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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP021874 Desulfosarcina alkanivorans strain PL12 5 crisprs RT,cas3,DEDDh,DinG,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,csa3,Cas9_archaeal,PrimPol 2 5 14 0

Results visualization

1. NZ_AP021874
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP021874_1 1419462-1419611 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP021874_2 1784120-1785856 TypeI I-C
26 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP021874_4 4765855-4766309 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP021874_3 4765279-4765734 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP021874_5 5452072-5452703 Orphan NA
8 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_AP021874_4 4.2|4765950|49|NZ_AP021874|CRISPRCasFinder 4765950-4765998 49 NZ_AP021874.1 4765806-4765854 0 1.0
NZ_AP021874_4 4.7|4765981|40|NZ_AP021874|PILER-CR 4765981-4766020 40 NZ_AP021874.1 4765805-4765844 0 1.0

1. spacer 4.2|4765950|49|NZ_AP021874|CRISPRCasFinder matches to position: 4765806-4765854, mismatch: 0, identity: 1.0

ctgggcaacctgacccgcctcgagcgccttgaactgaatgccaaccagt	CRISPR spacer
ctgggcaacctgacccgcctcgagcgccttgaactgaatgccaaccagt	Protospacer
*************************************************

2. spacer 4.7|4765981|40|NZ_AP021874|PILER-CR matches to position: 4765805-4765844, mismatch: 0, identity: 1.0

gctgggcaacctgacccgcctcgagcgccttgaactgaat	CRISPR spacer
gctgggcaacctgacccgcctcgagcgccttgaactgaat	Protospacer
****************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_AP021874_4 4.8|4766070|24|NZ_AP021874|PILER-CR 4766070-4766093 24 NZ_LR536451 Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 2 1647-1670 3 0.875
NZ_AP021874_2 2.18|1785268|33|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR 1785268-1785300 33 NZ_CP043858 Arcobacter cibarius strain H743 plasmid pACIB, complete sequence 215678-215710 7 0.788
NZ_AP021874_2 2.3|1784284|35|NZ_AP021874|CRISPRCasFinder,CRT 1784284-1784318 35 KF806588 Erwinia phage Ea9-2, complete genome 68521-68555 8 0.771
NZ_AP021874_2 2.18|1785268|33|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR 1785268-1785300 33 NZ_CP028890 Borrelia turcica IST7 plasmid lp34, complete sequence 18090-18122 8 0.758
NZ_AP021874_2 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR 1785791-1785824 34 NC_019388 Thermus oshimai JL-2 plasmid pTHEOS02, complete sequence 38281-38314 8 0.765
NZ_AP021874_2 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR 1785791-1785824 34 MH834615 Mycobacterium phage KandZ, complete genome 42662-42695 8 0.765
NZ_AP021874_2 2.3|1784284|35|NZ_AP021874|CRISPRCasFinder,CRT 1784284-1784318 35 HQ634191 Cyanophage Syn10 genomic sequence 12395-12429 9 0.743
NZ_AP021874_2 2.3|1784284|35|NZ_AP021874|CRISPRCasFinder,CRT 1784284-1784318 35 DQ149023 Synechococcus cyanophage syn9, complete genome 137624-137658 9 0.743
NZ_AP021874_2 2.3|1784284|35|NZ_AP021874|CRISPRCasFinder,CRT 1784284-1784318 35 NC_008296 Synechococcus phage syn9, complete genome 137624-137658 9 0.743
NZ_AP021874_2 2.3|1784284|35|NZ_AP021874|CRISPRCasFinder,CRT 1784284-1784318 35 NZ_CP040642 Agrobacterium sp. T29 plasmid unnamed2, complete sequence 447754-447788 9 0.743
NZ_AP021874_2 2.9|1784679|34|NZ_AP021874|CRISPRCasFinder,CRT 1784679-1784712 34 NZ_CP006370 Aureimonas sp. AU20 plasmid pAU20c, complete sequence 111084-111117 9 0.735
NZ_AP021874_2 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR 1785791-1785824 34 MN284907 Gordonia phage Fireball, complete genome 36891-36924 9 0.735
NZ_AP021874_2 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR 1785791-1785824 34 MT639651 Gordonia phage Portcullis, complete genome 36166-36199 9 0.735
NZ_AP021874_2 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR 1785791-1785824 34 MH669015 Gordonia phage TillyBobJoe, complete genome 36561-36594 9 0.735
NZ_AP021874_2 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR 1785791-1785824 34 MK814761 Gordonia phage SmokingBunny, complete genome 36757-36790 9 0.735
NZ_AP021874_2 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR 1785791-1785824 34 MK305889 Gordonia phage Mutzi, complete genome 37626-37659 9 0.735
NZ_AP021874_2 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR 1785791-1785824 34 MN010760 Gordonia phage Nubi, complete genome 36771-36804 9 0.735
NZ_AP021874_2 2.3|1784284|35|NZ_AP021874|CRISPRCasFinder,CRT 1784284-1784318 35 NZ_CP050315 Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence 172612-172646 11 0.686
NZ_AP021874_2 2.9|1784679|34|NZ_AP021874|CRISPRCasFinder,CRT 1784679-1784712 34 NC_011281 Klebsiella variicola strain 342 plasmid pKP91, complete sequence 53404-53437 11 0.676
NZ_AP021874_2 2.9|1784679|34|NZ_AP021874|CRISPRCasFinder,CRT 1784679-1784712 34 NZ_LT985234 Escherichia coli strain 557 plasmid RCS32TR557_p, complete sequence 19384-19417 11 0.676
NZ_AP021874_2 2.9|1784679|34|NZ_AP021874|CRISPRCasFinder,CRT 1784679-1784712 34 NZ_CP032357 Klebsiella variicola strain 15WZ-82 plasmid p15WZ-82_res, complete sequence 85875-85908 11 0.676
NZ_AP021874_2 2.9|1784679|34|NZ_AP021874|CRISPRCasFinder,CRT 1784679-1784712 34 NZ_CP044049 Klebsiella variicola strain FDAARGOS_627 plasmid unnamed1, complete sequence 117302-117335 11 0.676

1. spacer 4.8|4766070|24|NZ_AP021874|PILER-CR matches to NZ_LR536451 (Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 2) position: , mismatch: 3, identity: 0.875

gcctgcactatctggaactttcat	CRISPR spacer
gcctgccctatctggaacattcac	Protospacer
****** *********** ****.

2. spacer 2.18|1785268|33|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043858 (Arcobacter cibarius strain H743 plasmid pACIB, complete sequence) position: , mismatch: 7, identity: 0.788

aaaatcgttttttaaataaaga----ggtttaaaatg	CRISPR spacer
caaatctttttttaaataaagagtttgatttaa----	Protospacer
 ***** ***************    *.*****    

3. spacer 2.3|1784284|35|NZ_AP021874|CRISPRCasFinder,CRT matches to KF806588 (Erwinia phage Ea9-2, complete genome) position: , mismatch: 8, identity: 0.771

ctgcctatgatgccgatggcaatcctatctataaa	CRISPR spacer
ttgcctatgatggcaatggcaatcctttggatcag	Protospacer
.*********** *.*********** *  ** *.

4. spacer 2.18|1785268|33|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028890 (Borrelia turcica IST7 plasmid lp34, complete sequence) position: , mismatch: 8, identity: 0.758

aaaatcgttttttaaataaagaggtttaaaatg	CRISPR spacer
atataagttatttaaaaaaagaggtttaaaaaa	Protospacer
* *   *** ****** ************** .

5. spacer 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR matches to NC_019388 (Thermus oshimai JL-2 plasmid pTHEOS02, complete sequence) position: , mismatch: 8, identity: 0.765

tgggccaccccgccgggtggggtggataccagcg-	CRISPR spacer
tgggccaccccgccagggggggtgagc-ccggagc	Protospacer
**************.** ******... **.* * 

6. spacer 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR matches to MH834615 (Mycobacterium phage KandZ, complete genome) position: , mismatch: 8, identity: 0.765

tgggccaccccgccgggtggggtggataccagcg	CRISPR spacer
tcagccaccccgaggggtggggtggatcagaacg	Protospacer
* .*********  *************   *.**

7. spacer 2.3|1784284|35|NZ_AP021874|CRISPRCasFinder,CRT matches to HQ634191 (Cyanophage Syn10 genomic sequence) position: , mismatch: 9, identity: 0.743

ctgcctatgatgccgatggcaatcctatctataaa	CRISPR spacer
gtgcctttgatgccgatggcaatccaattggagat	Protospacer
 ***** ****************** **. . .* 

8. spacer 2.3|1784284|35|NZ_AP021874|CRISPRCasFinder,CRT matches to DQ149023 (Synechococcus cyanophage syn9, complete genome) position: , mismatch: 9, identity: 0.743

ctgcctatgatgccgatggcaatcctatctataaa	CRISPR spacer
gtgcctttgatgccgatggcaatccaattggagat	Protospacer
 ***** ****************** **. . .* 

9. spacer 2.3|1784284|35|NZ_AP021874|CRISPRCasFinder,CRT matches to NC_008296 (Synechococcus phage syn9, complete genome) position: , mismatch: 9, identity: 0.743

ctgcctatgatgccgatggcaatcctatctataaa	CRISPR spacer
gtgcctttgatgccgatggcaatccaattggagat	Protospacer
 ***** ****************** **. . .* 

10. spacer 2.3|1784284|35|NZ_AP021874|CRISPRCasFinder,CRT matches to NZ_CP040642 (Agrobacterium sp. T29 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ctgcctatgatgccgatggcaatcctatctataaa	CRISPR spacer
cggtctatgatgccgatggcaatccggtcttgtgc	Protospacer
* *.********************* .***   . 

11. spacer 2.9|1784679|34|NZ_AP021874|CRISPRCasFinder,CRT matches to NZ_CP006370 (Aureimonas sp. AU20 plasmid pAU20c, complete sequence) position: , mismatch: 9, identity: 0.735

gcgttacccgcacgccggcgtcgcgcaatcgctt	CRISPR spacer
ggcgcagcggcacgccggcctcgcgcaaccgctc	Protospacer
*   .* * ********** ********.****.

12. spacer 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR matches to MN284907 (Gordonia phage Fireball, complete genome) position: , mismatch: 9, identity: 0.735

tgggccaccccgccgggtggggtggataccagcg----	CRISPR spacer
tgggcgaccccgcagggtggggtg----tcgacgtcct	Protospacer
***** ******* **********    .*..**    

13. spacer 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR matches to MT639651 (Gordonia phage Portcullis, complete genome) position: , mismatch: 9, identity: 0.735

tgggccaccccgccgggtggggtggataccagcg----	CRISPR spacer
tgggcgaccccgcagggtggggtg----tcgacgtcct	Protospacer
***** ******* **********    .*..**    

14. spacer 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR matches to MH669015 (Gordonia phage TillyBobJoe, complete genome) position: , mismatch: 9, identity: 0.735

tgggccaccccgccgggtggggtggataccagcg----	CRISPR spacer
tgggcgaccccgcagggtggggtg----tcgacgtcct	Protospacer
***** ******* **********    .*..**    

15. spacer 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR matches to MK814761 (Gordonia phage SmokingBunny, complete genome) position: , mismatch: 9, identity: 0.735

tgggccaccccgccgggtggggtggataccagcg----	CRISPR spacer
tgggcgaccccgcagggtggggtg----tcgacgtcct	Protospacer
***** ******* **********    .*..**    

16. spacer 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR matches to MK305889 (Gordonia phage Mutzi, complete genome) position: , mismatch: 9, identity: 0.735

tgggccaccccgccgggtggggtggataccagcg----	CRISPR spacer
tgggcgaccccgcagggtggggtg----tcgacgtcct	Protospacer
***** ******* **********    .*..**    

17. spacer 2.26|1785791|34|NZ_AP021874|CRISPRCasFinder,CRT,PILER-CR matches to MN010760 (Gordonia phage Nubi, complete genome) position: , mismatch: 9, identity: 0.735

tgggccaccccgccgggtggggtggataccagcg----	CRISPR spacer
tgggcgaccccgcagggtggggtg----tcgacgtcct	Protospacer
***** ******* **********    .*..**    

18. spacer 2.3|1784284|35|NZ_AP021874|CRISPRCasFinder,CRT matches to NZ_CP050315 (Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence) position: , mismatch: 11, identity: 0.686

ctgcctatgatgccgatggcaatcctatctataaa	CRISPR spacer
gcagtaacgatgccaatggcactcctatctatatt	Protospacer
 .. . *.******.****** ***********  

19. spacer 2.9|1784679|34|NZ_AP021874|CRISPRCasFinder,CRT matches to NC_011281 (Klebsiella variicola strain 342 plasmid pKP91, complete sequence) position: , mismatch: 11, identity: 0.676

gcgttacccgcacgccggcgtcgcgcaatcgctt	CRISPR spacer
cgtttacccgcacgccggcttcacgcaggatttc	Protospacer
   **************** **.****.   .*.

20. spacer 2.9|1784679|34|NZ_AP021874|CRISPRCasFinder,CRT matches to NZ_LT985234 (Escherichia coli strain 557 plasmid RCS32TR557_p, complete sequence) position: , mismatch: 11, identity: 0.676

gcgttacccgcacgccggcgtcgcgcaatcgctt	CRISPR spacer
cgtttacccgcacgccggcttcacgcaggatttc	Protospacer
   **************** **.****.   .*.

21. spacer 2.9|1784679|34|NZ_AP021874|CRISPRCasFinder,CRT matches to NZ_CP032357 (Klebsiella variicola strain 15WZ-82 plasmid p15WZ-82_res, complete sequence) position: , mismatch: 11, identity: 0.676

gcgttacccgcacgccggcgtcgcgcaatcgctt	CRISPR spacer
cgtttacccgcacgccggcttcacgcaggatttc	Protospacer
   **************** **.****.   .*.

22. spacer 2.9|1784679|34|NZ_AP021874|CRISPRCasFinder,CRT matches to NZ_CP044049 (Klebsiella variicola strain FDAARGOS_627 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

gcgttacccgcacgccggcgtcgcgcaatcgctt	CRISPR spacer
cgtttacccgcacgccggcttcacgcaggatttc	Protospacer
   **************** **.****.   .*.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 231628 : 336761 91 Acidithiobacillus_phage(20.83%) tail,plate,capsid,integrase,transposase attL 227342:227356|attR 318933:318949
DBSCAN-SWA_2 352351 : 402391 54 uncultured_Mediterranean_phage(23.08%) tail,plate,portal,capsid,integrase,transposase attL 386168:386185|attR 403405:403422
DBSCAN-SWA_3 427658 : 438436 6 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_4 550418 : 602441 41 Moraxella_phage(33.33%) tRNA,transposase,integrase attL 559912:559927|attR 595093:595108
DBSCAN-SWA_5 1032297 : 1103128 56 Bacillus_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_6 1120811 : 1129735 8 Sulfolobus_monocaudavirus(100.0%) integrase,transposase attL 1111584:1111598|attR 1121314:1121328
DBSCAN-SWA_7 2055421 : 2122606 58 uncultured_Mediterranean_phage(20.0%) integrase,protease,transposase attL 2064711:2064757|attR 2113716:2113762
DBSCAN-SWA_8 2765735 : 2823382 58 Anomala_cuprea_entomopoxvirus(14.29%) tRNA,integrase,transposase,holin,protease attL 2814603:2814620|attR 2821611:2821628
DBSCAN-SWA_9 3384139 : 3393707 11 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_10 4170324 : 4226268 46 Pike_perch_iridovirus(33.33%) transposase NA
DBSCAN-SWA_11 5666894 : 5676403 9 Virus_Rctr41k(50.0%) integrase,protease attL 5659340:5659355|attR 5672455:5672470
DBSCAN-SWA_12 6351438 : 6412480 47 Ostreococcus_tauri_virus(10.0%) tRNA,protease,transposase NA
DBSCAN-SWA_13 6786311 : 6853216 43 Cronobacter_phage(10.0%) tRNA,transposase,integrase attL 6839045:6839104|attR 6846616:6847906
DBSCAN-SWA_14 6861899 : 6924064 43 Cyanophage(33.33%) integrase,transposase attL 6891263:6891322|attR 6922080:6922173
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage