CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP044330	Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence	0 crisprs	DEDDh	1
NZ_CP044328	Methylocystis rosea strain BRCS1 chromosome, complete genome	3 crisprs	csa3,DEDDh	3
NZ_CP044329	Methylocystis rosea strain BRCS1 plasmid unnamed1, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

13469 : 76578

Stx2-converting_phage(18.18%)

transposase,integrase

attL 34905:34921|attR 75648:75664

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109026981.1\|13469_15017_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.3e-129	47.8
WP_109026914.1\|15757_15970_+\|transposase	transposase	NA	NA	NA	NA
WP_109026913.1\|16650_18942_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.1e-83	35.3
WP_154454015.1\|19608_22770_-	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_124740575.1\|22766_24191_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_124740574.1\|24187_25435_-	TolC family protein	NA	NA	NA	NA
WP_109026978.1\|25431_25836_-	FixH family protein	NA	NA	NA	NA
WP_109026905.1\|29439_30186_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.8e-35	39.2
WP_109026904.1\|30187_31321_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_109026903.1\|31317_32568_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_109026902.1\|32856_33510_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_109026901.1\|34004_34574_+	hypothetical protein	NA	NA	NA	NA
34905:34921	attL	NA	NA	NA	NA
WP_154454016.1\|35781_35946_+	hypothetical protein	NA	NA	NA	NA
WP_124740573.1\|35962_36511_-	hypothetical protein	NA	NA	NA	NA
WP_109026898.1\|37128_38238_+	YncE family protein	NA	NA	NA	NA
WP_109026976.1\|38645_39227_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_109026897.1\|39248_39494_+	hypothetical protein	NA	NA	NA	NA
WP_109026896.1\|39660_40584_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_109026973.1\|40630_42454_+	hypothetical protein	NA	NA	NA	NA
WP_109026895.1\|42645_43251_+	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	2.3e-42	41.8
WP_109026894.1\|43494_43662_+	hypothetical protein	NA	NA	NA	NA
WP_109026893.1\|46065_46464_+	SirB2 family protein	NA	NA	NA	NA
WP_109026892.1\|46506_47715_-	NnrS family protein	NA	NA	NA	NA
WP_109026971.1\|50033_50747_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_109026890.1\|50967_51660_-	hypothetical protein	NA	NA	NA	NA
WP_109026889.1\|52166_52694_-	DUF488 domain-containing protein	A0A2K9L455	Tupanvirus	2.3e-22	38.8
WP_109026888.1\|52706_52916_-	DUF2945 domain-containing protein	NA	NA	NA	NA
WP_109026887.1\|53985_55569_+	MFS transporter	NA	NA	NA	NA
WP_109026886.1\|57792_58764_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_109026885.1\|59168_60302_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_109026884.1\|60312_63456_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	5.9e-73	23.6
WP_109026883.1\|63542_64829_+	TolC family protein	NA	NA	NA	NA
WP_109026882.1\|65140_65704_+	hypothetical protein	NA	NA	NA	NA
WP_124740571.1\|65775_66660_-	hypothetical protein	NA	NA	NA	NA
WP_124740570.1\|66656_67538_-	AAA family ATPase	NA	NA	NA	NA
WP_124740569.1\|67527_69189_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_154454017.1\|69286_69460_-	hypothetical protein	NA	NA	NA	NA
WP_124740568.1\|70404_70737_+	hypothetical protein	NA	NA	NA	NA
WP_124740567.1\|70754_71174_-	universal stress protein	A0A1W6JNV4	Morganella_phage	4.5e-13	37.3
WP_154453168.1\|72503_73955_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	1.6e-65	32.8
WP_124740565.1\|74147_74525_+\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	7.0e-05	46.6
WP_124740564.1\|74521_74869_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.4e-30	55.7
WP_154454018.1\|74967_76578_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.2e-100	41.1
75648:75664	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP044328

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044328_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044328_1

62012-62120

Orphan

Consensus_repeat	Method
CGCCGCCATAGCCGTAATAGCCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044328_1

>merge|NZ_CP044328|1|62012-62120|CRISPRCasFinder
CGCCGCCATAGCCGTAATAGCCCGGGCTGCCGCCCCAACCATACGAGCTGCCATAGGTCGGCCAAGCGGAGCCATAATAGCTGGCGCCGCCATAGCCATAATAGCCCGG

>NZ_CP044328|1|1|62012-62120|CRISPRCasFinder
CGCCGCCATAGCCGTAATAGCCCGG	GCTGCCGCCCCAACCATACGAGCTGCCATAGGTCGGCCAAGCGGAGCCATAATAGCTGG
CGCCGCCATAGCCATAATAGCCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044328.1\|WP_029648847.1\|57121_58531_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
NZ_CP044328.1\|WP_154450584.1\|52857_53481_+\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	unknown	unknown	gnl\|CDD\|372627
NZ_CP044328.1\|WP_154450587.1\|60810_61740_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP044328.1\|WP_154450582.1\|50171_50795_+\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|167205
NZ_CP044328.1\|WP_154450583.1\|50994_52569_-\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP044328.1\|WP_109026693.1\|69322_69580_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180828
NZ_CP044328.1\|WP_154450585.1\|58574_60122_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP044328.1\|WP_154450586.1\|60097_60814_-\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|119440
NZ_CP044328.1\|WP_154450590.1\|65358_67233_-\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP044328.1\|WP_026222964.1\|71677_72286_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP044328.1\|WP_018408347.1\|53685_54084_+\|cytochrome-c-family-protein	unknown	unknown	gnl\|CDD\|226005
NZ_CP044328.1\|WP_154450589.1\|63795_64347_+\|phosphatidylserine-synthase	unknown	unknown	gnl\|CDD\|197215
NZ_CP044328.1\|WP_154453693.1\|54476_56978_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|227115
NZ_CP044328.1\|WP_109026688.1\|62721_63786_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP044328.1\|WP_154450592.1\|69812_70568_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP044328.1\|WP_154450581.1\|49349_50156_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_CP044328.1\|WP_154450593.1\|71208_71598_+\|DoxX-family-membrane-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP044328.1\|WP_154450591.1\|67294_69127_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NZ_CP044328.1\|WP_029648854.1\|64343_65333_+\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP044328.1\|WP_109024943.1\|70585_71197_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040

Protein	Function_ID	Function_description	E-value
NZ_CP044328.1\|WP_029648847.1\|57121_58531_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	1.77614e-104
NZ_CP044328.1\|WP_154450584.1\|52857_53481_+\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	gnl\|CDD\|372627	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily.	5.91982e-67
NZ_CP044328.1\|WP_154450587.1\|60810_61740_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	6.21544e-136
NZ_CP044328.1\|WP_154450582.1\|50171_50795_+\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|167205	PRK01295, PRK01295, phosphoglyceromutase; Provisional.	1.38879e-137
NZ_CP044328.1\|WP_154450583.1\|50994_52569_-\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	4.75206e-118
NZ_CP044328.1\|WP_109026693.1\|69322_69580_-\|acyl-carrier-protein	gnl\|CDD\|180828	PRK07081, PRK07081, acyl carrier protein; Provisional.	2.27445e-28
NZ_CP044328.1\|WP_154450585.1\|58574_60122_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	5.6551e-56
NZ_CP044328.1\|WP_154450586.1\|60097_60814_-\|uroporphyrinogen-III-synthase	gnl\|CDD\|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	1.15493e-39
NZ_CP044328.1\|WP_154450590.1\|65358_67233_-\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	5.89674e-117
NZ_CP044328.1\|WP_026222964.1\|71677_72286_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	2.85522e-39
NZ_CP044328.1\|WP_018408347.1\|53685_54084_+\|cytochrome-c-family-protein	gnl\|CDD\|226005	COG3474, COG3474, Cytochrome c2 [Energy production and conversion].	6.46209e-43
NZ_CP044328.1\|WP_154450589.1\|63795_64347_+\|phosphatidylserine-synthase	gnl\|CDD\|197215	cd09116, PLDc_Nuc_like, Catalytic domain of EDTA-resistant nuclease Nuc, vertebrate phospholipase D6, and similar proteins. Catalytic domain of EDTA-resistant nuclease Nuc, vertebrate phospholipase D6 (PLD6, EC 3.1.4.4), and similar proteins. Nuc is an endonuclease from Salmonella typhimurium and the smallest known member of the PLD superfamily. It cleaves both single- and double-stranded DNA. PLD6 selectively hydrolyzes the terminal phosphodiester bond of phosphatidylcholine (PC), with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLD6 also catalyzes the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Both Nuc and PLD6 belong to the phospholipase D (PLD) superfamily. They contain a short conserved sequence motif, the HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), which is essential for catalysis. PLDs utilize a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit. This subfamily also includes some uncharacterized hypothetical proteins, which have two HKD motifs in a single polypeptide chain.	4.11338e-45
NZ_CP044328.1\|WP_154453693.1\|54476_56978_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|227115	COG4774, Fiu, Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism].	2.8068e-80
NZ_CP044328.1\|WP_109026688.1\|62721_63786_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP044328.1\|WP_154450592.1\|69812_70568_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.43223e-08
NZ_CP044328.1\|WP_154450581.1\|49349_50156_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	3.91717e-118
NZ_CP044328.1\|WP_154450593.1\|71208_71598_+\|DoxX-family-membrane-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	6.99787e-11
NZ_CP044328.1\|WP_154450591.1\|67294_69127_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP044328.1\|WP_029648854.1\|64343_65333_+\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	1.917e-148
NZ_CP044328.1\|WP_109024943.1\|70585_71197_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.71389e-115

>NZ_CP044328.1|WP_154450587.1|60810_61740_-|hydroxymethylbilane-synthase
MTSPPSLCIGTRGSPLALAQTHMVRDSLMRAHGGSESDFPVEIIRTTGDQIQDRPLSESGGKGLFTKELDSALIAGTIDLAVHSSKDLPTHLPSEIIIAGYLPREDARDAWISRGGLALDALPAGAVVGTASLRRAAQVKRRRPDLVTTLLRGNVETRLKKVENGEIDATLLAVAGLKRLGLADRATALLSLEEFPPACGQGAIGLTRRAGDDATRDLLAPLFDEATGFALIAERAFLAALDGSCRTPIAGHAQVHGAELSFVGEVLRADGAEAYVVRRRGLAIDAALIGADAGKEILLRLPHGVAGLM
>NZ_CP044328.1|WP_154450586.1|60097_60814_-|uroporphyrinogen-III-synthase
MNLVLVLRAAEDAARTAGKLQALDCAAVLSPVLEFAATDVVIPPGDYDAVIVTSAKGVEFTGDARQFRAAPLHAVGEKTAEAARALGFHPDIVAGNAEAILPHLLERYRRPTHFLYLAGRDRQPILEAGLRAAGHEVHTVEVYEARAARALTAEAVSDIAARRVTAGLHYSRRSAEIFLQLAQSAGLADALHDMTHVALSEHVAAPLRKLGLQTLVAAKPDEEHLLSLLSIQLRTKTP
>NZ_CP044328.1|WP_154450585.1|58574_60122_+|serine-hydrolase
MAFTRRSALLASGLGLLSPTALAKENSKPSPVREPTQKHLNELNGLVVDVMRKTGVPGMSVAVVSPDRVLYLKGFGVRRAGAAERVDADTVFQLASLSKPLSTTAVASLVGEGVVSWDHPIVRSLPDFAMSDPWVTREITLRDMFCHRSGLPDHAGDLVEDIGYDRNEIIRRLRYIKPDTSFRTHYAYNNMGFSAAGFAAAKAAGKSWEEICEEHLYRPLGMANASSRHADFVARRNRAFGHVRRGDRWVVGEQRDPDAQAPAGGASASVRDMATWVRMQLGRGALDGREIVKPEALADTHFPQIATGPAHDPMRGPTFYGLGWDIDYGGPARVRWSHSGAFSLGASTCVYVMPVERFGIVVLSNSAPVGAPETICRSFLDIVLTGKIERDWFALFGEAFAKMAVPTYGRDADYAKPLASAPARASRATYVGAYRNELYGPIGVVETADGLSLTLGPTPTPYPLRHYSGDIFTFQPPGENASGVSPVRFSRSGEKAISVVIDYFNANGQGVFVRS
>NZ_CP044328.1|WP_029648847.1|57121_58531_+|uroporphyrinogen-III-C-methyltransferase
MTRKPDEISADLMQPLATLPVFYALAGRRVLVIGGGEAAAWKVDLAAATGARVDVFAPAPCDKLREIGAARDNVSIHPRAVAPEDFAGAAMALGAVEDDSLARQAHQWARAAGVPINLADRPALSDFIMGAIVNRSPLVIGVSTGGASPVFAQAVRGRIETLVPATFQAWARAAQAWRPFVRTSGLDFLARRDFWRRFTRLAFRDIERAPQEDDRAALIEEARAGAKATARGRVTLVGAGPGDPELLTLKGMRALAGADVVLFDDLVPASILDLARREATRINVGKRGYAPSVRQEEISALLVELAREGKNVVRLKGGDPLIFGRANEEIAALREAGFSIEIVPGVTAACAGGAAIGASLTSRETARRLQFITAHTKDGEFPEDFDWGALADERATTAVYMGNRTLPELSRRLLQEGMSHDTPAFLIERASTPQERVVKGTIADLPSKAAEQTIVGPVMVLIGWALAEN
>NZ_CP044328.1|WP_154453693.1|54476_56978_+|TonB-dependent-siderophore-receptor
MTGAASVGALTLAAALTPTLPALAQSQSGPLPPIRVEAPPEKPRAVAQAKPKPVASQARSASGAQKLPPIDVGGARRSARVAPVRSALVTGATVSSGTVGAASTGAGSAAFAAAVANVGRNPTDVHGYFAGRISTATKTNTPILNIPQSVTVLTRQQLDDRNSLALENALAYVPGVTVAQGERNRDQITIRGQNTTADFYIDGVRDDAEYYRDLYNIQAVEVLKGPSALIFGRGGGGGVVNRVTKKADGETINDLRFVTGSFGRKRVTADFGRAVTDTIAVRLNALYEQSYGYRDFDKLERWGVNPALSWKPFENTFVLFNYEHFRDRRTVDRGVPSFGGFQFLGENIYPGYPLPTPRSAFFGVGNPSVRDVNYSRINMDRAALVIDHTTEFGLNIRNQLAWANYDKLYQNTFPDQTLGQLSQQLNPALNGLSPITITPVGVARLDGYLAPTPRRNIFNQTDLTYKFEMTPEIRHLMLVGAEFGNQWSFTGRDISRFNNPFNGPRRLTTPFWAPTVYAPVFFDNYFDTATRRWNTNLDIGSGYVQDQIEVTKYFDVLAGVRFDSFHMRFNDGITFENQSRLDNKWSPRFGLIFKPVEIVSLYGTYSRSFLPQSGDQFNQLPRSAASLAPQGFENIEFGFKAQLLPTLLFTGAIYQLNRSNQALTLTALTSVLANTRTQGAELGLTGNVTDEWQVSLGYGHQDARVVSTDAAFNPRQPFLTDVGKVNPSVPRNTFSYWNRYDLSSFVGGGPGVLGVGAGVIYASSFYPSLDNRVIVPGYARVDGALFVKVTENISGQLNIENLTGAYYYASAHNNNNIMPGAPRSAYVTVNARF
>NZ_CP044328.1|WP_018408347.1|53685_54084_+|cytochrome-c-family-protein
MKTISLLTFAASVAFAASAGQALAAGDPAAGEKIFAKCKACHQVGETAKNAVAPQLNGLDGRKAGSVEGYNYSEADKNSGIVWDEASFKEFIKNPKAKIPGTKMIFQGLPNDADQENVWAYLVQFGPDGKKK
>NZ_CP044328.1|WP_154450584.1|52857_53481_+|alpha-ketoglutarate-dependent-dioxygenase-AlkB
MSEIGPGAFHYPSFLDAAAQTALAEEIAKVIAAAPLYVSTMPKTGAPMSVRMTNCGALGWVSDKERGYRYEPRHPQTGNPWPAMPQRLLELWNELVHYHKPPEACLVNVYDETARMGLHQDKDEADFAAPILSLSLGADCRFKLGGTRRGDGAIALTLSSGDALVLSGLARMRYHGVDRILPTIGATLPAALAALGARVNLTLRRVT
>NZ_CP044328.1|WP_154450583.1|50994_52569_-|response-regulator
MLSALSEWLFDTSGLSPHGYCLLWEPGLIWLYAVSDATIALAYFSIPLTLVIVGKRRSDLIFRPLLWLFAAFILLCGMTHLFDLFTLWAPLYGLQGLVKAATAIASVATAVALWWAMPNFLALPSMEQLRHANAALLASEEQLAQAQKMEALGQLTGGIAHDFNNVLQVIVASLDVIERQIALGRANAIDGPLAAIRKASTTASSLTNRMLAFSRRQTLLPREIDSNKLVAGIEEMLRRTLGPEIHLDLRLGCRWSVSCDPSQLESVLLNLAINARDAMPQGGALRIATADRTLASDSSDPDVEPGDYVEIEVTDSGVGMNHDLLSRVFEPFFSTKPTGQGTGLGLSQVYGFVKQSGGHVRIESAPGEGTRARIYLPGHAPLPSPAAKDQPPTGAKFDSPCATHQGKTLVVEDQEEVRSLIVGALAEMGYDTIEAGDGTAGLKIIESGEPLDLLISDVGLPGLGGLQLADAARAAHPDLPILLITGYAGKSTETLQLAPNMELLRKPFTLDELAERVQAMFKGT
>NZ_CP044328.1|WP_154450582.1|50171_50795_+|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase
MSMNRTLVLVRHGQSEWNAKNLFTGWKNPDLTPLGIEEARRAGRELKKRDILFSVGFTSALLRAQHTIDLIFEELGQTSVPTIKDRALNERHYGDLSGLNKDEARDKWGEEQVHLWRRSYDVPPPGGESLKDTVARVVPFYVQRILPPVMRGERALVAAHGNSLRALCMVLEQMTPESVTTLELTTGVPIIYQLNADSTVASKTVLA
>NZ_CP044328.1|WP_154450581.1|49349_50156_+|4-hydroxy-tetrahydrodipicolinate-reductase
MNELRLVVVGAAGRMGRMLTQIIPDTLGVRLTAALERPGSPALGADSGGGAPNGVPITSDVGAALGDADAIVDFSTPSTSVELARAAARARVAHIIGTTGLSQEDLAAIAECARDTAIVRSGNMSLGVNLLAVLVERAARALGPAWDAEIVEMHHRLKVDAPSGTALLLGEAVAHGRGIDLGENSARGRDGLTGPRRIGEIGFASLRGGTVVGDHTVVFAGAGERIEFSHRAEDRGVFARGALAAALWTREKAPGLYSMADVLGLTGA
>NZ_CP044328.1|WP_109026688.1|62721_63786_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MRVLGIETTCDETAVAVVSERLGGEGGEILSNEVLSQIARHAAYGGVVPEIAARAHIDVLDRLIRRALERAKTEAKDLDGIAAAAGPGLIGGVLVGLTAGKAMALALGKPFIAVNHLEAHALTARLTDRLDFPFLALLISGGHTQIVAVKAIGDYRRLGSTVDDAAGEAFDKVAKMLELPYPGGPQIEKLALEGDARRFDFPRPMLGREGADFSLSGLKTAVRQEILRLPTLSEKDVRDLAASFQAAIVDVIVDRVRSGVRLFTASEGRAPQGLVIGGGVAANGAIRRALMRLCAESGLRFISPPAALCADNGAIIAWTGLERLKRGLTDDLDFAPRPRWPLDAAPSRSHHGKA
>NZ_CP044328.1|WP_154450589.1|63795_64347_+|phosphatidylserine-synthase
MRLLFSAALAAMTLAPTPQPSGLLAEEPTFAGVRVFYGPGDGFGAVDGRLINDARRSIDMAAYVLTDRSLTTALGRAAMRGVKVRIYLDGEEMGRGASVIEEIADAPNVEVRRKGRSRDLMHLKSYQVDGRVLRSGSANFSVSGEIYQDNDLIVIESPQAAARFHQTFERLWSRPDNQRIGVR
>NZ_CP044328.1|WP_029648854.1|64343_65333_+|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase
MTRATVAVLGAGAWGVALANVAAQGRARVPLWAHDPQAAEALARDRENTRRLPGLPLAAAVAPTSDISVVREADIVLAVTPAQAIRMTARAARPHMRERAAFVICAKGIERDRRKFLSEVAKEELPHVDVAVLSGPSFAADVCRGLPTAVTLAAHDETLARRLSEELSTKTFRLYRSTDVRGAEIGGAAKNVLAIAAGMSHGRGLGASAQAALIARGFAELMRLGRALGARQETLMGLSGLGDLVLTCGSSQSRNFALGEALGQGQSVEDATHGKLAEGAFTARVLVEMARAHDVELPIAEAVDSILSARLSVDGAIEALLMRPLKAED
>NZ_CP044328.1|WP_154450590.1|65358_67233_-|response-regulator
MSPTRKLVASGLFGIALGFAVLALASYVALRAELQRREAGAWLRHTIQVQNDLYQLYGLLQAAESGQRGFIITQDERYLDASSEATRKLPAVVDRLSERVRDNPKQLAIVAEMRPLLGERVEIINEAIADTRARRLDEAVQIVKSGRGKALMDRLHAIIDTMNENEQNLFDARERELNAAGGEFDAAVWAIGGIIFALAAFSFLNAQKQMNALQTSRDSLKTAYDQLIGETTRREALESQLRQSQKLEALGHLTGGIAHDFNNMLGVIVASLHLLRRKLANSSDDYIQLIDSAMDGADRAAAMVRRLLAFSRRQPLSPRPLDPNKFVSSVSDMVRRALGEKIELETVLAGGLWATKIDQHELESAIVNLAVNARDAMPDGGKLTIETANCYLDDAYASENMEVNPGQYVMIAVTDTGQGMPPEVLSQAFDPFFTTKPAGKGTGLGLSQVHGFVKQSGGQVKIYSEPGRGTCIKLYLPRFNQVEPPAELPLPRPRPLELPLGRPEELVLIVEDDDTARRVTAQGVRELGYSVLEAENGRAAIDIIRRRADIALMVTDVVMPDMDGARLAREAVFRRHSLRVLFITGYTRNAIVHNGVLDKDVKLLTKPFTLEQLAMKMRDILDSK
>NZ_CP044328.1|WP_154450591.1|67294_69127_-|dihydroxy-acid-dehydratase
MPPYRSRTTTHGRNMAGARGLWRATGMKEEDFGKPIIAVANSFTQFVPGHVHLKDLGQLVAAEIEKAGGVAKEFNTIAIDDGIAMGHDGMLYSLPSRDLIADSVEFMVNAHCADALVCISNCDKITPGMLMAALRLNIPAVFVSGGPMEAGKVVLAGKEHALDLVDAIVAGVDDSVSEADVATIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSTLATHADRRRLFVEAGHLIVDLARRYYEQDDESVLPRSIASFEAFENAITLDIAMGGSTNTVLHLLAAAHEAQVDFTMADIDRLSRRVPVLCKVAPSAPDVHLEDVHRAGGVFAILGELLRAGLLHGELPTVHSPSVSDAVARWDIAVTQSETARTFFRAAPGGVATQVAFSQDRRYKELDADREKGAIRDAAHAFSKDGGLAVLTGNLAIDGCIVKTAGVDDSILKFAGPARVYESQDAAVSGILTGDVKAGEVVVIRYEGPRGGPGMQEMLYPTSYLKSKGLGKVCALVTDGRFSGGTAGLSIGHVSPEAAEGGAIALVRDGDRIEIDIPARSIALAVSEDELATRRAEQSAKGFAPAKARPRKITTALRAYASMTTSAAKGAVRQVP
>NZ_CP044328.1|WP_109026693.1|69322_69580_-|acyl-carrier-protein
MIDTIRRLLQEHGRLHTPVEHLSDSDDLYSAGLTPFAAIRTMLALEEAFDVEFPVSMLRRQSFASITDIRDCVSKLAPSAERRAA
>NZ_CP044328.1|WP_154450592.1|69812_70568_+|hypothetical-protein
MRTPLLLPLTIMVFLGALPAGIALAQASETPSIESSGEEEGDFLFIPGIGRIPLPPGTRALGPGQGGRDVDSERRAPAAAAPPPPKDPAQQRAEEMARLYLRLEQAEDEREAKGVSAAILSRWAHSESDTINLLAARALAADAAGAPPLALKLLDYVVALSPQWTEGYVQRAKVRAEQGDDSGAIADLETAATLEPKRFDALAALGALKEKTGDKKGSLAAYRKSLAISPRQESLQKIEERLHIEVEGRDI
>NZ_CP044328.1|WP_109024943.1|70585_71197_+|malonic-semialdehyde-reductase
MTTTDRQAAGAVAPEAMEQLFTGARTHNGWLPIDVPDSLLELAVDYAKWGPTSANCSPMRIIFVRSPQAKARLAPAMSDANRPKTMAAPATAIVAYDLDFTETLPHLYPATDARSWFVGNQTLIEETAFRNGSLQGAYLLLALRAVGLDCGPMSGFDRAKVDAEFFQGTRIKSNFLINIGYGDHAKLYPRGPRLACEEIASIL
>NZ_CP044328.1|WP_154450593.1|71208_71598_+|DoxX-family-membrane-protein
MTIRIIPQRFAPHAQGLLRIAAALLFMQHGAAKLFGVPHVAMFDDLKLFSLLGAAGVLELFGGLLLLLGLFTRPVAFILSGQMAVAYFFFHAGQDLWPLLNKGELAALYCFVFLFFAAAGPGAFAIDRE
>NZ_CP044328.1|WP_026222964.1|71677_72286_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MSQTALTAKRRSQALALPNLLTYGRMAAVPVVAGLLLGFTEHWARWGALGIFIAAGVTDFLDGYFARIWQQQSPLGRMLDPIADKLLVATTLMALVADRTVAGWTIWAAIIILCREILVSGLREHLAELKVRLPVSAIAKWKTAAQLVALGFLIAGPAGEVVLPGTVKIGAALLWAAAILTLYTGFDYLQSAWNHFGEDEAA

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Crispr_ID: NZ_CP044328_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044328_2

1067497-1067594

Orphan

Consensus_repeat	Method
CCTTCTCCCGCAAGCGGGAGAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044328_2

>merge|NZ_CP044328|2|1067497-1067594|CRISPRCasFinder
CCTTCTCCCGCAAGCGGGAGAAGGGCAAGCGCCAATCATCGCTGCAAACGCAATAGCGAAGCGTCGCCGTTCTTCCTTCTCCCGCAAGCGGGAGAAGG

>NZ_CP044328|2|2|1067497-1067594|CRISPRCasFinder
CCTTCTCCCGCAAGCGGGAGAAGG	GCAAGCGCCAATCATCGCTGCAAACGCAATAGCGAAGCGTCGCCGTTCTT
CCTTCTCCCGCAAGCGGGAGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044328.1\|WP_154451250.1\|1059677_1060895_+\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|181674
NZ_CP044328.1\|WP_154451253.1\|1062934_1063408_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044328.1\|WP_154451266.1\|1075741_1076335_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379901
NZ_CP044328.1\|WP_154451262.1\|1072062_1073181_-\|methylamine-utilization-protein-MauG	unknown	unknown	gnl\|CDD\|188554
NZ_CP044328.1\|WP_154451265.1\|1075408_1075678_-\|DUF4242-domain-containing-protein	unknown	unknown	gnl\|CDD\|379428
NZ_CP044328.1\|WP_154451263.1\|1073345_1074095_-\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
NZ_CP044328.1\|WP_154451261.1\|1071177_1071603_-\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|376392
NZ_CP044328.1\|WP_154451258.1\|1066762_1067458_-\|NAD-dependent-protein-deacylase	unknown	unknown	gnl\|CDD\|234777
NZ_CP044328.1\|WP_154451255.1\|1064754_1064997_+\|PbsX-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225215
NZ_CP044328.1\|WP_026222788.1\|1071635_1071770_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NZ_CP044328.1\|WP_154451256.1\|1065059_1065413_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP044328.1\|WP_154451251.1\|1061154_1061622_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350353
NZ_CP044328.1\|WP_154451264.1\|1074091_1075375_-\|selenium-binding-protein	unknown	unknown	gnl\|CDD\|377548
NZ_CP044328.1\|WP_154451259.1\|1068749_1069403_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP044328.1\|WP_018407272.1\|1065942_1066647_-\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|319791
NZ_CP044328.1\|WP_154451254.1\|1063407_1064265_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NZ_CP044328.1\|WP_154451252.1\|1061584_1062754_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NZ_CP044328.1\|WP_154451260.1\|1069399_1071181_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NZ_CP044328.1\|WP_154451257.1\|1065436_1065934_+\|DUF664-domain-containing-protein	unknown	unknown	gnl\|CDD\|225200
NZ_CP044328.1\|WP_018407270.1\|1067632_1068499_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869

Protein	Function_ID	Function_description	E-value
NZ_CP044328.1\|WP_154451250.1\|1059677_1060895_+\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|181674	PRK09148, PRK09148, LL-diaminopimelate aminotransferase.	0
NZ_CP044328.1\|WP_154451261.1\|1071177_1071603_-\|ribonuclease-P-protein-component	gnl\|CDD\|376392	pfam00825, Ribonuclease_P, Ribonuclease P.	4.33755e-20
NZ_CP044328.1\|WP_154451266.1\|1075741_1076335_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|379901	pfam16925, TetR_C_13, Bacterial transcriptional repressor C-terminal.	5.36444e-28
NZ_CP044328.1\|WP_154451262.1\|1072062_1073181_-\|methylamine-utilization-protein-MauG	gnl\|CDD\|188554	TIGR04039, MXAN_0977_Heme2, di-heme enzyme, MXAN_0977 family. This model describes a subfamily of di-heme proteins related to the di-heme cytochrome c peroxidase and to MauG (methylamine utilization G), an enzyme that performs a tryptophan tryptophylquinone modification to the methylamine dehydrogenase light chain.	1.07778e-66
NZ_CP044328.1\|WP_154451265.1\|1075408_1075678_-\|DUF4242-domain-containing-protein	gnl\|CDD\|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	2.14062e-29
NZ_CP044328.1\|WP_154451263.1\|1073345_1074095_-\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	3.65312e-17
NZ_CP044328.1\|WP_154451258.1\|1066762_1067458_-\|NAD-dependent-protein-deacylase	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	6.4751e-113
NZ_CP044328.1\|WP_154451255.1\|1064754_1064997_+\|PbsX-family-transcriptional-regulator	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	1.84298e-18
NZ_CP044328.1\|WP_026222788.1\|1071635_1071770_-\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	2.07902e-11
NZ_CP044328.1\|WP_154451256.1\|1065059_1065413_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.21784e-57
NZ_CP044328.1\|WP_154451251.1\|1061154_1061622_+\|hypothetical-protein	gnl\|CDD\|350353	cd14503, PTP-bact, bacterial tyrosine-protein phosphataseS similar to Neisseria NMA1982. This subfamily is composed of bacterial tyrosine-protein phosphatases similar to Neisseria meningitidis NMA1982, which displays phosphatase activity but whose biological function is still unknown.	2.90551e-47
NZ_CP044328.1\|WP_154451264.1\|1074091_1075375_-\|selenium-binding-protein	gnl\|CDD\|377548	pfam05694, SBP56, 56kDa selenium binding protein (SBP56). This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.	1.26207e-48
NZ_CP044328.1\|WP_154451257.1\|1065436_1065934_+\|DUF664-domain-containing-protein	gnl\|CDD\|225200	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown].	5.82625e-34
NZ_CP044328.1\|WP_018407272.1\|1065942_1066647_-\|pyrimidine-5'-nucleotidase	gnl\|CDD\|319791	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p. This family includes Saccharomyces cerevisiae Phm8p (phosphate metabolism protein 8) and Sdt1p (Suppressor of disruption of TFIIS). Phm8p participates in the ribose salvage pathway, it catalyzes the dephosphorylation of nucleotide monophosphates to nucleosides, its preferred substrates are nucleotide monophosphates AMP, GMP, CMP, and UMP. Phm8p is also a lysophosphatidic acid phosphatase, dephosphorylating lysophosphatidic acids (LPAs) to monoacylglycerol in response to phosphate starvation. Sdt1p is a pyrimidine and pyridine-specific 5'-nucleotidase; it is an NMN/NaMN 5'-nucleotidases involved in the production of nicotinamide riboside and nicotinic acid riboside, and is a pyrimidine 5'-nucleotidase with high specificity for UMP and CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.85909e-69
NZ_CP044328.1\|WP_154451254.1\|1063407_1064265_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	6.06849e-176
NZ_CP044328.1\|WP_154451252.1\|1061584_1062754_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP044328.1\|WP_154451260.1\|1069399_1071181_-\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	0
NZ_CP044328.1\|WP_154451259.1\|1068749_1069403_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	8.5217e-99
NZ_CP044328.1\|WP_018407270.1\|1067632_1068499_-\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	7.79426e-152

>NZ_CP044328.1|WP_154451258.1|1066762_1067458_-|NAD-dependent-protein-deacylase
MNLFILTGAGVSAESGLGVFRGPGAALWKRYDPMQLATPEAFMRDPALVHEFYNARRRNLLAASPNAAHAALARLEAGLARRGGALTLVTQNIDDLHERAGSTRVIHMHGELLKARCVSCGAVSDRREDLSTDSRCGCDGALRPHVVWFGETPLYMEDIYAALGAADLFVAIGTSGAVYPAAGFVREARARGLRCCEINLEASENATQFDDRRYGRASEITPSWVAEILAR
>NZ_CP044328.1|WP_018407272.1|1065942_1066647_-|pyrimidine-5'-nucleotidase
MTKLLPDRSRFAAIDTWVFDLDNTLYPQTADLWPKIDARITLFMMRLFGLDAISLRALQKHYYRQYGTTLRGLMTEHGIDAQAYLAFVHDIDRSSLAHNHSLAEAIAALPGRKLILTNASRHHAVETAKQLGIDHCFEDIFDIIAADFINKPEEGAYMRFFEKLKIEPKRSVIFEDIDRNLVVPHARGMTTVLVLPAHDEGPERELWEIATGDEPHVDFVTDDLVAFLEGLIGD
>NZ_CP044328.1|WP_154451257.1|1065436_1065934_+|DUF664-domain-containing-protein
MIRSTFVQTMARYNRWQNASLYAAADSLSDEERRKDRGAFFKSIHASLNHLLWADHMWLSRISDAPRPSTPLSESASYRDDWDGLKRDRLACDDRLIAWADAVTDDWLAGDLIWRSSLMQSDMIKPKWLVVSHIFNHQTHHRGQIHAMLTAAGAKPQDTDLILME
>NZ_CP044328.1|WP_154451256.1|1065059_1065413_+|endoribonuclease-MazF
MTCAKWIIEMPYVPERGDIVWLSFDPQAGHEQKGHRPALVLSPKAYNGKTGLMLCCPMTTKIKAYPFEVALADAKPSAALADQVKSLDWRARKAKKKGAATKAEVAQALAKARTLLQ
>NZ_CP044328.1|WP_154451255.1|1064754_1064997_+|PbsX-family-transcriptional-regulator
MRATIRKWGNSAAVRMSAAVMEEARLQIDQPVDVRVEEGRVVIEPLVAREFTLDALLAGVTRDNLHEEEDFGAPVGREAL
>NZ_CP044328.1|WP_154451254.1|1063407_1064265_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MPHTGLETLIAAAFEDRANITTETQGDIRRAVDSALRLLDAGKLRVAEKIEGQEGPESWTVNQWLKKAVLLSFRLNDMAVIAGGPGGATWWDKVPSKFVGWGASEHSAAGFRSVPGAIVRHSAYVAPGAILMPSFVNLGAYVDSGTMVDTWVTVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDDCFIGARSEVVEGVVVGKGSVLSMGVFIGASTKIIDRATGKIHMGYVPPYSVVVSGSLPGKPLPDGTPGPSLYCAVIVKTVDAQTRSKTGINELLRD
>NZ_CP044328.1|WP_154451253.1|1062934_1063408_-|hypothetical-protein
MDAERLRFLYRTDQGRIDRATWRRGAGALIAVLLPLTLIWFALAPYSVHDLATTPFFAPMTILAYVYVIFYAFAVMLIVVSFINLSAKRCRDRALTPPLGLASLAPLLALLAGAAHFLQPRVAEVMSRWYVWGVDALFVAAALWTIYELGWREESLS
>NZ_CP044328.1|WP_154451252.1|1061584_1062754_-|succinyl-diaminopimelate-desuccinylase
MSESRAVALTRELIRCPSVTPADAGALDVVETALKAVGFETHRIVFSAPGTPDIDNLFAKIGAGAPHLAFAGHTDVVPPGDPARWRFEPFAAEVSDGRVYGRGASDMKGAIAAFAAAAIAYVERRGLQQGTLSLLITGDEEGVSINGTVKLLEWARGRGERFDHCIVGEPSNASTLGDMIKIGRRGSLSGRIRVIGKQGHVAYPQRAENPAPIIARIVSALSGHELDKGTTHFERSNLEFSTIDIGNPAVNVIPGEARAQFNVRFNDVWTHESLKERILQVIKEAAPTANVEVEFPPSNAVSFITKPGAFTELVIEAVRQVTGTTPELSTTGGTSDARFIVNYCPVLEFGLTNETIHAVDENARVADIDGLCAVYARIIERYFESASAR
>NZ_CP044328.1|WP_154451251.1|1061154_1061622_+|hypothetical-protein
MTEAMADPVDIYNWLRLDARTTTSGQPTQAQFDEIAALGVREVINLAPATSEKALKNEAEILAALDLRYTHIPVDFQNPTEEDFDRFREAFEGASEAATHVHCIANYRVSAFVYLYRISAGMEEARARADLEKIWTPNPVWAAFIERMQTRNSAR
>NZ_CP044328.1|WP_154451250.1|1059677_1060895_+|LL-diaminopimelate-aminotransferase
MSDFYRIKRLPPYVFEQVNRLKARARAGGADIIDLGMGNPDLPAPKHVIDKLVETAGKPRTDRYSASKGIAGLRRAQAGYYARRFGVTLDPESQVVATLGSKEGFANMAQAITAPGDVVLVPNPSYPIHAFGFLMAGGVIRSVPSAPTPDYFVALERAIIHSIPKPIAVVVCYPSNPTAEVASLDFYKDLVAFAKKHEIFVLSDLAYAEVYFDDNPPPSMLQVPGAMDVTVEFTSMSKTFSMAGWRIGFAVGNERLLSALARVKSYLDYGAFTPVQVAAVAALNGSDDCVKEMRAIYKRRRDVMVESFAQAGWPIPAPRASMFAWAPAPERFRNISTLEFSKLLIEKADVAVAPGEGFGEHGEGFVRLALVENEQRIRQAARNLRRFFETADAQLHNVVPLAARG
>NZ_CP044328.1|WP_018407270.1|1067632_1068499_-|acetylglutamate-kinase
MTDAVDTALQQARILMQALPHMLRYDDAIVVVKYGGHAMGDDQVARDFSRDMVLLEQSGVNPVVVHGGGPQIGAMLKRLGVESRFADGLRITDEETMDVVEMVLAGSINKQIVGYINSEGGRAIGLTGKDGRMVTAKKIERPDGVDLGFVGEPDKVDTTVLDQVLGRELIPVLAPVAEGPRGESYNVNADTFAGAIAGALHAKRLIFLTDVPGVLDKDKQIIQELKVGDIPGLIAEGVITGGMIPKVETCMYAIERGVEGVVILDGKLPHAVLIELLTDHGAGTLITR
>NZ_CP044328.1|WP_154451259.1|1068749_1069403_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MTETDFSEPGRLLFAGPCDFIFASAKSSDLPVIGPPEIAFAGRSNVGKSSLLNALTNRKTLARVSNTPGRTQQLNFFALGGAPGAERLRLVDMPGYGYAAVGKEKVANWSQLMRDYLKGRASLARVFVLVDGRRGVKPLDEEMFDLLDHSAVSYQVILTKYDELKIAERDDVLAATMKALEKRPAAFPEVIFTSAHGGEGIPELRAAIAKLLAERNA
>NZ_CP044328.1|WP_154451260.1|1069399_1071181_-|membrane-protein-insertase-YidC
MSENVKNMILAAALSLVFIGLWDYFYAFPEIDKQRRAQTQQEQIAKVPQLGAPERVTAGQPPVKAAPKTRAEALALSPRIAIDTRSISGSIALKGGRIDDVSLKNYRETVDPSSPIITLLSPEDGPSPYYAELGYLTAETENAPVLPTTETLWTTDADGLTTAKPVTLTWDNGHGLVFKRVISVDDEYLFTVKDSVENKAGAPVTLFNYARVSRLGHPPSAGYAALHEGFVGVVGETGEEVTYDKIEKEDNAVKTYKGVGGWVGLTDKYWAAVVAPDQNLPMEARFASMGGAVKTYQADTVSDQKTIEPGKSAEATTYVFAGAKVVDVLDAYKANPGLKRFDLLIDWGWFYFITRPMFRLIDFLYKLLGNFGLAILAVTVIVKLAFLPLANKSYQSIAKMKAIQPRIKELKEKYGDDKHKFNMEQMELFKREKVNPASGCLPVIVQIPVFFSLYKVLVVTIEMRHAPFFGWIRDLSAPDPTNVFNLFGLLPFDPTHVAIFGPYLALGVWPLLMGVSMWLQMKMNPEPADEIQKTMFAWMPVIFTFTMGGFASGLLIYWTWNNLLSIVQQGVIMKRAGVRFEFWDNLRKTFQRA
>NZ_CP044328.1|WP_154451261.1|1071177_1071603_-|ribonuclease-P-protein-component
MKAQVPAEDEKSPRPETLRRRGDFVRAARGARVALPAFTVQMAPRELTDSHAPARFGLTVTRKVAGAVGRNRIRRRLREALRLGGALGAKPGRDYVFVARPVSLSAPFAELLAQMTEGLARLNDRGAARPRRKQEDRLTRS
>NZ_CP044328.1|WP_026222788.1|1071635_1071770_-|50S-ribosomal-protein-L34
MKRTFQPSNIVRKRRHGFRARMATVGGRNVIAARRARGRKRLSA
>NZ_CP044328.1|WP_154451262.1|1072062_1073181_-|methylamine-utilization-protein-MauG
MGWLFPPPATLRVATSPQGGGIARFLQALALLFCVGHAAAQDIQSPLGLPPVPAMVAGTPAMRRLGEKLFFDRSLSANGTLSCAMCHIPAQGFASNQSALSIGMEGRSLRRNAPSLYNVAFKKFLFHDGRETDLAAQVWGPLLAADEMGNSGIGALIARLRADADYGPLFEASFPGEGATMMTLGRAIAAYEASLLRGGGRFDRAVYGGERSALTPQEWRGYALFTGKAGCAACHAIGPETALFTDQSWHNTGVAFRSGATGGKRLVQLAPGVVQNVDIAAIGLAQTGALNDVGRFEISNAPTDRWAYTTPMLRGVSESSPYMHDGSLTTLAEVVEFYDRGGGANPSLDPKIRPLGLTPDEKAAIVVFLEAL
>NZ_CP044328.1|WP_154451263.1|1073345_1074095_-|SCO-family-protein
MTGKARQTEGARAPFAALVGLALLLAALLTAPLVAPLRAAETRAQPAKAEGAHLPRPGAYVLQRIQRAPEAQLLDAEGRAAQLSHYTRGAVTALAFFYAHCVDPAGCPLAWSTFETVARDANDDPLLKSRLRLVFASLDPEHDTPNVMRLLQSSENEADKVPWAFVTSRSLSDLSPLIAQMGQDFAFEADQTGRRSGAINHMLKIFLIDPDGWVREIYSAAFLTPENLLNDARTLAMEFPEANNAGAAR
>NZ_CP044328.1|WP_154451264.1|1074091_1075375_-|selenium-binding-protein
MKSLPSRAVLCALLLGSALAPAIADETCNSPFMSGLIKGQEQYLHVWTLGEKGVGDGSDKLVTIDVIPGSATYGKVIHTIAVGGRGEAHHMGFTDDRKYLWAGRLDDSKIFIFDVGSDPSTPKLVKTIDNLAESTGYVGPHTFYALPGRMLVQALSNKKDHGGVTGLITYNNAGELVTTTPMPLNDGGDGYGYDIAINPAQNRMLTSSFTGWTNYMMDLSQLIQDDSAMKNFGNTMVMWDLKAMQPLKVFSVPGAPLEIRWALKPGANWAITAGALTSKLYLIKEDEKHEWQAKAVADVGDPSKIPLPVDISISSDASSLWVNTFMDGTARLFDLSNPEAPKQVYAKKIGAQVNMVSQSWDGKRVYFTTSLLANWDKKNADNEQFLKGYSWDGKELREDFVVDFHKEGLGRAHHMKFTARAQKAEAP
>NZ_CP044328.1|WP_154451265.1|1075408_1075678_-|DUF4242-domain-containing-protein
MPKFIIERDIPGAGKMTQADLQAISQRSCAVLRALGPQTQWVESYVTGDKVYCVYIAENAAAIKEHAEQGGFPANRISEIRAIIDPATA
>NZ_CP044328.1|WP_154451266.1|1075741_1076335_-|TetR-family-transcriptional-regulator
MSRRDAKELKEKLLDRGVALLTEQGYHGTGLQELVQSVGVPKGSFYNYFESKEAFSAEVVAHYIEPFIKRLDAQLQRKDLEAATALRAYFDELIEETERLDFRGGCLLGNLIGEIGDTSDLCQTSLREAVHRYRDKLREGIARAQREGSFRTDMDAKEMADLLVNFWQGALLRMKIERSVRPLTQFCDMLLNGYFKA

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Crispr_ID: NZ_CP044328_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044328_3

3103216-3103310

Orphan

Consensus_repeat	Method
AGCGTGCCGTCATTGTCGGGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044328_3

>merge|NZ_CP044328|3|3103216-3103310|CRISPRCasFinder
AGCGTGCCGTCATTGTCGGGATCCGCGTCCTTGAACAGGGAGGAGACCATCGTCAGAAATTCGTCCTTGGACAGCGTGCCGTCATTGTCCGGATC

>NZ_CP044328|3|3|3103216-3103310|CRISPRCasFinder
AGCGTGCCGTCATTGTCGGGATC	CGCGTCCTTGAACAGGGAGGAGACCATCGTCAGAAATTCGTCCTTGGAC
AGCGTGCCGTCATTGTCCGGATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044328.1\|WP_154453489.1\|3103650_3106050_-\|TonB-dependent-receptor-plug-domain-containing-protein	unknown	unknown	gnl\|CDD\|238657
NZ_CP044328.1\|WP_083481414.1\|3110666_3110744_-\|pyrroloquinoline-quinone-precursor-peptide-PqqA	unknown	unknown	gnl\|CDD\|178960
NZ_CP044328.1\|WP_018408752.1\|3108723_3109344_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP044328.1\|WP_154453485.1\|3099981_3100728_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|274822
NZ_CP044328.1\|WP_154453494.1\|3112183_3113821_+\|formylmethanofuran-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|274438
NZ_CP044328.1\|WP_154453490.1\|3106344_3107073_-\|DUF1614-domain-containing-protein	unknown	unknown	gnl\|CDD\|377912
NZ_CP044328.1\|WP_083481352.1\|3096287_3096575_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|378250
NZ_CP044328.1\|WP_154453484.1\|3098214_3099120_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044328.1\|WP_154453495.1\|3113808_3114717_+\|formylmethanofuran--tetrahydromethanopterin-N-formyltransferase	unknown	unknown	gnl\|CDD\|235003
NZ_CP044328.1\|WP_154453493.1\|3111092_3112193_+\|formylmethanofuran-dehydrogenase	unknown	unknown	gnl\|CDD\|239162
NZ_CP044328.1\|WP_154453492.1\|3109470_3110532_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|224771
NZ_CP044328.1\|WP_154453483.1\|3096571_3097450_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP044328.1\|WP_154453496.1\|3114713_3115523_+\|formylmethanofuran-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|274439
NZ_CP044328.1\|WP_154453481.1\|3093889_3095629_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173842
NZ_CP044328.1\|WP_109025583.1\|3099154_3099985_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|163573
NZ_CP044328.1\|WP_154453487.1\|3101913_3103092_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274821
NZ_CP044328.1\|WP_154453491.1\|3107283_3108615_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226930
NZ_CP044328.1\|WP_018408763.1\|3097631_3098159_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP044328.1\|WP_154453486.1\|3100828_3101782_-\|PQQ-dependent-catabolism-associated-beta-propeller-protein	unknown	unknown	gnl\|CDD\|274824
NZ_CP044328.1\|WP_154453482.1\|3095751_3096312_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP044328.1\|WP_154453489.1\|3103650_3106050_-\|TonB-dependent-receptor-plug-domain-containing-protein	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.11558e-31
NZ_CP044328.1\|WP_083481414.1\|3110666_3110744_-\|pyrroloquinoline-quinone-precursor-peptide-PqqA	gnl\|CDD\|178960	PRK00284, pqqA, pyrroloquinoline quinone precursor peptide PqqA.	1.87479e-06
NZ_CP044328.1\|WP_154453494.1\|3112183_3113821_+\|formylmethanofuran-dehydrogenase-subunit-A	gnl\|CDD\|274438	TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.	0
NZ_CP044328.1\|WP_154453490.1\|3106344_3107073_-\|DUF1614-domain-containing-protein	gnl\|CDD\|377912	pfam07758, DUF1614, Protein of unknown function (DUF1614). This is a family of sequences coming from hypothetical proteins found in both bacterial and archaeal species.	1.91036e-61
NZ_CP044328.1\|WP_083481352.1\|3096287_3096575_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|378250	pfam09723, Zn-ribbon_8, Zinc ribbon domain. This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.	1.63184e-11
NZ_CP044328.1\|WP_154453481.1\|3093889_3095629_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173842	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	1.53865e-142
NZ_CP044328.1\|WP_154453495.1\|3113808_3114717_+\|formylmethanofuran--tetrahydromethanopterin-N-formyltransferase	gnl\|CDD\|235003	PRK02114, PRK02114, formylmethanofuran--tetrahydromethanopterin formyltransferase; Provisional.	8.82992e-166
NZ_CP044328.1\|WP_154453493.1\|3111092_3112193_+\|formylmethanofuran-dehydrogenase	gnl\|CDD\|239162	cd02761, MopB_FmdB-FwdB, The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	6.58707e-54
NZ_CP044328.1\|WP_154453492.1\|3109470_3110532_-\|c-type-cytochrome	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	2.61893e-87
NZ_CP044328.1\|WP_154453483.1\|3096571_3097450_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	7.03501e-27
NZ_CP044328.1\|WP_154453496.1\|3114713_3115523_+\|formylmethanofuran-dehydrogenase-subunit-C	gnl\|CDD\|274439	TIGR03122, one_C_dehyd_C, formylmethanofuran dehydrogenase subunit C. Members of this largely archaeal protein family are subunit C of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdC) from molybdenum-containing (FmdC) forms of this enzyme.	9.81381e-56
NZ_CP044328.1\|WP_154453485.1\|3099981_3100728_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|274822	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.20777e-111
NZ_CP044328.1\|WP_109025583.1\|3099154_3099985_-\|ABC-transporter-permease-subunit	gnl\|CDD\|163573	TIGR03861, ABC_efflux_transporter_permease_protein, alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.37021e-118
NZ_CP044328.1\|WP_154453487.1\|3101913_3103092_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|274821	TIGR03863, PQQ_ABC_bind, ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	7.08129e-173
NZ_CP044328.1\|WP_018408752.1\|3108723_3109344_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.01287e-54
NZ_CP044328.1\|WP_018408763.1\|3097631_3098159_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	2.84675e-95
NZ_CP044328.1\|WP_154453486.1\|3100828_3101782_-\|PQQ-dependent-catabolism-associated-beta-propeller-protein	gnl\|CDD\|274824	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.	0
NZ_CP044328.1\|WP_154453491.1\|3107283_3108615_-\|HAMP-domain-containing-protein	gnl\|CDD\|226930	COG4564, COG4564, Signal transduction histidine kinase [Signal transduction mechanisms].	7.74844e-36

>NZ_CP044328.1|WP_154453487.1|3101913_3103092_-|ABC-transporter-substrate-binding-protein
MRSLVAAFCFVLFAAPVAAETVNVKVGVLRETHARETLSILDIPAADDTLAGALMGAADNNTTGKFTNQTFEAIDAKLEDGDDVMAALDALLDKGARFIIADLSAERLLAASERAKPKGAVLFNVSATDDRLRENDCRANVIHVAPTRSMLTDGLAQYLIWKQWRRWLLIKGSHPEDELLAQAFRNSAKKFGAKVVEERVYEDTGGGRRSDSGSVQTQRQIPVLTQNAPAYDVLVAADENEVFGGYLPYRTWDPRPVAGSGGLMPTSWDASHEQWGALQLQNRFTQTFRRLMNARDNAAWLAMRMIGEAATRTGSNDPEKLRLYLLGNDFSIAAFKGVRLTLRPWNQQLRQPILLSDGRMIVSVSPQEGFLHQTSELDTLGVDQPESKCKLK
>NZ_CP044328.1|WP_154453486.1|3100828_3101782_-|PQQ-dependent-catabolism-associated-beta-propeller-protein
MWVAALLATLIAPAHAYKAYVSNEKGNSITVLDTEKMEATSTVKVGRRPRGIALNKDGSELYICAGDDDAIQVLDTKTLKVTGKLPSGPDPELLALSPDGDVIYVSNENDNLVTLIDVKKKEMIGDIPVGVEPEGMAISPDGKLLVNTSETTNMAHLIDTQSKQIVANILVDGRPRFAEFKKDGSELWVSSEVGGTVAIIDPAKRELKQKISFEIPAMSKEAIQPIGISFTRDGKRAFVALGPANRVAVIDAETKKVEKYLLVGQRVWHLAFTPDEKYLLTANGVSNDVSVIDVASLKVVKSIPVGAFPWGVVVAPQ
>NZ_CP044328.1|WP_154453485.1|3099981_3100728_-|ATP-binding-cassette-domain-containing-protein
MTDALAIRNVSHSYGARKALDDVSFSVPAGSFTVLLGLNGAGKSTLFSLVTRLYAARHGVIDIFGHNVMREPGAALRQLGVVFQARTLDLELSVMQNLLYHAALHGIGPIDARRLGQAALARAGLADRAKDKARSLSGGQMRRVEIARALLHDPRLLLLDEPTVGLDIKARADLLALVRELVREKNLGVLWTTHLVDEIADDDQVVILHQGKVLATDRAREIVAAQGAATIGDAFARIAGISQEKLSA
>NZ_CP044328.1|WP_109025583.1|3099154_3099985_-|ABC-transporter-permease-subunit
MSEIAAPRGFTLRQYLICLSGVVWREALRFLHQRERFVSALVRPLVWLFIFAAGFRQVLGVSIIPPYETYVLYEVYIAPGLMAMIQLFNGMQSSLSMVYDREMGSMRTLLVSPFPRWFLLGSKLLAGVAVSILQVYAFLVIAYFWEIEPPTKWGYLTLLPALALSGLMLGALGMLLSSLIKQLENFAGVMNFVIFPMFFASSALYPLWRVKESSPWLYYVCEVNPFTHAVELIRFAFYEKVEWTSLAIVSAYTSAFLVAAILAYDPGRGMLMRRGG
>NZ_CP044328.1|WP_154453484.1|3098214_3099120_+|hypothetical-protein
MFQSWFRTLTARRACVLGAAALIAVGVAPARAQLVLPGAVAPTPEGTVASPTKKRSVGGEMGAAAGPAIMPKAPAEDAIVGKIIKRDGEGSAIEFSRAGADLQVAKLTLVGDDLRRSGEACRVEVAGTPLKLTARQSETGLRRYQIAFPACAFTFDVLDGAILVTNEGKACELKDAGCRADPEGLWGMSADEIDPKKGEEMLGARARVEKTLRSTFRALYDQYKKEKAIRNFIVKEQAGFSSWREEVCRSYAREPDFGYCALRLTEARAIALGAQLATGVKLPPGVVEEAAAENTKKDEKK
>NZ_CP044328.1|WP_018408763.1|3097631_3098159_+|translation-initiation-factor-IF-3
MKSIAAPQKEGPRINREIRAREVQLIDSEGKNHGVIQLPDALGIAEAAGLDLVEIAPNSTPPVCKILDYGRFRFAEQKKAAEARKKQKVVEVKEIKLRPGIDDHDYGVKMKAVRRFFEEGDKVKVTLRFRGREIAHQDIGYRLLSRVKAETATLAKVELEPSMEGRQMVMVLAPR
>NZ_CP044328.1|WP_154453483.1|3096571_3097450_+|alpha/beta-fold-hydrolase
MTSAAATLLGARRLVVPANGIEFEVFEAGAGDRLALLLHGFPQHAVMWRHLIGPLAAAGYRVWAVNQRGYGATTRPVEKVAYSLEALTADVAGLIDAADPASVSLVGHDWGGFVAWVVAIRKLRPIDALVVLNIPHPLCFRRALEQEWRQKLKSAYAALFQLPWLPERLLSARRGAGAAWLMQRAAGRDCVFSKEAMDIYRANVAAPGAARAMLNWYRAAGRDILAAEDLEAPIDAPTLVVWGMQDVALGESCLDGTECYVRDLRIERLPGVSHWTPEDAPEKVNELILGFV
>NZ_CP044328.1|WP_083481352.1|3096287_3096575_+|zinc-ribbon-domain-containing-protein
MREARRPVKSADRQFGGSEGQMPLFAYRCSDCAHQFETLSRFDETPECPACGGAHVERQLSLIARPAAGGESGDSCAAMMGGSPCPSCPALAGQV
>NZ_CP044328.1|WP_154453482.1|3095751_3096312_+|hypothetical-protein
MGKKWSFNYEERAAVARAAHQEIGRTFARLKNRNDEKDPATIAWKAAIARFRDALRLAYPGDFGEDLERLKAGDARGLEGVIRFLEADPMFFGSGYAKADLIRFINRMALTEHQAKRLRAVALAIVERRASQEFRRYCRLAAKVNHPGLQEELRSRAALGEPAVARRARWMLAYVESPPCARRAGR
>NZ_CP044328.1|WP_154453481.1|3093889_3095629_-|acyl-CoA-dehydrogenase
MTYRAPLDDIVFALRLAAGEGAIEADGVYRDLADGVAEQTLAEAAKFAEQVLLPLDQIGDRVGATYANGAVTTPPGWREAYAQWQDGGWNAIAAGEDYGGLDLPALLNAGCTEIWNAANMAFAVCPLLGHGAIEAMEAHASDALKDVYLRRIVSGEWTATMNLTEPGAGSDLGLMRTRAERAPDGSYRLFGQKIFITYGEHDLAPNIVHLVLARLPDAPAGTRGISLFLAPKFLPDETGGFTRRNDVRCAGIEHKLGIHGSPTCTMIYGDEGGAVAYLLGEENKGLACMFTMMNNARLSVGLQGVALADRATQMALGYARERKQGRTPGAKETSAITEHPDVARMLLTMASSTAAARAICYETAAAIDRGHRESDPARAAAAHERASLLTPVAKAFSTDIANETTSLAVQVFGGMGYIEETGVAQLMRDARICAIYEGTNGIQAIDLVTRKIRGGDGVALAREIDDMRAIASEADVAREALRESVEALAQASAFLTTTELAGALAGATPYLRLFALARGATLLVKGAKRAQRDVDPNAARYAALARFFAENIALAAPGLAKSVIDGGASVNESHAALGE
>NZ_CP044328.1|WP_154453489.1|3103650_3106050_-|TonB-dependent-receptor-plug-domain-containing-protein
MRYVKQVSLIALCASLATTARAQQALPTIEVGGAPLRSTARPPVQTTPSTQRAPTGRASVTSAPATPALPASPIVRYAVPAATYTITGNELQNTRAFNLPENLVRQAPGVTVNDVAGGPFLPEIDFRGFVASPIAGTPQGLAVYQNGIRINEAWGDNVYWDMIPSVAIDRFTLVTGNPLFGLNAIGGAVTLDMKNGFTWQGFELDGRFGSRGRRQASMQHGLISGPFATYMAMEALGDDGYRQFSGAHIKRFYGDVGYRGESGEIHANVTLANNKFGVSGPAPVDLTNLDESAVFTTPQTIKNTLSMFDINGVFQATPTWKLFGDIHYRAFDQARVDGNTTEFECEVDESLCESDAGDTNIPNFFNGQVALGAIDRTWTRSRTIGGTVQATNDDVYFGFHNKITFGVSYDHGWTAFSANEELGIIQPNLVVGGFGYIVEEQATGISSVSVRAANDYLGVYALDSLDLTDDLKVTAGARFNRANIALYDMRGTTLNGNGVFTRINPVAGLTYKILPNVSAYASYSEANRAPTPLELGCADPNRPCLIDNFLVADPPLKQVEAQTIEAGFRGDIAVPTVLPAYADALPGNLNWSLGVFRTYSFNDILSVPSAINGRGYFTNAGTTLRQGVESSFRYTTERVSAFLNYTHTDATFRSTIVLGAPDNPLTGTFGTGGSILVTPGANLTSVPRHRFKTGIDFAVTPLWKVGADFQYSSGPYIRGDEINLAGRLPSYGILNFRTSYQLGPNIQVYGLLENVTNTRARSFGTFFDTNDISFLAFNNPRMVSIGPPLGVYGGVKITY
>NZ_CP044328.1|WP_154453490.1|3106344_3107073_-|DUF1614-domain-containing-protein
MYSQHVDYLPLPPILYAVFMGALIALFLLIQFGVLRYAFGRIGLSSKYATLLLFASLLGSYVNIPITHFADERVVPQEMIDFFGRRYVVPVIVDWPGMILAVNFGGAIIPLFLSIYLLARNRIWIVASLATAIVAVVVHFFARIVPGAGISVPILAPPLLSAALAILLSRDFAAPLAYVSGSLGTLIGADLLNLDKIEGIGTPIVSFGGAGTFDGIFVTGILAVLIASLPLRRKTTDVSATT
>NZ_CP044328.1|WP_154453491.1|3107283_3108615_-|HAMP-domain-containing-protein
MLRRLSLRLRLSLLLGVVLALGLALGVGLLVLHAGARVRAEADGATRLARELVEATLTRLDAAPDPQAEIARLLADARRLRHVRVTLAGEETPAREDVDRAPQWFTRLVLPNAAVTRIETGRGAAIMIASNPADEIAEIWQEIVWLAIGGAGIAVAAFALVSLAVSRTLRPVATLAEGLQRLERGEHSMRVPADGSPEFVIIAERINALAATLQRLDEENRRLVRRMIHVQDEERKDIARDLHDEIGPFLFTVRAGVGALARRATAPGADPIRLAEDCARIDAQIAALQQVNRRILGRLRPAALEEMGLADALEALAQGWRDANPKVAIALSLDGASGDIEEATALTAYRIVQEALANALKHSGANRVEVVVKRSTGALHIVVRDNGAGLQATRSPSSSGLGLRGMGERVGALGGTLTLANDAKGGARLTASLPMRDGGAARH
>NZ_CP044328.1|WP_018408752.1|3108723_3109344_+|response-regulator-transcription-factor
MRVLIVDDHPIIVSGCAAMLAGEGDIDVVDARDAETGLAAFVAQKPDITVVDIGLPGVSGFELTRRILEADPQARIVVFSMNDDPIFAARAIQMGAKGYVTKNDDPYLLLTAVREVASGGVFLMPKIANRLAFEKSGAAASPLSALTARELEILRMLGRGLGMAEIADATQVSYKTIANSCSIMKRKLGARTPMELMRIALEHKLT
>NZ_CP044328.1|WP_154453492.1|3109470_3110532_-|c-type-cytochrome
MATNRSVDVRAPSFFIALVSLLFIAATAHAEPPNAKALLEDAKQNFQPIVVPSPGNDSVTAARIELGRRLFFENRVSMDGSVSCAHCHLPEKQASDGLPKAIGVFGKENPRNAPSIFNAALNFKQHWRGDRESLEDQAEKSLLGPASFGNPDQATAMSKLKAIPAYAGAFAKAFPGDKDPINSKNWGVAVGAFERTLLTPSKFDAFLAGDASALTKQEAAGLRKFIDLGCASCHNGAGVGGNSFQKFGVVSDYWKETGVATPDKGRADVTKNDADLYVFKVASLRNVAQTAPYFHDGSVADLTKAVKIMGKTQLGQDLSEKDAADIVAFLGALTGPVPPNYLALEPYPDAETK
>NZ_CP044328.1|WP_083481414.1|3110666_3110744_-|pyrroloquinoline-quinone-precursor-peptide-PqqA
MAWTTPVIVEVCVGMEITSYESAEI
>NZ_CP044328.1|WP_154453493.1|3111092_3112193_+|formylmethanofuran-dehydrogenase
METATLDGKAIALGDAYRHAGKILKEAAFPLIAGLGADVAGARAAILLAERLKGAFDHLASRETLADIDVKRSFGMFTTTANEARLRGDCVVLIGPGLTRAWPGMLERLALAEPPRRGAQAQQPRKVIWVGPEGEEANAVPGAKVIPASVPELSGVLAAWRARFGGRPVALDAEKVALIDGLVETLRNARFGVFVWSASTLDPLAIEMLQALVIELNATTRFTGVHIGGRSGASGVTQTAGWMTGFPPRTGFGRGYPEHDPWRFESSRLVDSGEADAALWISAFDGEKPAWSRDDIPLITLAPAQAAPSRGLFIKVGQPGVTHDAVLMSQETGGMTLRRASAPTDAPSVAQAIGAIMAEVSEGAWR
>NZ_CP044328.1|WP_154453494.1|3112183_3113821_+|formylmethanofuran-dehydrogenase-subunit-A
MALTVLRGGHIVDPATGQDAIGDVWFEDGRIVERPDGRSADKEIDVSGHIVMAGAIDIHSHIAGGNVNTARLLLPELHRAIRARLADTPLSTAKWSSYETGRLYAQMGFTTVVEPAMAPHHALQTHLEFNDVPIIDKGALTVLGNDDFLLGMLRDGEKDGAINDYVAQTVENTRSLGLKCINPGGVEAFKENMRAFGLDDVVPFYGLTSRQIFQSLQKSTQSLGIAHPLHLHMNNLGLAGNIDTALATIDAAQGLPLHLAHVQFYAYGKEGKNGFSSAGALFAEKINANPNVSVDVGQVMFSDTVTISSDVLKQFNSLPGAIPKKGAIFDGDANGGGIVPYVYKISNYYNAIQWAAGLELFLLIENPEQVFFTTDHPNGGPFTTYPELFALLMSADLRAQHLARLPAEVLEHTTLPSISREYTLYEIAQMSRSGAAKLFGFVDRGRLSPGAVADIAVYKPGRDVAGMFRRAALVFKDGALVVRDGQVSHYTRGKTLHIRPRYDRQITKRLDSYYDELYGLPRSIFDVPDAALPHKDAFAEVPCRI
>NZ_CP044328.1|WP_154453495.1|3113808_3114717_+|formylmethanofuran--tetrahydromethanopterin-N-formyltransferase
MPDIIRNGVTIDDNFAEAFPMSGTGILITAPNAKWARQAALTMTGFATSVIGCGCEAGIDREVPPEETPDGRPGVRALLFAMSSKDAEKQLVNRLGQCVLTCPGSAVYSTVKGEFEIKVGDALRQFGDKWQMSKVVDDRRYWRVPVMDGEFFCEGKVGLTKKSVGGGNLLIMGADWDKTMRATEAAVSAIDGVADAIAPFPGGIVRSGSKVGSKYKGMSASTNDAYCPTLRGVTKSELDADIGCVLEIVIDGLTDNAVREAMRAGLHAIIEMGPEQGAKRVGAGNYGGKLGPFHYHLKELLP
>NZ_CP044328.1|WP_154453496.1|3114713_3115523_+|formylmethanofuran-dehydrogenase-subunit-C
MKPFTFTLRQEPPQRVDLSALTPDRLAGKSVAQIEAIEIGVTRISTKVGDLFKVSEGDLKTVRFEGGSARFDLLGAKLLPGFEIHVEGDVGAQCGRLAKGGRITVAGNAGPHAASGNLGAEVEIKGDVGDFLAGPLAGELAGMAGGRVIVRGKAGERAGDRLRRGILVIEGDAGEDLGARVIAGTILVLGEAKGRVGYLNKRGSIVLARGGCFGSTYVDCGAHELTFARLFARSLRDHSASAADLLSRKLRRYGGDTAVFGKGEILTPD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

251153 : 259758

uncultured_Mediterranean_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154450709.1\|251153_252533_-	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	7.2e-15	36.6
WP_154450710.1\|252647_253337_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1J0MC50	Streptomyces_phage	3.6e-07	30.3
WP_154450711.1\|253333_254107_-	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_154450712.1\|254187_254739_+	hypothetical protein	NA	NA	NA	NA
WP_154450713.1\|254676_256101_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.0e-104	45.3
WP_154450714.1\|256322_257117_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	2.0e-49	44.8
WP_154450715.1\|257113_257617_-	preprotein translocase subunit TatA	NA	NA	NA	NA
WP_018408165.1\|257768_258005_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_154450716.1\|258171_258927_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.4e-44	45.1
WP_154450717.1\|258951_259758_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.3e-32	35.8

DBSCAN-SWA_2

1177067 : 1190706

Paracoccus_phage(44.44%)

protease,head,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154451340.1\|1177067_1177670_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	5.3e-31	50.7
WP_154451341.1\|1177824_1179051_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	1.2e-77	40.4
WP_154451342.1\|1179121_1179697_+	hypothetical protein	NA	NA	NA	NA
WP_154451343.1\|1179693_1180023_+\|head	phage head closure protein	NA	NA	NA	NA
WP_154451344.1\|1180033_1180441_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_154451345.1\|1180453_1180861_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_154451346.1\|1181031_1181388_+	gene transfer agent family protein	NA	NA	NA	NA
WP_083481301.1\|1181450_1181624_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_154451347.1\|1181620_1182214_+\|tail	phage tail tape measure protein	K7RVL7	Vibrio_phage	4.0e-07	42.1
WP_154451348.1\|1182228_1182867_+	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	1.2e-52	51.4
WP_154451349.1\|1182988_1183879_+	DUF2163 domain-containing protein	A0A1V0DY93	Dinoroseobacter_phage	5.1e-62	43.2
WP_154451350.1\|1183875_1184307_+	peptidase P60	F4YXU4	Roseobacter_phage	2.5e-27	44.5
WP_154451351.1\|1184444_1188323_+	hypothetical protein	A0A0B5A7K5	Paracoccus_phage	7.0e-225	40.1
WP_154451352.1\|1188331_1189927_+	DUF2793 domain-containing protein	A0A0B5A0F6	Paracoccus_phage	9.5e-27	36.9
WP_109025658.1\|1190094_1190706_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	1.3e-32	46.0

DBSCAN-SWA_3

1444696 : 1476605

Ochrobactrum_phage(47.37%)

capsid,integrase,plate,tail

attL 1459394:1459420|attR 1467244:1467270

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154451526.1\|1444696_1444903_-\|tail	phage tail protein	NA	NA	NA	NA
WP_154451528.1\|1444899_1445313_-	hypothetical protein	NA	NA	NA	NA
WP_154451530.1\|1445315_1447508_-\|tail	phage tail tape measure protein	A0A2H4J8X5	uncultured_Caudovirales_phage	1.9e-09	25.8
WP_154451532.1\|1447568_1447712_-	hypothetical protein	NA	NA	NA	NA
WP_154451534.1\|1447756_1448200_-	hypothetical protein	NA	NA	NA	NA
WP_154451536.1\|1448196_1448727_-	hypothetical protein	NA	NA	NA	NA
WP_154451538.1\|1448751_1450026_-	hypothetical protein	A0A219VHA7	Ochrobactrum_phage	3.2e-49	35.0
WP_154451540.1\|1450138_1451827_-	hypothetical protein	A0A097PBE3	Delftia_phage	3.3e-62	42.3
WP_154451542.1\|1451828_1452311_-	hypothetical protein	NA	NA	NA	NA
WP_154453768.1\|1452307_1453531_-	hypothetical protein	NA	NA	NA	NA
WP_154451544.1\|1453629_1454223_-	DUF4376 domain-containing protein	A0A1S5R1J2	Pseudomonas_phage	8.1e-16	46.2
WP_124739756.1\|1455336_1455540_-	hypothetical protein	NA	NA	NA	NA
WP_154451546.1\|1455551_1457819_-	hypothetical protein	A0A0A8ILB4	Aurantimonas_phage	2.2e-154	40.9
WP_154451548.1\|1457820_1458468_-\|tail	phage tail protein I	A0A0A8IL57	Aurantimonas_phage	2.3e-40	41.1
WP_154451550.1\|1458464_1459391_-\|plate	baseplate assembly protein	A0A0A8IKZ9	Aurantimonas_phage	1.1e-75	51.3
1459394:1459420	attL	NA	NA	NA	NA
WP_124739752.1\|1459461_1459860_-\|integrase	integrase	A0A219VH96	Ochrobactrum_phage	3.0e-06	29.8
WP_154451552.1\|1459871_1460105_-	hypothetical protein	NA	NA	NA	NA
WP_154451554.1\|1460116_1460773_-	hypothetical protein	NA	NA	NA	NA
WP_154451556.1\|1460769_1461291_-	hypothetical protein	NA	NA	NA	NA
WP_154451558.1\|1461287_1461773_-	phage morphogenesis protein	A0A1B0T6K4	Pelagibaca_phage	2.7e-09	31.4
WP_154453769.1\|1461772_1462240_-	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_154451560.1\|1462239_1462473_-	hypothetical protein	NA	NA	NA	NA
WP_154451562.1\|1462645_1462888_-	hypothetical protein	NA	NA	NA	NA
WP_154451564.1\|1462896_1463859_-\|capsid	capsid protein	A0A219VH83	Ochrobactrum_phage	1.1e-70	44.4
WP_154451566.1\|1463882_1464263_-	hypothetical protein	NA	NA	NA	NA
WP_154451568.1\|1464293_1465247_-	hypothetical protein	A0A219VH76	Ochrobactrum_phage	8.4e-31	30.7
WP_154451570.1\|1465636_1466848_-	hypothetical protein	A0A219VH74	Ochrobactrum_phage	2.2e-68	37.8
WP_154451572.1\|1466847_1468524_-	DUF935 family protein	A0A219VH73	Ochrobactrum_phage	1.5e-99	40.6
1467244:1467270	attR	NA	NA	NA	NA
WP_154451574.1\|1470139_1470718_-	DUF3486 family protein	A0A219VH75	Ochrobactrum_phage	2.7e-16	32.0
WP_154451576.1\|1470719_1471019_-	hypothetical protein	M4SPS4	Rhodobacter_phage	6.3e-17	46.9
WP_124739737.1\|1471015_1471417_-	hypothetical protein	NA	NA	NA	NA
WP_154451578.1\|1471654_1472296_-	hypothetical protein	NA	NA	NA	NA
WP_154451580.1\|1472392_1473463_-	hypothetical protein	A0A1W6DX33	Sphingobium_phage	6.1e-30	41.7
WP_154451582.1\|1473459_1473960_-	septal ring lytic transglycosylase RlpA family protein	NA	NA	NA	NA
WP_154451584.1\|1474031_1474448_-	hypothetical protein	A0A219VHE2	Ochrobactrum_phage	4.2e-19	40.5
WP_154451586.1\|1474510_1474732_-	hypothetical protein	NA	NA	NA	NA
WP_154451588.1\|1474728_1474989_-	hypothetical protein	NA	NA	NA	NA
WP_154451590.1\|1474988_1475690_-	DUF1018 domain-containing protein	A0A219VHC6	Ochrobactrum_phage	7.1e-19	42.7
WP_154451592.1\|1475686_1475881_-	hypothetical protein	NA	NA	NA	NA
WP_154451594.1\|1475877_1476075_-	hypothetical protein	NA	NA	NA	NA
WP_154451596.1\|1476071_1476605_-	host-nuclease inhibitor protein Gam	L7P7S4	Pseudomonas_phage	5.9e-34	43.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044330

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP044328

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection