CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016604	Otariodibacter oris strain Baika1, complete genome	1 crisprs	DEDDh,cas3,cas2,cas1,cas9	0	4	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016604_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016604_1

1794662-1795291

orTypeII

Consensus_repeat	Method
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	CRISPRCasFinder
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	CRT
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	PILER-CR

9 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP016604_1

>merge|NZ_CP016604|1|1794662-1795291|CRISPRCasFinder,CRT,PILER-CR
CAATCTCTACTGGTTCTCATTTCGCTGTGCTACAATATTACAAATAAAAATTCTAAAACGTGTTTGGTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAATTTCCAATAACGATTGCGTAACCATTCATCCGTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAATCTCGACCCTCTTGACGGGGTCAAATACGCTGTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAATTTGTCTCCGTTGAGTTAAACGATCTATCGCGTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAATCAAGAGTTTTTACAGTCAAAGAATATCAGGGTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAATTTTGCTTGTAATCCTAAGATTTTGTTGCTTGTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAATGTTTTTTGTCCTTTATAGTTAAACCAAGCCGTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAATTGATTTTGTAAGCCAGCTAAACATAGCTCTGTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAATAACTCTATCGGTCAATACGTAGGAATAGAAGTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT

>NZ_CP016604|1|1|1794662-1795291|CRISPRCasFinder
CAATCTCTACTGGTTCTCATTTCGCTGTGCTACAAT	ATTACAAATAAAAATTCTAAAACGTGTTTG
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	TTCCAATAACGATTGCGTAACCATTCATCC
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	CTCGACCCTCTTGACGGGGTCAAATACGCT
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	TTGTCTCCGTTGAGTTAAACGATCTATCGC
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	CAAGAGTTTTTACAGTCAAAGAATATCAGG
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	TTTGCTTGTAATCCTAAGATTTTGTTGCTT
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	GTTTTTTGTCCTTTATAGTTAAACCAAGCC
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	TGATTTTGTAAGCCAGCTAAACATAGCTCT
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	AACTCTATCGGTCAATACGTAGGAATAGAA
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT

>NZ_CP016604|1|1|1794662-1795291|CRT
CAATCTCTACTGGTTCTCATTTCGCTGTGCTACAAT	ATTACAAATAAAAATTCTAAAACGTGTTTG
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	TTCCAATAACGATTGCGTAACCATTCATCC
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	CTCGACCCTCTTGACGGGGTCAAATACGCT
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	TTGTCTCCGTTGAGTTAAACGATCTATCGC
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	CAAGAGTTTTTACAGTCAAAGAATATCAGG
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	TTTGCTTGTAATCCTAAGATTTTGTTGCTT
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	GTTTTTTGTCCTTTATAGTTAAACCAAGCC
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	TGATTTTGTAAGCCAGCTAAACATAGCTCT
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	AACTCTATCGGTCAATACGTAGGAATAGAA
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT

>NZ_CP016604|1|1|1794728-1795291|PILER-CR
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	TTCCAATAACGATTGCGTAACCATTCATCC
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	CTCGACCCTCTTGACGGGGTCAAATACGCT
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	TTGTCTCCGTTGAGTTAAACGATCTATCGC
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	CAAGAGTTTTTACAGTCAAAGAATATCAGG
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	TTTGCTTGTAATCCTAAGATTTTGTTGCTT
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	GTTTTTTGTCCTTTATAGTTAAACCAAGCC
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	TGATTTTGTAAGCCAGCTAAACATAGCTCT
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT	AACTCTATCGGTCAATACGTAGGAATAGAA
GTTGTAGCTCCCGTTCTCATTTCGCTGTGCTACAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016604.1\|WP_121124119.1\|1786791_1787115_+\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|225380
NZ_CP016604.1\|WP_121124115.1\|1788534_1789740_+\|NgoFVII-family-restriction-endonuclease	unknown	unknown	gnl\|CDD\|197216
NZ_CP016604.1\|WP_121124117.1\|1787413_1788538_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP016604.1\|WP_121124111.1\|1793346_1793766_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP016604.1\|WP_121124094.1\|1803413_1804349_-\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|272922
NZ_CP016604.1\|WP_121124101.1\|1800283_1801108_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_CP016604.1\|WP_121124107.1\|1795540_1795867_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP016604.1\|WP_121124090.1\|1805114_1806098_-\|octaprenyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|182813
NZ_CP016604.1\|WP_121124121.1\|1785631_1786579_-\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273465
NZ_CP016604.1\|WP_121124123.1\|1785197_1785548_+\|fumarate-reductase-subunit-FrdD	unknown	unknown	gnl\|CDD\|180105
NZ_CP016604.1\|WP_121124105.1\|1795859_1796774_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP016604.1\|WP_121124099.1\|1801246_1802539_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|224039
NZ_CP016604.1\|WP_121124113.1\|1789798_1793008_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP016604.1\|WP_121124127.1\|1784004_1784775_+\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|183490
NZ_CP016604.1\|WP_121124097.1\|1802654_1803383_-\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|235500
NZ_CP016604.1\|WP_121124088.1\|1806244_1807519_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|236933
NZ_CP016604.1\|WP_121124125.1\|1784787_1785189_+\|fumarate-reductase-subunit-FrdC	unknown	unknown	gnl\|CDD\|235327
NZ_CP016604.1\|WP_121124129.1\|1782205_1783990_+\|fumarate-reductase-(quinol)-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236421
NZ_CP016604.1\|WP_121124092.1\|1804401_1805106_-\|epoxyqueuosine-reductase-QueH	unknown	unknown	gnl\|CDD\|224551
NZ_CP016604.1\|WP_121124103.1\|1796834_1800011_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044

Protein	Function_ID	Function_description	E-value
NZ_CP016604.1\|WP_121124119.1\|1786791_1787115_+\|alkylphosphonate-utilization-protein	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	1.87616e-52
NZ_CP016604.1\|WP_121124115.1\|1788534_1789740_+\|NgoFVII-family-restriction-endonuclease	gnl\|CDD\|197216	cd09117, PLDc_Bfil_DEXD_like, Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, and uncharacterized proteins with a DEAD domain. Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, uncharacterized type III restriction endonuclease Res subunit, and uncharacterized DNA/RNA helicase superfamily II members. Proteins in this family are found mainly in prokaryotes. They contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in a single polypeptide chain, and have been classified as members of the phospholipase D (PLD, EC 3.1.4.4) superfamily. BfiI consists of two discrete domains with distinct functions: an N-terminal catalytic domain with non-specific nuclease activity and dimerization function that is more closely related to Nuc, an EDTA-resistant nuclease from the phospholipase D (PLD) superfamily; and a C-terminal domain that specifically recognizes its target sequences, 5'-ACTGGG-3'. BfiI forms a functionally active homodimer which has two DNA-binding surfaces located at the C-terminal domains but only one active site, located at the dimer interface between the two N-terminal catalytic domains that contain the two HKD motifs from both subunits. BfiI utilizes a single active site to cut both DNA strands, which represents a novel mechanism for the scission of double-stranded DNA. It uses a histidine residue from the HKD motif in one subunit as the nucleophile for the cleavage of the target phosphodiester bond in both of the anti-parallel DNA strands, while the symmetrically-related histidine residue from the HKD motif of the opposite subunit acts as the proton donor/acceptor during both strand-scission events.	1.27577e-14
NZ_CP016604.1\|WP_121124117.1\|1787413_1788538_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP016604.1\|WP_121124111.1\|1793346_1793766_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	3.15804e-17
NZ_CP016604.1\|WP_121124094.1\|1803413_1804349_-\|ACP-S-malonyltransferase	gnl\|CDD\|272922	TIGR00128, Malonyl_CoA-acyl_carrier_protein_transacylase, malonyl CoA-acyl carrier protein transacylase. This enzyme of fatty acid biosynthesis transfers the malonyl moeity from coenzyme A to acyl-carrier protein. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension. [Fatty acid and phospholipid metabolism, Biosynthesis].	8.87382e-145
NZ_CP016604.1\|WP_121124101.1\|1800283_1801108_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	1.85791e-159
NZ_CP016604.1\|WP_121124107.1\|1795540_1795867_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.19103e-56
NZ_CP016604.1\|WP_121124090.1\|1805114_1806098_-\|octaprenyl-diphosphate-synthase	gnl\|CDD\|182813	PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional.	0
NZ_CP016604.1\|WP_121124121.1\|1785631_1786579_-\|cysteine-synthase-A	gnl\|CDD\|273465	TIGR01139, Cysteine_synthase, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. [Amino acid biosynthesis, Serine family].	6.66652e-173
NZ_CP016604.1\|WP_121124123.1\|1785197_1785548_+\|fumarate-reductase-subunit-FrdD	gnl\|CDD\|180105	PRK05470, PRK05470, fumarate reductase subunit FrdD.	1.23868e-46
NZ_CP016604.1\|WP_121124105.1\|1795859_1796774_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.55975e-135
NZ_CP016604.1\|WP_121124099.1\|1801246_1802539_-\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|224039	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism].	2.00106e-153
NZ_CP016604.1\|WP_121124113.1\|1789798_1793008_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP016604.1\|WP_121124127.1\|1784004_1784775_+\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	gnl\|CDD\|183490	PRK12385, PRK12385, succinate dehydrogenase/fumarate reductase iron-sulfur subunit.	0
NZ_CP016604.1\|WP_121124097.1\|1802654_1803383_-\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	1.54635e-134
NZ_CP016604.1\|WP_121124088.1\|1806244_1807519_-\|HlyC/CorC-family-transporter	gnl\|CDD\|236933	PRK11573, PRK11573, hypothetical protein; Provisional.	0
NZ_CP016604.1\|WP_121124125.1\|1784787_1785189_+\|fumarate-reductase-subunit-FrdC	gnl\|CDD\|235327	PRK04987, PRK04987, fumarate reductase subunit FrdC.	6.20325e-64
NZ_CP016604.1\|WP_121124129.1\|1782205_1783990_+\|fumarate-reductase-(quinol)-flavoprotein-subunit	gnl\|CDD\|236421	PRK09231, PRK09231, fumarate reductase flavoprotein subunit; Validated.	0
NZ_CP016604.1\|WP_121124092.1\|1804401_1805106_-\|epoxyqueuosine-reductase-QueH	gnl\|CDD\|224551	COG1636, COG1636, Uncharacterized protein conserved in bacteria [Function unknown].	1.87993e-127
NZ_CP016604.1\|WP_121124103.1\|1796834_1800011_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0

>NZ_CP016604.1|WP_121124111.1|1793346_1793766_+|DoxX-family-protein
MFNPNVIVKNIVTNPTLYALINVVARALLVYIFLVSGVGKFNGYELTAEHMEHLGIPAILLPPTILLEVGGGLAVLLGFQTRILALILGLFTLVSGFLVHGAPGQEIQLMKNFGITGGFLAIMLLGGGAWSIDRFLERK
>NZ_CP016604.1|WP_121124113.1|1789798_1793008_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKTILIIGAGPIVIGQACEFDYSGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIEWRTVTKIIEKERPDAILPTMGGQTALNCALDLSRHGVLKQYNVELIGATEDAIDKAEDRGRFKEAMAKIGLSCPKSFVAHSFEEALTAQKEVGFPTLIRPSFTMGGSGGGIAYNQDEFMAICERGFEASPTHELLIEQSVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVDTGGSNVQFAINPENGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLNELRNDITGGLIPASFEPTLDYVVTKIPRFAFEKFANADDRLTTQMKSVGEVMAMGRTFQESLQKALRGLETGICGFNLLSEEPEKIRRELANPGPNRILYVADAFGAGFSLEDVHYYSKIDPWFLIQIQDLVQEELNLEKKQFSDLDREELRRLKRKGFSDKRIAELTKVSEKTVRDYRHNLGILPVYKRVDTCAAEFASDTAYLYSTYEEECESNPSDRKKVMILGGGPNRIGQGIEFDYCCVHASLALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRVENPWGVIVHYGGQTPLKLANALHENGVNIIGTSADSIDAAEDRERFQRILNDLNLKQPANRTARNASEALELANEVGYPLVVRPSYVLGGRAMQIVYNDEELNTYMREAVSVSNDSPILLDHFLNNAIEVDVDCICDGKNVVIGGIMQHVEQAGIHSGDSACSLPAYSLSGQILDEIRRQTKEMALALKVKGLMNVQFAVQNDVIYVLEVNPRASRTVPFVSKATGQSLAKIAARVMAGETLAELNALEEIIPHKYFVKEAVFPFIKFPGVDTILGPEMRSTGEVMGIGETFAEAFYKAQLGAGERIPKVGKVFMSVVDQDKPTLLNIAKRFQEQGYGLCATWGSAKFLRENGIAVQTINKVREGRPHIVDAIKNNEIALVINTVSGDSEVIADSHSIRRTALQQRVPIYTTIASADAISTAVEHINEFDVYSIQQLHAELTN
>NZ_CP016604.1|WP_121124115.1|1788534_1789740_+|NgoFVII-family-restriction-endonuclease
MILEGLIMKFITKQSTLTAKFNSLVNKYKNISFATAWASSNHPAFETLLMNKTKIQSSTVGIHFYQTDPQVLIKFKSNKQVKISLQASGVFHPKVYLFWNDENDWAVLSGSANFTHGAFHGKNTENMMFINSEDVEDNKLFNEVSNFLDQCFKSAKEISKEYIKRYEELYSVKRKSINKLTDFQSKSILKNPVLDNEILTCSWAEYFQEVKKDPYHNFKSRLKMLELFQYLFKSHETFSMINEDNRKFICGLKCSDERAPWFGNLQARGTFSNRVNTNNKKLSSLIDGIPLEGNINKELFMHYAHNIDHLCKGERETSVVTRIISMKRPDLFISFNGANKGILKDFGISSNSFYAERYWDELLSIIYETPWFNRPEPKDPEEKLAWKYRVALLDCIYYKPQ
>NZ_CP016604.1|WP_121124117.1|1787413_1788538_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MFEPAILVLADGSVFHGKSIGYQGHTIGEVVFNTAMTGYQEILTDPSYTSQIVTLTYPHIGNTGTNNEDEESNRVYASGLIIRDLPLLHSNFRSNSSLSDYLIHHKIVAIADIDTRRLTRILRDKGAQAGCIYVGTDETEALALAKSFGSMAGKDLAKEVTCKELYQWKESEWKLGQGYVTQQKAEFHVVAYDFGVKRNILRMLAERGCRLTVVPATTSAEAVLALNPDGIFLSNGPGDPEPCEYAITAIKKLLATKKPIFGICLGHQLLGLATGGKTKKMAFGHHGANHPVQDLATQKVLITSQNHGFEVDENSLPSNVKVTHRSLFDNSVQGIELTDQVAFSFQGHPEASPGPNDVAYLFDKFVDELRNIGQ
>NZ_CP016604.1|WP_121124119.1|1786791_1787115_+|alkylphosphonate-utilization-protein
MDFPICPTCKSENTYHDSIQFVCPDCAYEWTGEEIEEQDDDKLIVKDSNGNLLSDGDDVLLIKDLKLKGSSEVLKKGTKFKGIRLVSGDHNVDCGKLLLKSEFLKKA
>NZ_CP016604.1|WP_121124121.1|1785631_1786579_-|cysteine-synthase-A
MKIHSDHSEAIGNSPLVRLKNFGKNGNILAKIESRNPSFSVKDRIGANMVWQAEKDGILTKGKEIVDATSGNTGIALAYVAAARGYKLTIVMPETMSIERRRLLKGLGATLVLTEGAKGMKGAIAKAEEIIASNPDHYVMLKQFENPANPAIHEQTTGPEIWNDTEGKVDVFVAGVGTGGTITGTTRYLKKQGKEIISVAVEPEESPVITQTLNGEEVKPGSHKIQGIGAGFIPKNLDLSLIDRVEKVDSNTAIETARRLMAEEGILAGISSGAAVAAADRIAQLPEFADKTIVVILPSASERYLSTALFEGIEA
>NZ_CP016604.1|WP_121124123.1|1785197_1785548_+|fumarate-reductase-subunit-FrdD
MKEAPKRSNEPVVWLLFGAGTTVTAILFPVLILLIGFLLPFGLISPENVFGFVSFLHSWIGKLVILIVLIFSVWGAMHRIHHGMHDFKLHIPAGGVIFYGLSVLYSVLAFFAVINL
>NZ_CP016604.1|WP_121124125.1|1784787_1785189_+|fumarate-reductase-subunit-FrdC
MTTTASKRKKYVREVKPTWWKRLDFYKLYIAREATSVPTLWFCLVLLYGVISLGNGLPGFSDFVDFLQNPIVVILNIIALAAAVLNTVTYYKMVPKVLNIIVKNQRINPNIITLSLWALTAIVSVVILILMYI
>NZ_CP016604.1|WP_121124127.1|1784004_1784775_+|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit
MVNKNKMTVEVLRYNPEQDNEPFLSKYEVPYDSQTSLLDALGYIKDELEPELSYRWSCRMAICGSCGMMVNGKPKLACKTFLRDYSGYMRIEPLANFPIERDLVVDLSHFIESLESIKPYIIDNKEPELDGNPHPSAELAKSRTKQTPAQLEKYRTFSMCINCGLCYAACPQFGLNPEFVGPAALTLAHRYNLDNRDNGKAERMKIINGKNGVWSCTFVGYCSEVCPKHVDPASAVNQGKVESSIDYVFAMLKPQK
>NZ_CP016604.1|WP_121124129.1|1782205_1783990_+|fumarate-reductase-(quinol)-flavoprotein-subunit
MQTVNVDIAIVGAGGGGLRSAIAAAEANPNLKIALISKVYPMRSHTVAAEGGAAAVIKDTDSYDKHFNDTVGGGDWLCEQDVVEYFVEHSPVEMTQLERWGCPWSRKEDGDVNVRRFGGMKIERTWFAADKTGFHLLHTLFQTSIKYPQIIRFDEHFVVDILVDEGQARGCVAMNMMEGTFVQINANAVVIATGGGCRAFRFNTNGGIVTGDGLSMAYRHGVPLRDMEFVQYHPTGLPNTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPIGKPENKYMELGPRDKVSQAFWQEWRKGNTLKTAKGVDVVHLDLRHLGEKHLLERLPFICELAKAYEGVDPVTAPIPVRPVVHYTMGGIEVDQHAETSIKGLLAVGECASSGLHGANRLGSNSLAELVVFGKVAGEMAARRAVEASPRNQAVIDAQAKDVLERVYALARQEGEESWSQIRNEMGDSMEEGCGIYRTQESMEKTVNKIAELKERYKRIKIKDNSSVFNTDLLYKIELGYILDVAQSISSSAVERKESRGAHQRLDYEERDDVNYLKHTLAFYNADGAPTIKYSDVKITKSQPAKRVYGAEAEALEKANQGK
>NZ_CP016604.1|WP_121124107.1|1795540_1795867_-|CRISPR-associated-endonuclease-Cas2
MSEAKFMRIIVFFDLPVTTKAKQRAANQFRQFLLKDGYQMLQLSVYSRIVRGRDALEKHNKRLREHLPEEGSIRCLEVTEKQFANMQILLGKLKLQEKKVNANQMLLF
>NZ_CP016604.1|WP_121124105.1|1795859_1796774_-|type-II-CRISPR-associated-endonuclease-Cas1
MSWRSILISNGGKLSLKRGQLFIQQDIGEFSVPLEDIAVIVVESKETVITAPLLSALALNGITLMSCDNQFLPCGQWLPFAQYHRQLKILKLQMELTQPQKKQLWQKIVQQKIRNQAFVLEQSAHPKQANTLYSMANRVKSGDKENIEAQAALLYFKTAFGKDFRRWQENSVNAHLNYAYTILRSAIARSLVLYGWLPALGLFHHSEVNPFNLADDFIEPFRPLVDLCVWHLWQENKLEQGLIPKTKQNLVSLLHYQMQFQEQTFSVLAAIDRTIGSLQQAIQAKNAELLKLPEMLPLKEHQYE
>NZ_CP016604.1|WP_121124103.1|1796834_1800011_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNNSTLNYILGLDIGIASVGWAVVEIDGEENPIGLIDVGVRTFERAEVPKTGESLALARRLKRGTRRLIRRRAFRLLKAKRLLKQEGILTQDDFESSRVIKSLPHNTWELRVKGLTQLLSNKEWAAVLLHLLKHRGYLSQRKNETKTDNKELGALLSGVHSNHQLLAEKNYRTPAELALKHFYEEEGHIRNQRGAYTHTFGRLDLKQELRQLFNAQRELGNPHTSNELEQAFTELLMWQKPALSGEAILKMLGKCTLEKEEYKAAKNTYSAEYFVWLTKLNNLRILENGSERALSQEERAILIEQPYLKAKLTYTQVRKLLGLSDQAHFKGLSYRKDNAENTTLMEMKAWHAIRKALESNGLKTEWEGLKTQPDLLDKIGTAFSLYKTDEDITQYLNGCLSTDVLNTLLEHLNFDRFIHLSLQSLSKILPLMEQGLRYDEACKQVYGDHYGAKEQQEERYLPVIPADEIRNPVVLRSLSQARKIINGVVRLYGSPCRIHIETGREVGKSYKDRKEIEKRQNENQADKLRAIAHFKELFPNFVGEPKAKDILKMRLYEQQHGKCLYSGKGLDLNRLLEKGYVEIDHALPFSRTWDDSFNNKVLVLAGENQNKGNKTPYEWLDGKADTEQWKHFVSLVLGSYFSQKKKHRLLTKELDEKGFKEKNLNDTRYVARFLCNYIAENMLLTGKGKRRVFASNGQITSLLRHRWGMSKSREENDRHHAIDAIVVACSTVAMQKKITDFVRRKEMDVFSGEMVDKSTGEIQWIHFPEPWKYFRQEAEIRVFSDNPQEDLVIRLPDRPQANHQFVQPLFVSRAPTRKVTGQGHMETVKSAKRINEGISVIKVPLTQLKLKELENMVNREREQALYESLKEQLMQYNDDPNKAFAEPFYKKGGQQVKSVRVEQLQKTGVLVHNETGVADNASMVRVDVFKKKGKYFLVPIYTWQVAKGILPNKAVIQRKSEDEWEEMDETAEFQFSLFANDLIKVTTKKNAILGYFGGLDRATGNISIKEHDLNKNVVKNGIHTSVGVKLIPNFEKYQVDELGKNIRPCRKSKRLGVR
>NZ_CP016604.1|WP_121124101.1|1800283_1801108_-|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVETSVRGVSPYLVGQTIKQIIIRQKQLRWLVSDQLSAMDGANILNIYRRAKYLIIHTDKGDILIHLGMSGSLGILNTETEKEIGKHDHVDLVTTNGTILRYNDPRKFGAWLWANKAEEAELLKKLGLEPLSDEFNADYLYKQSRNKTVAIKNFIMNNAVVVGVGNIYACESLFMAGLHPDMATQNLKPKQAERLVKVIKDVLTKAIIQGGTTLKDFIQPDGKPGYFAQVLKVYGRKGQECYDCGSIIESKVIGQRNSFYCPKCQKLPR
>NZ_CP016604.1|WP_121124099.1|1801246_1802539_-|branched-chain-amino-acid-transport-system-II-carrier-protein
MKKNTLIIGFMLFAIFFGAGNLIFPPKLGLESGEHFWTAIIGFVVTGVGLPLLGIIIGAFYEGGYKEALNKVHPWFSIVFLVAIYLAIGPFFAIPRTGATAYEMAIIPFIGESTTVSLLVFTVIYFGITLWISLNPSRVVDRIGSILTPVLLVAIIALVVKAYFLLSNNELVVSTPAIEQNSFVQGILEGYLTMDALASLAFSVIVLNAIKAKTSNQTKLIKQTIGAGIIAAVALGFIYISLGWIGNHSALPAETVAELKTNGQDIGTYILNTVTAQAFGEFGRMILGIIVSLACLTTSIGLVVAVSEYFNEIFPKISYKAYAILFVLISFVLSNQGLSAVISKSVPVLLVLYPISMTIMALLLVNLFIKLPLLALRFALGLVTVVSILSVAGVEFVNGLPLKEYSMEWLPFAVVGLVVGFVIAKAMKTE
>NZ_CP016604.1|WP_121124097.1|1802654_1803383_-|3-oxoacyl-ACP-reductase-FabG
MQNKIALVTGATRGIGKAIAEELVAKGAFVIGTATSEKGAETISAYLGEKGKGLVLNVADEESIEQVLAHIKAEFGDIDILVNNAGITRDNLLMRMKDDEWFDIIQTNLTSVYRLSKAMLRSMMKKRHGRIVTIGSVVGSSGNPGQTNYCAAKAGLVGFSKALAKEVASRGITVNVVAPGFIATDMTEELTDEQKNAILSQIPAGQLGQAKDIAKAVAFLASEDAGYITGETIHVNGGLYMN
>NZ_CP016604.1|WP_121124094.1|1803413_1804349_-|ACP-S-malonyltransferase
MSKFAMVFPGQGSQAIGMLADLAPVYPVIEQTFQRASEVLGYDLWDLVQNGEATELNQTHRTQPALLAASVALFRVWQEKFPEHNPTVMAGHSLGEYSALVCSGALDFQDAIKLVELRGQLMQEAVPAGTGAMFAIIGLDNESIIKACEQAQQETGEIVSAVNFNSPGQVVIAGTKTAAEKAGALCKEAGAKRALPLAVSVPSHCALMKPAADKLAETLQNIQFSRPLVPVINNVDVAIENEADAIRDALIRQLYSPVRWTEVVEKMAEAGVTTLYEIGPNKVLTGLAKRIVADISAQAVNDVASLDAVSF
>NZ_CP016604.1|WP_121124092.1|1804401_1805106_-|epoxyqueuosine-reductase-QueH
MTEQRQAPVKKTRKGKDPNAPFVREKLSLPDGHNKLLLHSCCAPCSGEVMEAIHASGIEFTIYFYNPNIHPLKEYLIRKEENIRFAEKWGIPFIDADYDRQNWFDRAKGMENEPERGIRCTMCFDMRFEKAAEYAHEHGFPVFTSCLGISRWKDMNQINGCGHRAAEKYDDVVYWDYNWRKGGGSQRMIEISKREHFYQQEYCGCVYSLRDTNKWREANGRQKIEIGKLYYSAD
>NZ_CP016604.1|WP_121124090.1|1805114_1806098_-|octaprenyl-diphosphate-synthase
MTKQLTQEQISALAKIDMQAVDQAILSQLSSDVVLINQLGHYIVSAGGKRIRPLIAVLSANALGYKGTQHITCAAFVEFIHTATLLHDDVVDESDMRRGRATANAEFGNAASVLVGDFIYTRAFQMMTSLKSLEVLQVMSDATNVIAEGEVQQLMNVNDPDITEENYMQVIYSKTARLFEASTQCAAIVAGADEKGVTALKDYGRYLGTAFQLVDDILDYSANAEKLGKNIGDDLAEGKPTLPLLHAMRHGNEQQSALIREAIEQGGKREALDEILAIMAEHGSLDYAMQRAKEEAKKAVDAIAMLPESDYKQALVSLAYLSVDRAY
>NZ_CP016604.1|WP_121124088.1|1806244_1807519_-|HlyC/CorC-family-transporter
MESIPLSSLFIALAILLVLSGFFSSSETGLMSLNRYRMRYLAQQGHRGAKQTEKLLAKTDILLSLILICNNLVNIVASAIATMIGMRLSGDAGVAIATGLLTLVMLVFAEILPKTIAAIYPEKVGFTASYILLPLRRLLLPVVFLMNLVISGLMKLLRIRKSEKAGLSAEELRSVVLEAGRFIPSAHQEMLVSILDMEKVTVDDIMVPRNDIGGIDIDDDWKSIMRQLTGAAHARVVIYKSNMDNILGILRVREAFRLMLDRNEFTKEMLVRAVDEAYFIPEDTPLTTQLMNFRSNKERIGLVVDEYGDIKGLVTLEDILEEIVGEFTTSAAPTLEEEVQPQSDGTVLIEGSANLRDLNKLFNWHLPVDEVRTFNGLIVEHLEKIPDEGVEFTLFNLKVIVLEVSDNMVKLARVEPIPQSDDNE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016604_1	1.1\|1794698\|30\|NZ_CP016604\|CRISPRCasFinder,CRT	1794698-1794727	30	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	171032-171061	6	0.8
NZ_CP016604_1	1.1\|1794698\|30\|NZ_CP016604\|CRISPRCasFinder,CRT	1794698-1794727	30	MT787017	UNVERIFIED: Staphylococcus phage WV, complete genome	133108-133137	6	0.8
NZ_CP016604_1	1.5\|1794962\|30\|NZ_CP016604\|CRISPRCasFinder,CRT,PILER-CR	1794962-1794991	30	MN694566	Marine virus AFVG_250M779, complete genome	14010-14039	6	0.8
NZ_CP016604_1	1.7\|1795094\|30\|NZ_CP016604\|CRISPRCasFinder,CRT,PILER-CR	1795094-1795123	30	NC_011730	Gloeothece citriformis PCC 7424 plasmid pP742403, complete sequence	28973-29002	6	0.8
NZ_CP016604_1	1.1\|1794698\|30\|NZ_CP016604\|CRISPRCasFinder,CRT	1794698-1794727	30	MT080592	UNVERIFIED: Staphylococcus phage vB_SauM_EW3, complete genome	110402-110431	7	0.767
NZ_CP016604_1	1.1\|1794698\|30\|NZ_CP016604\|CRISPRCasFinder,CRT	1794698-1794727	30	MT080603	UNVERIFIED: Staphylococcus phage vB_SauM_EW9, complete genome	108767-108796	7	0.767
NZ_CP016604_1	1.1\|1794698\|30\|NZ_CP016604\|CRISPRCasFinder,CRT	1794698-1794727	30	MT080583	UNVERIFIED: Staphylococcus phage vB_SauM_EW13, complete genome	137727-137756	7	0.767
NZ_CP016604_1	1.1\|1794698\|30\|NZ_CP016604\|CRISPRCasFinder,CRT	1794698-1794727	30	MT080597	UNVERIFIED: Staphylococcus phage vB_SauM_EW5, complete genome	29579-29608	7	0.767
NZ_CP016604_1	1.1\|1794698\|30\|NZ_CP016604\|CRISPRCasFinder,CRT	1794698-1794727	30	MT080586	UNVERIFIED: Staphylococcus phage vB_SauM_EW2, complete genome	113974-114003	7	0.767
NZ_CP016604_1	1.1\|1794698\|30\|NZ_CP016604\|CRISPRCasFinder,CRT	1794698-1794727	30	MT080594	UNVERIFIED: Staphylococcus phage vB_SauM_EW4, complete genome	28137-28166	7	0.767
NZ_CP016604_1	1.1\|1794698\|30\|NZ_CP016604\|CRISPRCasFinder,CRT	1794698-1794727	30	MT080598	UNVERIFIED: Staphylococcus phage vB_SauM_EW6, complete genome	112427-112456	7	0.767
NZ_CP016604_1	1.1\|1794698\|30\|NZ_CP016604\|CRISPRCasFinder,CRT	1794698-1794727	30	MT080599	UNVERIFIED: Staphylococcus phage vB_SauM_EW7, complete genome	108796-108825	7	0.767
NZ_CP016604_1	1.1\|1794698\|30\|NZ_CP016604\|CRISPRCasFinder,CRT	1794698-1794727	30	MT080582	UNVERIFIED: Staphylococcus phage vB_SauM_EW1, complete genome	46040-46069	7	0.767
NZ_CP016604_1	1.6\|1795028\|30\|NZ_CP016604\|CRISPRCasFinder,CRT,PILER-CR	1795028-1795057	30	MN693706	Marine virus AFVG_250M92, complete genome	31814-31843	7	0.767
NZ_CP016604_1	1.7\|1795094\|30\|NZ_CP016604\|CRISPRCasFinder,CRT,PILER-CR	1795094-1795123	30	NC_011281	Klebsiella variicola strain 342 plasmid pKP91, complete sequence	41201-41230	8	0.733
NZ_CP016604_1	1.7\|1795094\|30\|NZ_CP016604\|CRISPRCasFinder,CRT,PILER-CR	1795094-1795123	30	NZ_CP032357	Klebsiella variicola strain 15WZ-82 plasmid p15WZ-82_res, complete sequence	73671-73700	8	0.733
NZ_CP016604_1	1.1\|1794698\|30\|NZ_CP016604\|CRISPRCasFinder,CRT	1794698-1794727	30	MN694669	Marine virus AFVG_250M354, complete genome	8233-8262	9	0.7

1. spacer 1.1|1794698|30|NZ_CP016604|CRISPRCasFinder,CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.8

attacaaataaaaattctaaaacgtgtttg	CRISPR spacer
attacaattataaattctaaaacatctatc	Protospacer
******* ** ************.* * *

2. spacer 1.1|1794698|30|NZ_CP016604|CRISPRCasFinder,CRT matches to MT787017 (UNVERIFIED: Staphylococcus phage WV, complete genome) position: , mismatch: 6, identity: 0.8

--attacaaataaaaattctaaaacgtgtttg	CRISPR spacer
taatt--aaataaaaattataaaacttgttat	Protospacer
  ***  *********** ****** ****

3. spacer 1.5|1794962|30|NZ_CP016604|CRISPRCasFinder,CRT,PILER-CR matches to MN694566 (Marine virus AFVG_250M779, complete genome) position: , mismatch: 6, identity: 0.8

caagagtttttacagtcaaagaatatcagg	CRISPR spacer
caagagtttttacagacaaaaaaggacaag	Protospacer
*************** ****.** . **.*

4. spacer 1.7|1795094|30|NZ_CP016604|CRISPRCasFinder,CRT,PILER-CR matches to NC_011730 (Gloeothece citriformis PCC 7424 plasmid pP742403, complete sequence) position: , mismatch: 6, identity: 0.8

gttttttgtcctttatagttaaaccaagcc	CRISPR spacer
gttttttgtcctttatacttaaacactgga	Protospacer
***************** ******   *

5. spacer 1.1|1794698|30|NZ_CP016604|CRISPRCasFinder,CRT matches to MT080592 (UNVERIFIED: Staphylococcus phage vB_SauM_EW3, complete genome) position: , mismatch: 7, identity: 0.767

attacaaataaaaattctaaaacgtgtttg	CRISPR spacer
tttacaaataacaattctaaaaaattattt	Protospacer
 ********** ********** .*  **

6. spacer 1.1|1794698|30|NZ_CP016604|CRISPRCasFinder,CRT matches to MT080603 (UNVERIFIED: Staphylococcus phage vB_SauM_EW9, complete genome) position: , mismatch: 7, identity: 0.767

attacaaataaaaattctaaaacgtgtttg	CRISPR spacer
tttacaaataacaattctaaaaaattattt	Protospacer
 ********** ********** .*  **

7. spacer 1.1|1794698|30|NZ_CP016604|CRISPRCasFinder,CRT matches to MT080583 (UNVERIFIED: Staphylococcus phage vB_SauM_EW13, complete genome) position: , mismatch: 7, identity: 0.767

attacaaataaaaattctaaaacgtgtttg	CRISPR spacer
tttacaaataacaattctaaaaaattattt	Protospacer
 ********** ********** .*  **

8. spacer 1.1|1794698|30|NZ_CP016604|CRISPRCasFinder,CRT matches to MT080597 (UNVERIFIED: Staphylococcus phage vB_SauM_EW5, complete genome) position: , mismatch: 7, identity: 0.767

attacaaataaaaattctaaaacgtgtttg	CRISPR spacer
tttacaaataacaattctaaaaaattattt	Protospacer
 ********** ********** .*  **

9. spacer 1.1|1794698|30|NZ_CP016604|CRISPRCasFinder,CRT matches to MT080586 (UNVERIFIED: Staphylococcus phage vB_SauM_EW2, complete genome) position: , mismatch: 7, identity: 0.767

attacaaataaaaattctaaaacgtgtttg	CRISPR spacer
tttacaaataacaattctaaaaaattattt	Protospacer
 ********** ********** .*  **

10. spacer 1.1|1794698|30|NZ_CP016604|CRISPRCasFinder,CRT matches to MT080594 (UNVERIFIED: Staphylococcus phage vB_SauM_EW4, complete genome) position: , mismatch: 7, identity: 0.767

attacaaataaaaattctaaaacgtgtttg	CRISPR spacer
tttacaaataacaattctaaaaaattattt	Protospacer
 ********** ********** .*  **

11. spacer 1.1|1794698|30|NZ_CP016604|CRISPRCasFinder,CRT matches to MT080598 (UNVERIFIED: Staphylococcus phage vB_SauM_EW6, complete genome) position: , mismatch: 7, identity: 0.767

attacaaataaaaattctaaaacgtgtttg	CRISPR spacer
tttacaaataacaattctaaaaaattattt	Protospacer
 ********** ********** .*  **

12. spacer 1.1|1794698|30|NZ_CP016604|CRISPRCasFinder,CRT matches to MT080599 (UNVERIFIED: Staphylococcus phage vB_SauM_EW7, complete genome) position: , mismatch: 7, identity: 0.767

attacaaataaaaattctaaaacgtgtttg	CRISPR spacer
tttacaaataacaattctaaaaaattattt	Protospacer
 ********** ********** .*  **

13. spacer 1.1|1794698|30|NZ_CP016604|CRISPRCasFinder,CRT matches to MT080582 (UNVERIFIED: Staphylococcus phage vB_SauM_EW1, complete genome) position: , mismatch: 7, identity: 0.767

attacaaataaaaattctaaaacgtgtttg	CRISPR spacer
tttacaaataacaattctaaaaaattattt	Protospacer
 ********** ********** .*  **

14. spacer 1.6|1795028|30|NZ_CP016604|CRISPRCasFinder,CRT,PILER-CR matches to MN693706 (Marine virus AFVG_250M92, complete genome) position: , mismatch: 7, identity: 0.767

tttgcttgtaatcctaagattttgttgctt	CRISPR spacer
gtatcttgtaatcctaagattctgtctctg	Protospacer
 *  *****************.***. **

15. spacer 1.7|1795094|30|NZ_CP016604|CRISPRCasFinder,CRT,PILER-CR matches to NC_011281 (Klebsiella variicola strain 342 plasmid pKP91, complete sequence) position: , mismatch: 8, identity: 0.733

gttttttgtcctttatagttaaaccaagcc	CRISPR spacer
cttttttgtcctgtatggttaaaccgtcag	Protospacer
 *********** ***.********.

16. spacer 1.7|1795094|30|NZ_CP016604|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032357 (Klebsiella variicola strain 15WZ-82 plasmid p15WZ-82_res, complete sequence) position: , mismatch: 8, identity: 0.733

gttttttgtcctttatagttaaaccaagcc	CRISPR spacer
cttttttgtcctgtatggttaaaccgtcag	Protospacer
 *********** ***.********.

17. spacer 1.1|1794698|30|NZ_CP016604|CRISPRCasFinder,CRT matches to MN694669 (Marine virus AFVG_250M354, complete genome) position: , mismatch: 9, identity: 0.7

attacaaataaaaattctaaaacgtgtttg	CRISPR spacer
ttgcttcctaaaaattctaaaacttgtttt	Protospacer
 *  .   *************** *****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

836165 : 848336

Staphylococcus_phage(37.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_121121812.1\|836165_838742_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	4.6e-124	33.6
WP_121121810.1\|839162_840248_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.4e-50	37.6
WP_121121808.1\|840303_840951_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	9.4e-42	45.1
WP_121121805.1\|841014_842214_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	9.4e-96	46.8
WP_121121803.1\|842325_842787_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.1e-41	58.1
WP_121121801.1\|843109_843592_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_121121799.1\|843601_846295_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	4.6e-82	43.4
WP_121121797.1\|846368_847208_+	hypothetical protein	A0A1I9SA48	Rhodococcus_phage	3.0e-32	32.8
WP_121121795.1\|847268_848336_+	3-deoxy-7-phosphoheptulonate synthase AroG	A0A0B6VT43	Edwardsiella_phage	9.9e-81	47.1

DBSCAN-SWA_2

860186 : 977272

121

Haemophilus_phage(32.08%)

head,tail,terminase,protease,plate,capsid,tRNA,holin,integrase,portal

attL 962454:962474|attR 977392:977412

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_121121772.1\|860186_862190_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_154399693.1\|864026_864266_+	hypothetical protein	NA	NA	NA	NA
WP_121121768.1\|864430_864655_+	hypothetical protein	NA	NA	NA	NA
WP_147404740.1\|864808_865060_+	hypothetical protein	NA	NA	NA	NA
WP_121121761.1\|865865_866918_-	ferric ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.6e-33	38.2
WP_121121759.1\|866928_868980_-	iron ABC transporter permease	NA	NA	NA	NA
WP_121121757.1\|869095_870130_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_121121755.1\|870309_870765_+	DoxX family protein	NA	NA	NA	NA
WP_121121753.1\|870783_871143_+	hypothetical protein	NA	NA	NA	NA
WP_121121751.1\|871217_872141_+	DUF692 family protein	NA	NA	NA	NA
WP_121122289.1\|872142_872853_+	DUF2063 domain-containing protein	NA	NA	NA	NA
WP_121121749.1\|872928_874098_-	porin	NA	NA	NA	NA
WP_121121747.1\|874424_875597_-	porin	NA	NA	NA	NA
WP_121122287.1\|876162_876699_-	DUF1697 domain-containing protein	NA	NA	NA	NA
WP_121121745.1\|876703_878191_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	4.8e-81	44.7
WP_121121743.1\|878237_878561_-	hypothetical protein	NA	NA	NA	NA
WP_121121741.1\|878627_879866_-	ATP-dependent RNA helicase RhlB	E3T5E1	Cafeteria_roenbergensis_virus	3.3e-35	29.6
WP_121121739.1\|880053_881067_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_121121737.1\|881173_883309_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_121121735.1\|883388_884591_-	acetate kinase	NA	NA	NA	NA
WP_121121733.1\|884872_885712_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7SAX1	Vibrio_phage	3.4e-36	38.7
WP_121121731.1\|885966_886722_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_121121729.1\|886814_888185_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_121122285.1\|888708_889635_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_121121727.1\|889638_890391_+	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_121121725.1\|890421_891813_+	HemX protein	NA	NA	NA	NA
WP_121121723.1\|891816_893058_+	heme biosynthesis protein HemY	NA	NA	NA	NA
WP_121121721.1\|893336_894737_+	TolC family protein	NA	NA	NA	NA
WP_121122283.1\|894849_896298_+\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_121121719.1\|896615_898379_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_121121716.1\|898560_899202_+	stringent starvation protein A	NA	NA	NA	NA
WP_121121714.1\|899201_899621_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.2e-21	46.1
WP_121121712.1\|899707_900505_-	alpha/beta fold hydrolase	G1BRG0	Mycobacterium_phage	5.1e-05	29.0
WP_121121710.1\|900616_901177_+	replication initiation negative regulator SeqA	NA	NA	NA	NA
WP_121121708.1\|901176_902586_+	o-succinylbenzoate--CoA ligase	NA	NA	NA	NA
WP_121121705.1\|902578_905896_+	mechanosensitive channel MscK	NA	NA	NA	NA
WP_121121703.1\|905899_906982_+	chorismate synthase	A0A291AU41	Pandoravirus	2.1e-86	46.9
WP_121121701.1\|907056_907740_-	DUF1007 family protein	NA	NA	NA	NA
WP_121121699.1\|907858_909184_-	histidine kinase	NA	NA	NA	NA
WP_121121697.1\|909583_910534_+	MBL fold metallo-hydrolase	A0A1V0SGC6	Hokovirus	3.8e-07	22.8
WP_121121695.1\|910931_911645_+	UMP kinase	NA	NA	NA	NA
WP_121121693.1\|911981_912707_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.0e-28	37.5
WP_121121691.1\|912703_913456_+	ABC transporter permease	NA	NA	NA	NA
WP_121121689.1\|913485_914136_+	thiaminase II	NA	NA	NA	NA
WP_121121687.1\|914149_915094_+	thiamine biosynthesis protein	NA	NA	NA	NA
WP_121121685.1\|915104_915905_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_121121682.1\|915897_916707_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_121121680.1\|916744_917419_+	thiamine phosphate synthase	NA	NA	NA	NA
WP_121121678.1\|917408_918002_+	MFS transporter	NA	NA	NA	NA
WP_121121674.1\|918559_921130_-	hypothetical protein	A0A0M3LRW6	Mannheimia_phage	1.8e-56	57.9
WP_121122281.1\|921129_921681_-	DUF2313 domain-containing protein	A0A0M3LQE1	Mannheimia_phage	5.0e-60	62.8
WP_121121672.1\|921704_922772_-\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	3.1e-122	64.3
WP_121121670.1\|922783_923134_-	hypothetical protein	F6MIL5	Haemophilus_phage	7.8e-43	73.3
WP_121121668.1\|923190_923850_-\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	3.4e-71	60.3
WP_121121666.1\|923852_924971_-\|tail	phage tail protein	F6MIL3	Haemophilus_phage	1.2e-148	72.2
WP_121121664.1\|924954_926319_-	hypothetical protein	A0A0M3LQ21	Mannheimia_phage	1.0e-106	47.1
WP_121121662.1\|926257_928543_-\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	4.1e-92	33.4
WP_121121660.1\|928806_929157_-	hypothetical protein	NA	NA	NA	NA
WP_121121658.1\|929156_929531_-\|tail	phage tail protein	A0A0M3LRV6	Mannheimia_phage	1.7e-40	68.5
WP_121121656.1\|929544_930969_-\|tail	phage tail protein	B7SDP8	Haemophilus_phage	9.9e-161	63.1
WP_121121654.1\|930968_931163_-	DUF2635 domain-containing protein	B7SDP7	Haemophilus_phage	1.5e-08	53.3
WP_121121652.1\|931152_931788_-	DUF1834 family protein	B7SDP5	Haemophilus_phage	6.8e-77	69.7
WP_121122279.1\|931784_932222_-	DUF1320 domain-containing protein	B7SDP4	Haemophilus_phage	4.7e-45	64.3
WP_121121650.1\|932227_932452_-	hypothetical protein	B7SDP3	Haemophilus_phage	9.8e-15	55.6
WP_121121648.1\|932462_933380_-\|head	head protein	B7SDP1	Haemophilus_phage	5.6e-141	80.5
WP_121121646.1\|933376_934438_-	hypothetical protein	B7SDN9	Haemophilus_phage	2.6e-137	70.6
WP_121121644.1\|934672_935137_-	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	2.6e-38	55.8
WP_121121642.1\|935236_936514_-\|head	phage head morphogenesis protein	B7SDN5	Haemophilus_phage	6.7e-116	50.1
WP_121121640.1\|936503_938129_-	DUF935 domain-containing protein	B7SDN1	Haemophilus_phage	6.7e-230	73.7
WP_121121638.1\|938141_939764_-\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	3.5e-279	86.1
WP_121121636.1\|939763_940267_-	DUF1804 family protein	A0A0M3LQI8	Mannheimia_phage	5.2e-48	59.0
WP_121121634.1\|940269_940533_-	hypothetical protein	A0A0M3LP87	Mannheimia_phage	1.3e-13	55.2
WP_121121631.1\|940529_940790_-	hypothetical protein	F6MIK4	Haemophilus_phage	6.7e-07	63.4
WP_121121629.1\|940895_941195_-	DUF2681 domain-containing protein	NA	NA	NA	NA
WP_121121627.1\|941151_941388_-	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	3.0e-22	74.0
WP_121121625.1\|941779_942325_-	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	6.0e-82	73.7
WP_121121623.1\|942405_942828_-	mor transcription activator family protein	A0A0M3LRS6	Mannheimia_phage	4.1e-30	44.8
WP_121121619.1\|943146_943398_-	hypothetical protein	NA	NA	NA	NA
WP_121121616.1\|943397_943628_-	hypothetical protein	NA	NA	NA	NA
WP_121121614.1\|943804_944008_-	hypothetical protein	NA	NA	NA	NA
WP_121121612.1\|944017_944437_-	regulatory protein GemA	F6MIJ6	Haemophilus_phage	1.2e-45	65.4
WP_121121610.1\|944412_944790_-	hypothetical protein	NA	NA	NA	NA
WP_121121608.1\|944771_945254_-	hypothetical protein	A0A2H4JFV8	uncultured_Caudovirales_phage	4.1e-26	47.7
WP_121121606.1\|945268_946057_-	polymer-forming cytoskeletal protein	A0A076G7L7	Bacillus_phage	3.6e-11	54.4
WP_121121603.1\|946174_946372_-	hypothetical protein	NA	NA	NA	NA
WP_121121601.1\|946381_946690_-	hypothetical protein	NA	NA	NA	NA
WP_121122277.1\|946702_946894_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_121121599.1\|946984_947599_-	DUF3164 family protein	A0A0M3LQ92	Mannheimia_phage	8.6e-69	64.0
WP_121121598.1\|947595_947862_-	hypothetical protein	NA	NA	NA	NA
WP_121121596.1\|947864_948170_-	hypothetical protein	F6MII9	Haemophilus_phage	1.5e-29	68.1
WP_121121594.1\|948132_948363_-	hypothetical protein	NA	NA	NA	NA
WP_121121591.1\|948371_949253_-	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	6.6e-123	77.1
WP_121121589.1\|951228_951495_-	DNA-binding protein	NA	NA	NA	NA
WP_121121587.1\|951609_952422_+	transcriptional regulator	NA	NA	NA	NA
WP_121121585.1\|952884_953595_+	MFS transporter	NA	NA	NA	NA
WP_121121583.1\|953749_954370_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_121121581.1\|954483_955815_+	L-cystine transporter	NA	NA	NA	NA
WP_121121579.1\|955917_956157_-	hypothetical protein	NA	NA	NA	NA
WP_121121577.1\|956656_958672_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.8e-14	23.1
WP_121121575.1\|958773_960459_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.6e-53	30.7
WP_121121573.1\|960519_961983_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
962454:962474	attL	NA	NA	NA	NA
WP_121121571.1\|962743_964648_-	D5 N like family protein	Q7M2A8	Enterobacteria_phage	3.6e-57	32.7
WP_121121569.1\|964559_964796_-	hypothetical protein	NA	NA	NA	NA
WP_121121568.1\|964797_965040_-	hypothetical protein	NA	NA	NA	NA
WP_121121566.1\|965029_965239_-	hypothetical protein	NA	NA	NA	NA
WP_121121564.1\|965231_965831_-	ash family protein	NA	NA	NA	NA
WP_121121562.1\|966007_966340_-	hypothetical protein	NA	NA	NA	NA
WP_121121560.1\|966342_966540_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_121121558.1\|966679_967678_-	hypothetical protein	NA	NA	NA	NA
WP_121121556.1\|967771_968068_-	hypothetical protein	NA	NA	NA	NA
WP_121121554.1\|968136_968604_-	hypothetical protein	NA	NA	NA	NA
WP_121121552.1\|968612_970283_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	3.0e-241	70.2
WP_121121550.1\|970279_970639_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	2.7e-38	65.2
WP_121121548.1\|971199_971556_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	7.7e-30	53.4
WP_121121546.1\|971563_971869_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J711	uncultured_Caudovirales_phage	1.4e-08	31.7
WP_121121544.1\|971881_972232_-\|head	phage head closure protein	A0A2H4JHA9	uncultured_Caudovirales_phage	2.1e-08	34.8
WP_121121542.1\|972215_973430_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	7.2e-144	63.2
WP_121121540.1\|973430_973994_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	2.5e-51	57.3
WP_121121538.1\|974048_975236_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	7.3e-133	63.5
WP_121121537.1\|975248_975644_-\|tail	phage tail protein	NA	NA	NA	NA
WP_121121535.1\|976036_977272_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	7.4e-88	43.8
977392:977412	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage