence motif.	2.42364e-32
NZ_CP040440.1\|WP_049395662.1\|556673_557768_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP040440.1\|WP_005407919.1\|545404_545884_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	2.38136e-70
NZ_CP040440.1\|WP_049395664.1\|552202_553267_+\|methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	1.6327e-66
NZ_CP040440.1\|WP_024957100.1\|551409_551700_+\|DUF3247-family-protein	gnl\|CDD\|371627	pfam11607, DUF3247, Protein of unknown function (DUF3247). This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed at the N-terminal and internal regions.	9.01894e-24
NZ_CP040440.1\|WP_049395667.1\|544595_544973_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	7.13399e-05
NZ_CP040440.1\|WP_043033919.1\|553961_554645_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	8.38787e-59
NZ_CP040440.1\|WP_005412128.1\|547316_548384_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP040440.1\|WP_012479024.1\|542099_543038_-\|flagellar-motor-protein-MotB	gnl\|CDD\|236365	PRK09041, motB, motility protein MotB.	7.57015e-163
NZ_CP040440.1\|WP_049395665.1\|549377_551366_+\|PAS-domain-S-box-protein	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	5.94228e-63
NZ_CP040440.1\|WP_043033923.1\|548569_549133_-\|DUF3016-domain-containing-protein	gnl\|CDD\|378666	pfam11454, DUF3016, Protein of unknown function (DUF3016). This is a bacterial family of uncharacterized proteins.	5.21528e-65

>NZ_CP040440.1|WP_005412128.1|547316_548384_+|alanine-racemase
MRPARALIDLGALRSNYRLARELGGGKALAIIKADAYGHGAVRCAQALEGEADGFGVATIEEALELRQAGIRAPILLLEGIFEPSDMALVAEHDFWFAVGSPWQLEAVAAFDSPRPLTVWLKLDSGMHRLGLDVDSFRAAHARLSALPQVERIVLMTHLARADELDSERTHEQAATFARAIDGLHGETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDDTTLTERLRPVMTMQSKVIAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYPQFAPNGTPVLIDGQPGALIGRVSMDMLTVDLTAHPQAAVGSVVELWGSAPTLAELAPRCGVSAYQLPCAVKRVAKVYV
>NZ_CP040440.1|WP_005412127.1|546033_547338_+|D-amino-acid-dehydrogenase
MRVLVLGSGVIGTTSAWYLRQAGFEVTVIDRQPGPALETSFANAGQLSFGYTSPWAAPGVPKKAIGWLFEKHAPLAIKPGMDLAQYRWLWQMLRNCTHERYAINKARMVRMSEYSRDCLNELRAQIGIEFEGRDLGTTQLFRTQQQLDASAQDIEILAQYGVPYEVLDRAGIIQAEPALAHVDGLVGALRLPRDQTGDCQLFTRRLAQMCVDAGVEFRFDQDITGLEFDGDRITGVRIDGKLETADRFVVALGSYSPALVAPLGMRLPVYPLKGYSLTLPITDPAMAPTSTILDESYKVAVTRFDDRIRVGGMAEVAGFDLSLSQRRRETLELVVSDLYPKGGDLSRAQFWTGLRPATPDGTPVIGATPFRNLYLNTGHGTLGWTMACGSGRYLADLMSARQPQISTEGLDIFRYGQYGHAPQQENRTCVLPAR
>NZ_CP040440.1|WP_005407919.1|545404_545884_-|winged-helix-turn-helix-transcriptional-regulator
MATRTRELDKIDRKILRILQAEGRISFTELGERVGLSTTPCTERVRRLEREGVITGYHAHLDPAAVKASLLVFVEISLAYKSGDIFEEFRRAALKLPNVLECHLVSGDFDYLLKARISEMASYRKLLGSTLLTLPHVRESKSYIVMEEVKETLSLPIPD
>NZ_CP040440.1|WP_033833709.1|545117_545294_+|hypothetical-protein
MSFVHWIAIMKNQQNRHPGKEPQGRNPQQQQQQQMDPQQPHKGGKQQEQRSQKHPQQR
>NZ_CP040440.1|WP_049395667.1|544595_544973_+|hypothetical-protein
MKPILPLLLMALLPLVAQAQVPTSSTPTATRSATTVAPQPVVPPPQAARPQPQVLPSPQPTQPIKSTGPAQVAPAPVPKPADKVYDRNGRIVPGVRPAGPNRVFDSRTGRYYDSVPAGDGQQIKR
>NZ_CP040440.1|WP_005407916.1|543987_544455_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MTAFDLTPPTATQTEALVAGLSSEERRVLLQHGTEAPFCGVFLDNKREGVYCCRLCALPLFRSSTKFDSGTGWPSFFAPFDPAHVREIRDTSHGMVRTEITCARCGSHLGHVFPDGPPPTYERHCLNSVSLSFTGNGEPWPDPLQRGGAEAGMAG
>NZ_CP040440.1|WP_005407915.1|543041_543896_-|flagellar-motor-stator-protein-MotA
MLIIVGFLVVIISVIGGYLGAHGRLGALWQPYELVIIGGAALGAFLVGTPAKTVKQTLQAMVGVFKGPRYKQQDYIDVLSLLYELLNKARREGFMALEDHVERPAESALFGNYPKVQADHHLIDFITDCLRLMIGSNIEPHELEPLLELELEKHHAEAMAPSQVLTKVADGLPGFGIVAAVLGIVITMGSIGGDIVEVGGHVAGALVGTFLGILLGYGFVGPMAAAMEARAEQDSRIYESVKTALLACLRGYNPKIALEFARKTLPSNVRPAFSDFEQHLKTVK
>NZ_CP040440.1|WP_012479024.1|542099_543038_-|flagellar-motor-protein-MotB
MAENKPTVIVRRVKKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMATTNKNDRAAISEYFRNPSPLSGQNATPAPGMAGPGGASTSMIKLGGATDISRGNSNDPFQNQKEAVPQPVDQQQRDKQQLEALMKELQEAISRSQALEPFKDQLLLDLTPEGLRIQIVDKQNRPMFDLGSATLKPYTQQILHELAEYLNHVPNRISLTGHTDITAYSAARGYGNWELSADRANAARRALVDGGLEDSKITRVVGLSSSVLFDKTDPQNPINRRISIVVMTKAAEEAALAGAGPQVGLSAPTADPDVQAAQGEAK
>NZ_CP040440.1|WP_012479023.1|541483_541972_-|hypothetical-protein
MSQNSKAKRDKRKKQQAKRPFLRLNAQQQVQNHAVLTNEDGQVVAAIGLQGREWLLAIGGQTMGNAENPVPMLAMLKHLANVQEKEGRKVNLEYSELLQKLLDTLAAESEQTADEYLDKLVAEFEGVDAAEGEEGEAAEGNVAEEAAAEAAPAADSDSKPQA
>NZ_CP040440.1|WP_005412122.1|541194_541470_-|DUF4031-domain-containing-protein
MTVYVDDAVHPWRGQRWAHLMADTLAELHAMAAQLGIPPRAFQNKASGAHYDVTSELRAQAIALGARAISRHTDRELVKTVIANARAQYRP
>NZ_CP040440.1|WP_043033923.1|548569_549133_-|DUF3016-domain-containing-protein
MKRALVIALLAGALVVSGANAAARNVTGTDAPRALQANGPVSVKWEDPATFTEIRQSTNRFEAERGDWVQQLARYLQTTAAKPLQPGQTLDVTLVDIKRAGDYEPWHGPRARDIRVMRDIYPPRITLQYTLKDADGRIVSEGDARLSDSGYLQGSGLLTNSDPLRYEKRLIDDWVKRQLASQATAAR
>NZ_CP040440.1|WP_049395665.1|549377_551366_+|PAS-domain-S-box-protein
MMVPAPEPDLHHGVLERINAGFCVIQVLFEGDRAVDYRFIEVNDAFERHTGLKDARGQRMSALEPNHEEDWFRIYGEVARSGRPAQFEMEARALGRSFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLRTLLGEAIGAQELVAEGKALDVNLQLPKQPSLVLGDATRLQQVFWNLLSNAIKFTPAEGRIDVQLQADGTHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVAAASEGHGHGATFTVRLPQHLPDAERRPLREVISGPILEPVIVEPYPLRGMHVLAVEDQPEVLEYLRRMLEEQGASVSAASSAGEALALLADTGHLQYHVMLTDIGMPGMDGYGLVRTLREDMGVDAATLPAVAVTALARADDRRRALASGFQEHVAKPYSVAQLVAAVRKVQVPRADSALH
>NZ_CP040440.1|WP_024957100.1|551409_551700_+|DUF3247-family-protein
MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRLPPRV
>NZ_CP040440.1|WP_005407925.1|551782_552046_-|hypothetical-protein
MRALFVGGVVDNSEMDLEGSHPPVHYPEDTGGGHSRYRLHQVGHGADGSVAYAVYGAPDLADDEVARVAEERAYARRFEATPTLFEH
>NZ_CP040440.1|WP_049395664.1|552202_553267_+|methyltransferase
MASSDDAPLQTLFLPFSQGALRWPEGPVAFLRARDGWPLREVAGNREVHCEQSFAPFAQPLQQAAGWTVSGQLDDVAGKGRYPLVLVLPPRQREEARALFARALALVADGGRIVACQSNNEGARSGEGDLKQLTGLGGSLTKNHCRVYWTAPMQGQHDADLAKRWSALDAVRPIVGGRFLSRPGVFAWDRIDPASALLAEHLPADLAGRAADLGAGYGYLSRELLERCPKITALDLYEAEQRALALAELNLAPPPRPLPLRFLWQDVTAGIEPGYDVIISNPPFHTPSRADRPDIGQRFIAVAAQALRPGGRLYVVANRHLPYEYTLNESFGAVRVIAERDGFKLVEAVKGKGK
>NZ_CP040440.1|WP_005407927.1|553263_553965_+|pseudouridine-synthase
MKLVKLIANLGYGSRKQVQWMFREGRVTDADGEVLYADDQVPHEAIRVDGEPLDPPVGLSIALHKPAGYTCSTKDTGRLIYDLLPPRFRDRDPVLSTVGRLDRETSGLLLLTDDGGLLHRIISPKSKLPKVYEVELSDDLRGDEVALFASGTLMLESEKTPLLPAELEVLDARRARLVLHEGRYHQVRRMFAATGNHVQALHRSRVGGLDLQGLDEGQWRQLTSTDLDTLFAP
>NZ_CP040440.1|WP_043033919.1|553961_554645_+|HAD-family-phosphatase
MTTIAALPFLPDAVIFDMDGLMIDSERVSLACWSQAADEFGLGLDEAVFLRMVGLGDRDTHALLRAQGIEDSVIEAVAARCHDLYEARTQTGLPLRPGILELLQLLKAHAVPRAVATTTRQPRANRKLAAAGLLPYFDAVITSGDVARPKPAPDIYLLAAQRLGQAPERCLALEDSPAGTRAALAAGMTVIQVPDLVHPDEELRALGHRIVGSLVDAHALLLPLLPR
>NZ_CP040440.1|WP_012479031.1|554759_555968_-|beta-ketoacyl-ACP-synthase-I
MRRVVITGMGITSCLGNDLDTVSAALREGRSGITALADHAEAGLRSQVGGRVDLDLEALIDRKQKRFMSDAAAFAYLAMRDAIADAGLSAEQVSSLRTGLIAGSGGGSSEWQIGAVDLLRERGVRKVGPYMVPRTMCSTVSACLATAYQIKGVSYSLSAACATSAHCIGAAADMIRHGAQDIMFAGGGEDLHWSMSVMFDAMGALSTSFNETPASASRPYDKDRDGFVIAGGGGMLVLEDYDHAVARGAHIHAELIGYGVTSDGADMVAPSGEGAVRCMKMALQGVDRPLDYLNTHGTSTPLGDVTELNAIREVFGDAVPPLSSTKALSGHSLGAASVHEAIYCLLMMRDGFVAGSANIGELDPKVESFPILRESREQKLDTVMSNSFGFGGTNAALVFGRV
>NZ_CP040440.1|WP_005407930.1|555967_556483_-|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA
MTRLHAFNREQLLASARGELFGTAAGRLPNDPMLMFDRITDIREDGGPHGKGMVRAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLTGFFLTWLGAPGKGRALGCGEVKFTGQVLPEAKLVRYEIDISRVINRKLVMAQSDARMYVDDREIYSARDLRVGLFTETGSF
>NZ_CP040440.1|WP_049395662.1|556673_557768_+|DNA-polymerase-IV
MTRLRKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTEPKSGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRVPGVGKVMEGKLAARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFAEDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLKLKTAQFRILTRSFTPERPPESMEELRDIALALRARVDLPAETRYRLVGVGLGGFREKEPVVQGELFEQGPNDSPRS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP040440_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040440_3

554648-554750

Orphan

Consensus_repeat	Method
GGTAGGTGCCGACCGTTGGTCGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040440_3

>merge|NZ_CP040440|3|554648-554750|CRISPRCasFinder
GGTAGGTGCCGACCGTTGGTCGGCACTCTTTACTGCGTTGGTGGGTGCCAACCTTGGTTGGCACTCTTTACTGCCCTGGTGGGTGCCGACCGTTGGTCGGCAC

>NZ_CP040440|3|3|554648-554750|CRISPRCasFinder
GGTAGGTGCCGACCGTTGGTCGGCAC	TCTTTACTGCGTTGGTGGGTGCCAACCTTGGTTGGCACTCTTTACTGCCCT
GGTGGGTGCCGACCGTTGGTCGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040440.1\|WP_049395654.1\|559867_560797_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP040440.1\|WP_005407927.1\|553263_553965_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP040440.1\|WP_012479034.1\|559120_559759_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|225462
NZ_CP040440.1\|WP_005412127.1\|546033_547338_+\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NZ_CP040440.1\|WP_005407930.1\|555967_556483_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	unknown	unknown	gnl\|CDD\|179953
NZ_CP040440.1\|WP_049395649.1\|562447_564289_-\|TonB-dependent-vitamin-B12-receptor	unknown	unknown	gnl\|CDD\|273802
NZ_CP040440.1\|WP_049395651.1\|561649_562306_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NZ_CP040440.1\|WP_005407925.1\|551782_552046_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_049395662.1\|556673_557768_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP040440.1\|WP_005407919.1\|545404_545884_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP040440.1\|WP_049395664.1\|552202_553267_+\|methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_CP040440.1\|WP_024957100.1\|551409_551700_+\|DUF3247-family-protein	unknown	unknown	gnl\|CDD\|371627
NZ_CP040440.1\|WP_049395653.1\|560793_561585_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP040440.1\|WP_005407938.1\|564770_565349_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP040440.1\|WP_049395660.1\|558047_558959_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293825
NZ_CP040440.1\|WP_043033919.1\|553961_554645_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NZ_CP040440.1\|WP_005412128.1\|547316_548384_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP040440.1\|WP_012479031.1\|554759_555968_-\|beta-ketoacyl-ACP-synthase-I	unknown	unknown	gnl\|CDD\|181184
NZ_CP040440.1\|WP_049395665.1\|549377_551366_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236842
NZ_CP040440.1\|WP_043033923.1\|548569_549133_-\|DUF3016-domain-containing-protein	unknown	unknown	gnl\|CDD\|378666

Protein	Function_ID	Function_description	E-value
NZ_CP040440.1\|WP_049395654.1\|559867_560797_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.21989e-83
NZ_CP040440.1\|WP_005407927.1\|553263_553965_+\|pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	4.64966e-75
NZ_CP040440.1\|WP_012479034.1\|559120_559759_-\|NAD(P)H-binding-protein	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	1.07738e-67
NZ_CP040440.1\|WP_005412127.1\|546033_547338_+\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NZ_CP040440.1\|WP_005407930.1\|555967_556483_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	3.90362e-120
NZ_CP040440.1\|WP_049395649.1\|562447_564289_-\|TonB-dependent-vitamin-B12-receptor	gnl\|CDD\|273802	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor. This model represents the TonB-dependent outer membrane receptor found in gamma proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). [Transport and binding proteins, Other, Transport and binding proteins, Porins].	0
NZ_CP040440.1\|WP_049395651.1\|561649_562306_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	7.50763e-84
NZ_CP040440.1\|WP_049395662.1\|556673_557768_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP040440.1\|WP_005407919.1\|545404_545884_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	2.38136e-70
NZ_CP040440.1\|WP_049395664.1\|552202_553267_+\|methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	1.6327e-66
NZ_CP040440.1\|WP_024957100.1\|551409_551700_+\|DUF3247-family-protein	gnl\|CDD\|371627	pfam11607, DUF3247, Protein of unknown function (DUF3247). This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed at the N-terminal and internal regions.	9.01894e-24
NZ_CP040440.1\|WP_049395653.1\|560793_561585_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.56359e-16
NZ_CP040440.1\|WP_005407938.1\|564770_565349_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	8.42842e-35
NZ_CP040440.1\|WP_049395660.1\|558047_558959_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293825	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.31657e-96
NZ_CP040440.1\|WP_043033919.1\|553961_554645_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	8.38787e-59
NZ_CP040440.1\|WP_005412128.1\|547316_548384_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP040440.1\|WP_012479031.1\|554759_555968_-\|beta-ketoacyl-ACP-synthase-I	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
NZ_CP040440.1\|WP_049395665.1\|549377_551366_+\|PAS-domain-S-box-protein	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	5.94228e-63
NZ_CP040440.1\|WP_043033923.1\|548569_549133_-\|DUF3016-domain-containing-protein	gnl\|CDD\|378666	pfam11454, DUF3016, Protein of unknown function (DUF3016). This is a bacterial family of uncharacterized proteins.	5.21528e-65

>NZ_CP040440.1|WP_043033919.1|553961_554645_+|HAD-family-phosphatase
MTTIAALPFLPDAVIFDMDGLMIDSERVSLACWSQAADEFGLGLDEAVFLRMVGLGDRDTHALLRAQGIEDSVIEAVAARCHDLYEARTQTGLPLRPGILELLQLLKAHAVPRAVATTTRQPRANRKLAAAGLLPYFDAVITSGDVARPKPAPDIYLLAAQRLGQAPERCLALEDSPAGTRAALAAGMTVIQVPDLVHPDEELRALGHRIVGSLVDAHALLLPLLPR
>NZ_CP040440.1|WP_005407927.1|553263_553965_+|pseudouridine-synthase
MKLVKLIANLGYGSRKQVQWMFREGRVTDADGEVLYADDQVPHEAIRVDGEPLDPPVGLSIALHKPAGYTCSTKDTGRLIYDLLPPRFRDRDPVLSTVGRLDRETSGLLLLTDDGGLLHRIISPKSKLPKVYEVELSDDLRGDEVALFASGTLMLESEKTPLLPAELEVLDARRARLVLHEGRYHQVRRMFAATGNHVQALHRSRVGGLDLQGLDEGQWRQLTSTDLDTLFAP
>NZ_CP040440.1|WP_049395664.1|552202_553267_+|methyltransferase
MASSDDAPLQTLFLPFSQGALRWPEGPVAFLRARDGWPLREVAGNREVHCEQSFAPFAQPLQQAAGWTVSGQLDDVAGKGRYPLVLVLPPRQREEARALFARALALVADGGRIVACQSNNEGARSGEGDLKQLTGLGGSLTKNHCRVYWTAPMQGQHDADLAKRWSALDAVRPIVGGRFLSRPGVFAWDRIDPASALLAEHLPADLAGRAADLGAGYGYLSRELLERCPKITALDLYEAEQRALALAELNLAPPPRPLPLRFLWQDVTAGIEPGYDVIISNPPFHTPSRADRPDIGQRFIAVAAQALRPGGRLYVVANRHLPYEYTLNESFGAVRVIAERDGFKLVEAVKGKGK
>NZ_CP040440.1|WP_005407925.1|551782_552046_-|hypothetical-protein
MRALFVGGVVDNSEMDLEGSHPPVHYPEDTGGGHSRYRLHQVGHGADGSVAYAVYGAPDLADDEVARVAEERAYARRFEATPTLFEH
>NZ_CP040440.1|WP_024957100.1|551409_551700_+|DUF3247-family-protein
MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRLPPRV
>NZ_CP040440.1|WP_049395665.1|549377_551366_+|PAS-domain-S-box-protein
MMVPAPEPDLHHGVLERINAGFCVIQVLFEGDRAVDYRFIEVNDAFERHTGLKDARGQRMSALEPNHEEDWFRIYGEVARSGRPAQFEMEARALGRSFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLRTLLGEAIGAQELVAEGKALDVNLQLPKQPSLVLGDATRLQQVFWNLLSNAIKFTPAEGRIDVQLQADGTHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVAAASEGHGHGATFTVRLPQHLPDAERRPLREVISGPILEPVIVEPYPLRGMHVLAVEDQPEVLEYLRRMLEEQGASVSAASSAGEALALLADTGHLQYHVMLTDIGMPGMDGYGLVRTLREDMGVDAATLPAVAVTALARADDRRRALASGFQEHVAKPYSVAQLVAAVRKVQVPRADSALH
>NZ_CP040440.1|WP_043033923.1|548569_549133_-|DUF3016-domain-containing-protein
MKRALVIALLAGALVVSGANAAARNVTGTDAPRALQANGPVSVKWEDPATFTEIRQSTNRFEAERGDWVQQLARYLQTTAAKPLQPGQTLDVTLVDIKRAGDYEPWHGPRARDIRVMRDIYPPRITLQYTLKDADGRIVSEGDARLSDSGYLQGSGLLTNSDPLRYEKRLIDDWVKRQLASQATAAR
>NZ_CP040440.1|WP_005412128.1|547316_548384_+|alanine-racemase
MRPARALIDLGALRSNYRLARELGGGKALAIIKADAYGHGAVRCAQALEGEADGFGVATIEEALELRQAGIRAPILLLEGIFEPSDMALVAEHDFWFAVGSPWQLEAVAAFDSPRPLTVWLKLDSGMHRLGLDVDSFRAAHARLSALPQVERIVLMTHLARADELDSERTHEQAATFARAIDGLHGETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDDTTLTERLRPVMTMQSKVIAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYPQFAPNGTPVLIDGQPGALIGRVSMDMLTVDLTAHPQAAVGSVVELWGSAPTLAELAPRCGVSAYQLPCAVKRVAKVYV
>NZ_CP040440.1|WP_005412127.1|546033_547338_+|D-amino-acid-dehydrogenase
MRVLVLGSGVIGTTSAWYLRQAGFEVTVIDRQPGPALETSFANAGQLSFGYTSPWAAPGVPKKAIGWLFEKHAPLAIKPGMDLAQYRWLWQMLRNCTHERYAINKARMVRMSEYSRDCLNELRAQIGIEFEGRDLGTTQLFRTQQQLDASAQDIEILAQYGVPYEVLDRAGIIQAEPALAHVDGLVGALRLPRDQTGDCQLFTRRLAQMCVDAGVEFRFDQDITGLEFDGDRITGVRIDGKLETADRFVVALGSYSPALVAPLGMRLPVYPLKGYSLTLPITDPAMAPTSTILDESYKVAVTRFDDRIRVGGMAEVAGFDLSLSQRRRETLELVVSDLYPKGGDLSRAQFWTGLRPATPDGTPVIGATPFRNLYLNTGHGTLGWTMACGSGRYLADLMSARQPQISTEGLDIFRYGQYGHAPQQENRTCVLPAR
>NZ_CP040440.1|WP_005407919.1|545404_545884_-|winged-helix-turn-helix-transcriptional-regulator
MATRTRELDKIDRKILRILQAEGRISFTELGERVGLSTTPCTERVRRLEREGVITGYHAHLDPAAVKASLLVFVEISLAYKSGDIFEEFRRAALKLPNVLECHLVSGDFDYLLKARISEMASYRKLLGSTLLTLPHVRESKSYIVMEEVKETLSLPIPD
>NZ_CP040440.1|WP_012479031.1|554759_555968_-|beta-ketoacyl-ACP-synthase-I
MRRVVITGMGITSCLGNDLDTVSAALREGRSGITALADHAEAGLRSQVGGRVDLDLEALIDRKQKRFMSDAAAFAYLAMRDAIADAGLSAEQVSSLRTGLIAGSGGGSSEWQIGAVDLLRERGVRKVGPYMVPRTMCSTVSACLATAYQIKGVSYSLSAACATSAHCIGAAADMIRHGAQDIMFAGGGEDLHWSMSVMFDAMGALSTSFNETPASASRPYDKDRDGFVIAGGGGMLVLEDYDHAVARGAHIHAELIGYGVTSDGADMVAPSGEGAVRCMKMALQGVDRPLDYLNTHGTSTPLGDVTELNAIREVFGDAVPPLSSTKALSGHSLGAASVHEAIYCLLMMRDGFVAGSANIGELDPKVESFPILRESREQKLDTVMSNSFGFGGTNAALVFGRV
>NZ_CP040440.1|WP_005407930.1|555967_556483_-|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA
MTRLHAFNREQLLASARGELFGTAAGRLPNDPMLMFDRITDIREDGGPHGKGMVRAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLTGFFLTWLGAPGKGRALGCGEVKFTGQVLPEAKLVRYEIDISRVINRKLVMAQSDARMYVDDREIYSARDLRVGLFTETGSF
>NZ_CP040440.1|WP_049395662.1|556673_557768_+|DNA-polymerase-IV
MTRLRKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTEPKSGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRVPGVGKVMEGKLAARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFAEDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLKLKTAQFRILTRSFTPERPPESMEELRDIALALRARVDLPAETRYRLVGVGLGGFREKEPVVQGELFEQGPNDSPRS
>NZ_CP040440.1|WP_049395660.1|558047_558959_-|MBL-fold-metallo-hydrolase
MRTATLLLPLALAASFTSAPLLAAPATAAPAAVTKSQLHLQTFHPGPQAMFSVSSVLIEGRRDTILVNAQFGASDARKLVELIRASGKQLTTIYISHGDPDYYFGLATLQDAFPQARIVATAQTVAHIQQTQAGKLAYWGPKMGADVPSRIVVPQVLDGDALQLEGQRLPLIGLDGPTPDRTVLWVPSLRAIVGGIPVVAGEHVWMADTQTPKSHADWLQTLQQLQALKPKVVVPGHYAPGAALDASALVFTADYIRAFDAETAKAKDSAALVKAMQARYPKLAGVASLELSAKVAKGEMQWP
>NZ_CP040440.1|WP_012479034.1|559120_559759_-|NAD(P)H-binding-protein
MKIALVGSTGNIGRQIARHALANGHELTVIVRSAQDLPAELAGAHPVIASLDDQDALVAAIAGHDVLASAYGPRPGDDIGRVGEVAAQLAAAARKAGVPRLVVVGGAGSLEVAPGVQLVDTPNFPEAYKPYALAHREAFNRLQAVDDLDWTFFSPAAEIGPGEERGQYRVQPKAFLADASGHSRISYADYGAAFVAELEAQQYPKQIITAAY
>NZ_CP040440.1|WP_049395654.1|559867_560797_+|LysR-family-transcriptional-regulator
MDRLTAMTVFVEVAERGSLTAAAEVLDMSRAMVTRYLAEVEGWLGARLLHRTTRRVSLTGPGEAALVRFRQMLAIGEELHGELASDDPEPHGTLRVTASVSFGQSHLARAVAAFVARHPAARIELLLVDRTVNLVEERVDLAVRIARQIDPSLIARRLATCRSVLCATPSYLHARGTPTAPEHLAGHNCLTHHYVGKSLWQLHRDGRSLSVAVGGNISANEASLLLEAVRAGAGIAMLPTYQVAPLLRSGELIELLPEFSLDELGIHAVYASRRQQPAIMRRFLDFLAECFASPAFQDLDWRPPGKENT
>NZ_CP040440.1|WP_049395653.1|560793_561585_+|class-I-SAM-dependent-methyltransferase
MNHGQALIDHNRAAWDRQASEVREWSRPVESSTIAAARDGRWQVHLTPRALPLDWLGDVRGRRVLCLASGGGQQAPVLAAAGADVTVFDLSDGQLEQDRSVAARDGLQLRTVQGDMRDLHAFANDSFDVVFHPISNLYVPDVRPVWTECRRVLARDGMLMASFYNPVLFVGARDPQLDAQGLIRPQYAIPYSDLEDLPPAEREAKLARGDALTFGHSLTELIGGQLDAGFVIDRFMEDWQPQPRFLIDRYLPTFLATRARRIG
>NZ_CP040440.1|WP_049395651.1|561649_562306_+|phosphoglycolate-phosphatase
MPYPYPLVVFDLDGTLVDSAADIAEALNRTLEDIGVARVPEATVLGWIGDGVRRLVEQAVQAAGREVDLAEVMPVFMVHYRECLLRSPRLFDGVGEALAQLRARNVPLAICTNKPEALVPPLLQHLGIGDAFALVLGGDSLPQRKPSGEPLRHIAAHFGLPVESCLMVGDSLTDYRAAEEASMPIALVRYGYPRGLDLATAHAVAVIDDLRELPGLRG
>NZ_CP040440.1|WP_049395649.1|562447_564289_-|TonB-dependent-vitamin-B12-receptor
MKLQSRMLSLAVLAALPALAQAANDTTALDQILVTATRTPIALQDSIAPAQVIDRAQIESSQATSLQELLRGRAGINMANAGGLGKQSSLFLRGTNSGHTVVLVDGVRINSADLGLAMYQDLPLAQIERVEIVRGPQSSLYGADAIGGVIQIFTRRNQGDFAPHFQLGGGSNGLREASGGIGGGTERGWFGADIAYQHSDGIDACRGSATLFAGCFADEPDRDGYRNLSKSLRGGYTFNDQWNVEGSALRADGRNHYDGYYNYSETRQQVLAGKVRYTPSERLAFTANVGRSDNESDNFGDFGARGSAQTHRDSASLQGDFGVAEGQLLSAGVDWSEDNLDGSSAGYLVDSRRNTGVFVQYQGRFGRHQLQASARNDDNQQFGNHATGSVGWAMELGHGLRLNASYGTAFKAPTFSDLYDPWSGVPTLKPEKSKSANLGVSQQGQGWHWGLDVYETRIDDLITYDAATFKMQQVEKARIRGAELTGGVLLAGFDINAQLSYTDPRNRTGGSAQFDNWLPRRAQQTARLDIDRRFGDFRAGLTVQGAGKRYDDASNAVKVGGYGTLDVRAEYALTPSWSLLARAANVFDRRYETVAWFNQPGREYQLSVRYQPK
>NZ_CP040440.1|WP_005407938.1|564770_565349_+|histidine-phosphatase-family-protein
MILDLVRHAGNGRDEFLDGRSDPPQLAGLPQELVEAYAGQRWERVISSPRLRALHTAMALATPRGLDVEADEEWEELDFGDWDGRSLFDLPEDALAAFHADPHAFPPPNGESWGHFERRIARALDRLLDDDDPVPTLVVSHGGPLRMVLSQVCGLPMSLCWALRIDHGTRLRVWLERGEIGLVGELLELQQP

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Crispr_ID: NZ_CP040440_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040440_4

782184-782283

Orphan

Consensus_repeat	Method
TCATCCACGCATGGCGTGGATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040440_4

>merge|NZ_CP040440|4|782184-782283|CRISPRCasFinder
TCATCCACGCATGGCGTGGATCTGCCTCATTGAAAGGCAAACAAAAAAAGCCCGGGTGTCTGCACACCCGGGCTTCTTCATCCACGCATGGCGTGGATCT

>NZ_CP040440|4|4|782184-782283|CRISPRCasFinder
TCATCCACGCATGGCGTGGATCT	GCCTCATTGAAAGGCAAACAAAAAAAGCCCGGGTGTCTGCACACCCGGGCTTCT
TCATCCACGCATGGCGTGGATCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040440.1\|WP_049397450.1\|788636_789236_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226243
NZ_CP040440.1\|WP_005408115.1\|783272_784571_-\|nucleoside-transporter-NupC	unknown	unknown	gnl\|CDD\|224883
NZ_CP040440.1\|WP_049397461.1\|784764_785736_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381369
NZ_CP040440.1\|WP_012479176.1\|778162_779158_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP040440.1\|WP_049397447.1\|779444_779876_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_012479171.1\|770513_772229_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|153248
NZ_CP040440.1\|WP_005408109.1\|777277_778105_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|181382
NZ_CP040440.1\|WP_049397446.1\|775288_777139_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_005412278.1\|786040_786235_+\|hemin-uptake-protein-HemP	unknown	unknown	gnl\|CDD\|378463
NZ_CP040440.1\|WP_049397460.1\|779985_780903_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176164
NZ_CP040440.1\|WP_086016257.1\|794278_795025_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP040440.1\|WP_005408121.1\|792856_793504_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP040440.1\|WP_049397445.1\|774281_775292_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NZ_CP040440.1\|WP_005408103.1\|768979_770191_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP040440.1\|WP_049397451.1\|789309_790236_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_012479173.1\|773164_774223_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP040440.1\|WP_049397453.1\|793579_794224_+\|arylesterase	unknown	unknown	gnl\|CDD\|238860
NZ_CP040440.1\|WP_049397449.1\|786424_788632_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP040440.1\|WP_049397452.1\|790343_792860_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225669
NZ_CP040440.1\|WP_049397444.1\|772225_773026_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|277343

Protein	Function_ID	Function_description	E-value
NZ_CP040440.1\|WP_005408115.1\|783272_784571_-\|nucleoside-transporter-NupC	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	9.89476e-142
NZ_CP040440.1\|WP_012479171.1\|770513_772229_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|153248	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.	8.5976e-58
NZ_CP040440.1\|WP_012479176.1\|778162_779158_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	2.53424e-147
NZ_CP040440.1\|WP_049397461.1\|784764_785736_+\|aldo/keto-reductase	gnl\|CDD\|381369	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR). Voltage-gated potassium channel subunit beta (KCAB) from Arabidopsis thaliana and Egeria densa are founding members of aldo-keto reductase family 6 member C1 (AKR6C1) and C2 (AKR6C2), respectively. KCAB, also called Shaker channel b-subunit, or K(+) channel subunit beta, or potassium voltage beta 1, or KV-beta1, or KAB1, is a probable accessory potassium channel protein which modulates the activity of the pore-forming alpha subunit.	0
NZ_CP040440.1\|WP_005408109.1\|777277_778105_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	2.86608e-27
NZ_CP040440.1\|WP_049397450.1\|788636_789236_+\|hypothetical-protein	gnl\|CDD\|226243	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism].	0.00282095
NZ_CP040440.1\|WP_005412278.1\|786040_786235_+\|hemin-uptake-protein-HemP	gnl\|CDD\|378463	pfam10636, hemP, Hemin uptake protein hemP. This is a bacterial family of proteins that are involved in the uptake of the iron source hemin.	2.47066e-16
NZ_CP040440.1\|WP_049397460.1\|779985_780903_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176164	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 6. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.67583e-83
NZ_CP040440.1\|WP_086016257.1\|794278_795025_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.31743e-76
NZ_CP040440.1\|WP_005408121.1\|792856_793504_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.38013e-97
NZ_CP040440.1\|WP_049397445.1\|774281_775292_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.00239e-43
NZ_CP040440.1\|WP_005408103.1\|768979_770191_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP040440.1\|WP_012479173.1\|773164_774223_+\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	9.51743e-26
NZ_CP040440.1\|WP_049397453.1\|793579_794224_+\|arylesterase	gnl\|CDD\|238860	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.	5.61805e-87
NZ_CP040440.1\|WP_049397449.1\|786424_788632_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	5.02588e-125
NZ_CP040440.1\|WP_049397452.1\|790343_792860_-\|FtsX-like-permease-family-protein	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	7.53187e-179
NZ_CP040440.1\|WP_049397444.1\|772225_773026_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.19965e-70

>NZ_CP040440.1|WP_049397460.1|779985_780903_-|LysR-family-transcriptional-regulator
MLPTERLRGIEAFVATADAGSFTAAAERLHLTSSAVGKTIARLEARLGARLFERSTRRLRLTEAGEGFYRTCVRVLGELADAESVLVSHADAPVGRLRVDAPATFGRLKAWPLLLQLAAEFPQLHPQVTFSDRFSDLAEDGVDLAVRIGGPEPLPATLGSRLLGYECLRFCASPAYLLRHGQPRSAAELAGHDGVLFGRADGSIGPWLVADGRQRSTPLQARARLVVGSAEAQVAAVEAGFGIAQLATWLVDDALARGSLVSILPSLDCRGLPLRLLWPQGRQRLPRVDVALDRLGAGLQIDPPR
>NZ_CP040440.1|WP_049397447.1|779444_779876_-|hypothetical-protein
MDGFPWLLVAAAGSAIAALLHIGCIAFGAAWYRYFGAGQRMVRLAQAGHWWPPLMTAGITAVLVAWTLYALAAAGWHSPLPASRLVLSGIALLLLLRAAMGFGLALFRPGYNGARFWIVSSLVCLGLGLAFALGARQAWETLG
>NZ_CP040440.1|WP_012479176.1|778162_779158_-|tRNA-dihydrouridine-synthase-DusB
MQIGPYTIAPNVVLAPMAGVTDKPFRLLCKRLGAGLAASEMTISDPRFWNTRKSIHRMDHDGEPAPISVQIAGTEPQQLAEAARYNVDHGAQIIDINMGCPAKKVCNAWAGSALMRDEQLVARILEAVVNAVDVPVTLKIRTGWDCDHRNGPLIARIAEDSGIAALAVHGRTRDQHYTGQAEYATIGEIKAALRIPVIANGDIDSPQKAAYVLKETGVDAVMIGRSAQGRPWIFREVAHYLATGEELPPPSLAEVRDILLGHLHALHAFYGEPQGVRIARKHLGWYAKDRPENAAFRAVVNRAEDPASQIALTTEYFDRLIAGEPALPSAA
>NZ_CP040440.1|WP_005408109.1|777277_778105_-|class-I-SAM-dependent-methyltransferase
MTPPISSPTYLHGFSGTEQQRLMTQARLLESSIFGQIDYSGARRLLEVGSGVGAQTEILLRRFPELHVTGVDLSETQLATARENLARTPWCSDRYTLQQADAGELPFEARSFDAAFLCWVLEHVPSPARVLSEVRRVLAPGSPVYITEVMNASFLLDPYSPHIWRYWMAFNDFQYDHGGDPFVGAKLGNLLLAGGFRDVHTEIKTIHLDNREPARRKTMIAFWEQLLLSAADQLLQAGSVDEETVEGMRREFRLVQNDPNAVFFYSFVQGRATVY
>NZ_CP040440.1|WP_049397446.1|775288_777139_-|hypothetical-protein
MDLTCERMMSDSGRTPFSTHDVNLPGGLLPSQTRLLAGIIALLCILYVAFALTPSSYSLAYEYLGLAPQNPVLGSARMIRSDEWIVFTPYIQIAVNNDFGQFNAHSPYHESLRTFQALPLLDWGLLFKPYHWAFFVLPAANAYSFFFMFMAMAFLSGWALFLRQLRMPVPAAVLVSATLFFAPFVQVWWTSNAGAFALAPWAAAAWLCIGNRWVRILASAYALAVWVIAVSYPPFIISSLLAMAVLVLAFRRDALTLPRLIDAGIAGALALAVFIGYFHDIIPIVRNTVYPGQRQSAGGGVGLTSLFAHVFPNLMTYRFAPLPMFKGSNECEIAVLGSLLPLFTLVLADGARLREWVRGHRGSVLALAAGVLLIACWIFLPVPVLVGKLTGLSMVPPARALLAFGLLLNIGCAMILVHCGVRLERRRLLLLAALLMAGSVAKFLFGEGQFSRLHSAADAIPYLCLAGLAVAARRPKLSAHAATLVLATAALANLLGNGLFNPVQPAGPIFAMDRTAVLHSLQARGSATTPEGALVAPGGFGALLPGVGIPAVNHVLYLPQMEYFRRYFPLMSDEAFNFTFNRYHHITVAPEGDAPQVLQGDLVELPAKALLAHPAP
>NZ_CP040440.1|WP_049397445.1|774281_775292_-|glycosyltransferase-family-2-protein
MSPMTTSTPSASTPARIAVIIPCYKVTRHVLSVLAAIDDAVTAIYCVDDACPDGSGRLIQAEANDPRIAVLFHQHNLGVGGAIKTGYRAAIADGMDILVKVDGDGQMDPALLMDFVAPIADGHADYTKGNRFWNLTHIRRMPPVRRLGNLLLSFMTKASSGYWQVFDPTNGYTAIHAKVASHLKLEAVSDRYFFETDMLFRLNTVRAVVQDVAMDAHYGDETSNLRIGRILGEFSFKHLRNTLKRIAYNYFLRDLSIASLELIAGSSLLAFGGLFGLYHWVRSAQADVATPVGTIMIAMVALISGLQFLLAFVGFDIANVPRQVLNRSIKLNRQPQ
>NZ_CP040440.1|WP_012479173.1|773164_774223_+|metal-dependent-hydrolase
MDSLTQIVLGGAVAAAIAPPGHRRAALLAGAALGTLPDLDALWLGFTAADPVANMIEHRSFSHSLLVLPWVAALIWWLFKRFGNGRVAQSPVRWFWAIQLALVTHPVLDAFTVYGTQLWWPLRPHPTMGSSVFIIDLGYTVWLLLGCVLAWFGRARPWAGKVLGVALLLSSAYLGWGLIAKAQVDRAAQQSLAAMGLGDAPRFSVPMPFNTLLWRVVAMTPNGYVVGDRSLVADHGPMQFEGHASNVQALREAGSIPAVQQLTWFNRGFMRAQVVDGRLVLSDLRMGLEPDYTFNFAVAEQVDGQWRPITPEQVRTDYSSPAARADAGRRLAAMWQRIWHEPAASATGAAHP
>NZ_CP040440.1|WP_049397444.1|772225_773026_+|UDP-2,3-diacylglucosamine-diphosphatase
MSVLANLSPHRRAVFVSDVHLGSRHCHATELARFLSQLRCERLYLVGDIIDLWWMAHRRANWRQSHSEVIQALHALRRAGTEIIYIPGNHDASLRQVCGLMLPAMQVRRRAIHVTADGRRLLVAHGDEYDGVTHFGGLQEKFGDWLYYRILTGNQALNAVRRRLGMRYWSLSEFLKKRSGAAERYIERFVQAGLDDVRRRGLDGIVCGHIHRAALVERDGLVYANDGDWVESLTALAEDHDGALRLLDHNGQTLVELPGARLSQAA
>NZ_CP040440.1|WP_012479171.1|770513_772229_+|GNAT-family-N-acetyltransferase
MQELEQRLQQRFPDWFHGRRGQLARPLLRSVGRWSRLDQIEAFLQRSAGLRGFGFVAAGLEFIDGQYQVDPAALAKIPATGRLLIVANHPSGALDALALLDAVGRIRRDVRIVANDLLGAIAPLQDLLLPVRILGGKAQRGSLHAVEEALAAEQCVIVFPAGEVSRLSLRGIRDGRWQRGFVRFARAAGAPVLPVRVEARNSALFYGASTLFKPAGTALLAREMFTRRGRPLRLSIGEPMQLGKGGDPGAQLLAVRRALYALGRNGAAGNAAAFAGPEPLAAPVPPSQVAAGIAAATQLGQTADGKQILLATCTADSPLLLELGRLRELTFRQVGEGTGRSRDLDDFDSRYEHIVIWDAAAQRIAGAYRIMRGAHALARHGLSGLYSASLFRYSDDAITHIAEGLELGRSFVVPDYWGSRSLDYLWQGIGAYLQCRPGIRYLFGAVSISAALPRDAREQLVAYYQRYYGGTAGLAESNRPFQYFAAPPSFGELDAGAAFDVLKANLAALGTGVPTLYRQYTDLCEPGGARFLAFGVDPDFSDSIDGLIEVDLCAIRPNKRKRYLRDAGTPA
>NZ_CP040440.1|WP_005408103.1|768979_770191_-|methionine-adenosyltransferase
MSSYLFTSESVSEGHPDKVADQISDAVLDAILTQDQRARVACETMVKTGVAIVAGEITTSAWIDLEALTRKVITDIGYDSSDVGFDGATCGVLNLIGKQSPHIAQGVDRKKPEEMGAGDQGLMFGYATNETDSYMPAAIHLSHRLVEQQAKIRKKKNSPLSWLRPDAKSQVTLRYENGVVSAIDAVVLSTQHAPGIKQKDLIEAVREEIIKPVLPAKWLHKGTKFHINPTGKFEIGGPVGDCGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKISDDKIEKLIRKHFDLRPYGIIKMLDLIHPMYQQTAAYGHFGRKPKEFSYLNGEGETVNATAFSWEKTDRAAALRADAKLK
>NZ_CP040440.1|WP_005408115.1|783272_784571_-|nucleoside-transporter-NupC
MVEGLGRIGFGLFGLAVLIGITWLFSNNKRAVDWKLVATGITLQIAFAALVILVPGGRDVFDALGHGFVKVLSFVNEGSGFIFGSLMDTKNYGFIFAFQVLPTIIFFSALMGVMYHLNIMQAIVRVMAWAITKVMRVSGAETTSVCASVFIGQTEAPLTVRPYIARMTQSELLTMMIGGMAHIAGGVLAAYVGMLGGGDPAQQAFYAKHLLAASIMAAPATLVVAKLLIPETGTPLTRGTVKMEVEKTSSNIIDAAAAGAGDGLKLALNIGAMLLAFIALIALLNAPLTWIGEVTGLAAQIGKPTNLSTIFGYLLAPIAWVIGTPWADATTVGSLIGQKVVINEFVAYTELSQIVNGQVAGVSLSSEGRLIATYALCGFANFSSIAIQIGGIGGLAPERRHDLAKFGLRAVLGGTIATFMTATIAGVLTHFS
>NZ_CP040440.1|WP_049397461.1|784764_785736_+|aldo/keto-reductase
MQYRRLGSTGLPISALSFGAWVTFGDQIPRDEARNLVAAAWDHGVNFFDNAEGYANGRAEQVMGDVIADLRLPRDGFCVSSKVFFGSAKDPRPTQRGLSRKHVTDACHAALKRLRVDYLDLYYCHRPDPDAPIAETVHAMDTLVRQGKILYWGTSEWSAVQIQQALDIAEARNLQGPSMEQPQYNLLHRERVEVEYAPLYAGAGLGTTIFSPLASGLLTGKYDQGIPADARLGREGMEWLQDLVLGADAGARLGQVRRFSEVARALGHAPATLAIAWCLRNPNVSSVILGASRVSQLLQNLKALDVLEQVDAAGWAQVEAVFA
>NZ_CP040440.1|WP_005412278.1|786040_786235_+|hemin-uptake-protein-HemP
MNAQPVLLRPETLTLRDRPVRVVPPEEVIDSEALLKGRREILIQHGDRFYRLRHTSNDKLILTK
>NZ_CP040440.1|WP_049397449.1|786424_788632_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MALPLSAHAAATAAPDAREFDRVQVTATRTERAVSDVAATVDVIDREQMDRHLVQDIKDLVRYEPGLSVTRSATRFGLDGFRIRGLDGNRVRIQTDGIVMPTRFDIGSFASSNRNFTDLDTLKRVEIVRGPASSLYGSDALGGVVAFVTKDPADYLKDGKNSYFGLKFGYDGEWKGLLGGVTAAFGGDHWSGLVNVNHHQGQETDNKGTVRSDNDTRTASNPQDRDGRSLLSKLVYAPSEDQRFRLTVEGNEDTTDTNVLSAIASVAPRPGAMAAATGMKSHDTQKRNRVSFAHEMDALDQPFADSLHWQVYAQNSETRQQTDETRTDGTRRHRVFSFDQHAYGLQAQFNKAFATGSVEHALTYGFEGTRTEIRQKRDGYQVSKAGVVSNTVLPDTFPVRDFPISKTTELGLYAQDEMRFADGRLSLVPGVRVDRYELKPEVDSIFAEDNPTTAVAQLKKTSVSPKLGMVWRFTDEWSLFAGYARGFRSPPYNDVNIGLTNVAFRYTAIANPDLKPETSDGYELGLRFIAPAAYVSVSGYYNDYKDFIQSNVDTGRNAQGLTVFQSQNIADARIYGAEMKAGIEFGELSPALKGWALRSALAWSRGDNRTDDEPLASVDPLRGTLGLMYDTDTWGVELAGTFVQRKKRLPPPAAQTNPNAPAPFVYQPAGYGVLDLMAHWNFAPGATFNVGVFNLADKRYIEWSSITPSLISDRALSDRFSSPGRTFSASLAVSW
>NZ_CP040440.1|WP_049397450.1|788636_789236_+|hypothetical-protein
MSRALSARRNDSIAAPNSAAWPTPAQLATLGTVLCLYHADGNELGGWRQAVRVHACQGVDSEGLRESLCFLDGRGRCVWRLYLLPDSDFLAWDRLVAPLPPGPEHDVEASVGERLWRRLAGHLGGQRWRLCALRLHAADDGRTLAASLSTLSSLGAATARRIARLEGAEGELAIDDCCCADAARRPAPQIPGDLPLIRL
>NZ_CP040440.1|WP_049397451.1|789309_790236_+|hypothetical-protein
MKLQTASAMLLLAASGVASAQPSDIARDHDSILAMQGEYTVDFAFDETVLLKPGYERAPAMRSGGSEVVIVVEDTPKRIVLQHLLLDEKSGHITKHWRQDWVYEAPNRFEFSADQTWKVRSIPSAVNQGAWTQCVYEVSDAPRYCGTGTWTYTNNVPSWTSDLSWRPLPRREYTKRSDYNALAVVNRHTLTPNGWTHEQFNTKVQRNADGSQVEIAREFGFNDYVKTTEVDFTPARNYWKATAGYWAKVRQRWDGFLTQAPGVHLKTRIDGMAMIIPLFTQAEEIQSGKKVKDKQIDEVFAKYVEKAQ
>NZ_CP040440.1|WP_049397452.1|790343_792860_-|FtsX-like-permease-family-protein
MNLLRHAWRALRREALAGDLLTVFAALVLGVAVMTAVGTLVNRVNLALTGSAAEMLGGDLGIAGRDDPPQAFADEAQRRGLAFTRIASFGSVLFNGDASQMASIKAVQAGYPLRGTLRVRATPGGALVAEAGMPPKGQAYADPRLLQGLGLKAGDDLEFGAGTLRIAGIIEAEPDTGGDLLTLSPTLLVNRADVEGTGLLGPGSRINYRLMFAGSADQVAALRQWLLPQVKGLRLLSVDDTQRGVRQAFDLAGRFLGLSALLAVLLAGVATALAANRFALRRIDQVAILRCLGARQRDILLGLALQLLMLALPACALGIGLGMAAQEGLVQVLGSLVPQRLPLPEAIPALTGAGIGLLLLFGFGLPPLLRLRGVPPMRVLNRSFAALPPASLLAYVAALAASLLLAVQVTGDLKLALWVLGGLAALAVAAGVVGFVLLQLLRGLQHRLHGHWRLGLAALTRRRMLAVMQLVGLSLSLCALLLLAVTGPGLLQQWRERLPADTPNYFLINIQPEQRDSVLAALRGLGANDASIEPMATGRLIAINGKPPLRVDRSPDQSGQPASGEAQRDDDDENRPLNFSWRSSFPPANTLMNGTFWTPDSTAPEASVEIGWAKRYGVYPGDRITIAVGEQEREFTVTSVRKADWNTFRPNFFVLLNPNAVGDTPHNLLSAFHLPAGKAAGLGELVRAQPNLSLLDVDAVISQVRDVMERVAQAVQLVMVFSLLAGVLVLLAALQATAGERRYDSAVLRTLGATRRQLRGAVLVEFGALGTLAALLAVGAAAAIGVAVSQKVFELPLLPPWPGLLIGGVVGIGLSLLAGWWGTRAILHTPPALALREA
>NZ_CP040440.1|WP_005408121.1|792856_793504_-|ATP-binding-cassette-domain-containing-protein
MQGPEGEVHILDNITLTVHEGTSVAIVGASGSGKTTLLGLLAGLDLPSRGRIALAGQDLSALDEEARAQLRAREVGFVFQSFHLLPALTAAENVALPLELAGREDRARVDEVLAQVGLAHRARHYPRQLSGGEQQRVALARAFVTRPRILFADEPTGSLDHATGQHISDLLFELNAGSGTTLVLVTHDLRLAQRCQYIHRIDDGRLLPVERGAQA
>NZ_CP040440.1|WP_049397453.1|793579_794224_+|arylesterase
MRKTGWSRRAGAMMVLLLGFLLLPGLACAKGPAGTVLVLGDSLSAAHNIPADAGWVSLLQQRVRQQSKTPVRIVNASMSGETTAGALTRLPALLAKEKPTVVVIALGGNDALRGLTPAQVQGNLGKMVQASQKAGAKVLLLGIDVPPNYGPAYRQRLAAAYRALATQYKVPLLPFLLEGVALQPGMMQADGLHPTAQAQPKVLDNVWPLLRPLL
>NZ_CP040440.1|WP_086016257.1|794278_795025_+|response-regulator-transcription-factor
MFHKAEVRGNHMRQTKETSGLVLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEVCRRLRNDARKSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRRERRQVGSEVLKVADLVLDPVSMRATRAGTELQLSPIGLRLLTILMRESPRVVTRQEIEREIWGNGLPDSDTLRSHLYNLRKIIDKPFDRPLLHTVQSAGYRIADIAQPMA

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Crispr_ID: NZ_CP040440_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040440_5

2362300-2362552

Orphan

Consensus_repeat	Method
GCGTGGCCCATGCACGGATAGGTAGAGCCGGCCGCTGGCCGGCTGCCGGGTCC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040440_5

>merge|NZ_CP040440|5|2362300-2362552|PILER-CR
GATCGGTAGAGCCGGCCGCTGGCCGGCTTTTCCCCTCCTGCCGGATCACAGCAGCTGCCGGCCAGCGGCCGGCACTACCGACTGTGTATCACCTGTTGCGTGGCCCATGCATGGATAGGTAGAGCCGGCCGCTGGCCGGCTGCCGGGTCCTTGGGGCTGCCGGCCAGCGGCCGGCACTACCAAATGCGTATCACCTGATGCGTGGCCCATGTACGGATGGGTAGAGCCGGCCGCTGGCCGGCTGCCGGGTCCC

>NZ_CP040440|5|1|2362300-2362552|PILER-CR
GATCGGTAGAGCCGGCCGCTGGCCGGCTTTTCCCCTCCTGCCGGATCACAGCAG	CTGCCGGCCAGCGGCCGGCACTACCGACTGTGTATCACCTGTTGCGTGGCCCATGCATGGATAGGTAGA
GCCGGCCGCTGGCCGGCTGCCGGGTCCTTGGGGCTGCCGGCCAGCGGCCGGCAC	TACCAAATGCGTATCACCTGATGCGTGGCCCATGTACGGATGGGTAGAG
CCGGCCGCTGGCCGGCTGCCGGGTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040440.1\|WP_049396099.1\|2360473_2361277_-\|2,5-didehydrogluconate-reductase-DkgB	unknown	unknown	gnl\|CDD\|183012
NZ_CP040440.1\|WP_012480410.1\|2357732_2358110_-\|copper-homeostasis-periplasmic-binding-protein-CopC	unknown	unknown	gnl\|CDD\|377255
NZ_CP040440.1\|WP_012480404.1\|2363613_2364309_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP040440.1\|WP_012480412.1\|2356093_2356792_-\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_CP040440.1\|WP_049396100.1\|2363083_2363617_+\|DUF2796-domain-containing-protein	unknown	unknown	gnl\|CDD\|378529
NZ_CP040440.1\|WP_049396105.1\|2369153_2369711_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP040440.1\|WP_044570295.1\|2362577_2363051_-\|MerC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377004
NZ_CP040440.1\|WP_005413602.1\|2361395_2362298_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176167
NZ_CP040440.1\|WP_012480413.1\|2354729_2356097_-\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_CP040440.1\|WP_049396101.1\|2364301_2365555_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|274576
NZ_CP040440.1\|WP_080354166.1\|2358556_2359495_-\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|377240
NZ_CP040440.1\|WP_049396104.1\|2367616_2369149_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|184957
NZ_CP040440.1\|WP_049396097.1\|2358236_2358560_-\|adenylate-cyclase	unknown	unknown	gnl\|CDD\|226010
NZ_CP040440.1\|WP_049396103.1\|2366718_2367465_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_049396098.1\|2359514_2360462_-\|TIGR03571-family-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274657
NZ_CP040440.1\|WP_044570292.1\|2365557_2366109_+\|DUF3299-domain-containing-protein	unknown	unknown	gnl\|CDD\|378700
NZ_CP040440.1\|WP_049396102.1\|2366098_2366719_+\|DUF3299-domain-containing-protein	unknown	unknown	gnl\|CDD\|378700
NZ_CP040440.1\|WP_012480411.1\|2356837_2357722_-\|copper-homeostasis-membrane-protein-CopD	unknown	unknown	gnl\|CDD\|224195
NZ_CP040440.1\|WP_049396106.1\|2369880_2370777_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378976
NZ_CP040440.1\|WP_012480414.1\|2353722_2354664_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161

Protein	Function_ID	Function_description	E-value
NZ_CP040440.1\|WP_049396099.1\|2360473_2361277_-\|2,5-didehydrogluconate-reductase-DkgB	gnl\|CDD\|183012	PRK11172, dkgB, 2,5-didehydrogluconate reductase DkgB.	0
NZ_CP040440.1\|WP_012480410.1\|2357732_2358110_-\|copper-homeostasis-periplasmic-binding-protein-CopC	gnl\|CDD\|377255	pfam04234, CopC, CopC domain. CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm.	3.66029e-23
NZ_CP040440.1\|WP_012480404.1\|2363613_2364309_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.63572e-71
NZ_CP040440.1\|WP_012480412.1\|2356093_2356792_-\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	7.42065e-117
NZ_CP040440.1\|WP_049396100.1\|2363083_2363617_+\|DUF2796-domain-containing-protein	gnl\|CDD\|378529	pfam10986, DUF2796, Protein of unknown function (DUF2796). This bacterial family of proteins has no known function.	6.98772e-23
NZ_CP040440.1\|WP_049396105.1\|2369153_2369711_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.62669e-09
NZ_CP040440.1\|WP_044570295.1\|2362577_2363051_-\|MerC-domain-containing-protein	gnl\|CDD\|377004	pfam03203, MerC, MerC mercury resistance protein.	1.27212e-09
NZ_CP040440.1\|WP_005413602.1\|2361395_2362298_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176167	cd08478, PBP2_CrgA, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.65667e-118
NZ_CP040440.1\|WP_012480413.1\|2354729_2356097_-\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	5.85539e-113
NZ_CP040440.1\|WP_049396101.1\|2364301_2365555_+\|FtsX-like-permease-family-protein	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	1.95972e-08
NZ_CP040440.1\|WP_080354166.1\|2358556_2359495_-\|cyclase-family-protein	gnl\|CDD\|377240	pfam04199, Cyclase, Putative cyclase. Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.	1.56352e-26
NZ_CP040440.1\|WP_049396104.1\|2367616_2369149_+\|MFS-transporter	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	1.12277e-87
NZ_CP040440.1\|WP_049396097.1\|2358236_2358560_-\|adenylate-cyclase	gnl\|CDD\|226010	COG3479, COG3479, Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	0.00992793
NZ_CP040440.1\|WP_049396098.1\|2359514_2360462_-\|TIGR03571-family-LLM-class-oxidoreductase	gnl\|CDD\|274657	TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family. This family is a distinct subgroup among members of the luciferase monooxygenase domain family. The larger family contains both FMN-binding enzymes (luciferase, alkane monooxygenase) and F420-binding enzymes (methylenetetrahydromethanopterin reductase, secondary alcohol dehydrogenase, glucose-6-phosphate dehydrogenase). Although some members of the domain family bind coenzyme F420 rather than FMN, members of this family are from species that lack the genes for F420 biosynthesis. A crystal structure, but not function, is known (but unpublished) for the member from Bacillus cereus, PDB\|2B81. [Unknown function, Enzymes of unknown specificity].	1.02376e-118
NZ_CP040440.1\|WP_044570292.1\|2365557_2366109_+\|DUF3299-domain-containing-protein	gnl\|CDD\|378700	pfam11736, DUF3299, Protein of unknown function (DUF3299). This is a family of bacterial proteins of unknown function.	3.99382e-47
NZ_CP040440.1\|WP_049396102.1\|2366098_2366719_+\|DUF3299-domain-containing-protein	gnl\|CDD\|378700	pfam11736, DUF3299, Protein of unknown function (DUF3299). This is a family of bacterial proteins of unknown function.	6.35438e-42
NZ_CP040440.1\|WP_012480411.1\|2356837_2357722_-\|copper-homeostasis-membrane-protein-CopD	gnl\|CDD\|224195	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism].	1.47495e-20
NZ_CP040440.1\|WP_049396106.1\|2369880_2370777_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378976	pfam12852, Cupin_6, Cupin. This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.	1.91023e-27
NZ_CP040440.1\|WP_012480414.1\|2353722_2354664_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.63826e-99

>NZ_CP040440.1|WP_005413602.1|2361395_2362298_+|LysR-family-transcriptional-regulator
MKTTLDELKAFVAVVDSGSITAAAEALELTISATSRTLARLEDKLQTTLLRRTTRRLELTEEGAAFLEYARTILATVDEAEEQMAARRLQPVGRLRVDAATPFMLHVIVPLLEGFRERYPQVELELNSNEGITDLIEKRTDVAFRIGVLRDSTLHARPIGHSRIRVVASPEYLRRQGTPTRVEQLREHDLLGFTQPSSLNEWPLQDADGGPFVIEPAIASSSGETLRQMAVAGLGIACLSDFLTRQDRRDGRLVQLFARQTQEVRQPINAVYYRNTALAARITCFVDHVTQTLGQRPFDE
>NZ_CP040440.1|WP_049396099.1|2360473_2361277_-|2,5-didehydrogluconate-reductase-DkgB
MSVPSFGVGTFRLTGQTVIDSVRNALDVGYRAVDTAQIYGNEAEVGQAIAESGVPRDELFLTTKIWVDNYAADKLLPSLRDSLAKLRTDYVDLLLIHWPAPGNGVELREYMTALAEAKTLGLTRQIGVSNFNIELTRQAIEVVGAGEIATNQIELSPYLQNPALTAFLQDQGITVTSYMTLAYGKVLKDPVLAAIADKHQATVAQVALAWALQLGYSVIPSSTKRENLASNLLAQDLHLDADDMTAIAALDRNGREVDPPGLAPAWD
>NZ_CP040440.1|WP_049396098.1|2359514_2360462_-|TIGR03571-family-LLM-class-oxidoreductase
MGSALARLQAGGFSIGIEAPLDNDWTPLGEQARRAARRLPGEPDLQRHAELARLADRLGFRALWVRDVPVYDPAFGDAAQVFEVFSYLGYLAGITNDILLGTGAVVLPIREPLLTLKSARSVQRLSGDRLLLGVASGDRPVEYPLFGRDFDSRGSRFREQIALLREGAAAHLPQGLDVLPADGPALPLFVAGLAQQQPAWIGQHMDGCLAYPGAPQDHAQRVAAWRAVAGNKPYASFIHLDLVDDADAPLQRWRFGLRGGRNALLAELHAMQGAGVDHIGLQFRRNERPLAETFHEIAEYVLPHFPAHAGATATA
>NZ_CP040440.1|WP_080354166.1|2358556_2359495_-|cyclase-family-protein
MKMKTLAALALATLPLSFQATAEEWYPSAYGANDEIGAANLLTADVVKHAVSLVRTGKTYPLAVPVDKNLPAFRHRSFRLYNVQVGQQAGKSLGPNKFTFNDELVNAWTGVGTQLNGIGHIGIDNVYYNGNKAADFVTVDGVRKLGVEKVPPMVTRGVVLDMTAYYGKAIVPGGTEFTVADIQAVLKKQGLSLRKGDVVLFNTGWLELIGKDDTQFLEVEPGIGMEAAKWLADQGIVAFGGDTWASEVYPNPNGAEEFPINQYMLAKRGIYNLELIDSRALVRDKAWEFLFVLGQPLYVGSTQVNINPVAIR
>NZ_CP040440.1|WP_049396097.1|2358236_2358560_-|adenylate-cyclase
MNTAPALPLFAGRRFRVSYDGLAADNVYSADGRHVQYAIVSGAYAGAQGDAACEWQQISEGVYALSWQEADGATVVHVDDFVGGRSLAWFTATDGSFHRMQGPLAAL
>NZ_CP040440.1|WP_012480410.1|2357732_2358110_-|copper-homeostasis-periplasmic-binding-protein-CopC
MTRSLRRSATLALLLSGLAVAPLALAHPSLVRSTPAADATIAPATEITLQFSEKVMPRATRIELSMDHGRMKMAMPTTAQDLSEDGHTLRARFAKPLPAGSYALQWRAVGQDSHPITGNYRFTVK
>NZ_CP040440.1|WP_012480411.1|2356837_2357722_-|copper-homeostasis-membrane-protein-CopD
MAELSPYALRLALYLVLMLLFGRLLFVRPGLPRSISLTLAVVALILVVIDAVNRLSGVLGIPAADIDPATAHWFLTGTPVGKAGLLRTVAVLAMLPLLASVTPLRGLRRLALLALSATALASLSWNGHAAAGDGFGGTLRLTAGIVHLLAAGAWVGAIAAILQLALRPQGLRLRERTRELWQAAHCFAVPGTIIVALLAMTGTYTYVDLGGSIQTLTGAAHGRWLLLKLALVGGMLGLAALHRWRLVPALAVSIRGGWQPRPLRSLRQSLACESLLALLVLACVAVLGTLDPLA
>NZ_CP040440.1|WP_012480412.1|2356093_2356792_-|heavy-metal-response-regulator-transcription-factor
MKLLIVEDEPKTGNYLRQGLIEAGYVVDLACNGVDGLHLAGSGEYQLVILDVMLPGLDGWNVLSRLREAGWQVPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQAQPQAERIVIADLVVDTLRRRVERGGQRITLSQKEYTLLELLARRRGEVLPRSLIASQVWDMNFDSDTNVIDVAIRRLRAKIDDDFDAKLIVTVRGMGYVLEAPDDGAVHSG
>NZ_CP040440.1|WP_012480413.1|2354729_2356097_-|heavy-metal-sensor-histidine-kinase
MSLRRSIAVRLTLLFAIVATLVLAALGVAIYVSARHDLVAQDFVELENKVALIRDLADNGPASTRAKRLAEALGHHPEIAFHVVDGRGAVLFSTAPALLREHARGQPIDAAPRRHDWILADGRCMHALHLRQTLADGSPLVTLLAIDDDRHADFLQRFRHLLAIAIIGAAVASSLLGGYVVRRTLRPLRTLADEARQITAGRLQRRLSARSAPAELEQLAETLNGMLARLQQDFARLTEFSGDLAHELRTPITNMLTQVQVVLAHPRSNEAYRETLASCAEELQQLAQTVGDLLYLAQAEAPGALPSREPVALDGVVDSLLEFYDLLAEDRKLTLRRDGVASVEGNRLMLHRAIANLLSNALKHAAVGSEVRVRLLEADGVCRVSVHNLGTPIAAEALPRLFDRFYRGERGRHEGAGLGLAITRAIAQAHGGSVSVVSDDTGTVFELVLPGAAAR
>NZ_CP040440.1|WP_012480414.1|2353722_2354664_+|LysR-family-transcriptional-regulator
MDRFTAMRAFVRIVERRSFTRASEDLGLPRATVTDAIKALEQRLGVRLLHRTTRLVVPTPEGEAFYGRCLRLIADMDDAEAAFRDAPPRGPLRIEVHGTLGRHLLFPHLPEFLQRYPEIELDVSEGDRYVDLLREGVDAALRVGTLADSDLAARRLTMLREVTVAAPGYVQAHGLPDTIESLEQGHQMVGYRSTATGQLIPLEFQQAGQLRYVPLQARVRVSGADAFLGAALAGLGIIQAPRYRMDPYIARGQLVELLPETPPTPSPLSLVYPRNRTPSPRLRVFIDWVAGVFEQTGVAGQRPALPTRGARAG
>NZ_CP040440.1|WP_044570295.1|2362577_2363051_-|MerC-domain-containing-protein
MDHIPTTPARALAQPPTSARWHPRFDLAGAWLSMACAAHCIALPLLLAFVPAAMMALRSFQHPGHGAMTLLLMMSRWEWLFALLASSLALASTSAGVHRHGRWRPVRLACAGAILLLSASLYLPLKESLLWHGVATASGGVLLACAHIGNRRALRTR
>NZ_CP040440.1|WP_049396100.1|2363083_2363617_+|DUF2796-domain-containing-protein
MKRSAALFLLLAASAAQAHDIRQHAPHVHGQATVDLALDRQTLEFALQAPGIGILDYERPPANAVEQAALTRATTVLKGGSWVTLPTAAGCRLSGNDAKAEGFDATAAAPPPGQHRHAGFSATLQYHCAKPAALRAIVVRLPVLFPGLHEVIVNSATANGQNRSVLTPDSLRVVLAP
>NZ_CP040440.1|WP_012480404.1|2363613_2364309_+|ATP-binding-cassette-domain-containing-protein
MSAAPVISLEDVQFGYGMQRVLDIPRLWVEQGSSVLLRGISGGGKSTLLGLLAGVLLPGKGRVEVAGQALQDMGGAARDRFRADQLGVIFQQFNLLPFLSVRDNIALGLRFSRLRSARISGPLDAEIARLLQALQLNPELMQRRAGTLSVGQQQRVAAARALIGRPALLLADEPTSALDREAATAFLKLMSAQCQAAGTTVLVVSHDDSLQPLFDRTIALSQINQAGAGHA
>NZ_CP040440.1|WP_049396101.1|2364301_2365555_+|FtsX-like-permease-family-protein
MLELAWASLRSRALSVGLTVLVITLSVVLLLGVERVRTQAHEGFASTVSGTDLIVGARSGPVNLLLYSVFHIGDPTNNVSWQSYQELSALPQVKWAVPLSLGDSWRGYRVVGTSDGYFEHYRYGAGHALAFADGRPFDDLYDVVIGAEVARAQKVGLGDQIVLAHGTGAVTLATHADKPFRVAGILQRTGTPVDSSLLVSLPAIEAIHVDWRSGVQLRSQRVSAEQARHLDLTPTSITAFMLGLNSRIATFSVQRRINEYPDEAMLAILPGVTLQQLWQSLGTAERALQLISAMVVLLGMVSLVALLVSTLQERRREMAILRATGARPGYIAGLLVVEAVATSAVACVLALSLLVVASIAGRGWVLATFGLSITHVWPDGRELAWVAGVLAISAAAGLVPALLAYRSTLADGLSPGG
>NZ_CP040440.1|WP_044570292.1|2365557_2366109_+|DUF3299-domain-containing-protein
MRWMLSLPMVLALVACERPVDTGVQALPPAPVVDRADAADAAEQELDWLQMMPKDELAALERGEGPEVEHNGNRRMPQFGTFRTVDTVLQRPVRLPGYVVPLANAQDGRLTEFLFVPYYGACIHVPPPPPNQIVHVVLPRPIDMPDMYSPFFLAGTLHAERLDDDLAGSAYTMRDAQLRPYEP
>NZ_CP040440.1|WP_049396102.1|2366098_2366719_+|DUF3299-domain-containing-protein
MNRSHLLLALGCLWLAGCTAPGGDAVVVTLQDKPAPSATAEAPIDRWDALRPDEVTYQRPPPQIGLSRGGMDDVGGLIDDTGSGTPPGQEIDHSSPDRAKQFGSSRVVDAVDGRTVDLDGYVVPLGTNDAGLVDELLFVPFYGACIHVPPPPPNQIIHVTLATPIALGDLWDPYRLAGRLQVKRFDADIASASYDAAAATLTVIRN
>NZ_CP040440.1|WP_049396103.1|2366718_2367465_+|hypothetical-protein
MRRRWIMVAGVLLGAVVLLLCWQRQRAPIAPPAVAFPAPTSNASQRIEQRLGDDHAFRNDVLFLLAATLRDRCQPAQAGVLARMANRASLPVLAAVSAVTQQDPSLDRPIYQYIQHSADATQCGQPLQMPLADGRRVAVDIEQYARTFPDSYFDPQRSSEPRDFGGLSLQQRAGNACNSVVYSVLPLGGTDWRCSSLRANARARVRGLCEDELRRQHGDIGGELDAAVGQGMQSAVVSAIAALPEDCR
>NZ_CP040440.1|WP_049396104.1|2367616_2369149_+|MFS-transporter
MALSQPLAGAPALSRARRWALLFTVAAGLLLVTLDNSVLYTALPTLTEELSASAGQALWIINAYPLVMAGLLLGAGTLGDRIGHRRMFLIGLVVFGVASLAAAFADTAAQLIAARAFLAVGAAAMMPATLALIGLSFHEERERNIAIAIWGSVAIVGAALGPIIGGWLLQHFWWGSVFLINVPVVVVAFVATLLLAPEGQRDTSRPWDLVSSVLALAALSGLVLAIKSLIATPPSYALGAGALLLAVISGAAFARRQQQLPYPLLDFVIFRNPAFLAGTLSAVFTLFAMAGLQLVTTQRFQLVAGFTPLQAGLLVSVAAMGSLPSALLGGSILHRVGLRPLICGGLAAGALGVGVVAFGFPHGLGWVVAGMAITGFGMGSAISVASTAILNNVPAHRAGMASSVEEVSYEFGGLLAVAMLGSLSAAMYSAFLPVSADMPVLARGGFTQALHVARESGQGEWFALAAAAYDRGYQIVLLVITVVLALGATILARLLRGRVGSREGAADRVK
>NZ_CP040440.1|WP_049396105.1|2369153_2369711_+|TetR/AcrR-family-transcriptional-regulator
MRTSKRDRILDAAVNVINRDGVRAVTFESVAAEAKLTRGGLLYHFPSREALLRGIDEHLVQAWETSMETLLGKRADEATALERYQTFVRVSAQSATRAELMFMLESADPDADERPWGPAVRRWAPSAPEAGNVDPTTLDSFVARLAADGLWIYEAMYEGQLDEGVRARVAERIAGLLAKSDGTSS
>NZ_CP040440.1|WP_049396106.1|2369880_2370777_-|AraC-family-transcriptional-regulator
MNVSVDTSSPDRLSSLLERFRVQAALFHSGPLCGRHVFEPQPGRAFLHILRQGEMEVRHPGGDIALPRLKIDTPSLLLYPQPLHHVFFNAPLDGPNFTCATLDFDGGARNPIVQSLPPVMVVPLAAIGELDDTLHLLFAEADRQRCGSRLLTNRLFEVALIQILRWVVDHPDAAGVSHGLMRGLSDARLARTLVAMHQAPQDEWTLPRMAATAGMSRSAFAAVFKEVMQATPAAYLLDWRLSLACAQLRAGVAVKQVAIEVGFADTASLSKAFRKRLGASPRAWLAANAAQAGQTREG

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Crispr_ID: NZ_CP040440_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040440_6

3606597-3606700

Orphan

Consensus_repeat	Method
CGGTAGTGCCGGCCGCTGGCCGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040440_6

>merge|NZ_CP040440|6|3606597-3606700|CRISPRCasFinder
CGGTAGTGCCGGCCGCTGGCCGGCAACGCCAACCAAGGTTGGTATCTACCAGAGCCGGGCCATGCATGTGAACGCAGGCGGTAGTGCCGGCCGCTGGCCGGCAA

>NZ_CP040440|6|5|3606597-3606700|CRISPRCasFinder
CGGTAGTGCCGGCCGCTGGCCGGCAA	CGCCAACCAAGGTTGGTATCTACCAGAGCCGGGCCATGCATGTGAACGCAGG
CGGTAGTGCCGGCCGCTGGCCGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040440.1\|WP_049396059.1\|3600324_3602451_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP040440.1\|WP_049396060.1\|3602683_3603646_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|341130
NZ_CP040440.1\|WP_024956942.1\|3598011_3598500_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237855
NZ_CP040440.1\|WP_049396063.1\|3612345_3612921_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225104
NZ_CP040440.1\|WP_005410639.1\|3605043_3606336_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP040440.1\|WP_049396062.1\|3604263_3604926_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_005414170.1\|3606735_3606921_-\|DUF2065-family-protein	unknown	unknown	gnl\|CDD\|225782
NZ_CP040440.1\|WP_005414169.1\|3606988_3607852_-\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803
NZ_CP040440.1\|WP_005414168.1\|3607848_3608982_-\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|130988
NZ_CP040440.1\|WP_049396065.1\|3615439_3620347_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP040440.1\|WP_005410646.1\|3611833_3612316_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239311
NZ_CP040440.1\|WP_049396057.1\|3598509_3599250_-\|BioH-protein	unknown	unknown	gnl\|CDD\|378820
NZ_CP040440.1\|WP_012481001.1\|3609135_3610131_+\|YhdH/YhfP-family-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176183
NZ_CP040440.1\|WP_005410645.1\|3610679_3611573_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP040440.1\|WP_049396058.1\|3599390_3599930_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_005414177.1\|3595898_3597989_+\|catalase	unknown	unknown	gnl\|CDD\|236886
NZ_CP040440.1\|WP_049396064.1\|3612993_3615375_-\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|227289
NZ_CP040440.1\|WP_049396061.1\|3603650_3604328_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP040440.1\|WP_044570698.1\|3599944_3600235_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_005410644.1\|3610219_3610591_+\|response-regulator	unknown	unknown	gnl\|CDD\|381093

Protein	Function_ID	Function_description	E-value
NZ_CP040440.1\|WP_049396059.1\|3600324_3602451_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.74043e-79
NZ_CP040440.1\|WP_049396060.1\|3602683_3603646_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	8.78932e-27
NZ_CP040440.1\|WP_024956942.1\|3598011_3598500_+\|hypothetical-protein	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	8.56419e-14
NZ_CP040440.1\|WP_049396063.1\|3612345_3612921_+\|hypothetical-protein	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	1.80221e-34
NZ_CP040440.1\|WP_005410639.1\|3605043_3606336_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP040440.1\|WP_005414170.1\|3606735_3606921_-\|DUF2065-family-protein	gnl\|CDD\|225782	COG3242, COG3242, Uncharacterized protein conserved in bacteria [Function unknown].	6.77277e-12
NZ_CP040440.1\|WP_005414169.1\|3606988_3607852_-\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	3.90151e-107
NZ_CP040440.1\|WP_005410646.1\|3611833_3612316_+\|peroxiredoxin	gnl\|CDD\|239311	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs.	3.28546e-78
NZ_CP040440.1\|WP_012481001.1\|3609135_3610131_+\|YhdH/YhfP-family-quinone-oxidoreductase	gnl\|CDD\|176183	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	2.80982e-163
NZ_CP040440.1\|WP_049396064.1\|3612993_3615375_-\|penicillin-binding-protein-1C	gnl\|CDD\|227289	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane].	0
NZ_CP040440.1\|WP_005410645.1\|3610679_3611573_-\|DnaJ-domain-containing-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	1.98574e-74
NZ_CP040440.1\|WP_005414177.1\|3595898_3597989_+\|catalase	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_CP040440.1\|WP_049396065.1\|3615439_3620347_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP040440.1\|WP_049396061.1\|3603650_3604328_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	4.33195e-25
NZ_CP040440.1\|WP_005414168.1\|3607848_3608982_-\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|130988	TIGR01933, Protein_HflK, HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (SS 8/27/03].	7.7381e-117
NZ_CP040440.1\|WP_049396057.1\|3598509_3599250_-\|BioH-protein	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	3.45887e-08
NZ_CP040440.1\|WP_005410644.1\|3610219_3610591_+\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.3106e-35

>NZ_CP040440.1|WP_005410639.1|3605043_3606336_-|adenylosuccinate-synthase
MGQSVVVLGAQWGDEGKGKIVDLLTEEIGAVVRFQGGHNAGHTLVINGKKTVLHLIPSGILRDDALCLIGNGVVISPAALQKEIAELEASGVEVRSRLKISPAAPLIMPYHIALDQARERAAGGKAIGTTGRGIGPAYEDKVARRGIRIADLHYPKQLEELLRTALDYHNFVLTKYLNTDAVDFQKTFDEALAFGEYVQPMKSDVAGILHDLRKQGKRVLFEGAQGALLDIDHGTYPYVTSSNTTVGGALAGSGVGADSIDYVLGIAKAYATRVGGGPFPTELDDEVGQGIRDRGAEYGASTGRPRRCGWMDIVALKRAVAINGISGLCITKLDVLDGMEKLKVCIAYEYNGKRTEYAPLDAQGWEECTPVYLEFPGWSENTHGITNWDDLPPAARAYLRSLEELAGCPISIVSTGPDRDHTMVLQDPFA
>NZ_CP040440.1|WP_049396062.1|3604263_3604926_-|hypothetical-protein
MKGETVVRITLWVLWSLWGIACLVLVLGAAANTLASRTQTVPLVLSPGATAQITVYRLIDDQLRLRLRYAADGTEADPEVLLRIETPTDHGDFRAGERSGVAGQGINRGLASVESSGLMASYFGYGRGDALPRGRSWVRLTVLEVDPALADRAATVELQPPLDLLKLTDLDYVWLWPFFFWKVAALLLLIPGAALAVFTFTLRRWQHRASKQADSAVDTD
>NZ_CP040440.1|WP_049396061.1|3603650_3604328_+|M23-family-metallopeptidase
MRLSQLIVLGVLLGLGAGWWLRRDAGEPVAASLPEAQPAAAVAPAKGSVAPLGTAPAPVATAPSAARTADAPSGLLLPVQGVLASQLRDTFTDARSEGRVHDAIDIMADAGTPVLAVADGTVEKLFDSERGGLTIYQFEPSGRWCYYYAHLQRYADGLAEKQVIKRGDVLGYVGSTGNASAEAPHLHFEVHVLGPEKQWWKGESINPYPLLNPPASKPGAASAAK
>NZ_CP040440.1|WP_049396060.1|3602683_3603646_+|L,D-transpeptidase-family-protein
MPLPVYRSTLLALSLLASPAFAQAPPPGLPAPIAEKAGPDTAARSALHAQVLLDRANFSPGQIDGEVGSNQRRAVSGFQAAHGLAVTGELDDATWQALQADTVTPLASYMLTSEDVAGPFQAVPKGPAAQAKLKSLGFNNVEESLGERFHASPELLKLLNPGVDLSKAGNRIQVPNVAPSPLPKAAKVVVDKSDSSLQLLDAQGKVIAQVPVSSGSQHDPLPIGEWKILGVYRDPPFHYNPKLFWDARKGEKKATLPPGPNNPVGRVWIDLSKPHYGLHGTPEPGHVGKTESHGCVRMTNWDALRVADAVDTSVPVVMQE
>NZ_CP040440.1|WP_049396059.1|3600324_3602451_-|methyl-accepting-chemotaxis-protein
MNYLRNVRVAWRLGLGFGLLLLLVAAVVATGATASVVQKRAMQQVVDVSVAKVRLLSQMLDANNQMMVVRREMLIRQGDDRGHDEQRIADLVKRYEASWTAYQALPSDAEGKAIAETIAAKRAIARPLNKQTSELMEQGDYPGAVALTLGPVQEAANGWNKALSDGVDFEEKESREAAAEAIRLGERSLLQLLVLGGVALLVGIGASVMIGRSLTGPLARAVNLAERLSRGQLDQEFRLGGRDELTQLGEAMASVRQSVQAAIGAQLQMAEQHEAGAIRYRMDASAFPGDFGRMVQATNSLVESHVQVELLMAEVMQRYAIGDLSRDLPDYPGEKGTLTRTLAAVKQSLMAINAQIDALARAARAGDFSMRGDAAAFQFQFKAMVEHLNGMMASSQASIADVSDVLRAISHGDLTARMDGEYDGVFARMRDDANTTTAQLTGIVRGIQVAADSINNAAQELAAGNNDLSRRTEQQAANLEEAAASMEELTSTVRQNAELARQADSEAHAAGAAVRETEQAMAQMASVMGEIDQSSARISEISTVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRAGVAAKEIKELIEDAAAKVKSGLAVTVESEAAIARVAQASSRTTQLMSDIAAASKEQAAGIEQVNQVVVQMDQVTQQNAALVEEATAASRALEEQAHALTTSVAVFKVEQGARMPIVPAQAA
>NZ_CP040440.1|WP_044570698.1|3599944_3600235_+|hypothetical-protein
MKMRRLLSWTGLALCVVYLLLTAWLVHGAQSDADPKGAYILMSLPITLQSAALDAIGAGSLLYGKPWSTAYAVLVPPTLLLLYAAGWLIERAAGGR
>NZ_CP040440.1|WP_049396058.1|3599390_3599930_+|hypothetical-protein
MRWTYALAMMAMMLPLNSSANDGWINGAGKAMPETDAMKSSGGFAASLLVTSDADWRAKWETPPESTPGFTQADEVHPGGELFLLTFLSNPQLDENRVPKVHCDLRMLRPDGSTSIDERDVPCFTAALPGPPTLLYMTNLHLKFVAEASDPKGTWTAQVVVRDLLRNVSLPLQAHFDVR
>NZ_CP040440.1|WP_049396057.1|3598509_3599250_-|BioH-protein
MGIGREEKPGCDSASPTPQHVLMLPGLDGSGRLSIPFLSALQAHGLTTQAITLPAQGGQDHATLAQRLWSQLPGHPFILLAESFSGPLAVELATRQPAGLRGLVLAATFARRPVPLPAASAALLTPAWPLPPVALLARLLLGRWRTREHLSMLRDALARIPAATLRQRAAATLRVDIRALLPAIDVPTLCLHACHDRLLWPPSVAELQALLPNARHVSLEGPHLLLQARADAAAAEVAAWMRTLSP
>NZ_CP040440.1|WP_024956942.1|3598011_3598500_+|hypothetical-protein
MPRGDKSAYSDKQKRQAEHIEESERERGASEGTAERIAWATVNKQDGGGKRSGSARKGTKKATSKKAAKKAPARKSGTKKATTKATAAKKAPAKKTTARKAAKKAPARKTATKKTAKKTAAKKAGTAASRSAAAKKAAKTRAAKKTVRKVAAKKAARTRARG
>NZ_CP040440.1|WP_005414177.1|3595898_3597989_+|catalase
MAASKPTGKRATTHAENHHRGNGDELHQQAGGSHPAMTTDQGIPVADNQNSLRQGPRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFELTRSLKAHTRARILTEVGVKTPVFTRFSTVAGGAGSVDTPRDVRGFAVKFYTREGNWDLVGNNIPVFFIQDAMKFPDLVHAVKMEPDRAFPQAASAHDTFWDFISLMPESMHMIMWAMSDRAIPRSLRMIEGFGVHSFRLLNEAGESTFVKFHWRPKLGIQSTVWDEALKLQSADNDFHRRDLFEAIQRGDFPEWELAVQLFTEEDADAFPFDHLDPTKIIPESLVPLQVIGRMVLDRWPDNFFAETEQVAFCPANVPPGIDFSNDPLLQGRLFSYLDTQLLRLGGPNFHQIPVNAPKCPFANHQRDGHMQMQVPKGRVAYDPSSLQEDTPRETPAGFRSHASADDGRKGRTRAESFADHYSQARMFFRSLEKPEQAHLASALVFELSKVETLKVRVRTVSHLRNIDDSLAQRVADGLALPALPDPAPTATPVRDMPPAPEVRVIGRNKPTLQGRCIGILFDEGSDARIIASLSKAARKAGADVKLVAPRVGGATLSDGALQAADGQLAGTPSAVFDAVAVVLSPEAAKALSKESAAIEFVSQAWAHLKAIASDAGGQTLLKAARVGNDAGIVEAEDAKAFLAAAATRQWAREPKLRLLA
>NZ_CP040440.1|WP_005414170.1|3606735_3606921_-|DUF2065-family-protein
MKDLFAAVCLVAVLEGLFLFVAPFAWKRMAERLLDLPSPALRSFGGLVLLAGLSLLWWVRH
>NZ_CP040440.1|WP_005414169.1|3606988_3607852_-|protease-modulator-HflC
MKSPIWIAVIVAVVLGLLGSVYVVREDQTAMVLNLGKVVRSDIKPGLHFKVPVVETVKVFDRRFQVLDTAPARYFTAEQKDVSVDFFAIGYISNVGDYFRATGGDPRIANARLAPIITDSLRNQINSRTLQQLVSGDRSELIAEQLKGINEAVAGLGMQMIDLRIKQVDLPTDSQVINDVYERMRAQRKQEAAKLRAEGEEQSLTIRAQADRDSTVLIAEAERDAQRLRGEGDAEAARIYGKAGSADPSFYAFYRSLEAYRGSMTDGNGVIVLDKNDPFLQYLKNDR
>NZ_CP040440.1|WP_005414168.1|3607848_3608982_-|FtsH-protease-activity-modulator-HflK
MAWNTPGGNKGGQGPEDNRRGPFGSRGGGNGGGWGGLPGPLKDLFDGGIVRWVVAAVVLLVLFSSFQLIGEQQRGVVLRFGQFSRILQPGPNFKLPWPIESVTKVNATEIKTFSIQVPVLTRDENIVNVSLNVQYRIDDPQQYLFGTVDANQVLEQSAQSAVREEVGRADLNAVLNNRGPLAVAAEERLQALLKAFKTGLTVTGLTLQDARPPEEVKPAFDEVNGAQQVKERLINEAQAYAAKVVPEARGQASRARTTAEGYKQAVVSKAEGDAQRFSLLQAQYKDAPEVTRKRLWLETVQQVLSENRKVIGGDGRQLIYVPMTGDTRPSTSAPAAVANPDVVMPSLPGAATEASRDPGRPVGRPTGRPSGREEGSR
>NZ_CP040440.1|WP_012481001.1|3609135_3610131_+|YhdH/YhfP-family-quinone-oxidoreductase
MAPTTPFTAFRIENDDAGYRSGLVRLGVDDLNPGQVLIRAHWSSVNYKDALAGTGKGKILRRFPLVGGIDVAGTVVASTDPDWREGDAVLATGCGLSETRDGGYSQYVRLESRAVIAQPAGLTPREAMVLGTAGFTAALALLRMQDNRQTPELGPLAVTGASGGVGALALSIFSRAGYSVHAVSGKPDQAGFLRSIGATEVLPRDALADTGALQSARFGGGLDNAGGDMLASLLTQTVPYGSVVSAGLAASPTLDMTVMPFILRGVSLLGVSSANAPRGLREEVWSRLGSDWKPQHLDRICTAEVGLDGLPAVFERMLAGGSLGRTVVRID
>NZ_CP040440.1|WP_005410644.1|3610219_3610591_+|response-regulator
MARILIVDDSPSQLLGIQRIVEKLGHQILTATDGAAGVETAKAELPDLVLMDVVMPNLNGFQATRTLARDEATRHIPVILVTTKDQDTDRMWGMRQGAKAYITKPFSEDELSEVLERVFAGQG
>NZ_CP040440.1|WP_005410645.1|3610679_3611573_-|DnaJ-domain-containing-protein
MEFKDYYATLGVEPSAGEAEIKTAYRRLARKYHPDVSKEAGAEDKFKAVNEAYEALRDPEKRAAYDQLRAQGYRPGEEFNVPPNYGGAGGFNFEEVFGGGGPNGGFSDFFESLFARQRGGAGAGAGPGFSSQGHAPNRDTRAKLSVPLEAAYSGDSLRITVNGKQLDVRVPKGIRPGQVIRLAGQGNHGGNLLLEVEYAAHPQFEVDGRNILYTLPLTPWQAALGTSISVPTLGGAVELKIPADSDAGRKLRLRGRGLPGNPDGDQIVEIEIVAPAATDEAQKKAYRNLAKAFGETI
>NZ_CP040440.1|WP_005410646.1|3611833_3612316_+|peroxiredoxin
MTIHVGDRIPEVTLKRIREGIETLDTHSLFDARKVVLFAVPGAFTPTCSARHLPGYVEKFEAFRQRGIDVYCMAVNDPFVMKAWAADQSVPDGLLMLSDGNAELTRALGLELDASASGMGIRSRRFALYVDDGVVREAWVEQPGQFEVSSAEYVLEHLPT
>NZ_CP040440.1|WP_049396063.1|3612345_3612921_+|hypothetical-protein
MSSKPAKASKPTANVPGISDRATLRERARRNLEDGAITDSYSADREVVIKLLNDALATEYVCVLRYYRHYFMAKGMLADAVKAEFLEHAQQEQAHAGKLAERIVQLGGEPDLNPDTLTARSHAEYKEGSDLRDMVRENLVAERIAIDSYREMINFIGDRDTTTKRILEEILAQEEEHADEFADLLDGWIGE
>NZ_CP040440.1|WP_049396064.1|3612993_3615375_-|penicillin-binding-protein-1C
MTNTMTTRRAALRRRLQPLWPWLRWGTAATLALLLVLDFAFPPPLPKQRDTSTLVVAADGTPLRAFADAEGVWRYPASTDSVSPLYLQALLTYEDRWFWRHPGINPLAILRASGQLLRGGRIVSGGSTLTMQVARILDPHTRTPWGKLKQMLRAVQLEVHLSKQQILALYLERAPYGGTIEGVEAASWAYLGKPAAQLSHAEAALLAVLPQAPSRLRPDRHPEAAQKARDKVLSRMAELGAWTAEEVEDARIENVVARSLRPPLHAALLAQRLHSAHPGQARIQSSIDIGLQRTLEERVASYFSTLPERTSAALLVVDNQTLQARAYVGTLAFGDRQRLGHVDMVQAWRSPGSTLKPFLYAMALDDGLIHSESLLVDAPQSFGSYRPGNFDMAFNGPIGASSALRLSLNVPSVDLLQRVGPARFAARLSHSGIQLRFPPGSTPNLSLILGGTGARLEDLVGAFAALNRNGIAGRVRYTDDEPMIERRLASPGASWIVREMLESNPRPGYSVGTFDVGGRPRVAWKTGTSYGYRDAWAIGSTRHYTVGVWVGRPDGTPLPGQYGAVTALPLMFEVVDSLPRQRGDSAAAPMPASVSQEDICWPTGERAEGLPAALCQRLMPAYLLEGAAPPTFPEREARRWQPGRQRYLADARTGLRVSADCRLPHEEVAREIARWPALLSPWLSKATREASQLPALSPDCRDDGREASVALHIDGLNDGATLARAPNSEHGVRLQLRALGSEQAVDWLLDGRWIAQTRGAQLMQREFAEPGAHTLTALAADGAWTQVRFNVLR
>NZ_CP040440.1|WP_049396065.1|3615439_3620347_-|alpha-2-macroglobulin-family-protein
MSGPARRKRWGWAAAVLAGGLLLGLAGCRNDSGQLPKASGEAITTKAEQVKEFTLLRAYPDQKNDGLSLALEFSRPLVGTQDFDKLVRFEEKVGTDDSSWTLSDDGLTLRYPFVEAGKEFSLVVSPDLLAADGSRLGKELKQKVFSGELKPVVGFASQGSVLPAKDSRGLPVVSVNVPEVDVEFLRVREKDLPTFFSQYQRGGRRGSWELSSDYERSPINKLAEPVYVNRFILGGKKNERVLTYLPTQDIKELQEPGLYFALLKRTGDYEGEFDTAFFSVSDIGLHTRAYKDKLFVHTAGLKDGAPLKGIDLRVLDAKGEVVLKGSTDGNGNALLNYTLDATHVLVASTVKDTSFLPFNQPALDLSEFAVAGRDNAWFDVYAWSGRDLYRPGETVRLSALLRDNDGKPVKAQPVFLRLKQPDGKTFRETRLQPGDQGYINFEQVIPAEAPTGRWQVEFRTDPASKEAIQGMTLRIEEFLPERMKLDLDSAQKTLKPGEDLRLQANGAYLYGAPADGNRFTARMAVAAEQKPVEGLPGYFFGDPTLQLPREAKDVIDTTLPGNGQLREDVALPEEAAKAKAPIAVVLSGSLYETGGRTVTRTLKRVMWPANALVGVRPLFNPEDGADSNGNARFELMRVDAAGTPQPAKGLKITLVRELRDYHWTFNDNRWDYDFTRRFENKETRIVDAGSSAVAFDFPVEWGEYRVDVFDPSTGLTSRYPFRAGWSWGDDNRGLDARPDKIKLGLDKTGYKAGDTLEVTVTPPHAGKGILMVETDRMLYVQDIDAKPGSTFKIPVTADWERHDVYITALVFRGGSAPSKITPARAVGVVHVPMDRKGRTVAVGLAAPKQMRPEQDLPVTVSAPQLAGKMAHVTVSAVDVGILNITRFPVPDAGAHFFAQRRLGIDAYDIYSRVIESFDGGAGKLKFGGDMALQALPQAKRPTARVQTVDLFSGPVQLDAKGIARIRLKVPDFNGTLRVSALVYSDDQYGKRDVETVVRAPILAEASMPRVLAPGDRSTVTLDVQNFTGKPGQFNVKVESEGPLNLGEGSRSVQLNADAKTTLSFPLSAREGHSVAKVRVRVDGNGFKADRRYDLPVRAAWPQVLRSQVRTLDPLAAVSLDNSLTDGLMAESVNARLLVSPLPPIPFASALQGALNYPYGCAEQTTSKGYAALILDQATSSMLGADGLDAKTRRERMEGAFGRLASMQVANGNFSMWGDDGYVNPWLTPYITEFLLDAKDAGFAVPDNVLQKALNRLSEDLLSGGNQFYGQDDREKLKFANQAYSGYVLARVNRAPLGTLRTLYDNERSKAVGGLSLVHLGVALSLQGDAKRGQAALAAAFAKSSSERPSYFGDYGSAIRDDALMIALTHENKLAKPAWDARAVDLGRGLDARRNAGWMWLSTQEQVAIARLGKALAANQKALVAGELVIGGNTEAIGERKLFGRNFSANELASGVRFTPQGQPPMFASIDVAGIPRSAPAPDNSVLGVERSYYGTDGKPWSPRPLKEGEALIVRVTVTADTTMPDALLTDLLPAGLEIENFNLGDAKQWADVVVDGITISDRGEAADTKHEEFRDDRYVAALKLSRGSKANVFYLVRAVTPGTYSVPPPLVEDMYRPQLRGVGRSNPTTITVVQP

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Crispr_ID: NZ_CP040440_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040440_7

3877496-3877609

Orphan

Consensus_repeat	Method
TTGGGTAGGTGCGGACCGTTGGTCCGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040440_7

>merge|NZ_CP040440|7|3877496-3877609|CRISPRCasFinder
TTGGGTAGGTGCGGACCGTTGGTCCGCACGACACGGTAGTGCCGGCCGCTGGCCGGCAACTTCGTGATCCGGGTGCGGATCTGCTTTGGGTGGGTGCGGACCGTTGGTCCGCAC

>NZ_CP040440|7|6|3877496-3877609|CRISPRCasFinder
TTGGGTAGGTGCGGACCGTTGGTCCGCAC	GACACGGTAGTGCCGGCCGCTGGCCGGCAACTTCGTGATCCGGGTGCGGATCTGCT
TTGGGTGGGTGCGGACCGTTGGTCCGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040440.1\|WP_049395386.1\|3873462_3874320_-\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|377965
NZ_CP040440.1\|WP_012481079.1\|3863984_3864785_+\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|226236
NZ_CP040440.1\|WP_024956778.1\|3884553_3885441_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513
NZ_CP040440.1\|WP_012481088.1\|3878526_3880308_+\|glycoside-hydrolase-family-15-protein	unknown	unknown	gnl\|CDD\|225922
NZ_CP040440.1\|WP_049395383.1\|3881741_3882179_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP040440.1\|WP_049395428.1\|3868615_3869326_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|373097
NZ_CP040440.1\|WP_049395427.1\|3867624_3868446_-\|DUF3014-domain-containing-protein	unknown	unknown	gnl\|CDD\|378600
NZ_CP040440.1\|WP_049395425.1\|3862554_3863844_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236724
NZ_CP040440.1\|WP_012481087.1\|3877726_3878485_+\|trehalose-phosphatase	unknown	unknown	gnl\|CDD\|319767
NZ_CP040440.1\|WP_012481089.1\|3880304_3881669_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	unknown	unknown	gnl\|CDD\|274112
NZ_CP040440.1\|WP_049395430.1\|3869405_3871010_-\|membrane-protein	unknown	unknown	gnl\|CDD\|225161
NZ_CP040440.1\|WP_044570773.1\|3885631_3886834_+\|lipase	unknown	unknown	gnl\|CDD\|367570
NZ_CP040440.1\|WP_049395384.1\|3875054_3877490_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP040440.1\|WP_049395385.1\|3871614_3873333_-\|pyruvate-oxidase	unknown	unknown	gnl\|CDD\|181661
NZ_CP040440.1\|WP_049397002.1\|3887321_3888956_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP040440.1\|WP_012481080.1\|3864857_3867443_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP040440.1\|WP_080354139.1\|3883450_3884440_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020
NZ_CP040440.1\|WP_080101847.1\|3882153_3882660_-\|DUF4166-domain-containing-protein	unknown	unknown	gnl\|CDD\|379359
NZ_CP040440.1\|WP_049395382.1\|3882680_3883451_-\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|182677
NZ_CP040440.1\|WP_010481551.1\|3874356_3874839_-\|DUF3574-domain-containing-protein	unknown	unknown	gnl\|CDD\|371896

Protein	Function_ID	Function_description	E-value
NZ_CP040440.1\|WP_049395386.1\|3873462_3874320_-\|SH3-domain-containing-protein	gnl\|CDD\|377965	pfam08239, SH3_3, Bacterial SH3 domain.	0.00432409
NZ_CP040440.1\|WP_012481079.1\|3863984_3864785_+\|MipA/OmpV-family-protein	gnl\|CDD\|226236	COG3713, OmpV, Outer membrane protein V [Cell envelope biogenesis, outer membrane].	2.79682e-39
NZ_CP040440.1\|WP_024956778.1\|3884553_3885441_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	2.53346e-90
NZ_CP040440.1\|WP_012481088.1\|3878526_3880308_+\|glycoside-hydrolase-family-15-protein	gnl\|CDD\|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	2.31122e-84
NZ_CP040440.1\|WP_049395383.1\|3881741_3882179_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.82717e-50
NZ_CP040440.1\|WP_049395428.1\|3868615_3869326_+\|glutathione-S-transferase	gnl\|CDD\|373097	pfam14497, GST_C_3, Glutathione S-transferase, C-terminal domain. This domain is closely related to pfam00043.	6.30633e-30
NZ_CP040440.1\|WP_049395427.1\|3867624_3868446_-\|DUF3014-domain-containing-protein	gnl\|CDD\|378600	pfam11219, DUF3014, Protein of unknown function (DUF3014). This family of proteins with unknown function appears to be restricted to Proteobacteria.	1.48927e-55
NZ_CP040440.1\|WP_049395425.1\|3862554_3863844_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	9.68862e-71
NZ_CP040440.1\|WP_012481087.1\|3877726_3878485_+\|trehalose-phosphatase	gnl\|CDD\|319767	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2. Trehalose biosynthesis in bacteria is known through three pathways - OtsAB, TreYZ and TreS. The OtsAB pathway, also known as the trehalose 6-phosphate synthase (TSP)/ Trehalose-6-phosphate phosphatase (TPP) pathway, is the most common route known to be involved in the stress response of Escherichia coli. It involves converting glucose-6-phosphate and UDP-glucose to form trehalose-6-phosphate (T6P), catalyzed by TPS, the product of the otsA gene, this step is followed by the dephosphorylation of T6P to yield trehalose and inorganic phosphate, catalyzed by a specific TPP, the product of otsB gene. This OtsAB (or TSP/TPP) pathway, is also the most common route known to be involved in the stress response of yeast In Saccharomyces cerevisiae, the corresponding enzymes, TPS1p and TPS2p, form a multimeric synthase complex together with additional regulatory subunits encoded by Tsl1 and Tps3. Trehalose is a common disaccharide accumulated by organisms as a reservation of carbohydrate and in response to unfavorable growth conditions. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.07747e-65
NZ_CP040440.1\|WP_012481089.1\|3880304_3881669_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	gnl\|CDD\|274112	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsible for synthesis of only trace amounts of trehalose while the majority is synthesized by the TreYZ pathway; the significance of OtsA in this species is unclear (see Wolf, et al., ). [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP040440.1\|WP_049395430.1\|3869405_3871010_-\|membrane-protein	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.66668e-07
NZ_CP040440.1\|WP_044570773.1\|3885631_3886834_+\|lipase	gnl\|CDD\|367570	pfam03583, LIP, Secretory lipase. These lipases are expressed and secreted during the infection cycle of these pathogens. In particular, C. albicans has a large number of different lipases, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of C. albicans in human tissue.	1.14845e-06
NZ_CP040440.1\|WP_049395384.1\|3875054_3877490_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	6.80941e-63
NZ_CP040440.1\|WP_049395385.1\|3871614_3873333_-\|pyruvate-oxidase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP040440.1\|WP_049397002.1\|3887321_3888956_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP040440.1\|WP_012481080.1\|3864857_3867443_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP040440.1\|WP_080354139.1\|3883450_3884440_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	1.81435e-147
NZ_CP040440.1\|WP_080101847.1\|3882153_3882660_-\|DUF4166-domain-containing-protein	gnl\|CDD\|379359	pfam13761, DUF4166, Domain of unknown function (DUF4166). This domain is often found at the C-terminus of proteins containing pfam03435.	6.87157e-23
NZ_CP040440.1\|WP_049395382.1\|3882680_3883451_-\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	1.05799e-87
NZ_CP040440.1\|WP_010481551.1\|3874356_3874839_-\|DUF3574-domain-containing-protein	gnl\|CDD\|371896	pfam12098, DUF3574, Protein of unknown function (DUF3574). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.	3.15793e-45

>NZ_CP040440.1|WP_049395384.1|3875054_3877490_+|TonB-dependent-receptor
MSVRLPASPLGLAIALALSSAAVPALAQDATNLDTVIVTGTRAADRTVLESTSPVDVLTAEDIRKAGVVNGELGSALQALLPSFNFPRQSNSGGADHVRAAQLRGLSPDQVLVLVNGKRRHHTALVNTDSKIGKGTTPVDFNSIPVSAIKRIEVLRDGAGALYGSDAVAGVINVILDNGGDGGEIEASYGANHTDLKPIGRTLTDGQTGNISAKVGTSLGEDGGFLRVGLEYKHRNGTNRAGFDQIPPWDQTPGNLALQGKRNYVLGDGKSKDINLWLNTEIPVGQTSTFYAFGTFNQRDTEGANYFRYPDGDANWKQVYPNGYRPISEGENRDVQAVAGVRGQWGEWSYDGSLDYGQNDFTYRLRDSLNASLGPTSPTRFKTADYEYAQTVGNLDLSRVFTQSDSISHTLGLGVEARHERYQTRPGDPASYAAGPYTDRPTGSQAGGGLTPQDAATLSRDVASAYASLSSQFGEKFSTDLAARYEHNDDFGGELTGKLGLRYEFTPAFALRGAISNNFRAPSLAQIGYESTSTGYNAGGQLVQGRLLSVNNPIARGLGAQNLKPEKSINTSLGFTSRIGEHFDLSLDFFQIDIDDRIALSESITGDALTDYVAANYGVSGLQSASFFVNAADTRTRGAELVSNWRQSLGDGQLLLTGTYAYTKTTLKNVLATPAQLRALNPDYVLFGIEETNTLTDATPRTRGSFSAAWSNDHWSLSTRVNRYGSATRVFNFGDGYIPRQTYQAEWQLDAEVEYRITPRWSVAIGGQNLTDNYPDRSNSDIHYFGNLPYDVLSPIGSNGAYYYGRVRYTF
>NZ_CP040440.1|WP_010481551.1|3874356_3874839_-|DUF3574-domain-containing-protein
MKHLGLVFAVLLATSGCASLSSQAPSAYATATTAELKGDAARPSAGHGWVRSELYFGVGEEQGAGNRPQADTISEAQWRTFLDKEVTPRFPDGLTVFDAYGQWLFRGDAAPNRLRTKVLVVLHEDTPQRRADIEAIRLAWKQQTKHQSVLWSRQPVEVSF
>NZ_CP040440.1|WP_049395386.1|3873462_3874320_-|SH3-domain-containing-protein
MNYRECVLGLVLAGVLAPSAQASGDDGETLRFQVAAHVQAHADPQQDGSIAVQLSPSGKRQTLEGAADADGSSRWSLEDVDFDGYPELVARASVGMVNEAVTVYRFDPASAGFRALQADTHGKDSCGDLMGLSVDAATRTLTSSCRSGPMWYTDQYRFAGATLHLYRSESVLMLGDTLNAALQWEQTDEQGPLAVWRTYDPAGRVLESAIADGLGAPPDGPLQGQQATVVPARLFLFDRPGASSTKRYLVQGDRVELLDEQDGWVKLRYRNPKQGAVEGWINVND
>NZ_CP040440.1|WP_049395385.1|3871614_3873333_-|pyruvate-oxidase
MSKRVAEIVVDALQQAGVRRCYGIVGDTLNHVTDAMHGSEIAWVHVRHEEVAAFAAGADSLVSGELTACAGSCGPGSLHFINGVFESNRNRAPMVLIASQVVTSELGMEFPQEVDFKAVYASCSVFCEQVHSAEQARRVVTLACQAAISRRGVAVVILPADISQAEVKHDVPFSVHYTQPVLRPSDAELQRIAELLGQGKRIGIYAGAGCQGAHAQLLELARRLQAPIAHTSRAKDFVEPDNPYNMGMTGIFGIESGFHTLMECDTLLLLGADFAWGQFYPDKATIIQVDRDGSHLGRRHPVNLGVVGDIAPTLDALLPMLPPREDSSFLDECIGRRDKALKKREQEEQPGEGELIHPQHLTALLSKYASDDALFTADGGSPMVWVLRHIRVNGRRRTLTSLLHGTMANAMPQALGLQKAFPGRQVISLSGDGGLAMLLGDLLTAVQENLPIKVVVFNNGSLNFVELEQKVEGLLDNYTDLKNPDFGRLAEVIGFHGRTVTRSEDLEEAVQDFLSQRGPALLDVHTSRAELVMPPQIEAKQVAGTALYAAKAVLNGRFDDVKHLLVDNFLKK
>NZ_CP040440.1|WP_049395430.1|3869405_3871010_-|membrane-protein
MSAPASAAPRRWFVAGDFNGFFGLVVDNLSILGFIAMALVGIFQFPADVVFGRMFPGTAFGVLVGNLLYTLMARRLAARTGRDDVTAMPLGLDAPTSIGMALLVLGPAFLAFKQQGMDPHAAGIATWQLGMAALVIMGVLKFVLSFFGEAVTRALPRAALLGSIAGIALVLMGLLPLLETLRSPLVGFTTLGLLLYVLIAKGKLPVRGPGVLLAFVFGTVLYYGLGLAGLGAPGFHVPEWVPPQVVLPLPTLGFLDGLPTAMTYLPLLLPFGLLMVVGGINVSESARAAGDDYRTRDILLVEAVATLVAGVCGGVAQTTPYIGQPAYKHMGARSGYTLLTGLFVGIGGMLGIISGLVQWLPLAVLAPIIVYVAIDITTQAFQATPRHHTGAMVFGFLPSVAYLLAIKAPGWIAPDQLPQLLTKLEGHGLPELAVIFTLGNGFIITSMLWISAVAAMVDGRLRRACGFLLVAAVLTLFGLIHSVDPRGGIYLPWELDGLARIISWQFAGAYVALALLLGLLSLQKQPVQPLGENN
>NZ_CP040440.1|WP_049395428.1|3868615_3869326_+|glutathione-S-transferase
MQYALYYWTGIQGRGEFVRLALEDAGADYIDMARVHGDAVMQPFLDGSSDGPQPFAPPFLKAGRQVIAQVAAILDFLGPTLDLVPQAASRRMQALQLQLTIADLVAEVHDTHHPIAASKYYEAQKTEAKARAASLRSERLPKFLGYFERVLAANGGRHALREHSYVDLSLFQLLSGLDYMFPRRMQALAPTLPLLRALQARVAKRPNIAAYLASERRLPFNTNGIFRHYPELDGER
>NZ_CP040440.1|WP_049395427.1|3867624_3868446_-|DUF3014-domain-containing-protein
MQSGKAVWPWVLGVVVIGGAGGWLFRDQLKRLADGVSVPVQSTPASTGAPPQPQAAAEPAPAPPAIKHPLDTEAAADPALPKLADSDTAAWGALSQLLQGEGPLTLLLRDHLIQRLVTQVDNLDKPSVPPTALAARPLPGNLQVEPGEGGERIAASNAARYAPYVQAFTALDPAATATAYKRFYPLIQQAYVDLGRPDGYFNDRLVAVIDHLLDTPELAQSPVVQRDERGRYRFVDPTLQSRSIGQKALLRMDAAQARAVKQQLRAIRSAITR
>NZ_CP040440.1|WP_012481080.1|3864857_3867443_-|ATP-dependent-chaperone-ClpB
MRMDKLTSRFQQALADAQSLAVGRDNSIIEPVHLFSALLDQQGGSTRPLLAQAGVNVPVLRERLTEALDALPKVSGQAGNVSMGNDLGRLLNQTDKLAQQHGDAFIASEWFVLAALDDGGTLGMALRAAGADKTRLQAAIDKLRGGENVQSENAEEQRQALEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINDEVPEGLRGKRVLSLDMGALIAGAKFRGEFEERLKGVLNDLAKNEGQIILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVFVGEPSVEDTIAILRGLKEKYAVHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASRLRMEIDSKPEELDRLERRVIQLKIQREMLKKEKDEASRQRLADLENDIDGLEREFSDLNEIWKSEKAALQGATKIKEQVEQAKLELEAAQRRQDFAKMSEIQYGLLPQLEKQLAAAQEAEHKDFKLVQDRVTDEEIAEVVSRWTGIPVNKMLEGERDKLLRMEEVLHNRVVGQEEAIKVVSDAVRRSRAGLSDPNRPAGSFLFLGPTGVGKTELCKSLAEFLFDSADAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRRPYSLILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQDMSADDSPEAYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKQQIKQIARIQMRGLEKRLAERGLKLAVSDAAFDLLGNVGFDPVYGARPLKRAIQSQLENPLAQQILSGAFVNGDTIEVGNDGGRLVFAKA
>NZ_CP040440.1|WP_012481079.1|3863984_3864785_+|MipA/OmpV-family-protein
MSQLRRSPALLCLALLPLFAAPIAHAKDDHWTFEVAAGGGVAPRYSGSEEYRATPSLSFDVTSPGGWFLGTSGIGWGTSIGEHTRVRAYVGASGIRKEKDSLLGGSDFLRGMGDIDARPLVGVSAGYTLGEAVLSGSWQFTRKDEDKAENGLATQQIHLNLSMPLFDLAGGVISGSVSTDYGNRGYMQTWYGVSPEQAARTGFAEHKPKAGLVSAGVGLKWSHRVGRNGNWYISAEGTRLLGDAADSPIVQKANQFGLMSGYTHRF
>NZ_CP040440.1|WP_049395425.1|3862554_3863844_+|two-component-sensor-histidine-kinase
MKRLFLWLWFITGACFLVSVFFLNHILDGIYTPVQDRVFVQQVRGQVYALRSGLAGLDADQQRERLKQWQPHYGIALTLLDKPPALDAQEQVAVKADGFIVRDQYQQVLLPIEGSDGRWLHLRLPGAVQMTTYMTIAAYLSILLLVGASLYAWVRLLWRDLEALRRHADRIGSGDLQARAQVSPRSQIRVIVDHSNRMAARVAELVQRQRDLTHAISHELRTPIARVAFGLDLMQDSDDRERRERLARGLHGDLAELNRLVSELLAYERLEHPSEGEPMQRIEANDWLQACLADARRDAERAGVILRVQPSALPRVDAEPRLLQLALSNLVGNALRHARSQVEVSLVGVSGRACLRVDDDGPGIAEADREKVMRPFTRLDDSRSRDTGGFGLGLAIVSRIAVRHGGELRISRATLGGARMEMHWPLAAS
>NZ_CP040440.1|WP_012481087.1|3877726_3878485_+|trehalose-phosphatase
MAEPLPLRPPPPLLDDACALFLDVDGTLIEFAARPDAVQLLPDVREAIGRISDRLEGAVALVSGRPLEQLDQLFAPLQLPAAGLHGHELRGEDGRVLRDEHDDDTAEWLHALHQQAMRFAHGHPGVLVEDKGVGLALHWRGAPRAASDVRAFADRHVRGRTSYRLQPGDHVVEFVPVGTDKGRAVRRMMQYLPFRGRLPVFLGDDLTDEFGFDAANGQHGWSVLVGEREPSAAVFALPDIRSVHAWLRENAY
>NZ_CP040440.1|WP_012481088.1|3878526_3880308_+|glycoside-hydrolase-family-15-protein
MTQPDLDLGVVGNGSFGALVDKHARVVWSCLPTFDGDPTFCALLGPNQQTGGDFAIELEDFASSEQEYLTNTAILRTVLRDTQGGALEILDFAPRWRQNDRFYRPVSLIRQVRPLAGSPRITVRARPLADWGARVPESTWGSNHVRWILPEHVLRLTTDVPVRFVRDGLPFVLNHPIHLILGVDESLNRSISGYVQEAFQRTRDYWREWVRYLSIPLEWQDAVIRSAITLKLCQYEDSGAIIAAMTTSIPEAPGSVRNWDYRYCWLRDAAFVVRALNRLGATRTMEQFLGYIFNLATTDGTLQPLYGIGFEAKLDEDEVPSLSGYRGMGPVRRGNLAWVQRQHDVYGSVVLASTQLFFDRRLQDPGDAHTFARLEPLGEQAFALHDVPDAGLWEFRGRTEVHTYTSAMCWAACDRLCKIAVRLKRDDRAHYWRERADTIHARIMAESWNEELGHFTDTFGGHRLDASLLLLADIGFIDALDTRFIATVDAIGRDLKHGNSLYRYVAPDDFGEPETSFTICTFWYIDALAAIGRMDEAREMFELLLKQRNHLGLLSEDLAFDSGEAWGNFPQTYSHVGLITAAMRLSRSWQEAS
>NZ_CP040440.1|WP_012481089.1|3880304_3881669_+|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)
MSRLVVVSNRVAVPGENRAGGLAVGLLAALKERGGLWFGWSGKTVKEGSGMLHRQKDGDIDYVTMDLSKREVDGYYNGFANRTLWPLLHFRLDLVDYDRGTRETYHKVNALFADKLAPLLREDDIVWIHDYHLIPLGALLRERGIGCRIGFFLHIPMPSADLLQAMPDHLRLFSALYAYDLVGFQTQRDADRFQTYLRLFGGGRVLDNGELEAPGGRRFRAAAFPIGIDTELIARQAGTAATKAAVKNLRASLRDRQLAIGVDRLDYSKGLPERFLGFERYLERHPDQRGSLTYLQIAPVSRGDVTEYRQLRSQLEQIAGHINGGHAEPDWTPLRYVNQNFTHATLTGFYRAAAVGLVTPLRDGMNLVAKEYVASQDPEDPGVLVLSLLAGAADELKQALLVNPHDLDGVADAIATAATMSLSRRKERWHAMMDHLRTYDINHWRRSYLDALEG
>NZ_CP040440.1|WP_049395383.1|3881741_3882179_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MKVGSNRSEAAAEAGSAVIVFDGVCALCNRWVRFLLRFDRAGRYRFAAMQGQQGSAMLRAHGQDPQDPMSFLLLDAQGAWTDTDAILRVLAGLGGAWRLTGVLRAVPRGWRDAAYRVLARNRYRWFGRHDACHLPAPEQAARFLD
>NZ_CP040440.1|WP_080101847.1|3882153_3882660_-|DUF4166-domain-containing-protein
MLGPAFATLAAPVQALHAAPLPCRYVGQARIVRGRHWLVPLLAVLARLPKDGDALPTEVAFSAHGQGEQWARQFGRWPMVSRLWAHEGCLREQLGAVRFEFDLQAREGGIDWSVRRVWAFGLLPLPRRWFGGVRCREAWQGERYTFLVDVTLPWAGALIRYEGWLEPQ
>NZ_CP040440.1|WP_049395382.1|3882680_3883451_-|peptidoglycan-editing-factor-PgeF
MAAALPVLQADWPAPPGVHALTTRRHGAGISPAPFAQFNLGNRHAADGDTPANVEHNRQLLQQGLGLPSTPHWLRQVHSSTVLRFTAPPVPGASEPVADAAVTSVPGVVLAILTADCLPVVFAAADGSEVGAAHAGWRGLADGMLEATVAAMQTPPAQLRAWLGPAAGPADYEIGEEVYHAFVGHDPAAEAAFVATRAGHWKVDLFALARQRLQAAGMDPAQVHGGTVSTMADPDLYSHRRDRRTGRMATLAWIAP
>NZ_CP040440.1|WP_080354139.1|3883450_3884440_-|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MSEQPSESARQAIVPDTAAGRRFDAVVAELFPEYSRSRLTEWIKAGEVLLDGAQVRPRDPLRGGEVVTLNVVLETQTDAQPEDIPLDVLFEDEHLLVINKPVGLVVHPGAGNHSGTLVNALLFRDPSVAVLPRAGIVHRLDKDTSGVMVVAKTLEAQTALVEQLAARDVHRQYLAIVMGALVAGGTADAPIDRHPRDRLKMAVREDGKEAITHYRLRERFRAHTALECRLETGRTHQIRVHMAHVRHPIIGDPLYGGALKLPKGGSDELVAALRGFKRQALHAETLEFTHPITGELVRNTAPVPEDMLHLMKVLREDSEAFAARERDRW
>NZ_CP040440.1|WP_024956778.1|3884553_3885441_+|outer-membrane-protein-assembly-factor-BamD
MIRRSSMLSAPVRLTALLLVLVIAATGCHRGAKKGDRPDEGTPVEQLYEKSHKLMQGGNWSGAETSFRRLVAQYPYGPYTEQAMIETAYAQYKAGKHDDAVSSIDRFIRTYPTHRNIAYLYYLRGLANSNRSTVFLRRVWSLDASRRDLSTPHQAYSDFNIVVDRYPNSRYAADARQRMLELRDVFAQHELDNALYYMRRGAWVSAAGRANYLLETYPQSAFQYDAVAVLADSYTHLGNKTLADDARRVLQLNQPDHPWLEGKWPKYPWMIRKLNPFAGEKSASTGQRNARLEKK
>NZ_CP040440.1|WP_044570773.1|3885631_3886834_+|lipase
MTPPPRRFRPLACLLATALLALSSGPVAAAPPAPGDLLSAAPYRAPWVPSKAAQAYKLHYRTPDHRGQLAEGTGLLYLPAGAAPAGGWPVVSWAHGTQGIADRCAPSVSGPYQPERDGRFLDQFLAQGYAVVAADYQGLGSPGDHAYLHVRTAARNAIDLVKASRQYLGTATLSPRWVSVGHSQGGAAALTAGHLAPTYAGPSLHYRGSFTTGTPTAVELTALVMKPDNRTANPGALNAYHAYLLDGLLQVAPQIDRVLSDTGRTRVAVAREQCLGELATTLDGADTGSMFTAPLTSVPGIWAVLYDYLGVPRRGFSQPLMLGHGSEDRDVPYLTTLLYAAGLALRGEPVAFRRYPVDHRGTLDAAAADGLAFVRARLEDGHFNDAAETAGLEQLLDDAR
>NZ_CP040440.1|WP_049397002.1|3887321_3888956_-|NAD+-synthase
MASIRIAMAQFDFPVGDVAGNTERIIEMIGQARDEYGAELVMFPELAVSGYPPEDLLLRPGFLYECEQAMMRIAAACRGITAVVGWPQAAGAVVYNAASVLRDGLVEQTYRKRELPNYAVFDERRYFDVDPDGGSCVFEVNGIPVGLLICEDLWFAEPLADTVRAGAQLVVVPNASPYERGKHAQRDAVLAARTRESGAAIAYLNVVGGQDALVFDGASVVADGDGTVHPAAAAFVDQWLVVEYDGQTRRFMPHVWMDDGDESMDALAWRAVTRGIQDYCRKNGFKKVWLGLSGGIDSALVLALAVDALGAENVTAVRLPSRYTAGMSNDLAAEQCQALGVKLEAVSIEPAFKGLMESLAPMFEGTAPDVTEENLQSRSRGVILMALANKFGGLLLTTGNKSEYAVGYATIYGDMCGGYAPLKDLYKTEVFGLSKWRNTVGGAPVIPPAVISRPPSAELRENQLDQDSLPAYDVLDGILYRYIDQEQSRTEIVAAGYDAAVVDRVLRLVRISEWKRHQAAPGPKVSRRAFGRERRYPISNGYKG

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Crispr_ID: NZ_CP040440_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040440_8

3990359-3990471

Orphan

Consensus_repeat	Method
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040440_8

>merge|NZ_CP040440|8|3990359-3990471|CRISPRCasFinder
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGGCGGTAGATCCGCGCCATGCGTGGATGGGAAAGCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGTTGCGG

>NZ_CP040440|8|7|3990359-3990471|CRISPRCasFinder
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	CGGTAGATCCGCGCCATGCGTGGATGGGAAA
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGTTGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040440.1\|WP_005410874.1\|3993923_3996035_-\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|236794
NZ_CP040440.1\|WP_005418954.1\|3996042_3996429_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NZ_CP040440.1\|WP_005418950.1\|3990610_3991888_-\|citrate-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP040440.1\|WP_049396150.1\|3985351_3988078_-\|usher-protein	unknown	unknown	gnl\|CDD\|185210
NZ_CP040440.1\|WP_005410860.1\|3973381_3974440_-\|pilus-assembly-protein-PilM	unknown	unknown	gnl\|CDD\|378558
NZ_CP040440.1\|WP_049396152.1\|3999290_3999956_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP040440.1\|WP_005410861.1\|3974659_3977083_+\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|227342
NZ_CP040440.1\|WP_143566001.1\|4000247_4003316_+\|formate-dehydrogenase-N-subunit-alpha	unknown	unknown	gnl\|CDD\|273689
NZ_CP040440.1\|WP_005410877.1\|3998880_3999180_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP040440.1\|WP_021203706.1\|3988128_3988638_-\|giant-cable-pilus-fimbrial-subunit	unknown	unknown	gnl\|CDD\|367947
NZ_CP040440.1\|WP_049396147.1\|3979046_3983423_-\|autotransporter	unknown	unknown	gnl\|CDD\|240612
NZ_CP040440.1\|WP_049396148.1\|3983491_3984199_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|237939
NZ_CP040440.1\|WP_005418951.1\|3992184_3992427_-\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NZ_CP040440.1\|WP_049396149.1\|3984215_3985355_-\|minor-pilin-and-initiator-protein	unknown	unknown	gnl\|CDD\|284778
NZ_CP040440.1\|WP_005410881.1\|4003326_4004244_+\|formate-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|273705
NZ_CP040440.1\|WP_005414350.1\|3977412_3978057_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_005410876.1\|3996612_3998775_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP040440.1\|WP_005410863.1\|3978233_3978977_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_012481150.1\|3989156_3990245_-\|membrane-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP040440.1\|WP_049396151.1\|3992515_3993454_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239115

Protein	Function_ID	Function_description	E-value
NZ_CP040440.1\|WP_005410874.1\|3993923_3996035_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP040440.1\|WP_005418954.1\|3996042_3996429_-\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	9.63336e-59
NZ_CP040440.1\|WP_005418950.1\|3990610_3991888_-\|citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP040440.1\|WP_049396150.1\|3985351_3988078_-\|usher-protein	gnl\|CDD\|185210	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional.	2.86765e-180
NZ_CP040440.1\|WP_005410860.1\|3973381_3974440_-\|pilus-assembly-protein-PilM	gnl\|CDD\|378558	pfam11104, PilM_2, Type IV pilus assembly protein PilM;. The type IV pilus assembly protein PilM is required for competency and pilus biogenesis. It binds to PilN and ATP.	8.46083e-170
NZ_CP040440.1\|WP_049396152.1\|3999290_3999956_-\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	8.07248e-121
NZ_CP040440.1\|WP_005410861.1\|3974659_3977083_+\|penicillin-binding-protein-1A	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP040440.1\|WP_143566001.1\|4000247_4003316_+\|formate-dehydrogenase-N-subunit-alpha	gnl\|CDD\|273689	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit. This model describes a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase (pfam01568 and pfam00384, respectively). The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilized mainly in the nitrate respiration by nitrate reductase. In E. coli and Salmonella, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in E. coli which contain selenocysteine. This model is well-defined, with a large, unpopulated trusted/noise gap. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	0
NZ_CP040440.1\|WP_005410877.1\|3998880_3999180_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.39874e-21
NZ_CP040440.1\|WP_021203706.1\|3988128_3988638_-\|giant-cable-pilus-fimbrial-subunit	gnl\|CDD\|367947	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit. Fimbriae, also known as pili, form filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometres. They enable the cell to colonise host epithelia. This family constitutes the major subunits of CS1 like pili, including CS2 and CFA1 from Escherichia coli, and also the Cable type II pilin major subunit from Burkholderia cepacia. The major subunit of CS1 pili is called CooA. Periplasmic CooA is mostly complexed with the assembly protein CooB. In addition, a small pool of CooA multimers, and CooA-CooD complexes exists, but the functional significance is unknown. A member of this family has also been identified in Salmonella typhi and Salmonella enterica.	6.96139e-21
NZ_CP040440.1\|WP_049396147.1\|3979046_3983423_-\|autotransporter	gnl\|CDD\|240612	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll. This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.	1.13697e-16
NZ_CP040440.1\|WP_049396148.1\|3983491_3984199_-\|pilus-assembly-protein	gnl\|CDD\|237939	PRK15308, PRK15308, fimbrial protein TcfA.	9.19702e-50
NZ_CP040440.1\|WP_005418951.1\|3992184_3992427_-\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	9.22252e-52
NZ_CP040440.1\|WP_049396149.1\|3984215_3985355_-\|minor-pilin-and-initiator-protein	gnl\|CDD\|284778	pfam07434, CblD, CblD like pilus biogenesis initiator. This family consists of several minor pilin proteins including CblD from Burkholderia cepacia which is known to CblD be the initiator of pilus biogenesis. The family also contains a variety of Enterobacterial minor pilin proteins.	4.03311e-51
NZ_CP040440.1\|WP_005410881.1\|4003326_4004244_+\|formate-dehydrogenase-subunit-beta	gnl\|CDD\|273705	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing. This model represents the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (TIGR01553) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	7.07461e-156
NZ_CP040440.1\|WP_005410876.1\|3996612_3998775_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP040440.1\|WP_012481150.1\|3989156_3990245_-\|membrane-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	5.57878e-06
NZ_CP040440.1\|WP_049396151.1\|3992515_3993454_-\|nucleoside-hydrolase	gnl\|CDD\|239115	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR). .	5.33538e-119

>NZ_CP040440.1|WP_012481150.1|3989156_3990245_-|membrane-protein
MSTRFDPPERGPLGPDVAAVVTAPIVAPPSESAVSWGAIFAGATAAAALSLILLILGVGLGLSSVSPWSFEGVSKETFGWSSIIWLTFTALAASGLGGYLAGRLRTKWTQIHGDETYFRDTAHGFVSWAVATLLTAGLLTSAIGGVLGAGAKVAGAAAGVAASTAGVAAAGAGSTAAAAPEGDLNYWVDSLFRNATDAGPAAAGAPPAPGAPDAASGVAATDPAPPPPAASVGPRDVRVGLPPRPMPGNGPMGDRREVRAEVNRIIVNSLQGDGLDPADTQYLAQLIARETGMSPAEAQARVTDVQTRMRAALEKARNTAKQAADDARKATAYAALWLFITLLIGAFFASLSATWGGRRRDL
>NZ_CP040440.1|WP_021203706.1|3988128_3988638_-|giant-cable-pilus-fimbrial-subunit
MHAIIKKAALAAALATASLSAHAVETKISVYADVDPTLALLRDDGTPLPDMVTLTHDPLRGLIPNTQRVRIHSNDETADIEARIDGSFFLANETGAVTVPMTISLNNRALGAAAIEYKATDLFNGAGSTPGASISMPLTIAQTTPAPILTKGAYSGLVNVVLNQKAATP
>NZ_CP040440.1|WP_049396150.1|3985351_3988078_-|usher-protein
MTLHAPAVTRLAVALALALSTPLAAARGVPPGFEDLVEGQTEQLDIQLFGRSAGLSPVRVTLEHVQLEDPARVLQSLDLPAEAQAALLPALSQPLPRNSHLACRFGGASAGCGYIDPPEAPDEVRALYDEGEGAVRLFVARQWIPGKPAAERFHTVTANAENAFLHQQTLNLSGGRDYQSLSARGVGTLGLFDRGHLSAEWYHNQQRYRSHSDDDFQFDNVYYRHDLGPAHYLQAGRMDRRNLSSPQGGTFSFSMLPLDRFQGARLGTTQAYVDTDAAVQASPLTVLLARDARVDVFDGERLLQTFYLQAGINQIDTRNFPFGNYLVRMRIYEDGVLVRTEEAPFDKGGDWTNSQWQWFVQGGHRNERRSDAFDGERIAMAGVRVPLGRDAAMTAGAATFGGHRYGELRLDLRRVMATQEVRATFSGMRGSDGSNGQQHQLSYRRTASWNLYQQRMRGKACQFEAEARDQLGCTNALSGSMSLPLAGGNVYVGYTRRQTWRTGWHRPEFEQDPLFGLEPLLPPGPLEPRREPLLSRTWQASFSRSHRWQDFSVSTRVGVWRQNSTDSVRGSTERDRGIYVNLSLSRRHRSAAGDGQRRYAVDVRQPQHQRPAIDYSVGQSLRQELDTQYRELSGELRANNNERYSASLGGQLQNGIGHTSASLARYQQRGRSETGYSGAHSSGFALGRRGFYWSGANGADAGLAVQVADTDDADLRGVAAELQVGGLRRQRLQIGERRLLPLPAYQSQRAEVQDASTLDSIAAIRVTGVGGARPMFLTPGKLMRMPVPIEVTYTFIGHARDLAGAPLGGARILNAPVPGTSANGGFVADFPRRETTLYLLQDDRLLHCPLQVRERRQVVLLVGAVHCEPLAVAQLPAEIRQQARVTRLLQERALIAATPRTAAAGGTP
>NZ_CP040440.1|WP_049396149.1|3984215_3985355_-|minor-pilin-and-initiator-protein
MNRRWMFVLMLVSALVLVMPRAWAQWPPETHPADQSRDIVMSWDRSAVPGDVELWAPRTVLGFSHDLALKYGQIHVVCGSASDSEFGRCPTEGSLTQVPGVTEIGLELVEERTGLRAEIRVLGYLQRAMSGRACGLDFWEDIGTRRMLHAASWFICTVDQPLGTGAKLDIPASEIAKLVAGHWKATMRLNIKADPAAAPVATATFNFDFTVTDYDAISIYFPTFDTVAPLVNLDLRYDPIQKVVGGRKQLDMCLYDGLGSQSEYLDVTVRDSGPRPPAGSDFSLWHRDGGSDASQRLDYRVHLDYGGHRLAMKHNVKQQLRGIDSAQLRLVMLPGISQPVYCVPTPLTLETPPTPIASQRPGLYEGELTVVLDVPTAKP
>NZ_CP040440.1|WP_049396148.1|3983491_3984199_-|pilus-assembly-protein
MKKLLFCLLPVSVLLALPAHANLSIHPMRAAVDAKRGTQIRVYSQSTIPQYVQTRLRRIVNPATPAEEEQEMEASDAAIAITPGKFALSGGGNRLIRVIPLQQVQKETAYRLYFEGVRGPDDAPLEDDEGAQANIGVSLVWGALVNVTPDDGVVDLRLQDNTLHNTGTLRVGIIGAEECTAAGTCTPHPVSHSLYPDAALTLPFQLQPGNSLQLRYRLTRDGYREHVRTIEPTAT
>NZ_CP040440.1|WP_049396147.1|3979046_3983423_-|autotransporter
MNRIYRRIWNHAKGCWEVASELTRPCGRKSSRATGAGGLLMVALLLAGGDAHAKTRYYIGCDPFNLGNGEFVSCSPIAGRYDDTMFVGYALTNGLNSLGYGAGVNMKGDNTTAFGIGARIDGQNSAAFGFKASTYAVDSVAVGYNARTTADGGHNVAVGANAFAAYIGATALGNKAEARAANAIALGSGSSSRGVDALSLGANSSTSAAGSMAVGAKASATRTNAIALGLSSVAQQENAVALGASTIANGVGGVALGAKAMVDTGAGTGGVAIGGGARAGSQGYTGAIAIGGESRAYTDSIALGYAASASAQGAVALGVRSVATEANTVSVGSSSVRRRIVNVADGRVTASSTDAVTGKQLHAMNERVDGMIKQDSGGGVVRIANSNTGTEVSMRNAVLATRKVSGVSDGALTTTSTEAVNGRQLNTTNGNVTKAQTAADVAKADASKALAQVTTVTGLIGQTSSTSSVRLGEKNSGTSLDVRNSANANRKVTGVADATLSTSSTEAVTGRQLNTTNENVAKAQTAAGEAKSDASKALTQVVTLGGLVGQVSATGNVRLGEKNSGTVLDVRNSANASRKVTGVADATLSTSSTEAVTGKQLNTTNENVAKAQTAADTAKMDAGNALAQAVTLGGLVGQVSATGNVRLGEENSGTLLDVRNNKNENRRINGVSDGDLSAGSSDGVSGRQLFATNVRLAAVESAGKYISVGVDAFSRDAVAGQAGVAIGDSAKAGAEGATAVGAFSTSLGRNGVAIGRASLVAEVAANGFAMGAGSNVHANNGVAIGSGAKVAATAGESLALGAGSEAIEAGTASFGASGVGRRLVNVSRGTADHNAITVSQLKDALVTLGAGAGMDASGNIIAPTYSVQAGTQNTVEDALMALDGAVITAGRRADKVEDQLSSIFRDSPSARADGMNQIALNGVNGMVLTNLADGRVAPGSRDAVTGSQLYAAEQKISQNRNDLEAMRKEREMGQEAMRGLDSSVIDYGGARLTGVSDGSVSADSHDVVTGRQLFGVSDRVSKIEHQGRFLKIDTDQLSEDAFAGFLGVAIGDSARTQGEGGTAVGSFASSLGVNSVAIGRGSSVSANSLNGFAVGAGAHVASTNGVSIGASSRVHAGAEGSLALGVGSEATEAGTASFGSAGTERRLVNIANGTANHNAATVGQLRGALSALGGEVDANGNIVGPSFAVQGQSQSTLNGALEALDGAVVSNRSRVNQVESQLRSVFQDTPSVRADGLNQLTLAGTHGMVISNVANGLIAAGSRDAVNGGQLHSMQQQLNGRMDGLEQRIDAPQPQPQPQAMAVASVPEPEAPVPQAEGGQQVASVGEGEKPAPQPKTKKEDTPKPQVDTAELEKMLARANEYTDGAISSFERRLDKMDKRFNRMAAMSSAQTAMAMNTAGLATYNRLGAGVGYSEGESAMAVGYQRVLNEKGSATFSLNGAFTNSGERSMGVGVGIGW
>NZ_CP040440.1|WP_005410863.1|3978233_3978977_-|hypothetical-protein
MYRWVRGIISYRTFYIWRARFRYYTRNLDLWTLMSGLCIAGLLLVLWYLWQMLGVPPPRVHPQAAALRIDGVTSEAIHRIVLVRHAGSTPGAPFTTPEEVRASTLRTMRVRQVMDSEVVWRLKADMLADIADYITATGGCFPYNCRRVLDRLDYVRQAGVENAQINAALSTVLEVPLDQMPPLEADEHERVKSGWSDGFDDIYYQSWLLRDLQVMHAQMMREYPQRAPAPWLPRLFSDPLRDTRFVW
>NZ_CP040440.1|WP_005414350.1|3977412_3978057_+|hypothetical-protein
MHRARQHAASQTRERRHRLAHEAARLMAEGGIRDYHQAKLKAASRLGIHDDASLPRNTEIEDALREYQRLFSGPQHGNELQRRREAAMRALEFLHGFAPRLAGPVLEGTADANSPVQLHLHSDDPEAVHRFLDEHGIPAESRTRRLRMDRERSLDVPVWVFSAEELTFDLAVLPYDALRQAPLSPVDEKPMRRASVTQLRQLLAEAEITAYIGG
>NZ_CP040440.1|WP_005410861.1|3974659_3977083_+|penicillin-binding-protein-1A
MTRLRRWLRWIFLIVLVLALIGAAAVGGLYYAVSSKLPDVQTLRDVEMQEPMYVYAADGKLMAVFGETRRTPITMKDVPERLKQAFLATEDARFYEHGGVDYMGIGRAVWLLATTNDKRVPGGSTITQQVARQFFLSSEYSYTRKLAEILLARKIESELSKDEIFELYLNKSFFGNRAYGVAAAAEFYYGKKLNELDLDEMASLAGIPKFPSSGNPISNPERARQRRDNYVLQRMADLKFVSQAEADAAKAVPMHATAHEPPVQVDAPYVAELVRQEMIARFGGDVVNKGYHVTTTIDSTLQTAANQSVRDGLLLYDHRHGWHGVEKQVQVGAGEDAAALAEHLRGMYGQAGLLPAIVASTGADGSATVVLANRSEIVLPAGAAKWTNKTPGKLVQRGDIVRVRAGAKEGEWLLDQIPRGQSALVSLDAHNGALKALVGGFSFSGNKFNRATQARRQPGSSFKPFIYAAAFDKGYNPASIVLDAPVVFRDRRGKTWAPQNDGGGFRGPMRLREALVQSRNLVSVRLLDGMGVDYARKYISEFGFAESELPPNLSMSLGTASLTPLSVARGYAVFANGGSRVDTWLIDQVNDRDGNLVFKENPALACRDCAGSSDQPVNQVVDGFNFGAPAPKVDPAAAAKAEAKTETPAAPANPDARTAPRAIDARTAYQLVSMMRDVVQRGTGVQAKVLGREDVGGKTGSTNDHRDAWFSGFGGPYVTTVWVGRDDFRSLGYREYGGKAALPIWIDYMRTALKDTPIAQNEPPSGMVQATLNGATEWVKVEDMDRLTDYDLNLNTPQADAAAFDIF
>NZ_CP040440.1|WP_005410860.1|3973381_3974440_-|pilus-assembly-protein-PilM
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAAVAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELGGLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEEAGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLAQMTLGPKVNAHALAQDAPALMIATGLALRSFD
>NZ_CP040440.1|WP_005418950.1|3990610_3991888_-|citrate-synthase
MSDLDQVTLNAGDKSVVLPVIKPTLGNDCVDIAKLTKETGFFTYDSGFTATASCKSAITYIDGDKGVLLYRGYPIEQLSEKSSYVEVAYLLINGERPSAEQLKAFTDELTAEANVDDSINTLIGSFAKDAHPMAILAAAIAQLSAIYHDSLDLSDAEQRRKAAVRLIAKVPTLSALIYRHGKGLPANKPDTSLDYVSRFLKQTFESADGQYDLNPDVVKALDLLFILHADHEQNASTSTVRLVGSTGANPYASVAAGVTALWGPAHGGANEAVLKMLEEIGSADNVESAVVKAKDKTSGFRLMGFGHRVYKNFDPRAKVIGEMTSKVLKQLGVQDPLLDVAVKLEQAALQDEYFVARKLYPNVDFYSGIIYKALQIPTEMFTVMFALGRTSGWVSHWLEQQVDPEMKIGRPRQVYTGSDVRDYQG
>NZ_CP040440.1|WP_005418951.1|3992184_3992427_-|type-B-50S-ribosomal-protein-L31
MKADIHPNYRDVVFHDVTSDFKFLTRSTMGTKETIQWEDGNEYPLVKVEISSASHPFYTGKHKVIDTSGRIDKFQKRYAR
>NZ_CP040440.1|WP_049396151.1|3992515_3993454_-|nucleoside-hydrolase
MTHKIPLLIDTDPGVDDALALLMAFADERHDVVALTIAAGNVGLQYTVRNALKLCDIVGRPDVPVFAGSPDPLLHPSVDAAHVHGRDGYGDVDLPPPSRQAEAEHAALAILRLSHEHAGELMLVMLGPLTNLALALKLDPTLPQRIKRIVVMGGAVTCHGNITPAAEFNIAFDPEAAHVVFTSFKHLLVSDWEATVAHGLPLEDAEKWLQADSDRARFYELISRKTRALSEDAKGGRWYTADAVAMAWALNPEGQLQVESRPLNVELNGTFSRGATIVDWNRQTGQPDNCDLLMAYDQQRFEALVRQALGAD
>NZ_CP040440.1|WP_005410874.1|3993923_3996035_-|ATP-dependent-DNA-helicase-RecG
MARKAAVTPVLSPSGEASLAMLAGVGPAVAAKLQARGLATLQDLWLHLPLRYEDRTRLTRIEDLRNGVPAQVEGRVVAVERGMRYRPMLKVAVEDEGRGTLVLRFFHFRQQQVGQFAVGNRLRCFGTPKPGQLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPMTMRKLIGQALDRLPEESALELLPSGWLDGLGLPSLRSALLTVHRPPPDADLAALAAGTHPAQRRLAMEELLAHHLSLRRQRIALQAHHAPPLAGPGKLAKALLKQLPFALTGAQARVFKQIREDLARPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWLEPLGVRIAWLAGKVTGKARAKVMEQVASGEAQVVVGTHALMQEAVVFQDLALAIVDEQHRFGVHQRLALRDKGAGGNSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQTVALNNDRRPELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRVGLVHGRLKAAEKLATMVAFKAGDIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQLRGRVGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQTGLAGFRIADLARDAGLLPGVHDLAERLLDQQPALADRVVQRWIGTAVRYASA
>NZ_CP040440.1|WP_005418954.1|3996042_3996429_-|RidA-family-protein
MSRQIINTEKAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGDIVGAGDVEAQARRAFDNLKAVAEAAGGSLDKVVRLGLYLTDLGEFAKVNAVMQDYFQAPYPARSTIEVSGLPKGASFEVDAVMVID
>NZ_CP040440.1|WP_005410876.1|3996612_3998775_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MNPGPTAKVAAAPAAAVPDYVLQLERAAHYLPPEQLPLLRRAWEVGASAHAGQTRKSGEPYITHPVAVAQVLAELGLDVEALIAAILHDTIEDTPLTREALAAEFGEAVAELVDGVTKLDKLKFRDRQEAAAESFRKMLLAMSRDLRVIMIKLADRLHNMRTLGAQSREARGRIARETLEIYAPIAQRLGMSLVKSELQNLGFKALYPWRHAIIEKHIRSQPVVRREAMAQVEVQLSQRLAKEGIEHRLISRIKTPWSIYNKMRDENKSFDQVMDVFGFRLVVRSVPSCYHALGSVHATFKPLDGRFRDFIAIPKANGYQSLHTVLFGPYGSPIEVQIRTEEMDLIAERGVAAHWTYKFGGDSPNSAQSRAHAWIVELIDSQRAAGSSLEFLDNVKVDLFPDEVYLFTPKGKILALPRNSTALDFAYAVHTDVGNMAVASRVDKKLVPLRTKLVSGQSVEIITARSATPKPQWLEFVVTSKARTAIRHQLKQLEHEDAVQLGHRMLDRALEAMDSSLERLPKGRLDAFLAEHRFPRLEALLAEVALGNWMPTQAAQALMAYAELRGGPHSRHHSQEKILINGSERGVVTFAGCCQPIPGDEIMGYHTAGKGIVVHRMDCPNLAELRKSPERWVPIGWDTTVSGDYDTSLVVEVENGTGVLAQLAAAIAQSHSNIERVDYLDRDFNAAVLAFNIQVRDRNHLAEVMRRLRRLSVVQSVRRQ
>NZ_CP040440.1|WP_005410877.1|3998880_3999180_-|DNA-directed-RNA-polymerase-subunit-omega
MARITVEDCLEVVNNRFELVMMASKRARQLANGVQATLDNSETEDKPTVLALREIAARKIDNALIDEVEKAERERAEREALEWAAAEVVADEDMSKNDD
>NZ_CP040440.1|WP_049396152.1|3999290_3999956_-|guanylate-kinase
MSAASKPSDAVARGTLYIVAAPSGAGKSSIVNATLARDPQIALSISFTSRAMRPGEVNGQHYHFVSAEKFEQMIAAGDFFEHAWVHGDWKGTARQSVEPQLAAGQDVLLEIDWQGAQQVRQLVPGTVTVFILPPSKQALQDRMRKRGQDSEAVIAQRLGAARDEMLHFNEFDYVIVNEVFDTAVDELCAIFTASRLRREAQKVRHAGLIQALLTPDPGATD
>NZ_CP040440.1|WP_143566001.1|4000247_4003316_+|formate-dehydrogenase-N-subunit-alpha
MPSMSRRQFLKVTGTTLVGSSLALMGFAPGIALAEVRQYKLTRATETRNTCTYCSVACGILMYSLGDGAKNAEPSIFHIEGDPDHPVNRGTLCPKGAGLADIIHSKSRLLYPEYRAPGSNEWKRLSWDDALDRIARLMKEDRDANFVQKNEAGQTVNRWLTTGMLAASATSNETAVLTHKVVRSLGMLAFDNQARVUHGPTVAGLAPTLGRGAMTNHWVDIKNADLILIMGGNAAEAHPCGFKWVTEAKAHNKARLIVVDPRFNRSAAVADVYAPIRTGTDIVFLGGLINYLLTEDRIQHEYVLNYTDMSFLVKDEFAFKDGLYSGYNAEKRSYDRSSWDYAYGDDGFVRSDPTLKDPRCVYNLLKQHYARYTVEMVERICGTPADSIRQIWDMIASTAGKDKAMTILYALGWTQHSIGAQNVRAGTMVQLLLGNIGVAGGGMNALRGHSNIQGLTDIGLMSDLLPGYLTLPKQDEQDYNAYIAKRTQKPLRANQMSFWQNYPKFHVSLMKSWWGDAATADNNWCFDYLPKLDKPYDMLQAYELMNEGKIHGYICQGFNPLASAPNKGKLISAFSKLKFMVSMDPLETETIAFWQNHGALNDVDPSTIQTEVFRLPTTSFAEENGAVVNSSRWLQWHWKGANPPGEARSDIEIMSELFHRIKAMYEKDGGAWWEPVRDLAWNYANPEVPTPEELAMEYNGKALTDVFDPKDPTKLVRKAGEQLAAFGDLRDDGSTSSGCWIYIGAWGPTGNMMARRDNSDPTGIGNTLGWAWAWPANRRVMYNRASCDVAGKPFDPRRTLLAWNGKNWGSVDVPDFKADEDPAGGMGPFIMNPEGIARFFAKAGMAEGPFPEHYEPFDTPLRSNPLSPGQALTLNNPAARVFASDRAQIGSPDEFPHVATTYRLTEHFHFWTKHGKLNAIIQPEQFVEIGAALADELGINNGSRVRVSSKRGHIEAVAMVTKRIKALQIDGRTVHQVGVPIHWGFLGAAKPGYIANTLTNAIGDGNSQTPESKCILVKVEKV
>NZ_CP040440.1|WP_005410881.1|4003326_4004244_+|formate-dehydrogenase-subunit-beta
MSLQSLDIIRRSATTTPSPEARGAHTGQVAKLIDVSKCIGCKACQVACMEWNDLRDEVGSCVGSYDNPPDLSDQSWTVMKFREYEDEKGKLEWLIRKEGCMHCSDPGCLKACPSPGAIIQYANGIVDFQEENCIGCGYCVTGCPFDVPRISKKDHKAYKCTLCSDRVAVGQEPACVKTCPTGAITFGSKQAMTEHAAGRVEDLKSRGYENAGLYDPQGVGGTHVMYVLQHVDKPELYADLPKDPRISPMVEVWKGVAKPLGVLAIAATAFAGFLHYIGIGRNTVNDEEEEEAEHEAKKIEEEQRP

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Crispr_ID: NZ_CP040440_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040440_9

4216613-4216713

Orphan

Consensus_repeat	Method
GCTCGCTGTAAGCGAGGGGCTGAGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040440_9

>merge|NZ_CP040440|9|4216613-4216713|CRISPRCasFinder
GCTCGCTGTAAGCGAGGGGCTGAGGGTGAAACGGGTAGGTGCCGACCGTTGGTCGGCACACCGGTTATTGCATGGCTCGCTGTAAGCGAGGGGCTGAGGGT

>NZ_CP040440|9|8|4216613-4216713|CRISPRCasFinder
GCTCGCTGTAAGCGAGGGGCTGAGGGT	GAAACGGGTAGGTGCCGACCGTTGGTCGGCACACCGGTTATTGCATG
GCTCGCTGTAAGCGAGGGGCTGAGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040440.1\|WP_005411059.1\|4205856_4206240_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NZ_CP040440.1\|WP_005411064.1\|4210751_4212929_-\|tail-specific-protease	unknown	unknown	gnl\|CDD\|236873
NZ_CP040440.1\|WP_005411077.1\|4227941_4228988_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP040440.1\|WP_049397130.1\|4226554_4227820_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP040440.1\|WP_049397136.1\|4218242_4219520_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP040440.1\|WP_033834551.1\|4221653_4222748_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP040440.1\|WP_049397133.1\|4223993_4226069_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP040440.1\|WP_005411061.1\|4207743_4208649_-\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
NZ_CP040440.1\|WP_049397139.1\|4203804_4205622_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NZ_CP040440.1\|WP_049397138.1\|4208653_4209895_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_005411065.1\|4213208_4214219_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP040440.1\|WP_024957042.1\|4206410_4207454_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183212
NZ_CP040440.1\|WP_005411067.1\|4214934_4215213_-\|DUF493-family-protein	unknown	unknown	gnl\|CDD\|179161
NZ_CP040440.1\|WP_005411078.1\|4229271_4230210_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917
NZ_CP040440.1\|WP_005411069.1\|4216924_4218142_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP040440.1\|WP_012481291.1\|4219516_4220662_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
NZ_CP040440.1\|WP_005411066.1\|4214236_4214947_-\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_CP040440.1\|WP_049397132.1\|4226072_4226558_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NZ_CP040440.1\|WP_049397134.1\|4222884_4223997_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP040440.1\|WP_005411063.1\|4209912_4210503_-\|DUF2242-domain-containing-protein	unknown	unknown	gnl\|CDD\|378349

Protein	Function_ID	Function_description	E-value
NZ_CP040440.1\|WP_005411059.1\|4205856_4206240_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	5.08321e-17
NZ_CP040440.1\|WP_005411064.1\|4210751_4212929_-\|tail-specific-protease	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0
NZ_CP040440.1\|WP_005411077.1\|4227941_4228988_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP040440.1\|WP_049397130.1\|4226554_4227820_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	3.30308e-87
NZ_CP040440.1\|WP_049397136.1\|4218242_4219520_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	2.55375e-51
NZ_CP040440.1\|WP_033834551.1\|4221653_4222748_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.06609e-141
NZ_CP040440.1\|WP_049397133.1\|4223993_4226069_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP040440.1\|WP_005411061.1\|4207743_4208649_-\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_CP040440.1\|WP_049397139.1\|4203804_4205622_-\|PAS-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	5.42392e-57
NZ_CP040440.1\|WP_005411078.1\|4229271_4230210_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	1.16177e-116
NZ_CP040440.1\|WP_005411065.1\|4213208_4214219_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_CP040440.1\|WP_024957042.1\|4206410_4207454_+\|oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	7.47061e-133
NZ_CP040440.1\|WP_005411067.1\|4214934_4215213_-\|DUF493-family-protein	gnl\|CDD\|179161	PRK00907, PRK00907, hypothetical protein; Provisional.	1.56476e-63
NZ_CP040440.1\|WP_005411069.1\|4216924_4218142_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	7.03159e-149
NZ_CP040440.1\|WP_012481291.1\|4219516_4220662_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.42047e-138
NZ_CP040440.1\|WP_005411066.1\|4214236_4214947_-\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	8.74975e-140
NZ_CP040440.1\|WP_049397132.1\|4226072_4226558_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	2.23386e-30
NZ_CP040440.1\|WP_049397134.1\|4222884_4223997_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.54301e-144
NZ_CP040440.1\|WP_005411063.1\|4209912_4210503_-\|DUF2242-domain-containing-protein	gnl\|CDD\|378349	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242). This domain is found in various hypothetical bacterial proteins, and has no known function.	6.04556e-62

>NZ_CP040440.1|WP_005411067.1|4214934_4215213_-|DUF493-family-protein
MEIKSDNPDHGFQFPGQFELSAMGPANRGLEHELPRLLLAAGIDVVNERISWKHSSNGKYVSVRIVFKAESREQYDLAHQALRDHPEVKWTL
>NZ_CP040440.1|WP_005411066.1|4214236_4214947_-|lipoyl(octanoyl)-transferase-LipB
MDAVADSCPAEAAPEDRAPRPALVRDLGRQAYEPVWRAMQRFTDQRSDTDADELWVVEHDPVFTLGQAGKDEHVLAPGDIPVLHVDRGGQVTYHGPGQIVVYPLLRLPRLGIGVRDYVCRIEQAIIDTLGEWNIGAERREGAPGVYVGGAKIAALGIRVRRGCTFHGLAFNVAMDLEPFHRINPCGYQGLQVTSVVDLGGPSGMEAVKPVLLDHLARQFGLLLQHTPELPDLSAAA
>NZ_CP040440.1|WP_005411065.1|4213208_4214219_-|lipoyl-synthase
MTETTARSIPLQIVQGDSPSAAPLQAGVKQLGGDKINRSPVQFADAPVLRKPSWIRVRIPSGNAVQNLKAKLRENRLVTVCEEASCPNIHECFGHGTATFMILGEVCTRRCSFCDVAHGRPKPPDANEPASLGQTVADMGLKYVVVTSVDRDDLRDGGAQHFVDCITAIREKSPGTRIEVLTPDFRGKGRMERALEILAQNPPDVFNHNIETVPDLYRNVRPGADYQWSLNLLKNFKAQHPDVPTKSGIMLGLGEDFEQIKATLRDLRAHDVDMITIGQYLQPTAHHHPVLKYWTPEDYKALEDYGYELGFSHVASGPMVRSSYHADVQAKGAGVS
>NZ_CP040440.1|WP_005411064.1|4210751_4212929_-|tail-specific-protease
MKFKAPAFLMALALVAPLALAAKADSPALPAAATADQVTTSKLVYGLLSDSRYAYRPRALDEATSKDVFKRYLETLDGGKQYFTQADVARFAPFEANIASAIRGGELEPAFQVFAVYKQRVGERVAYARKLLKQEPDFTTDERFEYDRKKVPWAASSAELDELWRKSVKNDWLRLKLAGKKPDDIRKTLDKRYATLEKSVNELKGEDVFQFFMNSYTSAVDPHTDYFTPRTAENFNQAMSLSLEGIGAQLQRQDDVVVIREIIAGGPAAVDGTLKPGDRIVGVGQGKSGLVEDVIGWRIDDVVAKIRGAKDTQVKLEFIPAAEGADGKHHTLVLTRQKVRLAEQAAKGETMTIPAANGEPARRIGVIKLPTFYQDFEGRRRNAADYASATRDVAKLLAGFKNDKLDGVVLDLRNNGGGSLDEAIELTGLFIEQGPVVQVRESGGRVTVNSDRNQGVAWDGPLAVLINRGSASASEIFAGAIQDYGRGLVIGETSFGKGTVQNIVDLDRWPSGETQRFGQVKLTIAQFFRISGSSTQHKGVVPDLAFPASVDATEFGESTYDNALPWTRIAAVPHTQYGNFAPLLPKLETRHDARIATDKEFQWWNEDVQQFRTEAAKKYISLNEATRRAERERQDTQRKERQVQRKELGLALDPLADDSSDDGLTGNERDIVKDAAREKAAEKRPDPLLRESASILADAVNLLANDRPLSAQVLPQSTGAGRWAD
>NZ_CP040440.1|WP_005411063.1|4209912_4210503_-|DUF2242-domain-containing-protein
MRASRLSSVAVALASALILSACGGRAADSTLLRESFDSGDTFSRTVDGRPGDACEAARRTLLSQGYAIARSDAAQVEGNKNFQPREDDHEQLVLRISCAPRGSQTLVFVSAVQDRYALKKSPTSASVGVGALGSVSLPFGSNDDSLVKVASSTVTDAEFYRRFFQRLQQYLPAEAGKPVPPVATTPEPAPASTDQD
>NZ_CP040440.1|WP_049397138.1|4208653_4209895_-|hypothetical-protein
MGVALLLPALGAAATPLDCTQGLLQRLGWHFETRAIGAPQVHGGPVCTRASLPEAQAAGDLRVQWPADMPAAARKALLQQVLDDPATVCAYAFQLGAATQRAAAALQGNAGFRFSGLQLGWIGFGLHGAHAQGWQRTRSFGRGFVPIKGNSQALQAFYSGNVRAECGVGRQVAQLATQRELYGDAAFDAGFSAEELSIGTFLALHDTDSILLGAHAGDYFADGKAVRTSAMGRQAFVGVPGFIEHVYDKGTLDDLSNQAENFVVVSVGEEAAQALAAHGGLAWYDQRNAELWALAQDIPRIGRRYFERLLFERDPDLRARLEPRYHATLARMDRLLDDPFYQQFVIYVHPRGIRPIGYHIARLLDRNPRTPFSIDLAVHNLHTTLYRRWREAQQRHCSATGRPGSLTLDPNRR
>NZ_CP040440.1|WP_005411061.1|4207743_4208649_-|decarboxylating-6-phosphogluconate-dehydrogenase
MDIAMIGLGRMGANMAQRLHRGGHRVVGYDPGEGARQRAAEAGLEVVDSLAAAVAALPVPRVVWLMVPAGETVDQTLGQLTPHLAEGDIVIDGGNSNYQDSIRRAKALAEDDLGYVDCGTSGGVWGLQEGYSLMVGGEAAVVEQIAPLLRTLAPAEDRGWGRVGPSGAGHFTKMVHNGIEYGMMQAYAEGFALMERKQEMELDLAQVAEVWRHGSVVRSWLLDLSTEALKRNPSLDGIAPYVEDSGEGRWTVAEAIALDVPAPVITLSLLERLRSRESNSFTDRLLSAMRNEFGGHAIKKS
>NZ_CP040440.1|WP_024957042.1|4206410_4207454_+|oxidoreductase
MRPDLQLALIGYGLAGRVFHAPLIQHTPGLVLHSIVSSQRDTLLRAFSDVHVRATPQEVFDDPAVDAVVIATPNEQHAPLAIAALAAGKHVLVDKPFALDVAEAEAVLAAARDAGRIATVFQNRRFDADFLTLQALLADGTLGDIAECHVHFDRYRPQVRDRWREQDGPGSGLWYDLGPHLLDQMLVLFGWPEAIDADLAVQRDGGSAIDYFHAVLHYPRHRAIVHSGSLVAAPTPHFSVHGSKASWIKHGLDVQEAQLRRGVAPGAPGWGIDPRHGELVRCDAEDNVQRGTVDNLPGDYRRLYAQFAAAMHGDGEATVDPVQALQLMRLLQAGMDSAREGRRIALG
>NZ_CP040440.1|WP_005411059.1|4205856_4206240_-|BON-domain-containing-protein
MSNTTRTLIASALTLGLALSSSAAFAKDPAAKSPPTSAHPATHADRHDSNEPVTDTWITTKVKADLLASSNVPGTEIKVETVNGVVSLSGAVASQAEKDKAVTTAKGIKGVTRVDAAALKVSAAAKR
>NZ_CP040440.1|WP_049397139.1|4203804_4205622_-|PAS-domain-containing-protein
MALVFSDDIWDRWRLPALALAAAAIIVVPWLTLRKLQQDNEQAMAWVNHTQAVGVALQQLQADVRDVESAALTLSKGVDAPGLRERMAAANDIPGRLAELGRMTRDNPDQLIRIGRIESMLEGRMALARELARSEPNSDQRELVKDLSTRYPIRGLVEELQASEQQLLTLRAEQAARQRKQTELVSWSSLVIQLGLLGLVLWLLQRQIGRRLHAERQSLRSAARAASVLQTVREPIVLLDRDLRVQLHNTAFAELYGLQDERADGLLLESVGDGAWKDAVVRQRLSDVLLRGRELWDFEHEQRTADGMARYMLLNARRMPLPDTDDEVVLLTVSDVTMQRAVQLRVEELNRQLEGKVAQVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLSRHLGDAADDKSRHYLDVISSSARRMAALIDDLLVYSRLGRAAMRQQAVDMQSLVADTRAMLDSNLQAEAENSGHVHQVEWSIAPLPIVVGDENMIRQVWLNLLGNAVKYSGNREPAKIRVDYQPQPDGGHQFTVSDNGAGFDMAYAGKLFGVFQRLHKASDYPGTGIGLASVRRVLTRHGGRIWAEAEPDVGATFHFYLPPAIDADKQGPSA
>NZ_CP040440.1|WP_005411069.1|4216924_4218142_-|D-alanyl-D-alanine-carboxypeptidase
MNFRSAATALAATLVVGLASAQTPLPTPATPAPAAAAAPATVATPPAPAPSVSKAWVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNWGFRFFETHRLYEPGKAVAEHKVWKGTTDKVQLGVAQPMLVSVPRGRYNDLKPSIDVPKTLEAPFTAGQQIGTVKVTLDGKVIAEAPLVAVAAVEQAGFFKRLWDSFWMWWESE
>NZ_CP040440.1|WP_049397136.1|4218242_4219520_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNIRWLVPSLIVFALAACSSAPKQPATAGHGGKSSGTVVQGRGSRPAHCPEGSPYAAAKEDLSTRGNYTAGGLYKPGVRDSTPDYIPNVACIPEPEVTAEERSAIGNKSPYVVLGKSYKVLDDTHDYVERGTASYYGAKFHGRLTSNREVYDMYQFTAAHKTLPLPSFARVTNLDNGESVIVRVNDRGPFHDGRVVDLSYAAAVRLGITQRGTGNVEVRALQPGESNLMAQKPSRRERRAAEAAAATAVASARPAPPRASTDSDIDRLVNRLPTDGAPARGQPATTRGVASTAPDVAVSSLPPIAPVVRNSAPAPAVVASTAPRAVAPAPAPAPVRAAAAAPSLSQQMVGAVMVQVASFSNRDNANRAMGQLSAAGIVGATISDIAAGGRTLFRLRVPASDHASAAELVGRIAGLGLGSPQIVKD
>NZ_CP040440.1|WP_012481291.1|4219516_4220662_-|lytic-murein-transglycosylase-B
MIRRTLACMLTLGLVACATQPKSPPSSPQASSTPRQPATKAHGPAEAAPEATAATAPPVDLTPVPFEVARARFIADTAKRYGLKPEQISSVLDQAQVRQPIIAAMSRPAERVKPWNEYRPMFISKARIDGGRAFLAEHRAELDRVQQRTGVPAEVIVAIIGVETSYGKNAGSHRVLDALYTLAFYYPRSGDPAKLEREVRRELFFRDELAKLFELGREEKLDITTLKGSYAGAMGMGQFMPSSYLDYAVDGNGDGRRDLFNSYDDVFSSIANYFVKKGGWVRGGQVAVPATLAPGREEFNPTEWMPTWSLADLAQRGYQPSTPVQPGATATPITLEGSTGKQYWLGFQNYYAITRYNLSKMYAMAVFQLSQAIAGQELPPA
>NZ_CP040440.1|WP_033834551.1|4221653_4222748_-|rod-shape-determining-protein-RodA
MEWKRLLGGCREVARTIDLPLLIALLILMGAGLAVLHSVSGPVAGQAARFAGGLASMWLLSRVSLLRLRAWTPAIYALSMLPLMAVYVIGTGKYGQRWLNLGVFYLQPSELLKLSLPLMMAWYLHRQPLPPSPRTVLTTTVLIGVPAVLILMQPNLGTATLVTASGVFALLLAGLHWGWVATGATGLAVAAPLAWFGLLRQYQKDRVLTFLDPSADPLGTGWNILQSRIAIGSGGWDGRGWGQGTQATLDFLPEYTTDFAFSVLAEEFGWIGVATVFALYLFVVGRCLWIAVHARDTHARLLAGSLGLAFFVYVLVNGGMISGLLPVVGIPMPLISYGGTSAVSLLAGIGLVMAVRGHRPVHGG
>NZ_CP040440.1|WP_049397134.1|4222884_4223997_-|rod-shape-determining-protein-RodA
MKVFLRWAGDMLRRFFSTLDWVFCLALGALMVIGLATLKSAGGDGLVMAQGARFAVGMAALWGISRVPILRIRSATPMIYAISMIPLLAVFVLGTGKYGRQWLDLKFFYLQPAELLKVSLPMMVAWYLHKMPLPPRFNTVLVALIIIGVPTGLVMLQPDFGTGVLIAASGVFVLLLAGLPWWWVGLGVGGVAAVAPVAWFWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGEGSQSHLNFIPEQTTDFAFSVLSEEFGWMGVALVLTLYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVRSHNPVHGGYG
>NZ_CP040440.1|WP_049397133.1|4223993_4226069_-|penicillin-binding-protein-2
MIPRRQVKNPHAEAEQFRRRAALGFLGVLVCLLGLGGWYFKLQVLDHDVYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDVTPDKVKDMDATLEGLAKIISISPEELEAFNKSRKARRKFLPVTLKLRMSDEEMARFAVDRWRFPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEILGEGNAALTHIGKSGLERYYEQQLRGKVGYEQVETNVQGRAIRTIGRVAAQSGADLRLSIDADLQRAMVAAFGDQEGSAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHADFKALNENPSRPQFNRLVLGGVAPGSTLKPLIGLAGLDSGVRRPEDKVLSTGMFYLPGTSRGWGDAHRGGHGWTDLRKSIAESVNTYYYKLALDLGIERFDHYMEYYGFGQPTGIDLTGEIGGILPSPAYKRKTRKEAWYPGDTVNISIGQGDWKVTPLQLARGVSALADGQLRTPHLVIQQRDGFDSDWTAAPPGESKPVSPNPNNVQAVREGMMATMRPGGSGWRVAVGAPYVMAGKTGTAQVISRKGTAAVNPKSLPMHLRHRALFVGFAPVENPVIAIAVAVEGGGYGGSAAAPIARKVFDAYLLGKMPEGMQPLDSERGTTAIGATAFDNEDAGARQAGDLAAAQLGEHLVQVGAPAPEPAPAPQPGTPAAAALPATPRPTVAEPAR
>NZ_CP040440.1|WP_049397132.1|4226072_4226558_-|rod-shape-determining-protein-MreD
MSRLRDNPWVLPASLVVALLLGLLPLPALLQPLRPDWLALVLAYWVIETPERVGLGIAFASGVVADLLYGGVLGEQALRLVMLAFILQRFRARIRFFPMSQQMLAIGGLLFNDRIVSALVHILVGEPTLPWSYWWAPLLGMGLWPLVFVLLDAVRFGKRGR
>NZ_CP040440.1|WP_049397130.1|4226554_4227820_-|rod-shape-determining-protein-MreC
MPPYAGPPVASRSGDAASPLRLLAYLALAITLIVLDDQAGWLARLREQANSLVQPVWALAGLPGKLGNQVKDSAASHTQLVTENRELRNQLLLANARLTRLQTAALDNAQLRELLNVAERSGLDVQLAPILDIDLDPVKQRLVLDAGSREGVHVGQAVIDAGGLMGQVISVTGGTSTVLLLTDPDHAVPVTVARNGVRLIVYGRGDTLELRDIPLSAGVEVGDEIVTSGLGGRFPAGFPVGTITGLRPDDTHAFLVGELKPAAQLDRGRDVLLLRPGAAIRIPPELRLQLEETTPGGPATGATVPAGAAPATTTPAPVSSPVVPAAGRQQPSSQTRTVAPASSLDPAAPVVPAAGRQQPSSQTRTVAPASSLDPAAPVVPAAGRQQPSSQTRTVAPASSLDPAAPVVPAAGRQPTTPEAQR
>NZ_CP040440.1|WP_005411077.1|4227941_4228988_-|rod-shape-determining-protein
MFKKLRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQDRAIGGTRSVAAVGAEAKQMLGRTPGHITTIRPMKDGVIADFTYTEAMLKHFIKKVHKSRVLRPSPRVLVCVPAGSTQVERRAIKESAEEAGARDVYLIEEPMAAAIGAGMPVTEARGSMVIDIGGGTTEVAVISLNGIVYSASVRIGGDRFDESITNYVRRNHGMLIGEATAERIKVELGCAYPQAEVQELEISGRNLAEGVPKMIKISSNEVLEALHEPLSGIVSAVKLALEQTPPELCADVAERGIVLTGGGALLRDLDRLISEETGLHVQVADDPLTCVARGGGRALELVDMHGNEFFAPE
>NZ_CP040440.1|WP_005411078.1|4229271_4230210_+|carbohydrate-kinase-family-protein
MSALICGSLAFDTIMVFPDQFKNHILPDKVHILNVSFLVPRMRREFGGCAGNIAYNLHLLGGQPIPMGTVGSDFGPYREYFEGLGIDLSRVRVIDELFTPQAFITTDHDNNQITAFHPGAMMRSYENHVRGVPGVTLGLVGPDGREGMIQNAQEFHEDGIPFIFDPGQAMPLFNGPELRAFIDQADYVVVNDYESNLLQERTGWDEKEIVSRVKAYITTRGPKGAVIHTPEKSYDIPPAHERRVVDPTGCGDAFRAGLIYGIQKGYDWLTIGRMGNLMGALKVEHPGTQNQRFTFDEFNEQFKQQFGYALGA

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Crispr_ID: NZ_CP040440_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040440_10

4642709-4642812

Orphan

Consensus_repeat	Method
GTGTGCCAACCAAGGTTGGCACCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040440_10

>merge|NZ_CP040440|10|4642709-4642812|CRISPRCasFinder
GTGTGCCAACCAAGGTTGGCACCTATCAGGGTGAGTGGGGCCTGGTAGAGGCCGACCTTGGTCGGCGCTTGCCGATTGCGTGTGCCAACCAAGGTTGGCACCTA

>NZ_CP040440|10|9|4642709-4642812|CRISPRCasFinder
GTGTGCCAACCAAGGTTGGCACCTA	TCAGGGTGAGTGGGGCCTGGTAGAGGCCGACCTTGGTCGGCGCTTGCCGATTGC
GTGTGCCAACCAAGGTTGGCACCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040440.1\|WP_044571475.1\|4645942_4646383_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226695
NZ_CP040440.1\|WP_049396956.1\|4630575_4631379_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_154344452.1\|4642858_4643692_-\|sugar-phosphatase	unknown	unknown	gnl\|CDD\|182509
NZ_CP040440.1\|WP_012481492.1\|4644639_4645950_-\|sorbosone-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|225044
NZ_CP040440.1\|WP_012481496.1\|4649598_4650279_-\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
NZ_CP040440.1\|WP_012481498.1\|4650624_4651260_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|131889
NZ_CP040440.1\|WP_049396580.1\|4637974_4638544_-\|heteromeric-transposase-endonuclease-subunit-TnsA	unknown	unknown	gnl\|CDD\|380186
NZ_CP040440.1\|WP_049396983.1\|4629289_4629778_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_152905473.1\|4631434_4632238_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_049396582.1\|4639598_4639985_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_049396585.1\|4640093_4642412_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP040440.1\|WP_012481497.1\|4650290_4650623_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|131894
NZ_CP040440.1\|WP_005411470.1\|4647150_4648917_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173789
NZ_CP040440.1\|WP_080356393.1\|4632905_4633940_-\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NZ_CP040440.1\|WP_154344453.1\|4651256_4653233_-\|cytochrome-o-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131890
NZ_CP040440.1\|WP_049396578.1\|4636066_4637971_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|378147
NZ_CP040440.1\|WP_154344451.1\|4635152_4636067_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|377533
NZ_CP040440.1\|WP_088610767.1\|4634030_4635202_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP040440.1\|WP_005414757.1\|4648916_4649495_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040440.1\|WP_012481491.1\|4643841_4644492_+\|exopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|368723

Protein	Function_ID	Function_description	E-value
NZ_CP040440.1\|WP_012481492.1\|4644639_4645950_-\|sorbosone-dehydrogenase-family-protein	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	9.94317e-97
NZ_CP040440.1\|WP_012481496.1\|4649598_4650279_-\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	4.57315e-51
NZ_CP040440.1\|WP_012481498.1\|4650624_4651260_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	gnl\|CDD\|131889	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	3.82156e-101
NZ_CP040440.1\|WP_049396580.1\|4637974_4638544_-\|heteromeric-transposase-endonuclease-subunit-TnsA	gnl\|CDD\|380186	NF033179, TnsA_like_Actin, TnsA-like heteromeric transposase endonuclease subunit. The transposase of transposon Tn7 contains multiple subunit. Members of this family are largely restricted to the Actinobacteria, resemble the endonuclease subunit TsnA of the multimeric transposase of Tn7 and its relatives, and occur in genomic neighborhoods that suggest a similar role in transposition.	9.26281e-15
NZ_CP040440.1\|WP_044571475.1\|4645942_4646383_-\|hypothetical-protein	gnl\|CDD\|226695	COG4244, COG4244, Predicted membrane protein [Function unknown].	1.07238e-11
NZ_CP040440.1\|WP_154344452.1\|4642858_4643692_-\|sugar-phosphatase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	0
NZ_CP040440.1\|WP_049396585.1\|4640093_4642412_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	6.67003e-23
NZ_CP040440.1\|WP_012481497.1\|4650290_4650623_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|131894	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	1.65634e-34
NZ_CP040440.1\|WP_012481491.1\|4643841_4644492_+\|exopolysaccharide-biosynthesis-protein	gnl\|CDD\|368723	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD. Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion.	1.72196e-42
NZ_CP040440.1\|WP_080356393.1\|4632905_4633940_-\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	2.00012e-22
NZ_CP040440.1\|WP_154344453.1\|4651256_4653233_-\|cytochrome-o-ubiquinol-oxidase-subunit-I	gnl\|CDD\|131890	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	0
NZ_CP040440.1\|WP_049396578.1\|4636066_4637971_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	3.49151e-12
NZ_CP040440.1\|WP_154344451.1\|4635152_4636067_-\|AAA-family-ATPase	gnl\|CDD\|377533	pfam05621, TniB, Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.	7.44065e-56
NZ_CP040440.1\|WP_088610767.1\|4634030_4635202_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.24813e-64
NZ_CP040440.1\|WP_005411470.1\|4647150_4648917_+\|S8-family-serine-peptidase	gnl\|CDD\|173789	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.	2.41377e-105

>NZ_CP040440.1|WP_049396585.1|4640093_4642412_-|TonB-dependent-receptor
MNTPPTTRLALAIIAAITAPAYAAETHDAAHDSPTTLNALQVIATPRGAAVAPTQVVGPNRYIIKAEDLDAMVTGNNGLAMLKQVPGASYTATDGLGLDISATSLFVRGFRMNEMGITFEGVPLNDNGFLSLTGTSVVNVGVPDGIGAITVSPGGAPVSVFSSSVNGGSLEYRLRELQDTPSLRVKQGVGSNNTLVTTVSGQSGQLGEHGPKVLVDLQRVSADKYQGEGTQNFLRGDLKLQQDVAWGDFTVFLFDSKAKVWGYNNISFDMIRKLGWKADIFYPDYAWAYYVASPENAGNSCGAYTCGELSELIPYDTGQSTRDRVSSISHRFQISPALSGNVQLYNANSHTQATLTDPTVPSPNGAPFSEQVQTPRLNRLGGMLNLQFETGAHTFTAGFWQEKSKAAAKTEWYQQPLLGEGPPLKATGPFDVYGPAFKTDNASSWVTRSRQFYLQDDIVLNDTLKLGVGFKAVDFRTRGGGLGDAKDRPVNGTLRAKSNFLPHVSLFWSPTESTDAFIDLANTMNGYRAAQRGNIGYTASAWTITDQEEFDRVAGTLRPEKNWNLTVGASHRFDRLTITGDVFYNDIRNRLLSAAIGTQFAQINTVRLMPKMHVIGADLGITADLTDHLQFYQGVAVARSYYDSDFVVGDTVYPIKGNAQPGYPQISLVSDLSAHFGDWRFGATSTSYLRQPFTYENDIRVPTFWQVNTYAAYRFGADSAVPGLELRLDVSNLFNRHNIGTATIAGSSFSGDYQTLQRSAPRQLMFSTSMAF
>NZ_CP040440.1|WP_049396582.1|4639598_4639985_-|hypothetical-protein
MLLGHPVGMAQYNPRTPLFGIRGPGRPRKALSVAPVIDLQAEYQFWHVYERVVRPLPGGGLRLAWLVCQKVYRDRWQHPEDSDEAALSRVLFGGNMTADRASELAELHALVSRRVALLAKRGRVDSAA
>NZ_CP040440.1|WP_049396580.1|4637974_4638544_-|heteromeric-transposase-endonuclease-subunit-TnsA
MAGFESSLERDLLLILDFDRTVLSVKEQPFSLTHIQDASVRRYTPDVMAEYDRDALPTIVYEVKPIEKLRADWASLRPGFKAAVAHCRLRDWQFKIVTERHIRTPYLANAKFLRRYRDLPPLLVRQAQLRYTASAVGPTTPQGLLAAAYWPKEEQAQAIPALWQMVAAGEFNIDLTKPLSMRMPIQLAE
>NZ_CP040440.1|WP_049396578.1|4636066_4637971_-|DDE-type-integrase/transposase/recombinase
MVSSNFINISPGVEVMVGQRRYRITRSLDINSVLAEDVETAKIARLRIETMSRVLEAEEGDETPNFSVHHFSDDLWAVAQRRFEAIKPLLDNPRRSRSSVAAAALAAGVNTSTLYKWLALYHDHQHVAALVPTRRGRNRGARFLQADQELVIASVIEDFYLDRQKPSPKSVVDEVTRRCRRAKIDAPHPNTVRNRLADIRPATALRRRGQKDRARDRYEPIRGSFPGADFPLAVVQIDHTPLDVIVVDEEHRKPIGRPYLTLAIDVFSRAIVGLYLTLDAPSATSVAMCISHAMNTKNEYLRLLGVEGDWPVWGQIGTLHADNAREFKCKAVNRGCEANQIIMQWRPVKKPNYGGHIERYMGVVATEMKKVPGATFSNIKERDNYDSEKEASLTLREVEHYLVNFIVNNYHQRVHSQLDAAPIKVWEDAILGDEMPGVGRMLPADPDRVRMDFLPYFQATVQRYGVRIENLFYYDPILDRHIGATELDNPKLKRKFIFARDPRNISEVYFLDPNTGRYISVPYRNVGHPAISAGELREAKKRIKADGKSAVDEERIFQSIESNRKLVEESTAKSKAARRQAAKAPKGKPNATDAQDARTSNAPPPPPPRQPAPKAPDRNIFSQALEVLEIGEIH
>NZ_CP040440.1|WP_154344451.1|4635152_4636067_-|AAA-family-ATPase
MSSFPHLHPQVAAYMGGSNEERIAVSRKDRWIGYPKAMTVLDELDQLIVYPSTQRPPCRLIVARGDNGKTALLRQFQLRHPAVQLGDGGMSVPVLRVNMPAQPDLSQLWSEVLTRCATTHRRGDPASAKYAMVVSVLRVLKVRVLAIDEFNDVALARKGTSDVLAGIRKLSNELNLSIVAAGTEAAVHALAFDAQMRSRFSALSMPKWAMDLPYLNFLNTYERLLPLAKPSNLPGEELAPVLFAAGGEAIGGTVTLLRNAAALAIKSGEERITMVDRPAFRRHPVAIIDGNDRGVYGQQQAVHG
>NZ_CP040440.1|WP_088610767.1|4634030_4635202_-|IS3-family-transposase
MAMTEVFMGNSKQYTDEFRAEAVKQVIERGFTVVDVASRIGIPKHTLYGWVQAARKATPASGAAAAPTDSAEIRRLKAELRRVTEERDIPKKSRRVLCQGVRAKYAFMRAHVREFRLVAMCRVLGVQRSGYYAWLRHGASAREREDQRLLGLIKHHWLASGTVYGYRKITLDLREAGERCSRHRVLRLMKAEGLRAQVGYGRKPRHRGGPVGLVTNVLNRDFTPEAPNKVWVTDITYIRTYEGWLFLAAVMDLYSRQIVGWATAPTMTSDLVLQALVAAAWRRKPGPGVLVHSDQGCQFTSSDWQSFLKAHRMVPSMSRRGNCHDNAVAESFFSVLKKERIKRRIYPTRAMAASDVFDYIEMFYNPIRRHGSAGGVSPVEFERRYAQSGN
>NZ_CP040440.1|WP_080356393.1|4632905_4633940_-|TniQ-family-protein
MRIVWPPQVPDELLSSYLARVSIAYGTSPQKLMALYAPGFQVWTRDIDVCAPEGLLSCLTDPSGKSLQMLYGLTLVGWNEVTKRRCEPPRGVYHWINSMGIYHRTRLRHGLTFCPECLEQNGAYLRPWRLSFWTVCPLHQRLLQDGCPNCGVVIQPHRHGFDLRMCWNCNRSLTTATSPVLDVLPVQSLLFRCLINPTRDFEFSGHTCSGSEALWGADTLLSALKPLWRGLGLASERGPRIEMRRVQERYTDMRMLDHLLSLGPAGLLRLAQSMRVTQRCFRQQMPAWIGGIAANLPEGRARRAVSSNRSELRSVGEAQRRRLGGWREMRAAVLLKMTGRSNEY
>NZ_CP040440.1|WP_152905473.1|4631434_4632238_-|hypothetical-protein
MASLYRAFGEWLLVKNVATGALPKVAVRAVSFFRAIDLDGDTHQPIVAADLLRIFDSKQLRAYLNVTRFICERYGFQIDEKARAAARDQALIERGLQESASKPWAGYLTDYKAWLMGRPSRTQAQYLRTAQAFCESIELSGPFTQEHLVKYLVSAPGSRANLSVWVSFVRTQYSWTVTMPPKLAQKPALKRDALTLVDLLQRVSVPGSATDEDLAATVALVYGFDLGALRRQVVGVTDTGDLNTRDGVVVVQNELKEIVAEWARRVF
>NZ_CP040440.1|WP_049396956.1|4630575_4631379_+|hypothetical-protein
MDSFAPPLTSQCCLCGSTQALSGEHKIKASALRSIFGDRKTVIVREGGRSRHAQSSKSKAYHYEARVCEPCNSARTRPADLAFDSFNAAASELFHRGSDPANVFDDPRFDAESGELYLDVFRYFAKLMCCHLAEMSAPYLQGLADFAIGSSNHNVIYLGVGVDVAYQRLQSEAVSTAYAAHGGLVVLADKTTRELTSFYSTLTIGPVRYCYYVRYNELGLQVLMNDYPEFYAWCSRRIAEAIITPLSANDRELLGLTAEPQSENLPP
>NZ_CP040440.1|WP_049396983.1|4629289_4629778_-|hypothetical-protein
MSGEVDSDDASLKARSPAQKILADAAAQRDLLAAQWLSAEEVGARLDARSRNSGHRASYLRSEGRLLGVYVTHPVPSYRYPPWQFHPDGLPVSHLGEILALLRDLGPFQREVDGLRRTTGWGEVEWFLSPHALLDGAAPAERLVGDPASVLRAAKVEFDSGT
>NZ_CP040440.1|WP_154344452.1|4642858_4643692_-|sugar-phosphatase
MDMGRRQSTIELVAIDMDGTLLDPAHRLTARVRQAIAQARALGVHIVLTSGRPVPGLAPYLHELGITGNDDYCIACNGGLVQRVGTRETVVEYPLSFDDFLFCEQVAREVGVHFQALDSQRMYTPNQDISYYTVADSHLSRMPLSYRRVEDMDPSMSFIKLMMIDEPEVLDAAIARLPSELTERFAVLKSAPYFLEVFDHRAGKGPSLQQLAEHLGIDRANVMAIGDQENDLTMLQYAGTSVAMGNAIDAVKAVARFETSSNADDGVARAIERFVLQ
>NZ_CP040440.1|WP_012481491.1|4643841_4644492_+|exopolysaccharide-biosynthesis-protein
MTYRAPETDDSAPLAQQIEQMIDELPGDQVRVGTLLSALGDEGLLLIVILLSAIFIIPVSIPGLSTVFGASILLIGLSRVRNRPLWVPQKLARREIATDKLKANLGRALKWVHRMERLSRPMRLAVMVRSKKMMRLNNLMLVFATLLLMAPAGPIPFSNTLPALALMSFAIGFIQRDGAAVAAGYGFVVATVVYFGVLLGGMGFAAESVFSGFRAR
>NZ_CP040440.1|WP_012481492.1|4644639_4645950_-|sorbosone-dehydrogenase-family-protein
MAKHILPTVAALALAAALSACAGKAEYHPADQSGPQPPLPKPANFLMPPMQVPKGVGWADGQTPTVAEGLKIERIAANLQHPRRLLTLPNGDVLVVEGNGPGEEPVTTPKQWIAGKVKARSGKAGKGGNRVTLLRRTPGTNTWTQHVYIEGLHSPFGIQLIGDTLYVANTGNIVQYHYVPGETRMSDKGREFTDLPSTINHHWTKELLASRDGRKLYVGVGSNSNITENGLAVEYRRAVVLEVDVATRGSRIFASGIRNPTGLDWEPSTGTLWAVANERDEIGADLVPDYLTSVKEDGFYGWPYSYYGQHVDERVQPQRPDLVAKAITPDYAIGSHVAPLGLLFYTGQALPAQYHGGAFIGEHGSWDRSPLSGYEVVYVPFKDGKPTGRPQTVVSGFASKDEKTLMGAPVGMAMDAEGALLVADDVGDVVWRVSAK
>NZ_CP040440.1|WP_044571475.1|4645942_4646383_-|hypothetical-protein
MVNPLAQAHRGLGTTLFSLLNPIPFGFFVGALIFDAIYLNSAEVMWGKAAAWLITFGLMIAILPRLINLFAVWRRNGTATRIDRIDFFLNLVAVVLAIWNAFVHSRDAYAVAVPGTILSALTVALIALGLILLSLQPPVLQGGRHG
>NZ_CP040440.1|WP_005411470.1|4647150_4648917_+|S8-family-serine-peptidase
MKRHTQRSAPPRSARLALATALVLGSLAATAQAQQADPLAGIQWHLLNTGQTVPADTLPVAGNDLNVDGLFRNGIRGQGVTIAIVDDGLQIAHPDLAANVAAVAGKNFTNGSNNPTPTNPDVDNHGTMVGGIAGAVGANNLGVRGVAPAATLKGFNPISRSALGNQQSNIEYAWWDGAESADVQVFNNSWGAGPGNPNLPLAYSENTIRSYEQALSGTRGGRGGIYVKSAGNNFNNASISQTQDVCTTDTKNRNTGCVPAGRDPRNNLFNVITVGAVRADGVRSSYSSTGSALWVSAFGGEYGLQAQYAPGLVARAYDPAIVTTDVTGCAQGSNKNTNRQNTLDSNLSAIDSTCNYTAKMNGTSASAPMVSGVAALVLEANPNLSYRDVKYILATTATRNHPNQPAVTLADGRTLVPGWTVNAAGRAYSNWYGFGVVNAARAVQVAENFQSLGALVDSGWRNTTRTVAIGNTSAAAARLTFQLANGARNIESVQLGFRVNHRNTRQLQFVLVSPSGTRSVVQPAFTAIGSGTGGAQSNFTSWDLLSSNAFLDENASGTWTLEVTDMGQAATAASRGNLEFFKIRVLGH
>NZ_CP040440.1|WP_005414757.1|4648916_4649495_+|hypothetical-protein
MMKTTILLSTLAFAAMTSPAWAQSSGQTPPARTLSTVDAQELKASATGRSFDVGGTRFQLSPSTTVKQASGGQFTITPQAAATTSSRTKRSLDGAAAAPADAGAGKFAAAVSRDGAPVVATSRVKVFFTDAASAQRAATATGGTVVKVSKASGQAIVEYPSVNAALDATTRLLSTAGIRATEPDVVQWEETK
>NZ_CP040440.1|WP_012481496.1|4649598_4650279_-|SCO-family-protein
MKGIAFPQRGLRLVAGLLLGLLAGCSAQSRMDFYSKDIACEELGQQWSMPDSHGTVRGPKDLQGQVTYLFFGFTSCPDVCPTTMVELSQVKHLMGKDADQLQVVFVSVDPARDTPEVARTYVEAFDPRAIALVGNEAQLAAMASDFKAFYEKEPGQVPDTYTMSHIAGGYVFDRQGRLRLFAPYGMPVEKLFSDVQRLLLEPAHPAAGNDALASCSRKHSDTLAAR
>NZ_CP040440.1|WP_012481497.1|4650290_4650623_-|cytochrome-o-ubiquinol-oxidase-subunit-IV
MAHVETSRAGNAHGSTKSYLIGFVLCALLTVVPFALVMNPLLSRPLTLFLLVGFAVAQILVQLVYFLHMDRKSEGGWNLASFVFTLVILFIIVALSVWIIWSMHYHMMIN
>NZ_CP040440.1|WP_012481498.1|4650624_4651260_-|cytochrome-o-ubiquinol-oxidase-subunit-III
MNLLTRPELASDTQAREDHHEHDHGHEQGGMKVFGMWVYLMSDLVLFGSLFASYAVLSTAYAGGPTGKELFSLPFVMAETFLLLVSSITYGQAVLAMHRHDTSAVLRWLGVTFVLGASFIGMEIYEFSHLIHEGAGPSTSAYLSAFFALVATHGLHVASGLIWMAVVMHQVYRRGLTPTNITRVSCLSLFWHFLDLVWICVFTFVYLIGAF
>NZ_CP040440.1|WP_154344453.1|4651256_4653233_-|cytochrome-o-ubiquinol-oxidase-subunit-I
MLGKLTWEAVPLHEPIVVVTLAAMVLGGLALLGAVTYFKLWGPLWRDWFTTVDHKKIGIMYVVVALVMLVRGFADALMMRAQLAAAGPGSDGFLPPEHYDQIFTAHGVIMIFFVATPFVVGLMNIIVPLQIGARDMAFPFLNAFSFWIFVVGAALMMISLGVGEFAMTGWVAYPPLSGIEFSPGVGVDNYIWALQASGVGTLLTGVNLFITILRMRAPGMTLMKMPVFTWTVLVTSVIIIAAFPILTVALGALTLDRYLDFNFYTNTLGGNPMMYVNLVWAWGHPEVYILVLPAFGIFSEVTATFARKKLFGYKSMVGATLAIGILSFIVWLHHFFTMGSGASVNAFFGIMTMIIAIPTGVKIFTWLFTMYGGRVEFSVPMLWTIAFLVTFTIGGMTGVLLAIPGADFLLHNSLFLVAHFHNTIIGGALFGYLAGFAYWFPKVFGFTLNERLGKWSFACWVIGFYLAFMPLYMLGFMGMTRRMNQYDNPAWTPYLIAAFIGALFVFAGIILMLVQIYVSVRDRKRNLDLTGDPWNARTLEWATPSPPPFYNFAVVPKADELDAFHEAKKRGLPPPPKKYAPIHMPKNTGVPLILNIWILVLCFALVWHIWWMAAASFIAMIVTLIVRSYDEDVDYYVSSEEVARTEAANLAKLKEVRA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040440_8	8.1\|3990400\|31\|NZ_CP040440\|CRISPRCasFinder	3990400-3990430	31	NC_010879	Burkholderia glumae strain BGR1 plasmid pBGF2, complete sequence	12346-12376	8	0.742

1. spacer 8.1|3990400|31|NZ_CP040440|CRISPRCasFinder matches to NC_010879 (Burkholderia glumae strain BGR1 plasmid pBGF2, complete sequence) position: , mismatch: 8, identity: 0.742

cggtagatccgcgccatgcgtggatgggaaa	CRISPR spacer
cgtcagatccgcgccatccgcggatggctcg	Protospacer
** .************* **.******   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

223970 : 313425

Stenotrophomonas_phage(69.77%)

transposase,plate,terminase,tail,tRNA,holin,portal,head,integrase,capsid

attL 246639:246668|attR 299394:299423

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049396168.1\|223970_224915_-\|transposase	IS481-like element ISStma12 family transposase	NA	NA	NA	NA
WP_049397256.1\|225155_226601_+	ExeM/NucH family extracellular endonuclease	NA	NA	NA	NA
WP_049395828.1\|226902_227760_-	hypothetical protein	NA	NA	NA	NA
WP_012478798.1\|227803_228475_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_033836032.1\|228471_229572_+	cell division protein ZapE	NA	NA	NA	NA
WP_024956224.1\|230204_232607_+	ribonucleoside-diphosphate reductase subunit alpha	M4QQR4	Ostreococcus_lucimarinus_virus	2.2e-181	44.4
WP_005407669.1\|232750_233770_+	ribonucleotide-diphosphate reductase subunit beta	R4ZDG8	Choristoneura_biennis_entomopoxvirus	1.3e-45	34.6
WP_012478801.1\|234012_234393_+	hypothetical protein	NA	NA	NA	NA
WP_012478802.1\|234432_235068_-	LysE family translocator	NA	NA	NA	NA
WP_005407672.1\|235220_235622_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_012478803.1\|235677_236493_+	NAD-dependent protein deacetylase	S5M4R0	Bacillus_phage	2.3e-13	22.9
WP_005411935.1\|236614_237715_+	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_012478804.1\|237718_238630_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005411937.1\|238744_239596_+	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	9.9e-15	40.2
WP_005411938.1\|239883_240510_-	bifunctional nicotinamidase/pyrazinamidase	NA	NA	NA	NA
WP_032963135.1\|240565_241237_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_049395833.1\|241726_243136_-	nicotinate phosphoribosyltransferase	A0A218M332	Acidovorax_phage	1.2e-129	51.9
WP_086016255.1\|243200_244256_-	bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase	A0A1B0V161	Roseobacter_phage	7.8e-78	44.7
WP_005407681.1\|244443_246336_+	hypothetical protein	NA	NA	NA	NA
WP_154344293.1\|246329_246476_-	hypothetical protein	NA	NA	NA	NA
246639:246668	attL	NA	NA	NA	NA
WP_012478808.1\|246699_248067_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_012478809.1\|248182_249688_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_005407684.1\|249702_250869_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_005407685.1\|250865_251663_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_012478810.1\|251659_252835_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_005407687.1\|252831_253722_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA
WP_004153735.1\|253870_254296_-	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_005407688.1\|254407_255388_-	cation diffusion facilitator transporter	NA	NA	NA	NA
WP_012478812.1\|255467_255671_+	hypothetical protein	NA	NA	NA	NA
WP_012478814.1\|255966_257748_-	peptidoglycan-binding protein	NA	NA	NA	NA
WP_012478815.1\|257790_258222_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_099540251.1\|258612_258822_-	hypothetical protein	NA	NA	NA	NA
WP_049449397.1\|258937_259159_-	hypothetical protein	NA	NA	NA	NA
WP_099540247.1\|259424_260339_-	DNA cytosine methyltransferase	Q38204	Halobacterium_phage	1.7e-17	33.2
WP_099540245.1\|260335_261124_-	hypothetical protein	A0A0E3M3Z6	Verrucomicrobia_phage	1.6e-35	37.5
WP_125895198.1\|261116_261512_-	hypothetical protein	NA	NA	NA	NA
WP_099527579.1\|261504_261690_-	hypothetical protein	NA	NA	NA	NA
WP_087786709.1\|261682_262108_-	hypothetical protein	V9IQL6	Stenotrophomonas_phage	1.0e-57	87.2
WP_154344294.1\|262193_264884_-	bifunctional DNA primase/helicase	V9IQW5	Stenotrophomonas_phage	0.0e+00	96.4
WP_033833483.1\|264992_265238_-	hypothetical protein	V9IQH4	Stenotrophomonas_phage	1.1e-35	96.3
WP_154344295.1\|265237_265546_-	hypothetical protein	V9IQM8	Stenotrophomonas_phage	1.8e-27	64.1
WP_154344458.1\|265545_265788_-	hypothetical protein	V9IQX5	Stenotrophomonas_phage	6.6e-25	71.2
WP_071306434.1\|266114_266321_-	hypothetical protein	V9IQL4	Stenotrophomonas_phage	2.8e-24	85.3
WP_154344296.1\|266389_266731_-	hypothetical protein	V9IQW3	Stenotrophomonas_phage	5.6e-38	66.4
WP_100053249.1\|266727_267045_-	DNA-binding protein	NA	NA	NA	NA
WP_154344459.1\|267175_267547_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_154344297.1\|268056_269073_+	hypothetical protein	NA	NA	NA	NA
WP_154344298.1\|269148_270144_-	phage late control D family protein	V9IQM7	Stenotrophomonas_phage	2.8e-125	72.3
WP_154344299.1\|270140_270539_-	oxidoreductase	V9IQX3	Stenotrophomonas_phage	2.2e-57	84.8
WP_154344300.1\|270550_273760_-\|tail	phage tail tape measure protein	V9IQL1	Stenotrophomonas_phage	3.9e-290	63.1
WP_154344301.1\|273932_274049_-\|tail	GpE family phage tail protein	V9IQH2	Stenotrophomonas_phage	1.1e-06	78.4
WP_154344302.1\|274057_274396_-\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	1.4e-25	56.5
WP_049395235.1\|274452_274962_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	2.8e-81	86.4
WP_049395236.1\|274984_276157_-\|tail	phage tail sheath protein	V9IQK9	Stenotrophomonas_phage	4.2e-149	78.1
WP_154344303.1\|276172_276532_-\|plate	baseplate assembly protein	V9IQW0	Stenotrophomonas_phage	2.4e-47	77.3
WP_154344304.1\|276528_277095_-\|plate	phage baseplate assembly protein V	V9IQH1	Stenotrophomonas_phage	1.1e-41	67.9
WP_154344305.1\|277201_277783_-	hypothetical protein	NA	NA	NA	NA
WP_154344306.1\|281023_281575_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.8e-70	66.7
WP_154344307.1\|281567_282458_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	1.8e-131	80.7
WP_154344308.1\|282544_283006_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	1.5e-57	77.1
WP_154344309.1\|283002_283488_-\|tail	phage tail protein	V9IQM0	Stenotrophomonas_phage	3.7e-43	59.6
WP_154344310.1\|283484_284006_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	7.1e-32	52.6
WP_154344460.1\|284005_284611_-	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	4.8e-64	77.8
WP_010481666.1\|284642_284918_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	6.8e-34	81.3
WP_033833603.1\|284910_285264_-	membrane protein	V9IQG9	Stenotrophomonas_phage	2.2e-45	82.1
WP_033833604.1\|285266_285482_-\|tail	tail protein	V9IQL8	Stenotrophomonas_phage	9.7e-20	69.0
WP_154344311.1\|285481_285949_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	1.7e-56	74.8
WP_154344312.1\|286053_286761_-\|terminase	terminase	V9IQK3	Stenotrophomonas_phage	1.5e-56	67.3
WP_154344313.1\|286765_287815_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	2.5e-124	64.7
WP_154344314.1\|287848_288763_-\|capsid	phage capsid protein	V9IQG8	Stenotrophomonas_phage	5.5e-72	63.2
WP_154344315.1\|288830_290624_+\|terminase	terminase	V9IQL5	Stenotrophomonas_phage	0.0e+00	94.0
WP_154344316.1\|290623_291634_+\|portal	phage portal protein	V9IQW4	Stenotrophomonas_phage	8.3e-154	82.9
WP_154344317.1\|291712_292294_-	hypothetical protein	NA	NA	NA	NA
WP_154344318.1\|292966_293377_+	hypothetical protein	NA	NA	NA	NA
WP_125895207.1\|293477_294002_-	hypothetical protein	NA	NA	NA	NA
WP_049449473.1\|293970_295071_-\|integrase	site-specific integrase	A0A248XD46	Klebsiella_phage	1.9e-55	34.8
WP_154344319.1\|295196_296192_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_005407693.1\|296405_296780_+	hypothetical protein	NA	NA	NA	NA
WP_004136763.1\|296853_297537_+	response regulator transcription factor	NA	NA	NA	NA
WP_032953760.1\|297562_298987_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_099470490.1\|299587_300379_-	zinc-dependent peptidase	NA	NA	NA	NA
299394:299423	attR	NA	NA	NA	NA
WP_044569378.1\|300345_300624_-	hypothetical protein	NA	NA	NA	NA
WP_012478821.1\|300764_301733_+	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	NA	NA	NA
WP_005407698.1\|301729_302461_+	type III pantothenate kinase	NA	NA	NA	NA
WP_012478822.1\|302470_303319_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_012478868.1\|303519_304644_-	hypothetical protein	NA	NA	NA	NA
WP_012478869.1\|304671_305271_-	hypothetical protein	NA	NA	NA	NA
WP_154344320.1\|305504_305792_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	8.4e-19	44.2
WP_012478871.1\|305850_306153_+	putative addiction module antidote protein	A0A141GEX5	Brucella_phage	1.9e-08	39.3
WP_012478872.1\|306210_306534_-	hypothetical protein	NA	NA	NA	NA
WP_044569408.1\|306613_307021_-	hypothetical protein	NA	NA	NA	NA
WP_012478874.1\|307614_308385_+	DUF3011 domain-containing protein	NA	NA	NA	NA
WP_012478875.1\|308444_309389_+	hypothetical protein	NA	NA	NA	NA
WP_005407709.1\|309493_310414_+	arginase	A0A0N9R043	Chrysochromulina_ericina_virus	6.4e-28	33.6
WP_005407710.1\|310574_310712_+	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_004153772.1\|310919_311141_+	CsbD family protein	NA	NA	NA	NA
WP_012478876.1\|311214_312024_-	hypothetical protein	NA	NA	NA	NA
WP_049395252.1\|312132_313425_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

615312 : 622719

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033835594.1\|615312_616368_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.0e-78	45.9
WP_049397553.1\|616382_617270_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.1e-98	60.3
WP_033835936.1\|617266_617824_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	9.2e-46	51.1
WP_049397554.1\|617820_618714_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.1e-28	38.6
WP_049397555.1\|618766_620170_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.5e-47	29.4
WP_049397556.1\|620181_621528_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	1.0e-29	26.9
WP_049397557.1\|621762_622719_+	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	5.8e-88	48.1

DBSCAN-SWA_3

992252 : 1012118

Rhizobium_phage(38.46%)

tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152905628.1\|992252_994397_-	hypothetical protein	L7TLW2	Rhizobium_phage	2.8e-66	31.5
WP_049397858.1\|994384_994975_-	hypothetical protein	A0A2R2ZGD2	Ralstonia_phage	7.8e-27	41.9
WP_049397857.1\|995074_996028_-	hypothetical protein	L7TJ83	Rhizobium_phage	5.4e-62	42.4
WP_049397856.1\|996054_996840_-	hypothetical protein	A0A1B1IVZ8	uncultured_Mediterranean_phage	6.5e-21	31.1
WP_004154577.1\|996839_996983_-	hypothetical protein	NA	NA	NA	NA
WP_005412405.1\|996999_998556_-\|head,tail	phage collar / T7-like phage head-to-tail joining protein	L7TJ79	Rhizobium_phage	1.1e-85	37.6
WP_005412406.1\|998548_998701_-	hypothetical protein	NA	NA	NA	NA
WP_004154580.1\|998721_998901_-	hypothetical protein	NA	NA	NA	NA
WP_004154581.1\|998965_999502_-	adenylate kinase	A0A2H4J8A1	uncultured_Caudovirales_phage	1.4e-30	46.1
WP_049458784.1\|999597_999915_+	hypothetical protein	NA	NA	NA	NA
WP_049397854.1\|999918_1000125_-	hypothetical protein	NA	NA	NA	NA
WP_004154583.1\|1000112_1000946_-	hypothetical protein	M1HMA9	Pelagibacter_phage	2.0e-36	36.0
WP_004154584.1\|1000942_1001092_-	hypothetical protein	NA	NA	NA	NA
WP_049397853.1\|1001088_1001379_-	hypothetical protein	NA	NA	NA	NA
WP_004154585.1\|1001375_1001624_-	hypothetical protein	NA	NA	NA	NA
WP_049397852.1\|1001774_1002140_-	hypothetical protein	NA	NA	NA	NA
WP_050483582.1\|1002136_1002475_-	hypothetical protein	A0A2H4P845	Pseudomonas_phage	9.6e-22	53.2
WP_065427651.1\|1002456_1004331_-	DNA polymerase	A0A076YNV1	Mesorhizobium_phage	1.4e-159	47.9
WP_049397851.1\|1004343_1004994_-	hypothetical protein	NA	NA	NA	NA
WP_005412417.1\|1005004_1005253_-	hypothetical protein	NA	NA	NA	NA
WP_049397850.1\|1005418_1007050_-	toprim domain-containing protein	L7TLT7	Rhizobium_phage	1.3e-151	56.8
WP_004154591.1\|1007036_1007216_-	hypothetical protein	NA	NA	NA	NA
WP_080354126.1\|1007212_1007614_-	hypothetical protein	NA	NA	NA	NA
WP_004154593.1\|1007610_1007973_-	putative N-acetylmuramoyl-L-alanine amidase	I6Q9Z5	Yersinia_phage	2.5e-15	40.6
WP_080354127.1\|1007973_1008525_-	RusA family crossover junction endodeoxyribonuclease	A0A2I7QZP6	Vibrio_phage	1.6e-05	31.1
WP_154267700.1\|1009059_1009218_-	hypothetical protein	NA	NA	NA	NA
WP_049397849.1\|1009217_1009502_-	hypothetical protein	NA	NA	NA	NA
WP_005412422.1\|1009494_1009638_-	hypothetical protein	NA	NA	NA	NA
WP_049397848.1\|1009682_1012118_-	T3/T7 RNA polymerase	L7TQW5	Rhizobium_phage	2.5e-164	40.7

DBSCAN-SWA_4

1049306 : 1158325

Escherichia_phage(17.86%)

tail,transposase,plate,integrase

attL 1049260:1049280|attR 1085045:1085065

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1049260:1049280	attL	NA	NA	NA	NA
WP_049406765.1\|1049306_1050545_+\|integrase	tyrosine-type recombinase/integrase	A0A077KET4	Ralstonia_phage	1.0e-52	36.2
WP_049406770.1\|1050783_1051695_+	hypothetical protein	NA	NA	NA	NA
WP_049406762.1\|1051791_1059483_+	AAA family ATPase	F2NZ48	Diadromus_pulchellus_ascovirus	1.7e-25	30.4
WP_049406759.1\|1059591_1060878_-	inovirus Gp2 family protein	NA	NA	NA	NA
WP_049406757.1\|1061038_1061344_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_049406754.1\|1062298_1063255_+	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	4.6e-61	45.3
WP_049406752.1\|1063327_1064314_+	endonuclease	A0A139ZPJ9	Marinitoga_camini_virus	1.3e-45	35.7
WP_049406750.1\|1064325_1065222_+	hypothetical protein	NA	NA	NA	NA
WP_049406747.1\|1065321_1065819_+	DNA repair protein RadC	NA	NA	NA	NA
WP_080356388.1\|1066001_1067210_-	ADP-ribosylglycohydrolase family protein	A0A1I9SA26	Rhodococcus_phage	1.2e-18	27.7
WP_049407026.1\|1067368_1068283_+	WYL domain-containing protein	NA	NA	NA	NA
WP_049407025.1\|1068293_1068749_+	BREX-3 system P-loop-containing protein BrxF	NA	NA	NA	NA
WP_049407028.1\|1068784_1072513_+	hypothetical protein	NA	NA	NA	NA
WP_049407022.1\|1072559_1075421_+	DNA methylase	NA	NA	NA	NA
WP_049407020.1\|1075423_1078252_+	helicase	A0A2H4J643	uncultured_Caudovirales_phage	1.0e-47	26.7
WP_049407018.1\|1078248_1080264_+	BREX-3 system phosphatase PglZ	NA	NA	NA	NA
WP_049407016.1\|1080260_1080983_+	hypothetical protein	NA	NA	NA	NA
WP_049407014.1\|1081002_1082838_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_049407010.1\|1082924_1084391_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_049407008.1\|1084387_1084729_-	hypothetical protein	NA	NA	NA	NA
WP_049397088.1\|1085359_1087411_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.1e-47	41.4
1085045:1085065	attR	NA	NA	NA	NA
WP_005408298.1\|1087417_1087738_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_005408299.1\|1087849_1088449_+	recombination protein RecR	NA	NA	NA	NA
WP_005408300.1\|1088516_1088876_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_005408301.1\|1088953_1089481_-	membrane protein	NA	NA	NA	NA
WP_154344326.1\|1089477_1091427_-	DUF3488 domain-containing protein	NA	NA	NA	NA
WP_043033683.1\|1091419_1092364_-	DUF58 domain-containing protein	NA	NA	NA	NA
WP_005408304.1\|1092366_1093320_-	AAA family ATPase	NA	NA	NA	NA
WP_012479285.1\|1093362_1095204_+	membrane protein	NA	NA	NA	NA
WP_012478995.1\|1095289_1096234_-\|transposase	IS481-like element ISStma1 family transposase	NA	NA	NA	NA
WP_012479286.1\|1096462_1097032_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_049397145.1\|1097145_1097655_+	characterized ACR protein	NA	NA	NA	NA
WP_005408308.1\|1097762_1097957_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_005408309.1\|1098048_1099026_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_005408310.1\|1099104_1099887_+	hypothetical protein	NA	NA	NA	NA
WP_049397146.1\|1100143_1101088_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_012479289.1\|1101170_1101914_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	6.2e-13	32.3
WP_005408313.1\|1102066_1102306_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	4.6e-10	44.6
WP_012479290.1\|1102449_1103712_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_012479291.1\|1103926_1105291_+	aminodeoxychorismate synthase component I	NA	NA	NA	NA
WP_005412449.1\|1105416_1106478_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_049397147.1\|1106474_1107140_+	dTMP kinase	W8D0J5	Erwinia_phage	5.5e-21	34.9
WP_049397148.1\|1107136_1108093_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_005412452.1\|1108089_1108443_+	type IV pilus biogenesis protein PilZ	NA	NA	NA	NA
WP_080047683.1\|1108628_1109243_+	tautomerase family protein	NA	NA	NA	NA
WP_049397149.1\|1109273_1110347_-\|tail	phage tail protein	D5LGY1	Escherichia_phage	2.5e-95	51.9
WP_005408322.1\|1110337_1110553_-\|tail	phage tail protein	A0A193GYC8	Enterobacter_phage	1.6e-14	54.3
WP_005408323.1\|1110536_1111004_-\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	1.1e-15	35.2
WP_049397151.1\|1111006_1113469_-\|tail	phage tail tape measure protein	K4ICR4	Acidithiobacillus_phage	2.7e-12	26.7
WP_005408325.1\|1113589_1113880_-\|tail	phage tail assembly protein	A0A088FQX2	Escherichia_phage	5.5e-18	56.4
WP_005408326.1\|1113961_1114465_-\|tail	phage major tail tube protein	A0A193GYM4	Enterobacter_phage	5.4e-45	54.8
WP_049397152.1\|1114467_1115670_-\|tail	tail protein	A0A088FVH5	Escherichia_phage	4.6e-127	54.2
WP_012479299.1\|1115776_1116436_-	hypothetical protein	V9IQM3	Stenotrophomonas_phage	6.2e-17	32.9
WP_049397153.1\|1116437_1118405_-\|tail	tail fiber domain-containing protein	V9IQX0	Stenotrophomonas_phage	1.8e-104	38.8
WP_049397154.1\|1118412_1119192_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	7.1e-44	51.1
WP_005412462.1\|1119184_1120081_-\|plate	baseplate assembly protein J	V5YTH6	Pseudomonas_phage	1.9e-80	56.1
WP_005408332.1\|1120083_1120422_-\|plate	phage baseplate protein	A0A193GYY8	Enterobacter_phage	7.8e-32	62.2
WP_049397155.1\|1120474_1121065_-\|plate	phage baseplate assembly protein V	A0A193GYL5	Enterobacter_phage	1.6e-24	37.7
WP_049397157.1\|1121061_1121616_-	hypothetical protein	NA	NA	NA	NA
WP_134946151.1\|1121733_1122063_-	hypothetical protein	NA	NA	NA	NA
WP_043033664.1\|1121968_1122346_-	hypothetical protein	NA	NA	NA	NA
WP_005412466.1\|1122342_1122828_-	glycoside hydrolase family 104 protein	D5LH07	Escherichia_phage	1.4e-42	56.2
WP_005408337.1\|1122824_1123175_-	hypothetical protein	NA	NA	NA	NA
WP_005408338.1\|1123171_1123621_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_043033660.1\|1123955_1124339_-	hypothetical protein	NA	NA	NA	NA
WP_049397158.1\|1124491_1125130_-	hypothetical protein	A0A2H4J8A1	uncultured_Caudovirales_phage	4.5e-20	37.6
WP_049397160.1\|1125171_1125399_-	hypothetical protein	NA	NA	NA	NA
WP_049397162.1\|1125473_1125749_-	hypothetical protein	NA	NA	NA	NA
WP_049397165.1\|1125749_1128086_-	toprim domain-containing protein	D5LH15	Escherichia_phage	3.7e-136	43.3
WP_005408344.1\|1128572_1128797_+	hypothetical protein	NA	NA	NA	NA
WP_012479313.1\|1128808_1129063_+	hypothetical protein	NA	NA	NA	NA
WP_005412471.1\|1129274_1129661_+	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_049397166.1\|1129789_1131928_+	TonB-dependent receptor	NA	NA	NA	NA
WP_049397172.1\|1131939_1133445_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_043033653.1\|1133454_1134588_-	MFS transporter	NA	NA	NA	NA
WP_049397173.1\|1134599_1135376_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_044569588.1\|1135533_1136181_+	Qnr family pentapeptide repeat protein	NA	NA	NA	NA
WP_049397176.1\|1136184_1136859_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_049397177.1\|1136946_1137645_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_049397178.1\|1137760_1138705_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_049397180.1\|1138643_1140023_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_012479324.1\|1140156_1141020_+	DMT family transporter	NA	NA	NA	NA
WP_049397181.1\|1141060_1141996_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.7e-07	21.3
WP_049397184.1\|1142103_1143621_+	MFS transporter	NA	NA	NA	NA
WP_005408360.1\|1143900_1144305_-	GFA family protein	NA	NA	NA	NA
WP_005408361.1\|1144476_1145451_+	DUF4105 domain-containing protein	NA	NA	NA	NA
WP_012479329.1\|1145450_1147472_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_049397187.1\|1147560_1148982_-	MFS transporter	NA	NA	NA	NA
WP_005415534.1\|1149011_1149446_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
WP_049397188.1\|1149518_1150121_-	short chain dehydrogenase	NA	NA	NA	NA
WP_049397189.1\|1150219_1151095_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_049397190.1\|1151154_1151976_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_049397192.1\|1151994_1152672_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_004147099.1\|1152759_1153797_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_005408369.1\|1153897_1155040_+	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_049397194.1\|1155247_1156231_+	aldo/keto reductase	NA	NA	NA	NA
WP_049397195.1\|1156285_1157182_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012479096.1\|1157410_1158325_-\|transposase	IS110-like element ISStma7 family transposase	Q75QL1	Wolbachia_phage	8.7e-25	33.8

DBSCAN-SWA_5

2638926 : 2645838

Stenotrophomonas_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088610767.1\|2638926_2640098_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.5e-90	61.7
WP_154344380.1\|2641594_2641732_-	hypothetical protein	S0F2B8	Stenotrophomonas_phage	6.8e-19	84.4
WP_049396927.1\|2641782_2641917_-	hypothetical protein	NA	NA	NA	NA
WP_049396933.1\|2642224_2642527_-	single-stranded DNA-binding protein	B1NI78	Stenotrophomonas_phage	5.5e-45	94.8
WP_049441001.1\|2642542_2643640_-	replication protein	B1NI77	Stenotrophomonas_phage	3.5e-198	93.7
WP_154344381.1\|2643629_2643806_-	hypothetical protein	NA	NA	NA	NA
WP_049407100.1\|2643802_2644030_-	hypothetical protein	NA	NA	NA	NA
WP_053091128.1\|2644162_2644615_+	hypothetical protein	S0F2J2	Stenotrophomonas_phage	3.4e-38	69.5
WP_049396940.1\|2644719_2645838_+	sensor histidine kinase	A0A1B0VMK3	Pseudomonas_phage	1.9e-58	37.8

DBSCAN-SWA_6

2778191 : 2860104

Catovirus(23.53%)

holin,tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012479096.1\|2778191_2779106_-\|transposase	IS110-like element ISStma7 family transposase	Q75QL1	Wolbachia_phage	8.7e-25	33.8
WP_099470392.1\|2779941_2782212_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-09	62.3
WP_049395323.1\|2782249_2783119_+	chemotaxis protein CheR	NA	NA	NA	NA
WP_014037083.1\|2783115_2783712_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA
WP_021202077.1\|2783708_2784782_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
WP_049395322.1\|2785055_2787647_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_005416402.1\|2787690_2788089_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_005409505.1\|2788095_2788320_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_143565997.1\|2788579_2790505_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_049406723.1\|2790494_2792585_-	DUF4034 domain-containing protein	NA	NA	NA	NA
WP_049395319.1\|2792858_2795612_+	aconitate hydratase AcnA	NA	NA	NA	NA
WP_049395318.1\|2795742_2797293_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	4.1e-19	24.6
WP_049395317.1\|2797463_2798054_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_049418853.1\|2798092_2799565_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_021202070.1\|2799666_2801349_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	5.6e-54	30.0
WP_049397542.1\|2801575_2803252_+	long-chain fatty acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	3.3e-30	30.3
WP_049397541.1\|2803413_2804286_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_088610767.1\|2806476_2807647_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.5e-90	61.7
WP_049397539.1\|2807777_2808923_-	two-component system response regulator	NA	NA	NA	NA
WP_049397538.1\|2809128_2810640_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	1.1e-85	35.6
WP_049397538.1\|2814729_2816241_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	1.1e-85	35.6
WP_049397537.1\|2816405_2818046_-	acetolactate synthase large subunit	NA	NA	NA	NA
WP_049397536.1\|2818109_2819495_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_049395347.1\|2820192_2820975_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014037064.1\|2821128_2822254_-	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	2.5e-05	39.7
WP_049395346.1\|2822507_2825420_-	DUF2135 domain-containing protein	NA	NA	NA	NA
WP_049395345.1\|2825563_2827321_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.6e-43	29.6
WP_049395344.1\|2827479_2828520_+	DUF1176 domain-containing protein	NA	NA	NA	NA
WP_049395343.1\|2828632_2829550_-	phosphoglycerate mutase	NA	NA	NA	NA
WP_005416377.1\|2829554_2830031_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_019661462.1\|2830027_2833270_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_031270821.1\|2833418_2834546_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	5.8e-47	32.8
WP_080354105.1\|2834835_2835564_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_049395341.1\|2835781_2836243_+	DUF4304 domain-containing protein	NA	NA	NA	NA
WP_021204545.1\|2836330_2836579_-	hypothetical protein	NA	NA	NA	NA
WP_049396113.1\|2836578_2838444_-	ferrous iron transporter B	NA	NA	NA	NA
WP_021204543.1\|2838440_2838695_-	ferrous iron transport protein A	NA	NA	NA	NA
WP_019661454.1\|2838814_2839603_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_019661453.1\|2839605_2840007_+	VOC family protein	NA	NA	NA	NA
WP_049396114.1\|2840003_2840900_+	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	3.9e-38	34.8
WP_049396115.1\|2841001_2841772_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.1e-12	28.5
WP_005409468.1\|2841822_2842389_+	elongation factor P-like protein YeiP	NA	NA	NA	NA
WP_049396116.1\|2842551_2843244_-	hypothetical protein	NA	NA	NA	NA
WP_049396117.1\|2843327_2843720_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_049396118.1\|2843700_2846850_-	multidrug efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	2.8e-54	22.7
WP_049396119.1\|2846886_2848032_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_005409463.1\|2848128_2848878_+	response regulator transcription factor	NA	NA	NA	NA
WP_049396120.1\|2848877_2849954_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	2.1e-22	26.0
WP_049407147.1\|2849931_2851728_-	DUF4105 domain-containing protein	NA	NA	NA	NA
WP_005409460.1\|2851762_2852062_-	DUF2388 domain-containing protein	NA	NA	NA	NA
WP_049396121.1\|2852124_2853513_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_005409458.1\|2853682_2854924_+	phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	9.7e-104	47.9
WP_080354106.1\|2855003_2855618_-	NUDIX hydrolase	NA	NA	NA	NA
WP_005409456.1\|2855751_2857227_+	amino acid permease	NA	NA	NA	NA
WP_049407148.1\|2857309_2858737_+	amino acid permease	NA	NA	NA	NA
WP_006388655.1\|2858953_2859247_+\|transposase	transposase	NA	NA	NA	NA
WP_049396123.1\|2859243_2860104_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.9e-40	38.2

DBSCAN-SWA_7

3734230 : 3770321

Stenotrophomonas_phage(84.62%)

terminase,portal,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154344389.1\|3734230_3736096_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	1.6e-62	34.1
WP_154344390.1\|3736154_3737006_-	toprim domain-containing protein	A0A1B0VML8	Pseudomonas_phage	1.4e-40	49.6
WP_154344391.1\|3736992_3737634_-	hypothetical protein	NA	NA	NA	NA
WP_154344392.1\|3737630_3737846_-	hypothetical protein	NA	NA	NA	NA
WP_154344393.1\|3737842_3738052_-	hypothetical protein	NA	NA	NA	NA
WP_080354120.1\|3738345_3738630_-	ogr/Delta-like zinc finger family protein	E5E3P1	Burkholderia_phage	8.1e-06	40.3
WP_049395279.1\|3738639_3738843_-	hypothetical protein	NA	NA	NA	NA
WP_088610767.1\|3738988_3740159_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.5e-90	61.7
WP_154344394.1\|3740880_3742071_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	9.9e-122	57.2
WP_154344395.1\|3742415_3743018_-	hypothetical protein	NA	NA	NA	NA
WP_154344396.1\|3743088_3743586_-	hypothetical protein	B7SYF7	Stenotrophomonas_phage	2.1e-65	79.2
WP_154344397.1\|3743945_3744611_+	SOS response-associated peptidase	B7SYF4	Stenotrophomonas_phage	3.0e-120	95.5
WP_154344398.1\|3744614_3745406_-	DNA adenine methylase	B7SYF3	Stenotrophomonas_phage	5.3e-156	99.2
WP_154344399.1\|3745553_3745787_-	hypothetical protein	B7SYF2	Stenotrophomonas_phage	3.2e-32	87.0
WP_154344400.1\|3747971_3748970_-	hypothetical protein	B7SYF0	Stenotrophomonas_phage	1.6e-40	34.2
WP_154344401.1\|3748966_3752572_-	hypothetical protein	B7SYE9	Stenotrophomonas_phage	0.0e+00	81.2
WP_053451668.1\|3752575_3752992_-	hypothetical protein	B7SYE8	Stenotrophomonas_phage	1.8e-62	84.8
WP_154344402.1\|3752991_3756741_-	Laminin subunit alpha-2	B7SYE7	Stenotrophomonas_phage	0.0e+00	71.0
WP_049397889.1\|3756733_3757384_-	hypothetical protein	B7SYE6	Stenotrophomonas_phage	2.2e-107	89.4
WP_154344403.1\|3757455_3758256_-	hypothetical protein	B7SYE5	Stenotrophomonas_phage	4.7e-144	96.2
WP_154344463.1\|3758269_3758689_-	hypothetical protein	B7SYE4	Stenotrophomonas_phage	1.1e-56	82.0
WP_049460312.1\|3758744_3759089_-	hypothetical protein	B7SYE3	Stenotrophomonas_phage	7.0e-36	69.3
WP_154344404.1\|3759085_3759577_-	endopeptidase	B7SYE1	Stenotrophomonas_phage	1.2e-44	64.4
WP_004152731.1\|3759573_3760149_-	glycoside hydrolase family protein	NA	NA	NA	NA
WP_111007503.1\|3760138_3760438_-	hypothetical protein	NA	NA	NA	NA
WP_111007504.1\|3760517_3760883_-	DUF2190 family protein	B7SYD8	Stenotrophomonas_phage	5.1e-53	92.6
WP_154344405.1\|3760905_3762888_-	peptidase S14	B7SYD7	Stenotrophomonas_phage	0.0e+00	96.7
WP_004152728.1\|3762884_3764375_-\|portal	phage portal protein	B7SYD6	Stenotrophomonas_phage	6.3e-283	98.6
WP_015994693.1\|3764376_3764592_-	hypothetical protein	B7SYD5	Stenotrophomonas_phage	7.2e-31	100.0
WP_049442272.1\|3764671_3764992_-	hypothetical protein	B7SYD4	Stenotrophomonas_phage	1.8e-49	97.1
WP_154344406.1\|3764985_3766911_-\|terminase	phage terminase large subunit family protein	B7SYD3	Stenotrophomonas_phage	0.0e+00	98.0
WP_154344407.1\|3766907_3767564_-	hypothetical protein	B7SYD2	Stenotrophomonas_phage	2.1e-89	92.7
WP_154344408.1\|3767906_3770321_-	toprim domain-containing protein	B7SYD0	Stenotrophomonas_phage	0.0e+00	97.1

DBSCAN-SWA_8

3775193 : 3783593

Stenotrophomonas_phage(83.33%)

integrase

attL 3775438:3775452|attR 3789116:3789130

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154344417.1\|3775193_3775682_+	hypothetical protein	B7SYG7	Stenotrophomonas_phage	3.6e-78	91.4
3775438:3775452	attL	NA	NA	NA	NA
WP_154344418.1\|3775689_3776082_+	hypothetical protein	B7SYG6	Stenotrophomonas_phage	5.3e-48	73.1
WP_154344419.1\|3776078_3776810_+	hypothetical protein	B7SYG5	Stenotrophomonas_phage	1.2e-117	87.2
WP_154344420.1\|3776849_3777398_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_154344421.1\|3777430_3777856_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_154344422.1\|3777882_3778326_+	hypothetical protein	NA	NA	NA	NA
WP_154344423.1\|3778322_3779690_+	reverse transcriptase	D4HTV9	Vibrio_phage	4.9e-48	33.7
WP_154344424.1\|3779686_3780577_+	hypothetical protein	NA	NA	NA	NA
WP_107380224.1\|3780569_3780827_+	hypothetical protein	NA	NA	NA	NA
WP_107380226.1\|3780819_3781059_+	hypothetical protein	NA	NA	NA	NA
WP_154344425.1\|3781158_3781503_+	hypothetical protein	NA	NA	NA	NA
WP_154344426.1\|3781495_3782227_+	hypothetical protein	NA	NA	NA	NA
WP_154344427.1\|3782223_3782439_+	hypothetical protein	V9IQX6	Stenotrophomonas_phage	1.3e-11	51.4
WP_107380234.1\|3782435_3783593_+\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	1.5e-69	38.9
3789116:3789130	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3787685 : 3809578

Xanthomonas_citri_phage(50.0%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154344429.1\|3787685_3793682_-	hypothetical protein	K4NZ44	Pseudomonas_phage	7.2e-152	30.7
WP_154344430.1\|3793681_3795925_-	hypothetical protein	K7ZJS6	Xanthomonas_citri_phage	7.2e-73	32.9
WP_154344431.1\|3795896_3796331_+	hypothetical protein	NA	NA	NA	NA
WP_154344432.1\|3796282_3796762_-	hypothetical protein	I6Q9W6	Yersinia_phage	1.4e-10	36.1
WP_154344433.1\|3796754_3797237_-	hypothetical protein	K7ZPX6	Xanthomonas_citri_phage	1.0e-40	53.9
WP_100437336.1\|3797233_3798880_-	hypothetical protein	K7ZLE6	Xanthomonas_citri_phage	3.0e-185	56.9
WP_100437337.1\|3798879_3800052_-	hypothetical protein	K7ZRM6	Xanthomonas_citri_phage	8.2e-137	56.0
WP_088611213.1\|3800054_3800696_-	hypothetical protein	K7ZJS5	Xanthomonas_citri_phage	5.3e-45	44.9
WP_088611212.1\|3800699_3801032_-	hypothetical protein	K7ZMJ6	Xanthomonas_citri_phage	7.7e-32	68.4
WP_100437338.1\|3801081_3801405_-	hypothetical protein	NA	NA	NA	NA
WP_100437339.1\|3801401_3801836_-	hypothetical protein	A0A2I7RHV3	Vibrio_phage	4.1e-25	47.2
WP_054172936.1\|3801906_3802908_-	hypothetical protein	A0A2I7QL96	Vibrio_phage	3.3e-110	58.0
WP_088611209.1\|3802977_3803667_-	hypothetical protein	K7ZRM5	Xanthomonas_citri_phage	2.0e-34	52.0
WP_151458228.1\|3803656_3804016_-	hypothetical protein	NA	NA	NA	NA
WP_154344434.1\|3804012_3805725_-	hypothetical protein	K7ZJS4	Xanthomonas_citri_phage	7.7e-176	55.8
WP_154344435.1\|3805724_3805988_-	hypothetical protein	NA	NA	NA	NA
WP_108270324.1\|3805992_3806196_-	hypothetical protein	NA	NA	NA	NA
WP_154344436.1\|3806206_3807706_-\|terminase	terminase	G9L6B8	Escherichia_phage	4.3e-138	52.6
WP_088611205.1\|3807677_3808133_-\|terminase	terminase small subunit protein	L7TIB4	Pseudomonas_virus	1.1e-25	48.8
WP_088611204.1\|3808132_3808381_-	hypothetical protein	NA	NA	NA	NA
WP_151458227.1\|3808377_3808848_-	hypothetical protein	NA	NA	NA	NA
WP_088611202.1\|3808852_3809098_-	hypothetical protein	E5EYD6	Acinetobacter_phage	2.3e-17	60.5
WP_100437344.1\|3809113_3809578_-	lysozyme	A0A1W6JNW4	Morganella_phage	6.3e-24	43.9

DBSCAN-SWA_10

3813031 : 3831199

Xylella_phage(23.08%)

integrase

attL 3813695:3813710|attR 3829985:3830000

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099561975.1\|3813031_3814504_-	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	1.5e-82	40.1
3813695:3813710	attL	NA	NA	NA	NA
WP_088611195.1\|3815470_3815815_-	hypothetical protein	NA	NA	NA	NA
WP_088611194.1\|3815814_3816357_-	HNH endonuclease	K4I2Y2	Salmonella_phage	2.5e-19	38.9
WP_088611192.1\|3816640_3816886_+	hypothetical protein	NA	NA	NA	NA
WP_154344438.1\|3816957_3817203_-	helix-turn-helix domain-containing protein	W6MWX8	Pseudomonas_phage	3.7e-07	60.0
WP_154344439.1\|3817285_3817945_+	helix-turn-helix transcriptional regulator	C8CLH0	Xylella_phage	2.5e-13	28.6
WP_154344440.1\|3817963_3818305_+	hypothetical protein	NA	NA	NA	NA
WP_088611190.1\|3818443_3818623_+	hypothetical protein	NA	NA	NA	NA
WP_154344441.1\|3818626_3818977_+	hypothetical protein	NA	NA	NA	NA
WP_049446532.1\|3818973_3819159_+	hypothetical protein	NA	NA	NA	NA
WP_049446528.1\|3819268_3819586_+	hypothetical protein	NA	NA	NA	NA
WP_049446527.1\|3819575_3819866_+	hypothetical protein	K7PMC8	Enterobacterial_phage	4.1e-05	43.7
WP_154344442.1\|3820026_3820545_+	hypothetical protein	NA	NA	NA	NA
WP_154344443.1\|3820704_3821649_+	phage recombination protein Bet	U6C6J0	Ralstonia_phage	4.1e-62	50.6
WP_154344444.1\|3821645_3823340_+	hypothetical protein	U6C712	Ralstonia_phage	9.5e-94	39.4
WP_100437353.1\|3823339_3823555_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_100437354.1\|3823551_3823773_+	hypothetical protein	NA	NA	NA	NA
WP_100437355.1\|3823769_3824630_+	hypothetical protein	A0A067XQE4	Caulobacter_phage	6.0e-28	32.1
WP_087786643.1\|3824629_3824920_+	hypothetical protein	NA	NA	NA	NA
WP_100437356.1\|3824916_3825159_+	hypothetical protein	NA	NA	NA	NA
WP_100437357.1\|3825155_3825677_+	hypothetical protein	NA	NA	NA	NA
WP_154344445.1\|3825673_3826498_+	hypothetical protein	NA	NA	NA	NA
WP_154344446.1\|3826494_3827043_+	adenine methyltransferase	A0A166Y0E3	Gordonia_phage	3.3e-48	60.8
WP_100437360.1\|3827054_3827270_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	2.0e-12	61.5
WP_088611174.1\|3827269_3828298_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.3e-111	62.0
WP_049396253.1\|3828612_3829569_+	hypothetical protein	NA	NA	NA	NA
WP_012481067.1\|3829753_3830419_-	7-cyano-7-deazaguanine synthase QueC	A0A2I7S903	Vibrio_phage	4.1e-24	35.9
3829985:3830000	attR	NA	NA	NA	NA
WP_012481068.1\|3830497_3831199_-	7-carboxy-7-deazaguanine synthase QueE	J9PV61	Bacillus_phage	4.0e-38	41.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040440

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection