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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP045695 [Clostridium] scindens strain BL389WT3D chromosome, complete genome 4 crisprs cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL,csa3,DEDDh,c2c9_V-U4,DinG 0 10 12 0

Results visualization

1. NZ_CP045695
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045695_1 356123-356895 TypeI NA
11 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045695_2 358549-359933 TypeI NA
20 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045695_3 2101174-2101287 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045695_4 2818108-2820364 Orphan NA
33 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP045695_4 4.22|2819557|31|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR 2819557-2819587 31 FJ839693 Enterobacteria phage RB51, complete genome 23420-23450 7 0.774
NZ_CP045695_4 4.22|2819557|31|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR 2819557-2819587 31 KM607004 Enterobacteria phage RB68, complete genome 23420-23450 7 0.774
NZ_CP045695_4 4.22|2819557|31|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR 2819557-2819587 31 MN895434 Escherichia phage teqhad, complete genome 28464-28494 7 0.774
NZ_CP045695_4 4.22|2819557|31|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR 2819557-2819587 31 NZ_CP017105 Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence 2005726-2005756 7 0.774
NZ_CP045695_1 1.6|356494|34|NZ_CP045695|PILER-CR,CRISPRCasFinder,CRT 356494-356527 34 NZ_CP018921 Serratia marcescens strain UMH7 plasmid unnamed4, complete sequence 4959-4992 8 0.765
NZ_CP045695_4 4.3|2818278|35|NZ_CP045695|CRISPRCasFinder,CRT 2818278-2818312 35 MT843275 Serratia phage vB_SspM_BZS1, complete genome 34468-34502 8 0.771
NZ_CP045695_4 4.12|2818883|36|NZ_CP045695|CRISPRCasFinder,CRT 2818883-2818918 36 NZ_CP031079 Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence 15034-15069 9 0.75
NZ_CP045695_4 4.22|2819557|31|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR 2819557-2819587 31 MN694505 Marine virus AFVG_250M549, complete genome 7900-7930 9 0.71
NZ_CP045695_4 4.33|2820298|34|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR 2820298-2820331 34 NC_011879 Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence 408274-408307 9 0.735
NZ_CP045695_1 1.2|356223|34|NZ_CP045695|PILER-CR,CRISPRCasFinder,CRT 356223-356256 34 NZ_CP022999 Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence 654839-654872 10 0.706
NZ_CP045695_2 2.9|359121|34|NZ_CP045695|PILER-CR,CRISPRCasFinder,CRT 359121-359154 34 NC_025829 Shigella phage pSs-1, complete genome 104205-104238 10 0.706
NZ_CP045695_2 2.13|359389|34|NZ_CP045695|PILER-CR,CRISPRCasFinder,CRT 359389-359422 34 NZ_CP043858 Arcobacter cibarius strain H743 plasmid pACIB, complete sequence 48729-48762 10 0.706
NZ_CP045695_2 2.19|359798|34|NZ_CP045695|PILER-CR,CRISPRCasFinder,CRT 359798-359831 34 LN885237 Lactobacillus phage EV3 genome assembly, complete genome: monopartite 7979-8012 10 0.706
NZ_CP045695_4 4.12|2818883|36|NZ_CP045695|CRISPRCasFinder,CRT 2818883-2818918 36 NZ_CP044079 Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence 256429-256464 10 0.722
NZ_CP045695_4 4.16|2819154|34|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR 2819154-2819187 34 NZ_CP016618 Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence 658902-658935 10 0.706
NZ_CP045695_4 4.16|2819154|34|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR 2819154-2819187 34 KX455876 Aeromonas phage Ahp2, complete genome 43610-43643 10 0.706
NZ_CP045695_4 4.22|2819557|31|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR 2819557-2819587 31 NZ_CP032091 Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence 487952-487982 10 0.677

1. spacer 4.22|2819557|31|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR matches to FJ839693 (Enterobacteria phage RB51, complete genome) position: , mismatch: 7, identity: 0.774

ttgacctgcatccatatcggcaataacctct	CRISPR spacer
ttgacctgcatacatatcggtaattgcttta	Protospacer
*********** ********.*** .*.*. 

2. spacer 4.22|2819557|31|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR matches to KM607004 (Enterobacteria phage RB68, complete genome) position: , mismatch: 7, identity: 0.774

ttgacctgcatccatatcggcaataacctct	CRISPR spacer
ttgacctgcatacatatcggtaattgcttta	Protospacer
*********** ********.*** .*.*. 

3. spacer 4.22|2819557|31|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR matches to MN895434 (Escherichia phage teqhad, complete genome) position: , mismatch: 7, identity: 0.774

ttgacctgcatccatatcggcaataacctct	CRISPR spacer
ttgacctgcatacatatcggtaattgcttta	Protospacer
*********** ********.*** .*.*. 

4. spacer 4.22|2819557|31|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 7, identity: 0.774

ttgacctgcatccatatcggcaataacctct	CRISPR spacer
ctgacctgcatctacatcggcaatcccgtgt	Protospacer
.***********.*.*********  * * *

5. spacer 1.6|356494|34|NZ_CP045695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018921 (Serratia marcescens strain UMH7 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.765

gaaatgattaagttggatgacggcacatatgtgc	CRISPR spacer
gaagtgtttaagttggatgacggcaagttagagg	Protospacer
***.** ****************** .*  * * 

6. spacer 4.3|2818278|35|NZ_CP045695|CRISPRCasFinder,CRT matches to MT843275 (Serratia phage vB_SspM_BZS1, complete genome) position: , mismatch: 8, identity: 0.771

aagttttcggaatggctggaagaatgcaatgaaga	CRISPR spacer
cagctgcaggaatcgctggaacaatgcaatgaaca	Protospacer
 **.* . ***** ******* *********** *

7. spacer 4.12|2818883|36|NZ_CP045695|CRISPRCasFinder,CRT matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 9, identity: 0.75

gattggagggcgagcagcaggaacgggatcagagaa	CRISPR spacer
gcgtagcccgcgaccagcaggaacgggatcagcgac	Protospacer
*  *.*   **** ****************** ** 

8. spacer 4.22|2819557|31|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR matches to MN694505 (Marine virus AFVG_250M549, complete genome) position: , mismatch: 9, identity: 0.71

ttgacctgcatccatatcggcaataacctct	CRISPR spacer
tgtacctgcatccatatctccaataatagaa	Protospacer
*  ***************  ******.    

9. spacer 4.33|2820298|34|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR matches to NC_011879 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence) position: , mismatch: 9, identity: 0.735

gaacagcagcagcgaaaccggtggcccaaacgat	CRISPR spacer
gacggccagcaccgaaaccggtggctcaaaagcc	Protospacer
**  . ***** *************.**** * .

10. spacer 1.2|356223|34|NZ_CP045695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 10, identity: 0.706

ataaaactattctcatcgcttccgctgatcgcct	CRISPR spacer
gcgcactcattctcatcccttccgcagatcgcat	Protospacer
... * ..********* ******* ****** *

11. spacer 2.9|359121|34|NZ_CP045695|PILER-CR,CRISPRCasFinder,CRT matches to NC_025829 (Shigella phage pSs-1, complete genome) position: , mismatch: 10, identity: 0.706

cttgtcctctttcacgcatctttcaagaagatac	CRISPR spacer
gtgttcctctttcacgcatccctcaagaccaaca	Protospacer
 *  ****************..******  *   

12. spacer 2.13|359389|34|NZ_CP045695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043858 (Arcobacter cibarius strain H743 plasmid pACIB, complete sequence) position: , mismatch: 10, identity: 0.706

gttttcaaatagtttctgtgccatttcggccgtt	CRISPR spacer
aatttcaaatagtatttgtgccatttgaacatat	Protospacer
. *********** *.********** ..*   *

13. spacer 2.19|359798|34|NZ_CP045695|PILER-CR,CRISPRCasFinder,CRT matches to LN885237 (Lactobacillus phage EV3 genome assembly, complete genome: monopartite) position: , mismatch: 10, identity: 0.706

caaggaggaaattatttatggcacagacacagaa----	CRISPR spacer
aaaagaggaaataatttatggcacaa----ggtacttc	Protospacer
 **.******** ************.    .* *    

14. spacer 4.12|2818883|36|NZ_CP045695|CRISPRCasFinder,CRT matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722

gattggagggcgagcagcaggaacgggatcagagaa	CRISPR spacer
gcgtaccccgcgaccagcaggaacgggatcagcgac	Protospacer
*  *.    **** ****************** ** 

15. spacer 4.16|2819154|34|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016618 (Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

aatagcaggaaggaggcggagaccccggccggga	CRISPR spacer
tgcgccgagaaggaggcggcgaccccggccaggc	Protospacer
 ... *..*********** **********.** 

16. spacer 4.16|2819154|34|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR matches to KX455876 (Aeromonas phage Ahp2, complete genome) position: , mismatch: 10, identity: 0.706

aatagcaggaaggaggcggagaccccggccggga	CRISPR spacer
atgttcagcaaggagccggagaccccggcaacgc	Protospacer
*    *** ****** ************* . * 

17. spacer 4.22|2819557|31|NZ_CP045695|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.677

ttgacctgcatccatatcggcaataacctct	CRISPR spacer
gaaaccagcatcgatatcggcaataattggc	Protospacer
  .*** ***** *************..  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 419271 : 482939 57 Planktothrix_phage(18.18%) transposase,integrase attL 426992:427008|attR 483604:483620
DBSCAN-SWA_2 637041 : 648727 14 Streptococcus_phage(72.73%) NA NA
DBSCAN-SWA_3 1040626 : 1101608 60 Staphylococcus_phage(20.0%) transposase,coat NA
DBSCAN-SWA_4 1433476 : 1444125 8 Erysipelothrix_phage(66.67%) tail,integrase attL 1426417:1426431|attR 1440096:1440110
DBSCAN-SWA_5 1448620 : 1459611 11 Streptococcus_phage(62.5%) NA NA
DBSCAN-SWA_6 1508722 : 1541251 33 Bacillus_phage(55.56%) transposase,terminase NA
DBSCAN-SWA_7 1747942 : 1814055 58 Wolbachia_phage(18.18%) transposase NA
DBSCAN-SWA_8 2472600 : 2521139 34 unidentified_phage(16.67%) transposase NA
DBSCAN-SWA_9 2793034 : 2850430 56 Enterobacteria_phage(21.43%) transposase NA
DBSCAN-SWA_10 3339459 : 3394022 55 Enterobacteria_phage(17.65%) transposase,integrase attL 3354121:3354141|attR 3382025:3382045
DBSCAN-SWA_11 3465340 : 3495127 26 Enterobacteria_phage(28.57%) tRNA,transposase,integrase attL 3489747:3489806|attR 3498516:3499848
DBSCAN-SWA_12 3561254 : 3571349 13 Bacillus_phage(37.5%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage