CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP046064	Leuconostoc mesenteroides subsp. mesenteroides strain CBA3607 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0
NZ_CP046062	Leuconostoc mesenteroides subsp. mesenteroides strain CBA3607 chromosome, complete genome	3 crisprs	cas3,csa3,DEDDh	8	5
NZ_CP046063	Leuconostoc mesenteroides subsp. mesenteroides strain CBA3607 plasmid unnamed1, complete sequence	0 crisprs	RT	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046062_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046062_1

149822-151192

Unclear

Consensus_repeat	Method
NTCTGGCGTNCTNTCNGG	CRT

24 spacers

The CRISPR arrays of NZ_CP046062_1

>merge|NZ_CP046062|1|149822-151192|CRT
TCTGGGCGTACTTTCGGGGGCGCTTTTGGGTACACTCTCTGATCCGCTTTTGGGCGTACTTTCAGGGGTACTTTCCGGCGTGCTTTCTGGTGCACTCTCTGGTCCGCTTTCGGGGGCGCTCTCTGGCGTGCTCTCTGGCGCGCTTTCAGGGGCACTCTCAGGGGTACTCTCTGGCGTGCTTGGCGCGCTTTCTGGCGTACTTTCCGGCGTGCTTTCGGGGGCGCTTTCTGGCGCGCTTTCTGGCGTACTCTCCGGCGTGCTTTCGGGGGCGCTTTCTGGCGCGCTTTCTGGCGTACTCTCTGGCGTACTTTCCGGCGTGCTTTCGGGGGCGCTTTCTGGCGTACTTTCCGGCGTGCTCTCTGGCGCGCTTTCCGGCGTACTCTCTGGCGCGCTCTCTGGCGTGCTCTCTGGCGCGCTTTCGGGGGTACTCTCTGGCGCGCTCTCTGGCGTACTTTCAGGGGCACTCTCTGGCGTGCTCTCTGGCGCGCTTTCGGGCGTGCTCTCTGGCGTACTTTCAGGGGTACTTTCCGGCGTGCTCTCTGGCGCGCTTTCGGGGGTACTCTCTGGCGCGCTTTCTGGCGTACTCTCTGGCGCGCTTTCGGGCGTGCTCTCTGGCGTACTTTCGGGGGCGCTTTCGGGCGTACTCTCGGGGGCACTTTCGGGGGTACTCTCTGGCGCGCTTTCGGGCGTGCTCTCGGGGGCACTTTCGGGCGTGCTTTCCGGCGTGCTCTCTGGCGCGCTTTCGGGCGTGCTCTCTGGGGCGCTCTCTGGCGTACTTTCGGGGGCACTCTCTGGCGCGCTTTCTGGCGTGCTCTCGGGGGCGCTTTCGGGCGCGCTTTCTGGCGTGCTCTCGGGGGCGCTTTCTGGCGTGCTCTCTGGCGCGCTTTCGGGGGCACTCTCTGGCGTACTTTCAGGAGCGCTTTCTGGCGTACTCTCGGGCGTACTTTCCGGCGTGCTCTCTGGCGTACTTTCGGGCGTGCTCTCGGGTGTACTCTCCGGCGTACTTTCGGGGGCGCTTTCTGGCGTACTTTCGGGCGTACTCTCGGGCGTGCTTTCGGGCGTGCTCTCTGGCGTACTTTCGGGGGCACTTTCGGGCGTGCTCTCTGGCGCGCTTTCGGGGGCACTCTCTGGCGTACTTTCAGGAGCGCTTTCTGGCGTACTCTCTGGCGTACTTTCGGGCGTGCTCTCTGGTGCACTCTCGGGGGCGCTTTCTGGCGTACTCTCAGGGGCACTTTCGGGCGTGCTCTCAGGCGCGCTTTCTGGCGTACTTTCGGGGGCACTTTCGGGCGTGCTCTCCGGCGCACTTTCTGGCGTACTTTCAGGGGTGCTCTCCGGCGTACTTTCGGGGGCGCTTTCTGGCGTACTCTCTGG

>NZ_CP046062|1|1|149822-151192|CRT
TCTGGGCGTACTTTCGGG	GGCGCTTTTGGGTACACTCTCTGATCCGCTTTTGGGCGTACTTTCAGGGGTACT
TTCCGGCGTGCTTTCTGG	TGCACTCTCTGGTCCGCTTTCGGGGGCGCT
CTCTGGCGTGCTCTCTGG	CGCGCTTTCAGGGGCACTCTCAGGGGTACTCTCTGGCGTGCTTGGCGCGCT
TTCTGGCGTACTTTCCGG	CGTGCTTTCGGGGGCGCTTTCTGGCGCGCT
TTCTGGCGTACTCTCCGG	CGTGCTTTCGGGGGCGCTTTCTGGCGCGCT
TTCTGGCGTACTCTCTGG	CGTACTTTCCGGCGTGCTTTCGGGGGCGCTTTCTGGCGTACT
TTCCGGCGTGCTCTCTGG	CGCGCTTTCCGGCGTACTCTCTGGCGCGCT
CTCTGGCGTGCTCTCTGG	CGCGCTTTCGGGGGTACTCTCTGGCGCGCTCTCTGGCGTACTTTCAGGGGCACT
CTCTGGCGTGCTCTCTGG	CGCGCTTTCGGGCGTGCTCTCTGGCGTACTTTCAGGGGTACT
TTCCGGCGTGCTCTCTGG	CGCGCTTTCGGGGGTACTCTCTGGCGCGCTTTCTGGCGTACTCTCTGGCGCGCT
TTCGGGCGTGCTCTCTGG	CGTACTTTCGGGGGCGCTTTCGGGCGTACTCTCGGGGGCACTTTCGGGGGTACTCTCTGGCGCGCT
TTCGGGCGTGCTCTCGGG	GGCACTTTCGGGCGTGCTTTCCGGCGTGCTCTCTGGCGCGCT
TTCGGGCGTGCTCTCTGG	GGCGCTCTCTGGCGTACTTTCGGGGGCACTCTCTGGCGCGCT
TTCTGGCGTGCTCTCGGG	GGCGCTTTCGGGCGCGCT
TTCTGGCGTGCTCTCGGG	GGCGCTTTCTGGCGTGCTCTCTGGCGCGCTTTCGGGGGCACT
CTCTGGCGTACTTTCAGG	AGCGCTTTCTGGCGTACTCTCGGGCGTACTTTCCGGCGTGCT
CTCTGGCGTACTTTCGGG	CGTGCTCTCGGGTGTACTCTCCGGCGTACTTTCGGGGGCGCT
TTCTGGCGTACTTTCGGG	CGTACTCTCGGGCGTGCTTTCGGGCGTGCT
CTCTGGCGTACTTTCGGG	GGCACTTTCGGGCGTGCTCTCTGGCGCGCTTTCGGGGGCACT
CTCTGGCGTACTTTCAGG	AGCGCTTTCTGGCGTACT
CTCTGGCGTACTTTCGGG	CGTGCTCTCTGGTGCACTCTCGGGGGCGCT
TTCTGGCGTACTCTCAGG	GGCACTTTCGGGCGTGCTCTCAGGCGCGCT
TTCTGGCGTACTTTCGGG	GGCACTTTCGGGCGTGCTCTCCGGCGCACT
TTCTGGCGTACTTTCAGG	GGTGCTCTCCGGCGTACTTTCGGGGGCGCT
TTCTGGCGTACTCTCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046062.1\|WP_146956223.1\|148014_149541_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340855
NZ_CP046062.1\|WP_146956220.1\|145250_145772_-\|DUF1456-family-protein	unknown	unknown	gnl\|CDD\|227144
NZ_CP046062.1\|WP_146956232.1\|163101_163410_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP046062.1\|WP_146956229.1\|159111_160098_-\|YegS/Rv2252/BmrU-family-lipid-kinase	unknown	unknown	gnl\|CDD\|237282
NZ_CP046062.1\|WP_146956218.1\|143704_144583_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553
NZ_CP046062.1\|WP_146956216.1\|140776_141598_-\|TIGR00159-family-protein	unknown	unknown	gnl\|CDD\|224539
NZ_CP046062.1\|WP_146956217.1\|141604_143701_-\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP046062.1\|WP_011680241.1\|163629_163899_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP046062.1\|WP_146956214.1\|138305_139673_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
NZ_CP046062.1\|WP_146956231.1\|161633_163100_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP046062.1\|WP_146956215.1\|139676_140780_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227193
NZ_CP046062.1\|WP_146956219.1\|144772_145186_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|239876
NZ_CP046062.1\|WP_146956221.1\|145963_146191_-\|CsbD-family-protein	unknown	unknown	unknown
NZ_CP046062.1\|WP_002815336.1\|163948_164200_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP046062.1\|WP_146956227.1\|154931_157496_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP046062.1\|WP_146956226.1\|152980_154927_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP046062.1\|WP_146956230.1\|160178_161618_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP046062.1\|WP_146956228.1\|157633_159031_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP046062.1\|WP_146956222.1\|146303_148013_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|236626
NZ_CP046062.1\|WP_146956225.1\|152571_152937_-\|DUF1304-family-protein	unknown	unknown	gnl\|CDD\|377753

Protein	Function_ID	Function_description	E-value
NZ_CP046062.1\|WP_146956223.1\|148014_149541_-\|glycosyltransferase	gnl\|CDD\|340855	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found in bacteria.	4.38608e-45
NZ_CP046062.1\|WP_146956220.1\|145250_145772_-\|DUF1456-family-protein	gnl\|CDD\|227144	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown].	7.94933e-38
NZ_CP046062.1\|WP_146956232.1\|163101_163410_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	6.06206e-30
NZ_CP046062.1\|WP_146956230.1\|160178_161618_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP046062.1\|WP_146956218.1\|143704_144583_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	1.20669e-151
NZ_CP046062.1\|WP_146956216.1\|140776_141598_-\|TIGR00159-family-protein	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	9.85868e-90
NZ_CP046062.1\|WP_146956217.1\|141604_143701_-\|Na+/H+-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	7.22094e-85
NZ_CP046062.1\|WP_011680241.1\|163629_163899_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	5.32079e-51
NZ_CP046062.1\|WP_146956214.1\|138305_139673_-\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP046062.1\|WP_146956231.1\|161633_163100_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP046062.1\|WP_146956215.1\|139676_140780_-\|hypothetical-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	6.08796e-42
NZ_CP046062.1\|WP_146956219.1\|144772_145186_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|239876	cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that are most essential for catalysis.	1.59798e-78
NZ_CP046062.1\|WP_146956229.1\|159111_160098_-\|YegS/Rv2252/BmrU-family-lipid-kinase	gnl\|CDD\|237282	PRK13055, PRK13055, putative lipid kinase; Reviewed.	0
NZ_CP046062.1\|WP_002815336.1\|163948_164200_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.8438e-20
NZ_CP046062.1\|WP_146956227.1\|154931_157496_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP046062.1\|WP_146956226.1\|152980_154927_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP046062.1\|WP_146956228.1\|157633_159031_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	4.18331e-151
NZ_CP046062.1\|WP_146956222.1\|146303_148013_-\|glycosyl-transferase	gnl\|CDD\|236626	PRK09814, PRK09814, sugar transferase.	2.43306e-52
NZ_CP046062.1\|WP_146956225.1\|152571_152937_-\|DUF1304-family-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	2.94338e-27

>NZ_CP046062.1|WP_146956223.1|148014_149541_-|glycosyltransferase
MESIFLNTYYAESLSGASYAVHKRVKLFENHKFNVTVVTLNYFITNRYYLMHHFPDQLNHFLDITDILADNIFVNEQDAFKELISQVEKQYTIDFKNKKGVSRNKSYFLWNLYPDGRLLSVTYYNSKNVPVRTDSYDWRGYLSTISYFSYDGNRNERYIARREHFKSSGSKKIIYYFTATNEVRRIDWIRQNDQVQVFNNLDDLNVAALDYYTSNCKNYLIIADLFKTTTIAKISKLNEKPNIKLLMQLHNIQVNHTSINEPIRIGYSYPILNRERYSGIIALTTRQKQDIDLFRRTENSNVYAIPENWFSTRDIEEYSKINWEDKEEGLIIVSARLDKTKQIDHAIKAVVFAHQSVPTIHLEIWGSGPEKAELQALINKKNAQDFIKLKGLIDNEGMKKRMSEAKLHLLTSIHEGLPMVLFEAQLGKTPSICYDIDYGPDAIIENRVNGDLIAANDTQYLAMRIIELFEEKEEGILQKYALNSQFTIEKYSEESVWQLWQKMLEKIY
>NZ_CP046062.1|WP_146956222.1|146303_148013_-|glycosyl-transferase
MKVVIAKEINKELENWQKFQTEPILFITWTSEIEYSTRLNEINLYDFIRNSSNHIELTDLPFTKYQILNYSSASEKHQFEFKNFNNQIVNKIFLSGNDQHVQTVYNYDDNQKIISVDHPFNNGIGQQIVYDDQSDPITSRFVGNNKKIEIYWQRIDNKLTETGMMLTEYGESTFYNSYWDWQFEEFYKIIDQNQNVTEIISYGLPALNSHIKSRRVEKGSFEHNNTLAFYKSSKNRKKWMIRFDDKNHWKPRNDAALFASLVGYHQISLDKEPYIDEVHWIIEQLERHCKYVSTGDLVIWQYPMCSAKLENAMLSWFHDKGVFIASFIHDLTLIRYDVSKLSGYDSEEDKRVLTRFDANIVPQKFSSALNKIAGVSLKNVIPLEPYDFRINHTDNVEPASYDLQVVYAGSLSKFPDINNIDFDLTVFGEKNFSNINITNDNLHDGGFILAEDLAQKLDKGFGLIWDEDADNVYRQNYTKWNWPYKFSLYMASGLPVIAWKHSAIAEIIESYQLGVTIESLSEVSNAISGITSEEFHIMAEHAATFGNKLIHGESTKRALNKLELMIPTM
>NZ_CP046062.1|WP_146956221.1|145963_146191_-|CsbD-family-protein
MSFEEKFDNAKDKIADKAKELEEKISDDKSREVEGKIQNVKGAAKDDVQKVRDVAHDDVDAVKDALKNKKNHSEK
>NZ_CP046062.1|WP_146956220.1|145250_145772_-|DUF1456-family-protein
MAFNNNDIIIRLRYALSIKDADMIKIFKFGGVTVDENQLHNLLTKQAEDTKRDEKVTTKTLESFMNGLIISQRGEKIGPDLKPVPPTFDMVNEAAINNVVIKKLKIAMSYTSNDLIGFLKTAGIEISNSELSAILRRPDHRNYKPAGDRYLRNILKGMAIEYRPDDVKRTARK
>NZ_CP046062.1|WP_146956219.1|144772_145186_-|nucleoside-diphosphate-kinase
MVERTFMMIKPDGVSRGKIGEIIQRIEHKGYAIKAMKMVQPTPELLAKHYAEHVGKTFYPSLVQYMTSGPVIVMIGEGTNIVSGWRAIMGITNPTLAAPGTIRGDLGREWEGEAVKNIVHGSDSVETAEKEIKLWFT
>NZ_CP046062.1|WP_146956218.1|143704_144583_-|UDP-N-acetylmuramate-dehydrogenase
MQLENIEILENHSLAPYAYTQAGGLVDYLAMPKSVHELKVLVNWAKESDMPIQVFGRLSNLIVRNGGLRGLSILLHDLRDVIVEKNKIVASAGADLIWVTEQAFEHGLSGLEWGAGIPGSVGGAVFMNAGAYGGQVDMVVSSVTALMPDDTIQIFEKDSLEFGYRKSVFQNNGGIIISATFELQEDSCAAIRKRMDENNFKRANKQPLNYPSNGSVFKRPEGYFAGKLIMDSKLQGVRRGGVEVSKKHAGFMVNVAHGTGNDYEDLIHYVQKTVYEKFGVHLETEVRIMGER
>NZ_CP046062.1|WP_146956217.1|141604_143701_-|Na+/H+-antiporter
MAILELIVILIVAVTISNIVSHFIPEIPISLFQIAIGLFLALVCGIYVEVDSAWFMLLFIAPLLFNDAWRFPKHELWELRGPILGNSIILVILTTLVGGFLMHLLMPQLPKSVALALAAVISPTDPVAVQAIARRVKLPENVMHIVSGESLINDASGLVSFNTAIKATIAGTFLIGEAIGNFFWMTIVGLAVGLILGSFVSWLRDSFDRAGLNDVVFHTVVTLLMPFVIYWVAEDIFHSSGVIAVVAGGILSKILSDQHMNARSPEINVVAVRTWEVFVYLLNGTVFILLGIELPAAMKDIVRSTQVHTGMAIFYGVAVWFIIFTIRTLWAYGTQITYHLKHKQRTVSFRIAIISGLTGVRGAVTMAAVLTVPSTIADGSAFPQRNLLVFVAAVVVIISLLVATIMLPIVTKQRTTHDFTQPEVGEVETSNTHESKVDLTEAQARIFSIRIGMQVLREQQNDHNRIIVYELIGRKQQNIDQIYRQLNKNNDHKVNIEDDRELRRVALEAQRNCLRQLLADEKISTLTYSSQNRRLDRLENMIDSDKHYHLSTQWIIILWRRTLRSFRIWISDESTDQFREESSMATKEMAKEAIRSLSEYMEKYTGDTVSHRMERQAAYNLIISYRNQIEKERHPDTPEQRELDDRYRMELEIKALNVERETIQQLYEQGRISRQAGVNIRQFINYAETAALAGRDEE
>NZ_CP046062.1|WP_146956216.1|140776_141598_-|TIGR00159-family-protein
MNILLYFTFNNLMHVIDIAIIWFILYKLIQFVEGTRAFQILFGVGFVILVKVVSWYLGLITLSWIMDQIITWAPIAVVVIFQQEIRRGLESLGRRLVIRRARVDNSKEHQLIKSLDDALQYMSKRRIGALITIKRDGSLDEYIKTGIKLDAYITGQLLINTFIPNTPLHDGAVIIDDDRIAVAAAYLPLSESTRIPKELGTRHRAAVGISEASDAITVVVSEETGEISITQGGDLLRNMDQESYMNFFEHQFLVQIAEENDKHWWQKIGGRSK
>NZ_CP046062.1|WP_146956215.1|139676_140780_-|hypothetical-protein
MKKIGQSKIVNLVISLVIAILLAAYVSSTKQGTATNSGGSTNFSTLIPEKRATLKVPLNLQVDSDKYVVIGAPSTVKVGIEGSGPLVTAAQSHNDIQASVDLRSLGVGKHNVKVALRGVNSSLTSTVTPQTVTVTISQKKATKLPVQVSFDKSKIATGYIVGATTSNPKNVTISGPTDNVEAVSYVDAEVSLDSGVKESLSQSVKLVARDKDGNAVEVNISDPTANVRLDIEPEDNKKMNLSATINNGDSNDYTVTFDPKTVTAYGSSDILKSVDTISIPVDVGDISSKTTRTLEIPTQTGIVEYNVSKVKVTITPSNTSSTSSSSTESNSSSSSSISSSSSSAESTSSTSSSTQSSANTTSETKGQ
>NZ_CP046062.1|WP_146956214.1|138305_139673_-|phosphoglucosamine-mutase
MSEFNLKYFGTDGVRGVANKTLTPELAFRLGRTGGAILTKHANDENKKPVVIVGRDTRISGEMLQQAIIAGFLSVGIDVLRLGVITTPAVAFLVQNLEADAGVQITASHNPAADNGIKFFGNDGFKLSDQLEYEIEQLLDESEDTLPRPSADGLGVVNNYPEGVQKYLEFLQKTIPTDLNGMRIALDGANGATSGLLARLFADLGTDFVTLGTEPNGLNINDGVGSTHPAALAELVKENDVQAGLAFDGDGDRLIAIDENGETVDGDKIMFITGKFLNEQGRLKHHAVVSTVMSNIGFYKALADNDMTSIKTAVGDRYVMEEMIKSDHNLGGEQSGHIIFRDWATTGDGLLTALQLLYVMKETGKTLSELADPVHIYPQKLVNITVADKEEIQHDPDVIAKIAEVEAQMAGDGRVLVRPSGTEPLLRVMVEAPTQELVEKYTESIANVVREKSEL
>NZ_CP046062.1|WP_146956225.1|152571_152937_-|DUF1304-family-protein
MNILINTLSVLVAIEFFYIMFLETFATTSKATGKTFSMTSADLANKKVQILFKNQGIYNGLIGIGILYAVIFTTNSRTLLIPIMVYIGFVGLYGSLSSGNKMIVVKQAGLAIITLILMLLS
>NZ_CP046062.1|WP_146956226.1|152980_154927_-|DNA-mismatch-repair-endonuclease-MutL
MRIHELSNLLANQIAAGEVIERPASVVKELVENAIDAGATQIDVIVEEAGESLIRVVDNGEGINPEDVPLAFTRHATSKISNRHDLFNIMSLGFRGEALPSIAAISDVTLNTTTQDAPSGIMYHIKGGKQVSATPANGRLGTVVSVRDLFYNTPARLKYLKRPQTELSRIADIMNRIALSYTNVAFTVTSDGRNILQTNGDGNQQRVIAAIYGRDVAQKMRAIAGEDDDFNITGFVSLPELTRGSRDYLTILVNGRFIKNFSVSNAVIRGYGSKLMVGRFPMGVININTDPLLVDVNVHPQKAEIRLSKEVELSALIIDTVKSCFADENLIPDAYENLYGQTQSKKNETPVPKQVAPWAKSDIGHTTTVNTGIDSNEIVINQEADLTDDAVNTFTNKYAHEPNLPIFDDEITVQVSEDISSYNKPEIPTQEELDISPKKPSGFPSLEYIGQMHGTFLFAQSSEGFYLVDQHAAQERVKYEYYRKEIGQVGTDKQRMLVPITINYSVADMLKIADKESELESIGLALEPFGPTTVIVREHPTWFEKGQEAETIQEMVDWILRDGNLTVAEFRERTAIMMSCKRSVRANMHLSDLQARTLLEDLAKADNPYNCPHGRPVVTSFTLTEMEKMFKRIQDSHEAWEEYDNHPY
>NZ_CP046062.1|WP_146956227.1|154931_157496_-|DNA-mismatch-repair-protein-MutS
MAKVAETPMMVQYHEIKSQYPDAFVFYRLGDFYELFEDDAVLGAKLLELTLTARNKNSENPVPMAGIPHHAAQNYIDILVDQGHKVAIVEQMEDPATAKGMVKRDVVQLITPGTKLNTGMGNDKQNNYLAAVLPRDNRYYLSYIDLSTGELKATTLKRFSDVIDELSSLEVKEIVLLKDDETTELGIANKLAERGLVISTQTETTVNATVSFLTQSLVHENEVQVTTILLNYIFDTQRRNLDHIIPAQNYERLAYLKFNQDTRTNLDLVKNARTKKKAGSLLGLIDETKTAMGGRLLKQWLLRPLRDTEDINERLDMIEAFQNEFFVRGELQDHLKSVYDLERLAARAAMGTMNARELVQLKRSLSAIPGIKSVLSSSQGILNYASQRLEDMSDLAGLIDEAIVDDPPISIREGDIINDGFDSTIDEYRNVLSQNQKWLAQLESDERAATGINSLKVKYNKNFGFFIEVSRANISKLEEGRYERKQTLTNAERFVTPELKEHERLINEAQLKRTEREYELFITIRERVKANISRLQKLARQVAQLDVLASLADVADKHRFVRPTFTDDNIINIKQGRHPVVESLLEAGEFVANDVNLNQNTAMQLITGPNMAGKSTYMRELALIVILGQMGSFVPAESAVLPIFDQIFTRIGANDDMAMGQSTFMVEMAEANLALQEASAHSLILFDELGRGTATYDGMALAQAIIEYLDAHVHAKTLFSTHYHELTALADKHENITNVHVGAVEDETGELHFLHQIQQGPADKSYGIHVAALAGLPDELIANATTILSGLENQEASVPEPKVSALSEQVALFNVSDVDPKTEMLFQKLDNVNISTMTPLEALNVLAELQKLRK
>NZ_CP046062.1|WP_146956228.1|157633_159031_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAKANRVYKTKAPVVKNQEIEATVIDITYQGMGVVKVDNFPIFVVDAIPGEIVRVIITKVLKSYAFGRVTRRVQESENRVQNANKIAITTGIAPLANLKYEAQLTFKQRQIEELFKKVNVDVDVAPTIGMENPTGYRNKAQVPVQMINGKLETGFYRRGSHRLVPIEDFYIQDPKVDEAVRITRNILRELGVSAYEEETKKGVIRHIMARRGYYSHELMVVIITNTKKLPNSDLIAEKLSAKLPELTSVIHNINNHDTNVIMGQWNETIWGEDDIHDQLMGKDFVIGPNSFYQVNPQTTSTLYSLAAEKANLKPTDIVVDAYSGIGTITLSVADKVKKIYGVDVVEGAIEDAEKNAKNNQITNVEFVLADAPEQMAKWADEGLKPNVVFVDPPRKGLTQELIDAVKAMNPETFVYISCNPATLARDAVQILAAGFEIEGAVQPLDQFPQTTHVESITVFKKVEDK
>NZ_CP046062.1|WP_146956229.1|159111_160098_-|YegS/Rv2252/BmrU-family-lipid-kinase
MKRARIIYNPTSGREAIKREMLDILAVYEKAGYETSAFATTPEPLSAAKEARRAAEVGFDLIVAAGGDGTINEVVNGLSPLTKRPMMAVIPAGTTNDYARALKLPRDEPLEAAKVILQNETIKMDIGKIEKDNEIKYFMNIAALGTISEVTYAVPSLMKSLYGYLAYLVKGAELITRVKAVNAKVIFDDGEYSGKTSMIFLALTNSVGGFESIVPDAKLDDGRFTLLIIKEANLAQMLQMVAQMINGGKHIDNPKLIYKKTNKVEILPLDNDQMKVNLDGEYGGDAPMKFTDLQQHIEFVANRSGMSENSVSVAKRKFVEEAEKLDTK
>NZ_CP046062.1|WP_146956230.1|160178_161618_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MGTGNFETTIGLEVHVEMQTNSKLLSPSPVHYGDKPNTNTNVIDFGYPGVLPVANKGALEYGMRVALALHAQISPMIRWDRKNYFYPDNPKAYQTTQSQTPIGTNGYLDVTLADGTVKRIHIAEMHVEEDAGKNTHGSDGYSYVDLNRQGTPLIEIVSEPDIASPDEAYAYLEQLRQVILFTGVSEAKMQEGQMRADVNVSLRPFGSDQYGTKVEMKNINSFNYVRNALIFEEKRQAEVLRSGGVIQQETRRYDEPTKSTILMRVKEGADDYRYFPEPDLSPVVIDQKWIDEVAADLPKSASERREAYVNNLGIEPYDAEVLTQTLAMSDFYDATVSLGADPKRAANYLIGDVNAYMNKNQVELQDTRLTPDHLAGMIKLIEDGTISTKQAKQVFEAIMIGEEPEAFAKKHGLVQLSDPDLLLGWITEVLDNNPQSIEDFKGGKDRATGYLIGQLMKMSKGQANPSVLNKLLLSELKKR
>NZ_CP046062.1|WP_146956231.1|161633_163100_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MTINYFEHDLTSLHNQLVNKEVSAVDLTRASLDNISKTDDKLNAFISTNPDEAIAQAQKIDEKSDFSNVLTGLPLGLKDNMATKGIQTTGASHILEGFKPVYNATVVEKLQNLGAVSVGKTNMDEFAMGGSTETSYYKQTSNAWDHSKVPGGSSGGSAAAVAAGQVPFALGSDTGGSIRQPAAFNGIVGLKPTYGRVSRWGLFAMASSLDQIGPFTRTVKDNATVLNAIAGFDEKDSTSSQREVPDFTAKLSGDVKGLKIAVPKEYFGEGIDPKVAKQVKAAIAQLEALGATVDEVSLPHTKYGVAAYYIIMSSEASSNLQRYDGVRYGFRADDVKNLEDLYVKTRSEGFGDEVKRRIMLGTFSLSAGAYDAFFKKAAKIRTLLIEDFNKVFENYDVIVGPTAPTAAYGLGEEVDDPTAMYLADVLTIPVNLAGLPGLSVNAGFVDGLPVGLQIIGKPFDEQTVYQTGYAYEQASRLFEQHPDVAKEY
>NZ_CP046062.1|WP_146956232.1|163101_163410_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MAETIITRDEVAHVAGLAKLAFNDADLDQFTTQLGDILNIFDTLNEVNTDDVIPTYSVTENVNHLREDVANNWNQKQELLNNAPLEAADLIKVPAILNGEGE
>NZ_CP046062.1|WP_011680241.1|163629_163899_+|30S-ribosomal-protein-S15
MALTQERKNEIIKAYARHEGDTGSAEVQIAVLTADINELNTHMAAHKHDFHSQRGLMKKIGSRRNLLRYLRNTDIQRYRELIQRLGLRR
>NZ_CP046062.1|WP_002815336.1|163948_164200_+|30S-ribosomal-protein-S20
MPVIESAIQRVRLTKKQHDRNEPQLSAYRTAVKKFEKAAAAGTDNLAELYKAASSAIDHAYSKGLIKKNKASREKSRLAKYVK

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Crispr_ID: NZ_CP046062_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046062_2

258143-258304

Orphan

Consensus_repeat	Method
NTTTTCATCTGTTGATGT	CRT

4 spacers

The CRISPR arrays of NZ_CP046062_2

>merge|NZ_CP046062|2|258143-258304|CRT
TTTTTCATCTGTTGATGGAATTGCTGTTGTCACAGGTTTTTCATCTGTTGGTGTGTTTGCCGCTGTTGCAACCTTTTCATCTGTTGATGTGTCTACTGTTGTTGATTTTTTTTCATCTGTTGATGTAGTTGCTGTTACTACAGCCTTTCCATCTGTTGATGT

>NZ_CP046062|2|2|258143-258304|CRT
TTTTTCATCTGTTGATGG	AATTGCTGTTGTCACAGG
TTTTTCATCTGTTGGTGT	GTTTGCCGCTGTTGCAAC
CTTTTCATCTGTTGATGT	GTCTACTGTTGTTGATTT
TTTTTCATCTGTTGATGT	AGTTGCTGTTACTACAGC
CTTTCCATCTGTTGATGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046062.1\|WP_146956318.1\|253689_254097_+\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	unknown
NZ_CP046062.1\|WP_146956326.1\|263949_264393_-\|DUF3290-family-protein	unknown	unknown	gnl\|CDD\|378693
NZ_CP046062.1\|WP_146956324.1\|262326_263217_-\|prenyltransferase	unknown	unknown	gnl\|CDD\|260125
NZ_CP046062.1\|WP_146956327.1\|264525_265863_+\|C1-family-peptidase	unknown	unknown	gnl\|CDD\|238328
NZ_CP046062.1\|WP_146956314.1\|242840_243446_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
NZ_CP046062.1\|WP_146958302.1\|243584_244004_+\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_CP046062.1\|WP_146956311.1\|240780_241449_-\|peptidoglycan-binding-protein	unknown	unknown	unknown
NZ_CP046062.1\|WP_146956322.1\|259747_260986_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226167
NZ_CP046062.1\|WP_146956328.1\|265993_267613_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP046062.1\|WP_146956329.1\|267641_267926_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP046062.1\|WP_146956316.1\|248970_252843_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223003
NZ_CP046062.1\|WP_146956313.1\|242165_242816_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|225462
NZ_CP046062.1\|WP_146956323.1\|261146_262142_-\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240662
NZ_CP046062.1\|WP_146956317.1\|253293_253683_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP046062.1\|WP_146956325.1\|263314_263953_-\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP046062.1\|WP_146956320.1\|258832_259054_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP046062.1\|WP_146956321.1\|259014_259716_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273772
NZ_CP046062.1\|WP_146956315.1\|244060_248635_-\|hydrolase	unknown	unknown	gnl\|CDD\|334895
NZ_CP046062.1\|WP_146956312.1\|241555_242059_-\|DUF1440-domain-containing-protein	unknown	unknown	gnl\|CDD\|369297
NZ_CP046062.1\|WP_011680350.1\|252928_253141_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
NZ_CP046062.1\|WP_146958302.1\|243584_244004_+\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	1.54244e-27
NZ_CP046062.1\|WP_146956326.1\|263949_264393_-\|DUF3290-family-protein	gnl\|CDD\|378693	pfam11694, DUF3290, Protein of unknown function (DUF3290). This family of proteins with unknown function appears to be restricted to Firmicutes.	6.95274e-57
NZ_CP046062.1\|WP_146956324.1\|262326_263217_-\|prenyltransferase	gnl\|CDD\|260125	cd13962, PT_UbiA_UBIAD1, 1,4-Dihydroxy-2-naphthoate octaprenyltransferase. Human UBIAD1 is an enzyme involved in the synthesis of MK-4. Menaquinones (MKs, also called bacterial forms) are one of the two forms of natural vitamin K, the other being the plant form, phylloquinone (PK). All forms of vitamin K have a 2-methyl-1,4-naphthoquinone (menadione; K3) ring structure in common. At the 3-position of the ring, PK has a phytyl side chain while MKs have several repeating prenyl units. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.	3.2596e-59
NZ_CP046062.1\|WP_146956327.1\|264525_265863_+\|C1-family-peptidase	gnl\|CDD\|238328	cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure with the active sites imbedded in the central channel. The bacterial homolog of BH, called pepC, is a cysteine aminopeptidase possessing broad specificity. Although its crystal structure has not been solved, biochemical analysis shows that pepC also forms a hexamer. .	0
NZ_CP046062.1\|WP_146956314.1\|242840_243446_-\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	1.14827e-100
NZ_CP046062.1\|WP_146956313.1\|242165_242816_-\|NAD(P)H-binding-protein	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	3.46018e-44
NZ_CP046062.1\|WP_146956323.1\|261146_262142_-\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240662	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains. D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	2.51616e-174
NZ_CP046062.1\|WP_146956322.1\|259747_260986_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	3.24678e-67
NZ_CP046062.1\|WP_146956328.1\|265993_267613_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP046062.1\|WP_146956329.1\|267641_267926_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.00283e-41
NZ_CP046062.1\|WP_146956316.1\|248970_252843_-\|hypothetical-protein	gnl\|CDD\|223003	PHA03169, PHA03169, hypothetical protein; Provisional.	5.57978e-12
NZ_CP046062.1\|WP_146956321.1\|259014_259716_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|273772	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis. [Regulatory functions, DNA interactions].	8.59703e-06
NZ_CP046062.1\|WP_146956317.1\|253293_253683_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.44859e-10
NZ_CP046062.1\|WP_146956325.1\|263314_263953_-\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	2.01917e-54
NZ_CP046062.1\|WP_146956320.1\|258832_259054_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.04204e-13
NZ_CP046062.1\|WP_146956315.1\|244060_248635_-\|hydrolase	gnl\|CDD\|334895	pfam02324, Glyco_hydro_70, Glycosyl hydrolase family 70. Members of this family belong to glycosyl hydrolase family 70 Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) catalyze the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules, EC:2.4.1.5. This family roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this family also contain the Putative cell wall binding domain pfam01473, which corresponds with the C-terminal glucan-binding domain.	0
NZ_CP046062.1\|WP_146956312.1\|241555_242059_-\|DUF1440-domain-containing-protein	gnl\|CDD\|369297	pfam07274, DUF1440, Protein of unknown function (DUF1440). This family contains a number of bacterial proteins of unknown function approximately 180 residues long. These are possibly integral membrane proteins.	1.98799e-57
NZ_CP046062.1\|WP_011680350.1\|252928_253141_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000184838

>NZ_CP046062.1|WP_146956318.1|253689_254097_+|ImmA/IrrE-family-metallo-endopeptidase
MYIDDSISNYLDQIVQKNGLILIHIDGKELDPDVANGRKRAIIINNNYKTNFSRYFRIAHEIAHLIYTRSNNTYTFSPLSKLSDETEANLHAIQILIDFYFSEIPLKQDRWERRFHFIEAFGLGQITHLVEKKLA
>NZ_CP046062.1|WP_146956317.1|253293_253683_+|helix-turn-helix-domain-containing-protein
MVTKEQFGQRIKHIREKKHYTVRQTALQGNFSSAYLSQIENGNKNIPKVDTLYRIAKGLRISKDEILHIAGITAHTSPKHSNSVDLGKQFTDDELLLSFEGKPLSPEYREAILSILRTLPDADTKTKKD
>NZ_CP046062.1|WP_011680350.1|252928_253141_-|helix-turn-helix-transcriptional-regulator
MSLTLQFRDATSVRKEIAIRGESIAIFSKRIGVNYSLMTEYLNNKKHPSPPTAKKIAKGLDKEIKDIFFI
>NZ_CP046062.1|WP_146956316.1|248970_252843_-|hypothetical-protein
MENRKDQYKVYRSGKLWITATVAVALFNASINIVSADDGKNIEQSSLVQNSRDVVDVSDNQTPLVDDTEILNAVKSAESVGVTVTQEPSQSKIVSDSEDITKVKNDIESDYAQQIAELQHATKTQQQNNQIFDQCTEDYETALYKGAQQNKDGKTQVATSAAKQALTFDTSKPADESSPTSNIEPSKIYTGIGSHANLSDSTKVWEYEGPQVLNATIEKTWSGSGSIEDSDGNKRSVDFHEIFHDFQLQNGNWNDSNNYKESGIPHIAISSNAVDNVWATNLNWQTTFWFTYSDNHEVVPISKVPGSNEEAKVYFLSGSLSSTNFAGPEWDNWNGNRKEYVQTNDAKTAIINEESTIGLDYISAEGIVDNAPGGFAYVNTSADFQSPNYDEDTNPQHYAIEEGVSFTDFTTDKPTLYIGAVPMNKNARWWHENHNMNSHELAFLKKPTKLDPVTAAYHLNTIMYEKNNSIQPTVAEIPDLVDEGHQENEESNETIAPENEQKGYGAATSPTTKDASVKNQSEVIVHYVLKQINGKELQATQTIKGTSGESYYDKVGNFISNNPDGDVTTYEVPETLHQELAGITDSNDGLLHYTYIADGNGGVFGEKKDIANPKTNVWVIYTYSVDGKNGLDGKDGEKGVDGQNGIDGRDGKDGVDGHNGTDGKDGRDGQNGNDGRDGKDGVDGHNGTDGKDGRDGHNGTDGKDGRDGQNGNDGKDGENGIDGRNGNDGKDGKNGVDGQNGNDGKDGINGINGRNGNDGKDGKNGVDGRNGNDGKDGKNGVDGQNGNDGKDGKNGVDGQNGNDGKGGKNGVDGQNGNDGKDGINGINGRNGNDGKDGKNGVDGRNGNDGKDGKNGVDGRNGNDGKDGENGIDGQNGNDGKDGKNGVDGRNGNDGRDGKDGVDGQNGNDGKDGKNGVDGRNGNDGKDGKNGVDGQNGIDGKDGKNGVDGQNGNDGKDGKNGINGRNGNDGKDGKNGVDGRNGNDGKDGKNGVDGQNGIDGKDGKNGVDGQNGNDGKDGKNGINGRNGNDGKDGKNGVDGRNGNDGKDGKNGVDGRNGKDGVDGRNGIDGKDSVNGRDGRNGLVGQNSLDNQVVSNSIESEDITNRVDHENMRDSTRNFEKNILSTVKTNSNVMGQVTVKDEYAPIGNDNQAQEKQVLAKDVSSVINQKLENYYHNSGESTFSSSQLKENNLTAAVEERISYHKNEPKQNTEKNQQTDALVTKTHFNDTSNINQTGDTLKTYKDIEKQKMKQSQNSLQLPKTATKQYPVSVLEVITLGMLLIFVKLHKRVRI
>NZ_CP046062.1|WP_146956315.1|244060_248635_-|hydrolase
MPFTEKVMRKKLYKVGKSWVVGGVCAFALTASFALATPSVLGDNSVPDVSGNNVQSFSDQTTDTQHNTTGTEKDSQVQPATADDNVTTAVVNDTTQSADSNVTEKQADTHALDHEKVGNKEEVAQVNENKESKASATDHYSDKKTTDETQQVSGKYVEKDGSWYYYFDDGKNAKGLSTIDNNIQYFDESGKQVKGQYVTIDNQIYYFDKDSGDELTGLQSIDGNIVAFNDAGQQIFNQYYQSENGTTYYFDDKGQAATGIKNIAGKNYYFDNLGQLKKGFSGVIDGQIMTFDQDTGQEISNTTSEIKEGLTTQNTDYSEHNAAHGTDSEDFKNINGYLTASSWYRPTDILRNGTDWEPSTDKDFRPILSVWWPDKKTQVNYLNYMADLGFISNDDSFKTDDSQSLLNEASNYVQKSIEMKISAQQSTEWLKDAMAAFIVTQPQWNENSEDMSNDHLQNGALTYVNSPLTPDANSNFRLLNRTPTNQTGEQAYNLDNSKGGFELLLANDVDNSNPVVQAEQLNWLYYLMNFGTITANDADANFDGIRVDAVDNVDADLLQIAADYFKLAYGVDQNDDTANKHLSILEDWSHNDPLYVTDQGSNQLTMDDYAHTQLIWSLTKSSDIRGTMQRFMDYYLVDRSNDSTENEAIPNYSFVRAHDSEVQTVIAQIVSDLYPDVENSLAPTTEQLAAAFKVYNEDEKLADKKYTQYNMASAYAMLLTNKDTVPRVYYGDLYTDDGQYMATKSPYYDAINTLLKARIQYVAGGQSMSVDNNDILTSVRYGKDAMTASDAGTAETRTEGIGVIVSNNAKLQLEDGNTVTLHMGAAHKNQAYRALLSTTADGLAYYDTDDNAPVSYTDENGDLVFTNQSIYGVQNPQVSGYLAVWVPVGAQQDQDARTASDTTTNTSGKVFRSNAALDSQVIYEGFSNFQAFATDNSEYTNVVIAQNADQFKQWGVTSFQLAPQYRSSTDTSFLDSIIQNGYAFTDRYDLGYGTPTKYGTADQLRDAIKALHASGIQAIADWVPDQIYNLPEQELATVTRTNSYGDDDPDSDIDNALYVVQSRGGGQYQEMYGGAFLEKLQALYPSLFKVNQISTGVPIDGSVKITEWAAKYFNGSNIQGKGAGYVLKDMGSNKYFKVVSNTEDGDYLPKQLTNDLSETGFTHDDKGIIYYTLSGYRAQNAFIQDDDDNYYYFDKTGHLVTGLQKINNHTYFFLPNGIELVKSFLQNEDGTIVYFDKKGHQVFDQYITDQNGNAYYFDNTGVMLKSGFTAIDGHQQYFDQNGVQVKDKFVVGNDGYKYYFEPGSGNLAILRYVQNNKGQWFYFDGSGHAVTGIQTINGKKQYFYNDGHQSKGEFIDADGDTFYTSATDGRLVTGVQKINGSTYVFDNTGNLVKNRYYQLTNGKYMLLDDNGRAKTGFVLQDDALRYFDQNGEQVKDAIVVDPDTNLSYYFNATQGVAVKNDYFRYQDNWYLTDANYQRIKGFKVVDDSLQHFDEVTGVQTKDSAFVSDQGKVYQFDNNGNAVSV
>NZ_CP046062.1|WP_146958302.1|243584_244004_+|Rrf2-family-transcriptional-regulator
MKYSTKLSDAIHILTYIVVNQGTDLSSTQIAKSVNSNPVVIRRIMSQLKNNGCLLSSNGRANPKLARPADTISLLDIYHAVEEDTSFLKIDTKTNQNCNVGSQIQITLNKYYNQVQEAAEKEMNKIKLADIINEFQTDH
>NZ_CP046062.1|WP_146956314.1|242840_243446_-|nitroreductase-family-protein
MVNQDYIETIKKRRSIYALGKNVTDHNEDIAALIQSAIKESPSSFNNQTVRAAILFGESSDKLWEIVAERLKSEVPDEESYKATRQKIDSFKAGVGTILFFTDDSIVEQYQEQLPLYAENFPIWADQANGMAQINVWQALATNGIGASLQHYNPLIDADVHTIFDIPESWNLRSQMPFGSIEAPASTKEYMTDDVRFKIFK
>NZ_CP046062.1|WP_146956313.1|242165_242816_-|NAD(P)H-binding-protein
MTIKIGIIGATGMAGSAVYQEAFNQEFDVTAIVRSTDKAHQTLGQNAKVLEKDAFALTKADLLQFDVVINAFATAPTLAYQHIDLAAHLIGLLRETTAPRLIFILGAGSLMTGEDNHLLLEDLKKLPDAASWVSIPDNQKKELDFLRNIDNVNWTGVSPGSTFQAGEATQYKLGTDHLLFGENNESITNSGTMAKAIMSEINKPSAEKKRFTVVNA
>NZ_CP046062.1|WP_146956312.1|241555_242059_-|DUF1440-domain-containing-protein
MLEFMLAVVVIGTVAGIISGMVKIGWEAILPPRTQARDETNPPQRLLQQMGVPRKWTHAYFYYATDQKVHYVALIMHFSFSIAFGILLVLFDQFFPMAMLGQGSVYGIVIWIAFHIIILPATKTIPSALKQPFSEHLSEFLGHIVWGWSMYLIMIALLVVTNWLPNY
>NZ_CP046062.1|WP_146956311.1|240780_241449_-|peptidoglycan-binding-protein
MDYMMKRIMIISALLTGLSLVVLGTQLETENQPAEAASMNKTVNVKAVSSAISSFTDVQLTTSKATPKKVVAPSENNEVKANSQSSESQEKVVDAPQVTGVSSEVVTTDTPKAIATVNETQSMQAVTASNQSTQSSTAPEMPVASSDIQWLIQHESGGNVNAQNGAYYGIGQLSENYYAQYVPGKDYHGNYAVQLEAMQKYISARYGTVANAIAHWQANNWY
>NZ_CP046062.1|WP_146956320.1|258832_259054_+|helix-turn-helix-domain-containing-protein
MNNKKGSVIKEIRKIRGISQQRLGVLIGSQSMVSRIENNKTEPTDHTVLLLCNALNISFEEYFSAIFGKKKTT
>NZ_CP046062.1|WP_146956321.1|259014_259716_+|XRE-family-transcriptional-regulator
MFLGYFWQKKNNLKKLITVLNQHYQDNNRHKLTQLTQLLQNDAVSNPSDPFRRHYYLMSLSTLYHLDFLVASNDDQNELINYFFNISYWQFYDLCLLANVVNMIHVERSAPYISDILKQYATNNMPMASVETVSKILVNALETSIIQKKDDFTRYLLDKIKKYKFNTDDFKFQTWLLFWTGVFENNNNKIRHAYNIATYLHQNITLKNFDKFLTITQTSSPFFEGKKKDAPKI
>NZ_CP046062.1|WP_146956322.1|259747_260986_-|PTS-sugar-transporter-subunit-IIC
MSIKAEGEKWSAKESQDLRNEEYARKAKENAPVEFSGQTDLHLKDFFFKVLSGSAQGILIGVLPSAVMKYIIQYSGLGTTAFGANLSAILTLFTSLIPFLIGMAVALQFKMKSLDVGVVAIATAVASGSIKWAVAPKGWLNPVTGLNSVAPANVYIASGAGDVINAMIVSAIAVFVTWLVARYLKGFGSVAIILSPILVGGGVGLIGKMIAPYVGDVTTWIGQLVETFTKLAPIPMAMLIAMAFAIIIITPVSTVGIALAISLSGIGSGAAAMGVVATTIVLLINSWKVNKPGVTVAIALGAMKGMMPSVFAKPVTMLSFLLAAAISGIPVALFNIQGTPTTAGFGYIGLVSPIQSMVKDPTVPSTVMNHFINPAIAILAWLVIPIIAGFIAQFVFSKLLKLYTPMDFQQDL
>NZ_CP046062.1|WP_146956323.1|261146_262142_-|D-2-hydroxyacid-dehydrogenase
MKIFAYGIRDDEKPSLEEWKAANPDIEVDYTQELLTPETAKLAEGSDSAVVYQQLDYTRETLTALANVGVTNLSLRNVGTDNIDFDAAREFNFNISNVPVYSPNAIAEHSMIQLSRLLRRTKALDTKIAKHDLRWAPTIGREMRMQTVGVIGTGHIGRVAINILKGFGAKVIAYDKYPNAELQAEGLYVDTLDELYAQADAISLYVPGVPENHHLINAEAIAKMKDGVVIMNAARGNLMDIDAIIDGLNSGKISDFGMDVYENEVGLFNEDWSGKEFPDAKIADLIARENVLVTPHTAFYTTKAVLEMVHQSFDAAVAFAKGEKPAIAVEY
>NZ_CP046062.1|WP_146956324.1|262326_263217_-|prenyltransferase
MMTYKQFLDLVEIRVVVPSIAPLLVGLAYSQWQYGRVNWLNTLLLMIATVTVHLAVNTFNRYEDNKRQKENSFLRESDDIEVITDKQVLHVAAVLALIAMVAGVIVALRTDYITWLIGIVSFLIGYFYSAGPKPITNTPFGEIVSGITMGYFIFVAQVYVNTRMVPTGNVLFQWFIVSLPLTIFIAEIMFANNIADYDEDQVNNRHTLVHYIGIKNAKKIYVFWAILAFVEILLVTLIGWLPATSYALLMLLPIIINNARMFVNHPVKKETFILAIKNLVVVFMGMLVTLLVGLWL
>NZ_CP046062.1|WP_146956325.1|263314_263953_-|DUF421-domain-containing-protein
MSIYLPILIKLAIGLVALIIQINIMGKGNLAPTNALDQVQNYVLGGIIGAVIYSDTITVFQFTIVLIIWTMLVMTFKFLKEHNRYVKLLIDGEPKVVIEQGKVNIKNVLSSGLSASDLMFKLRSQSVYDLSQVKRAVLEINGQLTVILAGEENMKYPIIFDGQINTDVLDVIDHDEAWLTDIVKKQGYGSINDIFVGEYIDSKVRLTPYEIK
>NZ_CP046062.1|WP_146956326.1|263949_264393_-|DUF3290-family-protein
MNFYSVDYLIKQTNINDTIGKYLMVVVFVLMAVGAVASVRNRLQTRYRELSIIALLLFLFLAGARYTDYQQAKSQDDQKTQMAAFVNKFAQTQGVSKDKLYFNSTTVSDGMLVKMDKKFYRLTISADQQSYSLTRAYLINSKVKVVK
>NZ_CP046062.1|WP_146956327.1|264525_265863_+|C1-family-peptidase
MSTQITNQQIKDFRTAINDKHNHIIRRAVTKNGIHRASFDQEIVNSNTPIFSIDLDTGKVANQKQSGRCWMFAALNTMRHDIKDRFHISDEFQLSQSYTLFWDKFEKANYFYENVLKTATEPLDSRRVAFLLSTPQQDGGQWDMIVSIIEKYGLVPQSVYPESNASSATAELNRTLNTLLRHDATVLRGLVAQQASEDNIFNVRNEMLANVYRLLSLTLGEPPVQFDFEYRDKSNNFHVERQLTPQDYYQKFVNWDLDEYISIINAPTDDKPFDATYNVDMLGNVIGGRDVKHLNVDINKMKAFAISQLKNGQSVWFGVDMSPQVDRENGLMASGIFASDDLFHVDSTMTKAQRLDYGESLMTHAMVLTGVDLDENDQPTKWKVENSWGEKVGKKGYFTMSDDWMSEYAYQIVIKKEYLSSELVNIYDHSKPILLAPWDPMGALA
>NZ_CP046062.1|WP_146956328.1|265993_267613_-|chaperonin-GroEL
MAKELKFSEDARAKMKAGVDKLADTVKTTIGPKGRNVVLEQSYGAPTITNDGVTIAKAIELEDHFENMGAKLVAEVASKTNDIAGDGTTTATVLTQAIVGEGLKNVTAGANPVGIRTGIEKATAAAVAKLHEMSHTVNTKDEIAQIASISAANEEVGALIAEAMDKVGNDGVITIEESKGIETTLDVVEGMQFDRGYMSQYMVTDNDKMEANLDNPYILITDKKIGNIQDILPVLQSVVEQGRALLIIADDITGEALPTLVLNKMRGTFNVVAVKAPGFGDRRKAQLEDIAILTGGTVITEDLGLNLKDVTIEQLGQASKVNITKDNTTIVEGSGDKAAVATRVDTIKQQIAETTSDFDREKLQERLAKLAGGVAVINVGAATETELKERKYRIEDALNATRAAVEEGFVAGGGTALVNVIAAVSALSEEGDVQTGINTVIKALEAPVRQIVENAGLEGSVIVNKLKEQKEGFGYNAATDEWVDMIAAGIVDPTKVTRSALQNAASVSALLLTTEAVVAEEPKDDAPAAMPQGGMPGMM
>NZ_CP046062.1|WP_146956329.1|267641_267926_-|co-chaperone-GroES
MLKPLGDRVIIEVTEAAEETVGGIVLASNAKDKPVTGKVVAAGTGYVLNDGAIRDLTVKVGDEVLFDKYAGQEVSFEGQDYLALHEKDIVAVVE

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Crispr_ID: NZ_CP046062_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046062_3

879871-879973

Unclear

Consensus_repeat	Method
CCGACTTAGCTCAGTTGGTAGAGCAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP046062_3

>merge|NZ_CP046062|3|879871-879973|CRISPRCasFinder
CCGACTTAGCTCAGTTGGTAGAGCACCTGACTGTTAATCAGGTTGTCGCCGGTTCGAGCCCGGCAGTCGGAGTTTCGCCGACGTAGCTCAGTTGGTAGAGCAC

>NZ_CP046062|3|1|879871-879973|CRISPRCasFinder
CCGACTTAGCTCAGTTGGTAGAGCAC	CTGACTGTTAATCAGGTTGTCGCCGGTTCGAGCCCGGCAGTCGGAGTTTCG
CCGACGTAGCTCAGTTGGTAGAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046062.1\|WP_146957313.1\|867402_868047_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341358
NZ_CP046062.1\|WP_146957317.1\|868739_872267_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_CP046062.1\|WP_146957345.1\|886419_888510_+\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|376463
NZ_CP046062.1\|WP_146957347.1\|888542_890369_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP046062.1\|WP_146957324.1\|874381_874921_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP046062.1\|WP_146957318.1\|872295_872577_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP046062.1\|WP_146957328.1\|877159_878053_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_CP046062.1\|WP_146957336.1\|883920_884721_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP046062.1\|WP_146957342.1\|885877_886273_+\|DUF3021-family-protein	unknown	unknown	gnl\|CDD\|378668
NZ_CP046062.1\|WP_146957326.1\|874948_877051_+\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NZ_CP046062.1\|WP_146957322.1\|873088_874381_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_CP046062.1\|WP_146957315.1\|868172_868739_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_CP046062.1\|WP_146957349.1\|890559_891108_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP046062.1\|WP_146957332.1\|880701_881418_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_CP046062.1\|WP_146957340.1\|885423_885891_+\|LytTR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197918
NZ_CP046062.1\|WP_146957334.1\|882352_883801_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP046062.1\|WP_146957330.1\|878139_879627_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP046062.1\|WP_146957338.1\|884717_885446_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046062.1\|WP_146958327.1\|880097_880631_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211334
NZ_CP046062.1\|WP_146957320.1\|872658_873057_+\|septum-formation-initiator-family-protein	unknown	unknown	gnl\|CDD\|225471

Protein	Function_ID	Function_description	E-value
NZ_CP046062.1\|WP_146957313.1\|867402_868047_-\|CBS-domain-containing-protein	gnl\|CDD\|341358	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	2.12906e-07
NZ_CP046062.1\|WP_146957317.1\|868739_872267_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP046062.1\|WP_146957345.1\|886419_888510_+\|DNA-topoisomerase-III	gnl\|CDD\|376463	pfam01131, Topoisom_bac, DNA topoisomerase. This subfamily of topoisomerase is divided on the basis that these enzymes preferentially relax negatively supercoiled DNA, from a 5' phospho- tyrosine linkage in the enzyme-DNA covalent intermediate and has high affinity for single stranded DNA.	3.52947e-66
NZ_CP046062.1\|WP_146957347.1\|888542_890369_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.60037e-73
NZ_CP046062.1\|WP_146957324.1\|874381_874921_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	1.04942e-76
NZ_CP046062.1\|WP_146957318.1\|872295_872577_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	1.12897e-28
NZ_CP046062.1\|WP_146957328.1\|877159_878053_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	3.40613e-99
NZ_CP046062.1\|WP_146957336.1\|883920_884721_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.88438e-50
NZ_CP046062.1\|WP_146957342.1\|885877_886273_+\|DUF3021-family-protein	gnl\|CDD\|378668	pfam11457, DUF3021, Protein of unknown function (DUF3021). This is a bacterial family of uncharacterized proteins.	1.97154e-08
NZ_CP046062.1\|WP_146957326.1\|874948_877051_+\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP046062.1\|WP_146957322.1\|873088_874381_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	1.94702e-73
NZ_CP046062.1\|WP_146957315.1\|868172_868739_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	2.41752e-92
NZ_CP046062.1\|WP_146957349.1\|890559_891108_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.38411e-07
NZ_CP046062.1\|WP_146957332.1\|880701_881418_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	5.74831e-130
NZ_CP046062.1\|WP_146957340.1\|885423_885891_+\|LytTR-family-transcriptional-regulator	gnl\|CDD\|197918	smart00850, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	5.70449e-18
NZ_CP046062.1\|WP_146957334.1\|882352_883801_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.98683e-119
NZ_CP046062.1\|WP_146957330.1\|878139_879627_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP046062.1\|WP_146958327.1\|880097_880631_+\|pseudouridine-synthase	gnl\|CDD\|211334	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.	9.09771e-101
NZ_CP046062.1\|WP_146957320.1\|872658_873057_+\|septum-formation-initiator-family-protein	gnl\|CDD\|225471	COG2919, COG2919, Septum formation initiator [Cell division and chromosome partitioning].	2.53162e-05

>NZ_CP046062.1|WP_146957330.1|878139_879627_+|lysine--tRNA-ligase
MAEEKALNDQMLARRQKLATIVSDLHLDPFGKRFERTAKAEELHKLYDDSSLEELENAKHEVVIAGRMIAKRGAGKVIFADFRDVSGKIQVYAKRDDLADNYPIIKRADLGDFLGIKGIMMKTEAGELTVLATELTHLSKALRPMPDKFHGISDVETRYRKRYLDLIANEDSFKKFQKRSHIISAIRAYMDKNDFLEVETPILQTEAGGAAARPFITHHNALNIDMYMRIATELYLKRLVVGGMERVYEIGRIFRNEGMDPKHNPEFTTMESYAAYMDFNDVMDETEGIFKAAAAVVSDDLKVTYQGTDIDLGSKFARKHMIDLIKEQTGIDFWQEMSIEDAQKLADDKHVKYEKYWGVGHIINAFFEEFVEDTLVQPTFVYGHPVEVSPLAKKNSDDPRFTDRFELFIMGSEYANAFTELNDPIDQRARFEAQAAERENGNDEAEGIDEDFIEALEYGMPPTGGLGIGIDRLVMLLTDSDTIRDVVLFPTMRPE
>NZ_CP046062.1|WP_146957328.1|877159_878053_+|Hsp33-family-molecular-chaperone-HslO
MADQFIKAITKNKYFRTFAINGTNLVHQGAQIHETSRIAAVVLGRGLLATTLTAQAVLKGEETLSTKINGRGPIGNVVVEADTKGSVRGYVTNPNLETLINDAGQLDVAKAVGKNGFLQVTKFAPYSDPYIGQSQLISGEIGDDFTYYLAQSEQTPSVIGVSVHMNNDDTVAGAGGFLVQALPDATDEAIDQLEVALKNMKPLSEMIQEGYTPLEVLEEIFGKGEVDILQTAGIGLAAEPSKDAYAKMLLTLPATEIQAMIKEDHGAEIVGKFSGKRYFFTEEQLSEILKQIEKNNE
>NZ_CP046062.1|WP_146957326.1|874948_877051_+|ATP-dependent-zinc-metalloprotease-FtsH
MNNNKGGFLRSSVFYIFIFLAVVGMVYGLFGNDKTTTKTITSSEFIKALNDKELKSVTVQPGNSIYNVTGTYKKAQTASKDKGLSLFQPTQKVTKFTSTLLPNDASLKSVTDAATKTKTELVTKQAENSGFWLNLLVSLVPVLLIVAVFYLMMNQAGGGKGGQGGMMSFGKSKAKPSDPKDNKVRFADVAGAEEEKQELVEVVEFLKAPKKFVNLGARIPKGVLLEGPPGTGKTLLAKAVAGEASVPFFSMSGSDFVEMFVGVGASRVRDLFENAKKSAPAIIFIDEIDAVGRRRGTGMGGGNDEREQTLNQILIEMDGFEGSEGVIILASTNRSDVLDPALLRSGRFDRKILVGAPDVKGREAILNVHAKNKPLADNVDLKAIAQQTPGYVGADLENLLNEAALLAARRNKSKVDAADIDEAEDRIFQGPAKTNHNMSESERRTTAYHEAGHALVGLVRSEASVVRKVTIVPRGRIGGYALMTPKNDRYNLKYSEAKEQLAGLMGGRAAEIFMFNESSSGASNDFQQATGLARQMVTAFGMSDKLGMVQLEGNASVGYADQAGNRAYSEETARLIDEEVRRLAREAFDDAIAILRDNKDKLTAIAEALLEVETLDEKQIKDIYLTGTFTRKDIQDDTELAKAKSFEEAKAAADAKDSQAEQRFEKQDEEKSSDDHSESQSEDTDSTDKSETDDINSENK
>NZ_CP046062.1|WP_146957324.1|874381_874921_+|hypoxanthine-phosphoribosyltransferase
MDNDIQEVLYDQESIQKAAERLGKQITQDYVGSTPLFLSVLKGAYLWTADLLREVDLYAELEFIKISSYHGGVSSSDEITLVTDVRSDVRGRDIIILEDIVDTGQSLLFLKELLAKRGAKSIKVATLLDKIEGRKVEVDADYAGFNVRNEFVVGYGLDYEEHYRNLPYVGILKKEVYTK
>NZ_CP046062.1|WP_146957322.1|873088_874381_+|tRNA-lysidine(34)-synthetase-TilS
MTKKILQTIQQYKWPETVIVAVSGGVDSVVLAHALSKTKANLVIAHVNYRLREESDDDAVFVRQFATQAGAIFEEQVWQHIPEHAVEKAARQFRYDFFEDLAQKYHTNTIAVAHHADDQAETVLLKMIRGGQLQQMGGMQTKNHKVIRPFLSITKQELITYAQDNQLEWRQDKTNFDVDYTPRNLLRNDVLPKLTTVNQQAVRHINNMATQIAQQQRLIDHQAKIYASDIQNWQNIPILWQLPTLKYWLQKNKLFNIKENQLQQMVRLLSNTHKPNGKIALADNFEFIKSYQKISIQKQKNMAQVLTPVMLKLNQWHSFAKTTFMWTDSVPINGQSFIKFQLTRSLPYLSLRPAKASDKIALINGHKNLRRLAIDEKLTPQERTMMWVLATADDEVIAVHLRSNQWRINADFAVKENTQPYWLVCQIEET
>NZ_CP046062.1|WP_146957320.1|872658_873057_+|septum-formation-initiator-family-protein
MAGNFKRKQSNIAPLNPAIAREIKKSERANLEAAKYYRKAHARREKRILLIGGLIAMVFVVQLLIGQVKLHAANQELTNTQGRLEKVQKTNNDLTANTKRLKDATYLQQLLRDKYGYSKQGELVYNLPSDNN
>NZ_CP046062.1|WP_146957318.1|872295_872577_+|RNA-binding-S4-domain-containing-protein
MRLDKYLKISRLIKRRTVAKEIADQGRISINGKVAKSSSDVSTNDELEIRFGNKTLTVKVSKIVETTKKEESADMYEVISEKFQQDFRKIGDE
>NZ_CP046062.1|WP_146957317.1|868739_872267_+|transcription-repair-coupling-factor
MTLIDFLSDTLTIKKLNKQATVNSVQLLLGVNGTARAASIAALYRKNPRPMLVISDTQVHADQFFDDLSSLLENQVYNFPAEESIATEMAISSSELRLQRVQTLLALKTEKPIIVVTSLAGAERLVPKKQALEQAHLHVKVGDAYDLNVIKDTLMMMGYTPTKLVQTPGEFAHRGSIIDVYPITSDDPIRLDFFDDELDQLKSFDVTTQKSSTSLDEINIDPATDFIVSERQYDQAKLAIESAFSDYRTNLSGIDKKHATDGFASTQYMLNERERGSRLVPYATFFFDGQTTLLDYFPVDSLLIIDEYTRLMETRLQQMTRDQEWIEQQVESYQLLPKQTFRAEIADLLSSNQHATIYLANFQRGLNRIQFTNIEEVTTRPANQYYGQIKALKNDLIYAQESGNTMVLLIPDAKRRANFSRSLSELEVPITETRDVVTNKVQMMPGELSAGFEWPKLHLTVLTTHELFTQAKRSTPRTRKIANSERLKSYNELNVGDYVVHINHGIGRYEGLQTIEADGGKQDYLTVAYQQNAKIFIPVTQLNLIQKYVGASDVAKKPKLNKLGGSEWAKTKRQVAAKIEDIADDLLELYAKREAQQGYAFPPDDYDQIKFDDSFGYPETPDQIRSIEEIKSDMQKLRPMDRLLVGDVGFGKTEVALRAVFKAAHAGKQVAFLAPTTILVQQHYETMLARFSDFPEIKIGVLSRFQTPAQNKIIIEQLQNHEIDVVVGTHRLLSKDVDFVDLGLLIIDEEQRFGVKHKERLKQLRTSVDVLTLTATPIPRTLNMAMVGARDLSVIETPPANRYPIQTYVLAMDWKIVRDAIEKEIARNGQVFYLHNRVADLDRIVSQIEELIPSARVAAIHGQMSETQLESILYDFLNGQYDVLVTTTIIETGVDIPNANTLIIENADHMGLAQLYQLRGRVGRSTRLAYAYFTYPFTRTPSEEAEKRLEAIRDFTELGSGFRIAMRDLSIRGAGDLLGKQQHGFIDSVGYDMYTQMLKDTVAQKQGKQVTTTKPETDAELILGVLAYLPDEYVSDNAQKIELYSRIRQARTDAEFEDIESDMLDRFGEMPDEVARLLLVGQIKQLADQSQITNIRRQRKQLIITFNESATTSLAGEAIFETMVDVPLKAAVRTEKNNLQVIFTVNDVAESSIWLNILRNFLLVIIDKLSAKTFN
>NZ_CP046062.1|WP_146957315.1|868172_868739_+|aminoacyl-tRNA-hydrolase
MKFIFGLGNIGAEYDQTRHNIGFMAVDAFAIANHMSFSPSKQFAMVAKTIIDGESVMLIKPTTYMNDSGKAVRSILDYYDGDIDDVLVLVDDMDLPFGKMRFRAKGSAGGHNGLKSIMTHTGSQSFLRLKFGLGHPAHEQNVVVNYVLGKFTAAEKPDIDAMLDRSTQAITDWVQGATAPELSNRYNG
>NZ_CP046062.1|WP_146957313.1|867402_868047_-|CBS-domain-containing-protein
MFQKSLVIPKSELTTVTENATIQEVYDIFNNPENAHTRTMPILDESGKLFRGNVYKQHVFEHVAKNGNMNLPATAIMRNSTKFIYTNSKFYEVFFAIRDLPFIAVLDENHQFYGIFTHDALMDLLSQSWSVRSGGVAIAISTHNTQGDLNKISKIITRYSNIESLLSIQSEIKPLTVLFTLPLQEDSKQLDKLIKRLEKKGYHVSSVENLDRFK
>NZ_CP046062.1|WP_146958327.1|880097_880631_+|pseudouridine-synthase
MIVLFNKPYNVLTKFTDADGRQTLANYIDIPRVYAAGRLDMDSEGLLLLTDSGKLNHELTDPGNKAYKTYVVQVEGVPTKAQLKQLEQGVALKDGLTLPAKVKRIPYPKWLWEREKPIRIRKNQPTSFIQLKIKEGRNRQVRRMTAAVGIPTLRLIRTHIGEYHIADLKPGQYRIVK
>NZ_CP046062.1|WP_146957332.1|880701_881418_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRKWENIKMKKAQTDGAAAKVNSKYGIEIYAAAKQGGSPDPEANSTLKFVIERAKQAQVPKHVIERAIEKAKGSGNETFIEGRYEGFGPNGSLIIVDTLTSNVNRTATNVRTAFNKNGGTYGAAGSVSYLFDETGVIVFEGEDADATLETLLDAEVDVRDAEQQDDHIVVYTEPTALHQAIAALRENGVSDFSTTEISMLPQSEMTLAGEDLEIFEKLIDVLESDDDVQKVYHNVEI
>NZ_CP046062.1|WP_146957334.1|882352_883801_+|NCS2-family-permease
MEKLFQLKENKTTVRREIVAGITTFVSMAYIFFLNPQILGQAGVPTQAVFLAAILVAVFGTLFMGLFANVPFALAPGIGMQAYFTYTIVFGFGFTWQQALAIVFLVGVVDIVITLTHGRRAIVKGIPSELKAAIGGGIGLFVTYIGLKNAGFINFMIDPSNIMTLNGKPFTGEVHGAVNSILANGGVTPELTKFNNASTLLALIGFIILVVLVMRKVPGAFLISLIVTTLIGIPMGVTNTHIGAGTSVGHAFGELGQVFGQSLGAQGLGSLFNNWHHASLALVTIFAMGLTGLFDAIGTLIGIGNQTGIFSKEDQQSFESSNGFNSKMDRALVVDTFTTAFAGIVGTSNTTTFIESASGVAAGARTGLANVVTAAGFALMILFAPLVGVVPTAATSPLLILVGIMMMGEFKKISWESLEVALPAFFTSVFMAFSYSISYGIAAGFIFFIIVKFALGKFKEVSPVLLIVSAFFLLNFAVLAFM
>NZ_CP046062.1|WP_146957336.1|883920_884721_+|ATP-binding-cassette-domain-containing-protein
MLNIENLSVSYGKKVVLTVPKLSINKGEIIGVMGKSGSGKSTLVNSCLGLIPFTGQVKIDTDDVGILMQEQHYVDTMTNQKMIEGMLNTRIKRDKKLTDLIDFFDFSAQLSLRFKNLSGGQKQRMSLIMVLYQEPELLFLDEMTTGLDFESRQELISQLKVYFKQHQTTVLMVTHYAQEIKALADKLLIIDDGQLKAFDEPKNLFKQYIGYSAFIVDNHTEKSIKVQQPEDEYKVARRLIDDGDDFRRTQSDIELVYTEVMKGQRA
>NZ_CP046062.1|WP_146957338.1|884717_885446_+|hypothetical-protein
MIKKRKLVFEFQNLLGNIITLFFGFAFAPMMALVFGNSYANVPQALNQLYLSFFCTIPLSMVFVGFSSLFSQEVEQGFTLRAELFGYSRISQALHKFLALTVFVLLSSIIYSWIFLSHFNLPSPNVIIIGQMAIFQILNTAVYFIIIFILTTIFKKFSRVYGISMISYFAIMIISGIMGNMDVGKLGDYLPIKLFVTNYTNHLNDTDYISGKIGLYLLILLGILGVILKAIVRNKNGNKHQY
>NZ_CP046062.1|WP_146957340.1|885423_885891_+|LytTR-family-transcriptional-regulator
MEISINIDDKLKDVQVVISGSDIEQLADIAQYLKSKNTPSRQLAIKTADNIRVVDKEDIILVESYGNDLTFTLKNNHKITTRKTLKRFLEENQKSDFVQISKSEVMNLSYLSKMESAFSGNYYAFLTNQSRVTVSRRFIKGILKRLEGSAEDEAF
>NZ_CP046062.1|WP_146957342.1|885877_886273_+|DUF3021-family-protein
MKHFKEAIVYLFIGIGVGSFISLLSFTLNHSTPSMRQFGLLMTMSAIMGLLSLIYEYDKITFMTQLMSHFILEMLTYGVFIWLTFESAVITFSNIPTFVITYVIIFLYFRKQGRDNARRINEQLQKKAGKK
>NZ_CP046062.1|WP_146957345.1|886419_888510_+|DNA-topoisomerase-III
MPNYLILTEKPSAATNFTKALGGKTGNFGDFTYKITHLRGHVMTLKNPEEMVAEDLKKQYKSWLVKHLPWHLEDFSWARTYIRQRNMRTGKIESTKKLIDELKKESKSGYDAIIIATDTDPSGEGELLAWEALDAIDWRGQVLRANFMDESVSGIQKAMRQLRNVSDKMADGEYVKGESRNRWDFVSMQLTRIATTAAKKAGFKVVAREGRLKSVIVWRIYQQLEAIKNYVKTPYFEVKFKDPAGHIFGRVTPQEEVIPWRFAKKEQAQVDFNNYHETEVINEKHQTRTQAPGKLLDLAGLASILAPRGFSAKEVLSTYQKMYEAQIVSYPRTEDKTVTPEQFNELLPLIDQIADVVGVDKNLLTQRSPRKTHVKSQGAHGANRPGENVPQNTQALVKFGSSGPAIYEVLAKNYLAMLAEDYVYDHVTANLKDYPEFKTVFNIPINLNFKLVYDSQKAIKIEENEEETSTSSQLGPQAMPYLYEGANPKPQAPTTKWIMAFLERHHVGTGATRVSTLSEMSRGTKAMLTEKRGKLGLTETGNVSAIMVKDTWIASPKITKRLFEMMDQVGRFEMTMVQLLDSATKVVEHDMPIMLENAQTLETLLGEPKPSKKKPRKISEKITGIWQGKEITFAREWSGHTFTDEELQKLLAGSEISFPAKSKSGKAYTAVGKMAKQTFKGNPFYGFKLNPKTKKA
>NZ_CP046062.1|WP_146957347.1|888542_890369_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MIKSKKRLGFIGLTIAMFMGTLDSTIVNIALPKLMTTFNTNLAGVSWVATTYTLALAVFMITATKLGDKFGRKKIMITGLLLFTGASAACMFAPSLMYLLVFRSFQGLGGAIITPLVLPMGVELFGKQHMSKIAAIVGAITALAAAGGPAAGGFILEYMSWHWIFGLNVPIGLLSLLLVLFFTKDSFDETLVGHFDIAGMFFLTISLTGITFALLEGREYGWTSALILSSLLTGIIGLIVFILIELKVSSPIVELNLFREKTFTSSCIIYFATGFALVAPAVIFNYYLQNVLNYDALHAALMIIPVSLAIAITMPLATRLSDKVSAIPVNLIGMILIAGSLLLFSLITTTTPKMIMIVCSILIGSGFGFSTVSFVSSVRHLPKSKTGIGSGITNASRQIGTCLGMAVLVTVLNANISTAKSHIQHHSVAIINRKNLSPNVKKTAKSGIKQIFSSNDQKNINYTSQQKHFTKQLKQAALNKSNLPQPKKDTNYRKLYDATLKISEANQRINDSLYKLVSATTTNQVLNSQIMSLSDGNLTLLHAQKRIPEAIKLLAQRDELKRTLSEIKKEKNTSLSHAFSKTYVICALLLLVCSPIALLSDKHQKKTH
>NZ_CP046062.1|WP_146957349.1|890559_891108_+|TetR-family-transcriptional-regulator
MNNRMSLQTREWVRSALLALLDEVEDIKLITISDISQRSGISRRTFYRYYAAKEDVLTEYIDILIEQYGNDLRSKELANFKEFIAYFFNYWGQYDHELFILQKNGLFTYVLSEFNKMIPELYATISAPWHIQKEVNSREVIYTTRYGVGGLWNVYGEWLEFDREKIEITEVANILIQSFDSL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046062_1	1.4\|150029\|30\|NZ_CP046062\|CRT	150029-150058	30	NZ_AP015032	Pseudomonas putida strain KF715 plasmid pKF715C, complete sequence	86244-86273	6	0.8
NZ_CP046062_1	1.5\|150077\|30\|NZ_CP046062\|CRT	150077-150106	30	NZ_AP015032	Pseudomonas putida strain KF715 plasmid pKF715C, complete sequence	86244-86273	6	0.8
NZ_CP046062_1	1.4\|150029\|30\|NZ_CP046062\|CRT	150029-150058	30	NZ_CP054029	Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence	60571-60600	7	0.767
NZ_CP046062_1	1.5\|150077\|30\|NZ_CP046062\|CRT	150077-150106	30	NZ_CP054029	Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence	60571-60600	7	0.767
NZ_CP046062_1	1.18\|150857\|30\|NZ_CP046062\|CRT	150857-150886	30	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	23665-23694	7	0.767
NZ_CP046062_1	1.18\|150857\|30\|NZ_CP046062\|CRT	150857-150886	30	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	491387-491416	7	0.767
NZ_CP046062_1	1.21\|151001\|30\|NZ_CP046062\|CRT	151001-151030	30	MH593834	Siphoviridae sp. isolate ctbe1, complete genome	58604-58633	7	0.767
NZ_CP046062_1	1.22\|151049\|30\|NZ_CP046062\|CRT	151049-151078	30	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	234272-234301	7	0.767
NZ_CP046062_1	1.22\|151049\|30\|NZ_CP046062\|CRT	151049-151078	30	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	415389-415418	7	0.767
NZ_CP046062_1	1.22\|151049\|30\|NZ_CP046062\|CRT	151049-151078	30	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1897786-1897815	7	0.767
NZ_CP046062_1	1.2\|149912\|30\|NZ_CP046062\|CRT	149912-149941	30	MH593834	Siphoviridae sp. isolate ctbe1, complete genome	58604-58633	8	0.733
NZ_CP046062_1	1.7\|150185\|30\|NZ_CP046062\|CRT	150185-150214	30	KM363596	Mycobacteriophage Omnicron, complete genome	35396-35425	8	0.733
NZ_CP046062_1	1.18\|150857\|30\|NZ_CP046062\|CRT	150857-150886	30	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	784569-784598	8	0.733
NZ_CP046062_1	1.22\|151049\|30\|NZ_CP046062\|CRT	151049-151078	30	NZ_CP017941	Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence	48268-48297	8	0.733
NZ_CP046062_1	1.23\|151097\|30\|NZ_CP046062\|CRT	151097-151126	30	NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	354237-354266	8	0.733
NZ_CP046062_1	1.18\|150857\|30\|NZ_CP046062\|CRT	150857-150886	30	NZ_CP054033	Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence	492643-492672	9	0.7

1. spacer 1.4|150029|30|NZ_CP046062|CRT matches to NZ_AP015032 (Pseudomonas putida strain KF715 plasmid pKF715C, complete sequence) position: , mismatch: 6, identity: 0.8

cgtgctttcgggggcgctttctggcgcgct	CRISPR spacer
cgaactttcgcgggcgctttctggtgcacg	Protospacer
** .****** *************.**.*

2. spacer 1.5|150077|30|NZ_CP046062|CRT matches to NZ_AP015032 (Pseudomonas putida strain KF715 plasmid pKF715C, complete sequence) position: , mismatch: 6, identity: 0.8

cgtgctttcgggggcgctttctggcgcgct	CRISPR spacer
cgaactttcgcgggcgctttctggtgcacg	Protospacer
** .****** *************.**.*

3. spacer 1.4|150029|30|NZ_CP046062|CRT matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 7, identity: 0.767

cgtgctttcgggggcgctttctggcgcgct	CRISPR spacer
cgtgctttcgggggcgcttgccggcctttc	Protospacer
******************* *.*** . ..

4. spacer 1.5|150077|30|NZ_CP046062|CRT matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 7, identity: 0.767

cgtgctttcgggggcgctttctggcgcgct	CRISPR spacer
cgtgctttcgggggcgcttgccggcctttc	Protospacer
******************* *.*** . ..

5. spacer 1.18|150857|30|NZ_CP046062|CRT matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 7, identity: 0.767

cgtactctcgggcgtgctttcgggcgtgct	CRISPR spacer
cccggtgtcgggcctgctgtcgggcgtgct	Protospacer
* .. * ****** **** ***********

6. spacer 1.18|150857|30|NZ_CP046062|CRT matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 7, identity: 0.767

cgtactctcgggcgtgctttcgggcgtgct	CRISPR spacer
cccggtgtcgggcctgctgtcgggcgtgct	Protospacer
* .. * ****** **** ***********

7. spacer 1.21|151001|30|NZ_CP046062|CRT matches to MH593834 (Siphoviridae sp. isolate ctbe1, complete genome) position: , mismatch: 7, identity: 0.767

cgtgctctctggtgcactctcgggggcgct	CRISPR spacer
ggtcaggtctggttcgctctcgggggcgct	Protospacer
 **    ****** *.**************

8. spacer 1.22|151049|30|NZ_CP046062|CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.767

ggcactttcgggcgtgctctcaggcgcgct	CRISPR spacer
gttcatctggggcgtgctctcaggcgccct	Protospacer
* .  *.* ****************** **

9. spacer 1.22|151049|30|NZ_CP046062|CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 7, identity: 0.767

ggcactttcgggcgtgctctcaggcgcgct	CRISPR spacer
gttcatctggggcgtgctctcaggcgccct	Protospacer
* .  *.* ****************** **

10. spacer 1.22|151049|30|NZ_CP046062|CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.767

ggcactttcgggcgtgctctcaggcgcgct	CRISPR spacer
gttcatctggggcgtgctctcaggcgccct	Protospacer
* .  *.* ****************** **

11. spacer 1.2|149912|30|NZ_CP046062|CRT matches to MH593834 (Siphoviridae sp. isolate ctbe1, complete genome) position: , mismatch: 8, identity: 0.733

tgcactctctggtccgctttcgggggcgct	CRISPR spacer
ggtcaggtctggttcgctctcgggggcgct	Protospacer
 *.    ******.****.***********

12. spacer 1.7|150185|30|NZ_CP046062|CRT matches to KM363596 (Mycobacteriophage Omnicron, complete genome) position: , mismatch: 8, identity: 0.733

cgcgctttccggcgtactctctggcgcgct	CRISPR spacer
gaacccgttcggcgtactctttggcgcgct	Protospacer
 .  *. *.***********.*********

13. spacer 1.18|150857|30|NZ_CP046062|CRT matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cgtactctcgggcgtgctttcgggcgtgct	CRISPR spacer
gccgatttcggccgtgctttcgggcctgct	Protospacer
  .. *.**** ************* ****

14. spacer 1.22|151049|30|NZ_CP046062|CRT matches to NZ_CP017941 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ggcactttcgggcgtgctctcaggcgcgct	CRISPR spacer
cttcgtttggggcgtgctctcaggcgcctt	Protospacer
  .  *** ****************** .*

15. spacer 1.23|151097|30|NZ_CP046062|CRT matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 8, identity: 0.733

ggcactttcgggcgtgctctccggcgcact	CRISPR spacer
cattttttcgcgcgtgctctccggcgctcg	Protospacer
 .. .***** **************** *

16. spacer 1.18|150857|30|NZ_CP046062|CRT matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 9, identity: 0.7

cgtactctcgggcgtgctttcgggcgtgct	CRISPR spacer
ttctgcctcgggcgtgcttgccggcgtgca	Protospacer
. .  .************* * *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

306828 : 317586

Pandoravirus(14.29%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146956364.1\|306828_307938_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0B5JD48	Pandoravirus	9.2e-13	27.3
WP_146956365.1\|307934_308852_-	homoserine O-succinyltransferase	NA	NA	NA	NA
WP_146956366.1\|309350_309677_+	thioredoxin family protein	NA	NA	NA	NA
WP_146956367.1\|309769_310627_-\|protease	trypsin-like serine protease	W5SAB9	Pithovirus	6.7e-11	31.5
WP_146956368.1\|310719_312018_-	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	3.4e-14	29.8
WP_146956369.1\|312001_312700_-	response regulator	W8CYM9	Bacillus_phage	6.8e-30	35.0
WP_146956370.1\|312780_313146_-	type II toxin-antitoxin system PemK/MazF family toxin	A0A2P0ZKX3	Lactobacillus_phage	7.2e-07	37.7
WP_146956371.1\|313184_314306_-	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	1.2e-28	29.6
WP_146956372.1\|314302_314713_-	holo-ACP synthase	NA	NA	NA	NA
WP_146956373.1\|314783_316070_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA
WP_146956374.1\|316074_316311_-	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA
WP_146956375.1\|316377_317586_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	A0A125RNP0	Pseudomonas_phage	7.2e-19	26.6

DBSCAN-SWA_2

741736 : 750203

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146957052.1\|741736_743464_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	4.3e-57	44.8
WP_146957054.1\|743518_744124_+	recombination protein RecR	NA	NA	NA	NA
WP_146957057.1\|744120_744381_+	DUF2508 family protein	NA	NA	NA	NA
WP_146957059.1\|744411_745053_+	dTMP kinase	M1PSC7	Streptococcus_phage	3.0e-48	46.0
WP_146957061.1\|745049_745379_+	hypothetical protein	NA	NA	NA	NA
WP_146957063.1\|745378_746281_+	DNA polymerase III subunit delta	M1NSC1	Streptococcus_phage	2.6e-13	28.5
WP_146957066.1\|746282_747152_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.0e-75	53.3
WP_146957068.1\|747153_747885_+	acyl-ACP thioesterase	NA	NA	NA	NA
WP_146957070.1\|747912_748905_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	3.8e-50	35.4
WP_146957072.1\|749237_750203_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	4.4e-11	26.3

DBSCAN-SWA_3

783256 : 841529

Lactococcus_phage(20.0%)

holin,tRNA,integrase,head,capsid,portal,terminase,tail,protease

attL 825367:825385|attR 839925:839943

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146957141.1\|783256_785941_+\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	2.1e-156	41.1
WP_146957143.1\|786119_787088_+	beta-ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_146957146.1\|787406_788708_+	LysM peptidoglycan-binding domain-containing protein	A0A0A7NU10	Lactobacillus_phage	5.4e-12	42.9
WP_146957148.1\|788667_789063_+	NlpC/P60 family protein	NA	NA	NA	NA
WP_146957150.1\|789254_790358_+	LysM peptidoglycan-binding domain-containing protein	K4ID66	Lactobacillus_phage	1.9e-05	46.5
WP_146957153.1\|790433_791687_+	peptidoglycan bridge formation glycyltransferase FemA/FemB family protein	NA	NA	NA	NA
WP_146957156.1\|791765_793808_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_146957158.1\|793927_794194_+	autorepressor SdpR family transcription factor	NA	NA	NA	NA
WP_146957160.1\|794183_794819_+	DUF1648 domain-containing protein	NA	NA	NA	NA
WP_146957162.1\|795020_797009_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.6e-31	41.5
WP_146957165.1\|797195_798356_+	LytR family transcriptional regulator	NA	NA	NA	NA
WP_146957167.1\|798401_798803_-	DUF454 family protein	NA	NA	NA	NA
WP_146957169.1\|798861_799785_+	exopolyphosphatase	NA	NA	NA	NA
WP_146957172.1\|799777_800983_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
WP_146957174.1\|800966_801917_+	nitrate ABC transporter ATPase	NA	NA	NA	NA
WP_146957177.1\|801958_802663_+	NAD-dependent protein deacylase	NA	NA	NA	NA
WP_146957179.1\|802762_803680_+	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_146957181.1\|804055_805450_+	Mn(2+) uptake NRAMP transporter MntH	NA	NA	NA	NA
WP_146957183.1\|805490_805958_+	universal stress protein	NA	NA	NA	NA
WP_146957185.1\|806044_806359_+	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_146957188.1\|806836_807784_+	ribonucleoside hydrolase RihC	NA	NA	NA	NA
WP_146957191.1\|807860_808580_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_146957193.1\|808598_809360_+	AAA family ATPase	A0A0K2FLP4	Brevibacillus_phage	4.4e-22	32.5
WP_146957195.1\|809349_810249_+	ParB/RepB/Spo0J family partition protein	S5VSZ7	Leptospira_phage	2.7e-15	30.8
WP_146957197.1\|810248_810458_+	DUF951 family protein	NA	NA	NA	NA
WP_146957199.1\|810459_811560_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_146957201.1\|811604_812303_+	DUF1129 family protein	NA	NA	NA	NA
WP_004164761.1\|812340_813033_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.8e-38	38.0
WP_146957203.1\|813029_814115_+	GHKL domain-containing protein	W8CYF6	Bacillus_phage	6.0e-25	25.1
WP_146957205.1\|814122_815457_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	4.2e-12	29.5
WP_146957207.1\|815591_816293_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_146957210.1\|816340_817693_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_011679222.1\|817812_818427_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_146957212.1\|818641_819835_+\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.4e-29	37.1
WP_146957214.1\|819821_821543_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_146957216.1\|821580_822060_-	substrate-binding protein	NA	NA	NA	NA
WP_146957218.1\|822074_823295_-	ABC transporter permease	NA	NA	NA	NA
WP_146957220.1\|823287_824181_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	2.8e-20	29.3
WP_146957222.1\|824193_824661_-	hypothetical protein	NA	NA	NA	NA
WP_146957223.1\|824660_824861_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_146957225.1\|825001_825217_+	hypothetical protein	NA	NA	NA	NA
825367:825385	attL	NA	NA	NA	NA
WP_146957227.1\|825647_826022_+	hypothetical protein	NA	NA	NA	NA
WP_096638753.1\|826271_826463_+	hypothetical protein	NA	NA	NA	NA
WP_146957229.1\|826470_827043_+	hypothetical protein	NA	NA	NA	NA
WP_146957231.1\|827183_827474_-	hypothetical protein	NA	NA	NA	NA
WP_146957233.1\|827470_828073_-	helix-turn-helix domain-containing protein	L0P7E1	Lactobacillus_phage	8.0e-11	50.7
WP_146957235.1\|828210_828411_+	hypothetical protein	NA	NA	NA	NA
WP_146957238.1\|828656_830036_+	hypothetical protein	A0A0S2MU07	Streptomyces_phage	5.7e-12	38.0
WP_146957240.1\|830315_830507_+	hypothetical protein	NA	NA	NA	NA
WP_146957242.1\|830529_830877_+	hypothetical protein	NA	NA	NA	NA
WP_146957244.1\|830878_831289_+	DUF722 domain-containing protein	A0A097BYG4	Leuconostoc_phage	3.1e-14	35.5
WP_146957247.1\|831365_831866_+	HNH endonuclease	Q9AZM8	Lactococcus_phage	7.7e-52	57.2
WP_146957249.1\|832231_832708_+\|terminase	phage terminase small subunit P27 family	Q5K5J8	Oenococcus_phage	2.3e-13	40.2
WP_146957252.1\|832704_834540_+\|terminase	terminase large subunit	Q9AZM6	Lactococcus_phage	5.3e-207	59.0
WP_146957254.1\|834725_835799_+\|portal	phage portal protein	Q9AZM4	Lactococcus_phage	1.3e-107	56.6
WP_146957257.1\|835795_836356_+\|head,protease	HK97 family phage prohead protease	Q9AZM3	Lactococcus_phage	2.2e-47	53.8
WP_146957259.1\|836366_837527_+\|capsid	phage major capsid protein	A0A2H4JFE3	uncultured_Caudovirales_phage	1.9e-45	39.8
WP_146957261.1\|837582_837882_+\|head,tail	phage gp6-like head-tail connector protein	A0A2P0ZLF2	Lactobacillus_phage	1.4e-08	42.4
WP_146957263.1\|837874_838237_+\|head	phage head closure protein	Q9AZM0	Lactococcus_phage	2.2e-16	41.7
WP_146957265.1\|838245_838443_+	hypothetical protein	NA	NA	NA	NA
WP_002815641.1\|838442_838631_+	hypothetical protein	A0A097BYD9	Leuconostoc_phage	4.1e-22	77.6
WP_146957267.1\|838739_839867_+\|integrase	tyrosine-type recombinase/integrase	A0A097BYJ7	Leuconostoc_phage	2.2e-155	69.5
WP_146957270.1\|840308_841529_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.1e-78	42.4
839925:839943	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1061433 : 1074587

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146957667.1\|1061433_1062699_+	insulinase family protein	A0A1X9I714	Streptococcus_phage	3.6e-45	29.1
WP_146957669.1\|1062700_1063972_+	insulinase family protein	A0A167R9K4	Powai_lake_megavirus	1.7e-18	31.8
WP_146957671.1\|1063986_1064862_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_146957673.1\|1064872_1065454_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_146957675.1\|1065593_1066751_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.5e-117	65.1
WP_146957677.1\|1066833_1067526_+	response regulator	W8CYM9	Bacillus_phage	2.8e-36	35.1
WP_146957679.1\|1067760_1068669_+	phosphate ABC transporter substrate-binding protein PstS family protein	M1U9L0	Synechococcus_phage	3.5e-10	27.8
WP_146957681.1\|1068748_1070089_+	histidine kinase	W8CYF6	Bacillus_phage	3.8e-29	35.2
WP_146957683.1\|1070228_1071110_+	phosphate ABC transporter substrate-binding protein PstS family protein	H6WG65	Cyanophage	7.6e-10	27.4
WP_146957685.1\|1071162_1072086_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_146957687.1\|1072085_1072970_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_146957690.1\|1072977_1073820_+	phosphate ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.7e-11	32.4
WP_146957692.1\|1073816_1074587_+	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-16	29.8

DBSCAN-SWA_5

1208915 : 1217604

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146957969.1\|1208915_1209401_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.2e-22	46.2
WP_146957971.1\|1209397_1210507_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_146957973.1\|1210490_1211240_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	2.0e-35	34.1
WP_146957975.1\|1211241_1211511_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_146957977.1\|1211507_1212176_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_146957979.1\|1212180_1214397_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	7.2e-142	38.7
WP_146957981.1\|1214375_1215986_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.5e-45	31.0
WP_146957983.1\|1215982_1217020_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F0L1	Synechococcus_phage	2.7e-59	40.2
WP_146957985.1\|1217013_1217604_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	3.1e-23	37.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046062

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection