CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046105	Arthrobacter sp. AQ5-05 chromosome, complete genome	1 crisprs	csa3,PrimPol,cas3,DinG,WYL,RT,DEDDh	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046105_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046105_1

2709339-2709411

Orphan

Consensus_repeat	Method
GCGGGGGCCGTTGTGGTGATTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046105_1

>merge|NZ_CP046105|1|2709339-2709411|CRISPRCasFinder
GCGGGGGCCGTTGTGGTGATTCGCCACCGCTATGAATCGGTTCCGCAACAGAGGGGGCCGTTGTGGTGATTCG

>NZ_CP046105|1|1|2709339-2709411|CRISPRCasFinder
GCGGGGGCCGTTGTGGTGATTCG	CCACCGCTATGAATCGGTTCCGCAACA
GAGGGGGCCGTTGTGGTGATTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046105.1\|WP_154605652.1\|2697745_2699500_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274954
NZ_CP046105.1\|WP_154606533.1\|2715979_2717704_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|366045
NZ_CP046105.1\|WP_062007022.1\|2713089_2713809_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP046105.1\|WP_154605654.1\|2701681_2702716_-\|LytR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367673
NZ_CP046105.1\|WP_154605655.1\|2709586_2710552_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379128
NZ_CP046105.1\|WP_062007019.1\|2705871_2706909_-\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP046105.1\|WP_062007020.1\|2707791_2709129_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP046105.1\|WP_154605653.1\|2699496_2700738_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340825
NZ_CP046105.1\|WP_062004918.1\|2710788_2711388_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP046105.1\|WP_062009600.1\|2706905_2707709_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP046105.1\|WP_154606534.1\|2718234_2718924_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|372595
NZ_CP046105.1\|WP_154605656.1\|2713848_2714379_+\|DUF1697-domain-containing-protein	unknown	unknown	gnl\|CDD\|377954
NZ_CP046105.1\|WP_154606532.1\|2704731_2705823_-\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
NZ_CP046105.1\|WP_154605658.1\|2719037_2720537_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP046105.1\|WP_062007016.1\|2702866_2703355_+\|DUF3515-family-protein	unknown	unknown	gnl\|CDD\|378794
NZ_CP046105.1\|WP_154605651.1\|2696858_2697749_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP046105.1\|WP_062009602.1\|2711400_2712894_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP046105.1\|WP_062007017.1\|2703371_2704508_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225443
NZ_CP046105.1\|WP_154605657.1\|2714375_2715983_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|206743
NZ_CP046105.1\|WP_062007026.1\|2720820_2722992_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224428

Protein	Function_ID	Function_description	E-value
NZ_CP046105.1\|WP_154605652.1\|2697745_2699500_-\|glycosyltransferase	gnl\|CDD\|274954	TIGR04063, Glycosyl_transferase_group_1, PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family. PEP-CTERM/exosortase is a protein-sorting system associated with exopolysaccharide production. Members of this protein family are group 1 glycosyltransferases (see pfam00534) in which the overwhelming majority occur in species with the EpsH1 form of exosortase (see TIGR03109), and usually co-clustered with the exosortase. A typical member is Daro_2409 from Dechloromonas aromatica RCB.	7.41999e-81
NZ_CP046105.1\|WP_154606533.1\|2715979_2717704_-\|ABC-transporter	gnl\|CDD\|366045	pfam00350, Dynamin_N, Dynamin family.	1.10798e-10
NZ_CP046105.1\|WP_062007022.1\|2713089_2713809_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	7.38451e-45
NZ_CP046105.1\|WP_154605654.1\|2701681_2702716_-\|LytR-family-transcriptional-regulator	gnl\|CDD\|367673	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain.	1.57204e-57
NZ_CP046105.1\|WP_154605655.1\|2709586_2710552_+\|hypothetical-protein	gnl\|CDD\|379128	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin. AbiEi_4 is the cognate antitoxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	0.00988925
NZ_CP046105.1\|WP_062007019.1\|2705871_2706909_-\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	9.78659e-150
NZ_CP046105.1\|WP_062007020.1\|2707791_2709129_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_CP046105.1\|WP_154605653.1\|2699496_2700738_-\|glycosyltransferase	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	5.4039e-57
NZ_CP046105.1\|WP_062004918.1\|2710788_2711388_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	1.16408e-116
NZ_CP046105.1\|WP_062009600.1\|2706905_2707709_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.63427e-45
NZ_CP046105.1\|WP_154606534.1\|2718234_2718924_-\|HAD-IA-family-hydrolase	gnl\|CDD\|372595	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.	1.61894e-19
NZ_CP046105.1\|WP_154605656.1\|2713848_2714379_+\|DUF1697-domain-containing-protein	gnl\|CDD\|377954	pfam08002, DUF1697, Protein of unknown function (DUF1697). This family contains many hypothetical bacterial proteins.	4.22647e-39
NZ_CP046105.1\|WP_154606532.1\|2704731_2705823_-\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	6.25448e-159
NZ_CP046105.1\|WP_154605658.1\|2719037_2720537_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP046105.1\|WP_062007016.1\|2702866_2703355_+\|DUF3515-family-protein	gnl\|CDD\|378794	pfam12028, DUF3515, Protein of unknown function (DUF3515). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 166 to 214 amino acids in length. This protein has a conserved RCG sequence motif.	2.67204e-11
NZ_CP046105.1\|WP_154605651.1\|2696858_2697749_-\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.13116e-29
NZ_CP046105.1\|WP_062009602.1\|2711400_2712894_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP046105.1\|WP_062007017.1\|2703371_2704508_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225443	COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis].	2.70181e-22
NZ_CP046105.1\|WP_154605657.1\|2714375_2715983_-\|ABC-transporter	gnl\|CDD\|206743	cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain.	5.54015e-30
NZ_CP046105.1\|WP_062007026.1\|2720820_2722992_+\|hypothetical-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	6.13585e-18

>NZ_CP046105.1|WP_062007020.1|2707791_2709129_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MSRILTVRGGVPLKGRIQVRGAKNLVPKAMVAALLGNAPSTLRNVPEIKDVEVVTSLLQLHGVTVVKDPVTGDLTLDPANAKTASSSEINTHAGDSRIPILLCGPLIHSIGHAFIPDLGGCKIGDRPIDYHLEVLRKFGAVVDKTGGGILISAPHGLKGTKISLPYPSVGATEQVLLSATRAEGITELSGAATEPEIIDLIAILQKMGAIISVQTDRTIRIEGVNELSGYVHTALPDRNESASWASAALVTGGDIYVEGASQRDMMTFVNTFRKIGGGMDIHDDGIRFYHKGGDLKPLVLETDVHPGFMTDWQQPLVVALTQAEGVSIVHETVYENRFGFTNALTRMGANIQLHRECLGSVPCRFGQRNFIHSAVISGSTPLTGTTIDVPDLRGGFSHMIAALAAQGTSTVTGIDIISRGYEKFTAKLDGLGADFDVHESSKVLR
>NZ_CP046105.1|WP_062009600.1|2706905_2707709_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MSLRTWMVFAFVAGVARTAITLLMGKEWYGLDRLPVDEGFIVVPNHCTEIDPIVVGHLLYNQNVMPHFLAKDGLFKTPILGPILRGAQQIPVERSGAGAGTSLSFAQKVLDGGGAVVVYPEGTLTRDPDLWPMKGRTGAARLALGTGVKVIPVVHWGAQEVFPRYAKGFKIFPRKKVKVVVGDPVDLSAFAGHAADKATLEAMTDVIMVAITAMLEELRGEKAPAQRWDPAAHHQSTHGRFEERGSQGHKQDHQKNDVGPTETGDPQ
>NZ_CP046105.1|WP_062007019.1|2705871_2706909_-|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase
MSYVDGIAPVKIAVLGAGSWGTTFAKILGDAAAGTDRKIVVWGRRQEVVDQINIHHRNPRYLSTTELPANIGASTDAVEVLRDAELVVLAVPAQTLREQLRGWAGHLAKDVVVVSLMKGLELGTDQRMSQVIEEELGLTPDRVVVISGPNLAMEIARQEPTASVVACADENTAKWVASVSTPPYFRPYTVDDVVGVEIGGIVKNVIALCVGICEGQMVGDNTKASVITRGLAETTRLALALGGKAETMAGLAGLGDLVATCSSSLSRNHTAGRMLGEGLTLDEVNNRMTQTAEGIKSGRAVSDLAAKMGVDMPITNAVVGVLEGKLTVDELGPLLLARQLKSEGD
>NZ_CP046105.1|WP_154606532.1|2704731_2705823_-|D-alanine--D-alanine-ligase
MLFGGRSSEHAVSCVTAAGVLGAIDRGKYDVVAIGIAKNGQWVLAGDEVSGWSLAGGALPEVKAGGQSVSLAHLGGGHQLVVQEAAQVPQELGVVDVVFPLLHGPWGEDGTIQGMLELSDTRYVGAGVLASAIGMDKHFMKVVFEAAGLAVGPFIAVTDREWTVNPGRVRDRVSALGFPVFVKPARAGSSMGISKVDSLDGLDAAIAAAREHDLKLVIEAGIVGREIEIAVLEGRGSAAPRVSLPGEVTMMDGTHHAFYDFEAKYVHGDAVTLSCPADMPEVDLARIREQAALAFDAVGAEGLSRVDFFYTAAGDLIINEINTMPGFTPSSMYPQMWAASGLSYRDLIDELVQLALTRKVGLR
>NZ_CP046105.1|WP_062007017.1|2703371_2704508_-|class-I-SAM-dependent-methyltransferase
MATDSGAAPTISWIHDGEERSARWRSINGSPAPKNVVLVDDSLTADDAYRLAAQGKAMLWHGDYHNARQLLSAMARRTPAGKKRDGEDVADAFYRYRQARSQRARILGLLLVPLEPGPGVALRRAPDISQAWLGAAGEVHGPEVTPLQDVLGAIGAYEWRRNGLFVDVLDAKIHPHYGTFAPIRSEYLELVAQAPLPSTDLAFDIGTGTGVLAAILAKRGVQKVIATDSEPRAIACAQENIASLGLAGQIEPALTDMFPDGRAPIVVCNPPWLPGTPHTLLDNAVYDPKSRMLKAFLAGLPGHLEPGGEGWLIISDLAEHLGLRSREELLDWIEAAGLVVLDKRDTPARHPRSMDRSDPFFDARSREVTSLWTLGLKS
>NZ_CP046105.1|WP_062007016.1|2702866_2703355_+|DUF3515-family-protein
MRLKSLSGRIAAPLAVCALVLLTGCAPSVEVSAAEDSNNPACAPMMVALPDSLADAPKRTTSSQATAAWGDPSLLILRCGVPVPGPTTDSCVSVNGVDWVMKEGDPAWTLTTYGRNPATEIIFDPKKIASSSVLPELANAAAKIPATRACVGTEDLELPAGK
>NZ_CP046105.1|WP_154605654.1|2701681_2702716_-|LytR-family-transcriptional-regulator
MSEGDGAPGSARRRRNIGRGVLWSVLAVFVIAAVVSGLFVVNLAHNFDANVQRLPTTFPNDVSRPVKPTQGPASNAENILLLGSDSRSDDVDLAEQGLPSNQRSDTMMWVHIPADRKNIYMISIMRDTWVTIPGHGEAKINAAMAYGGVPLVVQTVEGMFNSRIDHVAVVDFEGFKAVTDVLGGVTVNVPIPFTSTHGNYTFPAGPQKMTGDQALGFVRERYAFVDGDYQRVKDQQIFLKAVLNTILTPSTLGNPITVTNLVKDVSPYVKVDQDLTAPTLAALALSLRGVRGSDVKSFTLPTLGTGTSADGQSIVLRDDAAISAIAAALANDSMGSYMAGAGLH
>NZ_CP046105.1|WP_154605653.1|2699496_2700738_-|glycosyltransferase
MRRSDAGKKKPLRIMLLIHSYWPEHSPPQRRWSTLIREFRAVSWDVDVVTPVAHFPLGRRELPIKLAGSPFRGQRGPHGERIKRVPFIPHSGNFHAARLLDQVFSAGMSIPAGLMWRKADVIIVTAPSLPILIAGYIVAKLRGVPLIVEMRDAWPDLARDARIVKGNVKSLIERVVEAIQMRADLVVAVTEGFAKTLRDRGVQNVATVSNGLDVDAVPSFAPPALDRDVLEALYLGNHGESQRLDVIIRASALVGDAMHLHMVGHGTKRPDLVKLAAELGAPVTFHPSLHGMDVRDRYESADTCIVSLRDDWKSFEATVPSKTYEVLAIGRHVTAIVRGEAARIVTDADGGDVVTWNAEAIASLWRELANDRKRLHAGTSGREWVEKHANYPVLASEYMTLISALVLEKSRVR
>NZ_CP046105.1|WP_154605652.1|2697745_2699500_-|glycosyltransferase
MSLVRNFRLAATTALNHVADDPVVLVLQLSRRLPASIVMPTAKGAARLLARSCSTPALLASYVAGDLAGLERKFQQAVTSVSKPNSARWAADVALGAGMPHWADKFLPAAESARRFPATLARRKWYDGNMSGAVAALTGQRGQMAKHHARLAGELLIFSGWRPTLSPVNMVPVSGRVLHFLTNSLPHTGSGYAQRSHSVLTAQQDAGSEILAVTRMGYPVQVGKVLAKSEDKVDGVTYRRLVPTHMAQTADARLQQEAEELLKVALEFRPEVLHTTTHFVNGLVVAAVAQALGIPWVYEVRGQLADTWASTRTYAAKSSERYLSFQAAEAAVMHEADAVVTLGEAMKEAIVAQGISGQKIVLAPNAVGGDFLKVPGTHAAARTKLGLDPELSYIGTVSSLVDYEGLDDLIDAFAILAPQFPDLRLLLVGSGTALPALRERAAKLDLTERVIFTGRVAREQTPLYHQSMDIFVVPRKDLGVTRAVTPLKPVEALASARPVVASSLPALGEIVIENLNGKLSPAGDPIGLAEVLANLLEDPQARHELGLKGRELILQTRTWAANALSYTDVYGQLWHEQEKGSLAS
>NZ_CP046105.1|WP_154605651.1|2696858_2697749_-|ABC-transporter-permease
MTAEQETLTAPAPASIDVHLDLGQLQRVGARPGFLDYLVQLWDFRQFIFYDAQARVQSGTRRDKLGSAWLILNPIFNGLTYFVIFGLLMGTGEGIPNFIGYLVVGIFMYQITSGAITSGARSIQQNRSLVQGFSFPRAALPIGANLRELLANVPLILAMLLIVLVIPPTETISWLWLLIVPVIALQFLFNLGVGLILARVISKVNDVTHLLPFALRALMYLSAIFFSYERFIDHPVILNIMEANPMFIIIDITRDCVLYNTVPSAHSWIVLSAWSLTLFIVGMFYFWKAEESYVRG
>NZ_CP046105.1|WP_154605655.1|2709586_2710552_+|hypothetical-protein
MTVFQVPPFITADSKYEDEYSARRLSRQTASGKLVRVRRGLYLPASVWESMKPWEQERMRIQAVDVLASRHPIFARESAALVMGLPLIHTPRQVQTVVAPGLRGGQSSKGVRRTGSVEGDPVPWTMFGLKVTPPAETARDLALQLPLSQSLPAMDKLMQREILPGSPHNVNLIFTADHVRASAALLPNGTQRRRVERVLEVADGLSQSAGESWSRAIMIQHGFPRPVLQNSYYDDRGLIGYPDFEWKELKILGEFDGFEKYSAQRFLKGKTPSQVVVEEKKREDRLRALGYKVVRWVWADLQDPQRLIGLLHAAGLPSRNV
>NZ_CP046105.1|WP_062004918.1|2710788_2711388_-|3-isopropylmalate-dehydratase-small-subunit
MDKFSTHTGIGVPLRQSNVDTDQIIPAVYLKRITRTGFEDALFSSWRKNPEFILNQEPYSAGSVLVAGADFGTGSSREHAVWALKDYGFKAVLSSRFADIFRGNSGKQGLVAAEVAQDDIELIWKVLENAPGTEVTVDLVAKMVTAGTVVAPFQIDDYTRWRILEGLDDIGLTLRDEPAITAFEATRPTYKPTTLPAKS
>NZ_CP046105.1|WP_062009602.1|2711400_2712894_-|3-isopropylmalate-dehydratase-large-subunit
MPTVSTTTARRTAKTLAEKVWRDHVVKQGEGDGDAAQPDLLYIDLHLIHEVTSPQAFEGLRLAGRPLRRPDLTIATEDHNTPTLDIFKPIADLTSRTQIQTLRNNCAEFGVRLHSLGDAEQGIVHVVGPQLGLTQPGMTVVCGDSHTSTHGAVGALAFGIGTSEVEHVMATQTLPLKPFKTMAINVEGTLRPGVTSKDVILAIIAQIGTGGGQGYVLEYRGSAIRALSMDARMTVCNMSIEAGARAGMIAPDEITFAYLKGRAHAPVGADWDDAVEYWKSLTTEDDAEFDAEVFLDANTLEPFVTWGTNPGQGVSLNDAVPFPEDFGDENAKAAAERALAYMDLEAGTPMKDIRVDTVFLGSCTNSRIEDLRAAADIIRGREKDPNIRMLVVPGSARVRLEAEAEGLDKVFVDFGAEWRFAGCSMCLGMNPDQLEPGERCASTSNRNFEGRQGKGGRTHLVSPVVAAATAVRGTLSSPSDLLPVVEPVETTSAQTVA
>NZ_CP046105.1|WP_062007022.1|2713089_2713809_+|IclR-family-transcriptional-regulator
MDNSSGVGVIDKAALVLDALEAGPTTLAQLVAATGLARPTVHRLALALVYHRLVSRDMQGRFVLGSRLVELASAAGEDRLIAAAGPVLLQLRDSTGESAQIFRRQGDSRVCVASAERPIGLRDTIPVGTQLTMKAGSAAQVLLAWEDHERLLEGLHNARFTPTVLAGVRRRGWGQSLGEREPGVASVSAPVRGPSGRVIAAVSISGPIERLTRQPGRLHAEIVCNASRILTEALRKSND
>NZ_CP046105.1|WP_154605656.1|2713848_2714379_+|DUF1697-domain-containing-protein
MTNCAVFLRGINVGGINIKMAELRLALAALPLENVKTLLASGNVVCSSDAPVAEVKALVEDCLREKFGYDAWVVVLDQPRLKSIIETCPYPGDDKATHSYVTLSSQPDMLDELEALGRDLPATELRRLSPEALAWLAPAGGTLESPFSKLSARARYKSTTTTRNLRTLLKCRDAMA
>NZ_CP046105.1|WP_154605657.1|2714375_2715983_-|ABC-transporter
MSRHREARTESSLAQKLAALNKARELGEGRLDDAALQEAYDVLERATSRRSLSAGHTVVGFFGATGSGKSTLFNAVVGAEVATVAVRRPTTSEPLAMVWELAGSGPLLDWLKVADRREGKAVPGLGDGCGLILLDLPDFDSVQFSHRETAQRLAGQVDVLVWVVDPQKYADAAIHHDFIRPFSAHGAVTIVVLNQVDTLAPHEVKPVLASLAGILDRDGLTHVPVLAVSALAGTGVSDLRTRLSAVVKAKAAQSARLAADVAVAARRLAEASGTGEAAGVHQQERRALAAGLAQAAHVEPVVAAVRASYRLEATKRTGWPPTRWISKFRKDPLRQLSLRREGDCAVNRTSLPQAGVAEQAQLDSAVRDFADAASAGACGPWRASIRAAARSNRQGLPDALDQAVASTDVKANARSWWWPVFSAIQWLALLAAVAGLLWLGVLAGLGYFQMPVPEAPKVEGWPVPTLLVIGGVVLGVFLALTSKFIAAADAARRASQARRRLRESIGAVCQTLVVEPVEAEIARHRAFQDALAAAS
>NZ_CP046105.1|WP_154606533.1|2715979_2717704_-|ABC-transporter
MALLEAVRAELERLQLPLELPGTQEARNTAKASLRQLEDYILPRYRSLEAPLLAVVGGSTGAGKSTLVNALVGHPVTRAGAIRPTTRQPILLHHPQDTDWFSSTRVLPSLARIRGERAPAGTAATEAGPTPDPAAMNSLALVADPAVPKGVALLDAPDVDSVSDDNRELAGQLLAAADLWLFVTTANRYADAVPWRLLLDAASRDILVAVILDRVPQGAQTEVSADLRSMLGRQGLTGAQLFVVPETALDELGMLPAEATAPIRAWLEGMAADVSGRADIARRTLNGTVRALSGKVELLALAALDQHESSLQLTDDVVAAFEDAATKISHATSDGSLLRGEVLARWQDFVGTGDFFRALESGIGRVRDRVGAFFRGQPPPAVQVEAAIETGLQAVIVAQAARAAEDADQRWRADPAGRALLSAQDLSGVTADFPATVAAEIRAWQSDVMALIRSEGAARRSQARWLSFGVNGLGVVLMIVVFSLTGGLTGAEVGIAGGTAVVGQKLLEAVFGEDAVRRLTHEARQSLEKRCAALLAGQQQRFLERIGPLSSGSSPAVERLEALAKRLATLGEGA
>NZ_CP046105.1|WP_154606534.1|2718234_2718924_-|HAD-IA-family-hydrolase
MQAAMEVAGRELLPANTAQDWDTFAAIYMADTHNYYDRYVAGEFSFAQQRGLRARVVFDHLGFSGFDDVAEQRWIADFEAAQPLSIKAFEDVVPILDTLDEAGIPYGCVSNNVHDYQRAKLDTAGLQRIEVLVGIDTLDAAKPAPQVFLEGCRQLGTHPAQTLYVGDNYMLDAVGSSQAGLRGVWLNRENVQAPSCEGEAVDALGGVQEIANLFELALLLALEPLNTRL
>NZ_CP046105.1|WP_154605658.1|2719037_2720537_-|glutamate--tRNA-ligase
MTIAAQIPTVTAETPVRVRFCPSPTGTPHVGLIRTALFNWAYARHTNGKMIFRIEDTDTKRDSEESYLQLLDAMKWLGIDWDEGVEVGGPHEPYRQSQRNDIYQDVIAKLVAGGHVYESFSSPEEVEARHKTAGRDVKLGYDNFDRDLSADQITAFKAEGRQPALRLRMPDADITFTDLVRGEITFKAGSVPDYALVRPNGAPLYTLVNPVDDALMGVTHVLRGEDLLSSTPRQVALYQALYAVGVAQYMPLFGHLPYVMGAGNKKLSKRDPESNLFLHRDRGFIPEGLLNYLSLLGWSLSADEDIFTVEQLVEHFDIHDVLGNPARFDVKKAEAINGTHVRMLGACDFRNRLVPYLQAEGVVGETLSAREEEILTESAPLVQERITLLGEAPQMLAFLFKRDDGVDVADDARKGLPENLTEVLDAALAALEPLEEWTAQSIQAALKTALVEGLGVKPRLAFGPVRTALSGRRISPPLFESMVILGKESSLTRLKTFRG
>NZ_CP046105.1|WP_062007026.1|2720820_2722992_+|hypothetical-protein
MSRRTVGAPLRSSTKNHYIAHALLSLLVLGLIMFFALTTTKIASGASQLHDGSKLTSAGADKLKQGAADLDAGAAALSKGAASAAVGATAAESGAGKLSTGATALSQGIQDKLAPGLFSANDGAQALTEGAAKTANDVRNKLAPGVYAAADGANQLAAGGTELNAGAATIADGVKNQLAPGVFAANAGAQELFAGSKALESGTATVAEGVATQLAPGIVAVDKGAGDAAAGANRLNAGAQQLKAGASAASAGAAALGAGASAANAGAQQVNAGSQGLAAGVGQLSAGLTPSANGADPQNLADGVNQLAAGAAQLAGHGSTPGVDATGVAALREGLSSLRAAALATPGIPLGALLDQLTALEAGAQQASQGSTQLVAGSQQLQGGFGVLGKKLNSTDPANPGLVAGANQLWAGAQQLAGGTMQLSAGLNGVPNDPANPGLVAGNMKLAEGATEVSTGTKQLAEGTTALYAGTRQLVVGVHGQPNDVSQPGLLSALKSIAAGSSALSAGTGKLSGGTSEIATGLRGTAGKPGLIDGAASLATGSSTLSAGTKKLSTGTQQLVFGMDGTPGDPERPGLLYATRNLESGTAKLSAGTQALNEGVAGTPAIAGSGLLEGSKTLAEGAGKLAEGSTTLAAGNAKLAAGASGLSTGASRMADGAQTLAVGNSQVADGTSELLTGVSAVTPAGAVAAPVPILAIIGALLVAIAMTIMLRRRAATRRAESAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

912262 : 920305

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154606440.1\|912262_912481_+	DUF3263 domain-containing protein	A0A0A7RXU7	Mycobacterium_phage	4.1e-10	56.1
WP_154605032.1\|912524_913136_+	LytR family transcriptional regulator	NA	NA	NA	NA
WP_062005040.1\|913457_915086_+	chaperonin GroEL	A0A219YK78	uncultured_virus	3.5e-146	54.7
WP_154605033.1\|915188_916181_+	DUF4440 domain-containing protein	V9SDF5	Tunisvirus	1.7e-18	39.9
WP_154605034.1\|916195_916489_-	WXG100 family type VII secretion target	NA	NA	NA	NA
WP_154605035.1\|916595_918140_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.5e-24	32.1
WP_062009198.1\|918145_918856_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.6e-34	38.2
WP_154605036.1\|918943_920305_-	sulfatase-like hydrolase/transferase	A0A2K9L1A5	Tupanvirus	5.8e-09	22.8

DBSCAN-SWA_2

2337449 : 2407063

Tupanvirus(26.67%)

protease,tRNA,integrase

attL 2368615:2368646|attR 2412737:2412768

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154605492.1\|2337449_2340722_-\|tRNA	isoleucine--tRNA ligase	A0A2K9L9X8	Tupanvirus	3.5e-153	33.7
WP_062006783.1\|2341056_2341812_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_062006784.1\|2341821_2342169_-	DUF488 family protein	NA	NA	NA	NA
WP_062006785.1\|2342303_2342813_-	MepB family protein	NA	NA	NA	NA
WP_154605493.1\|2342925_2345547_+\|tRNA	valine--tRNA ligase	A0A2K9KZB8	Tupanvirus	2.0e-162	38.7
WP_062006787.1\|2345830_2346085_+	hypothetical protein	NA	NA	NA	NA
WP_154605494.1\|2346095_2346983_+	FHA domain-containing protein	NA	NA	NA	NA
WP_154605495.1\|2347042_2348674_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_154605496.1\|2348857_2349481_-	disulfide bond formation protein DsbA	NA	NA	NA	NA
WP_062006791.1\|2349546_2350833_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	6.9e-137	59.0
WP_062006792.1\|2351016_2351691_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-38	44.3
WP_082357844.1\|2351724_2352345_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	5.6e-44	54.1
WP_082357845.1\|2352625_2354128_-	trigger factor	NA	NA	NA	NA
WP_154605497.1\|2354438_2355416_-	Fpg/Nei family DNA glycosylase	NA	NA	NA	NA
WP_062006795.1\|2355463_2355937_-	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_154605498.1\|2356008_2357001_-	hypothetical protein	NA	NA	NA	NA
WP_154606514.1\|2357244_2359794_+	aminopeptidase N	A0A2K9L1R3	Tupanvirus	1.3e-41	31.0
WP_154605499.1\|2360006_2360825_+	hypothetical protein	A0A160DD06	Gordonia_phage	3.1e-05	25.7
WP_154605500.1\|2360880_2361351_+	OsmC family peroxiredoxin	NA	NA	NA	NA
WP_154606515.1\|2361647_2362223_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_154606516.1\|2362348_2362867_+	globin	NA	NA	NA	NA
WP_154605501.1\|2362958_2363627_-	hypothetical protein	NA	NA	NA	NA
WP_154605502.1\|2363623_2364172_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_062006800.1\|2364287_2365196_+	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_154605503.1\|2365340_2367023_-	energy-dependent translational throttle protein EttA	A0A2K9L0W2	Tupanvirus	3.1e-44	29.5
WP_062009538.1\|2367086_2367356_-	hypothetical protein	NA	NA	NA	NA
WP_154605504.1\|2367620_2368295_-	single-stranded DNA-binding protein	A0A1J0MC80	Streptomyces_phage	7.1e-16	35.5
2368615:2368646	attL	NA	NA	NA	NA
WP_154605505.1\|2369399_2370833_+	ATP-binding protein	NA	NA	NA	NA
WP_154605506.1\|2370816_2373567_+	hypothetical protein	NA	NA	NA	NA
WP_154605507.1\|2373517_2374558_+	PD-(D/E)XK motif protein	NA	NA	NA	NA
WP_154605508.1\|2374550_2375243_+	DUF4357 domain-containing protein	NA	NA	NA	NA
WP_154605509.1\|2375365_2376991_-	DNA (cytosine-5-)-methyltransferase	A0A191SB20	Nostoc_phage	9.4e-14	27.4
WP_154605510.1\|2377539_2378562_+	DUF4192 family protein	NA	NA	NA	NA
WP_154605511.1\|2378612_2378780_+	NrdH-redoxin	Q3V5E2	Corynebacterium_phage	3.5e-09	50.0
WP_062008973.1\|2378922_2379549_-	hypothetical protein	NA	NA	NA	NA
WP_062008975.1\|2379988_2380561_-	hypothetical protein	NA	NA	NA	NA
WP_154605512.1\|2380557_2383011_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_154605513.1\|2383010_2384177_-\|integrase	tyrosine-type recombinase/integrase	A0A0A8WF08	Clostridium_phage	4.4e-05	26.3
WP_154605514.1\|2384634_2385183_+	hypothetical protein	NA	NA	NA	NA
WP_154605515.1\|2385179_2388758_+	relaxase domain-containing protein	NA	NA	NA	NA
WP_154605516.1\|2388785_2389367_+	hypothetical protein	NA	NA	NA	NA
WP_154605517.1\|2389810_2390800_+	hypothetical protein	NA	NA	NA	NA
WP_154605518.1\|2391549_2392158_-	hypothetical protein	NA	NA	NA	NA
WP_154605519.1\|2392426_2392927_-	single-stranded DNA-binding protein	A0A1D8ETH0	Propionibacterium_phage	1.2e-17	40.8
WP_154605520.1\|2392986_2394138_-	DUF1738 domain-containing protein	NA	NA	NA	NA
WP_154605521.1\|2394189_2394726_-	hypothetical protein	NA	NA	NA	NA
WP_154605522.1\|2394712_2396653_-	TraM recognition domain-containing protein	NA	NA	NA	NA
WP_154605523.1\|2397977_2399450_-	hypothetical protein	NA	NA	NA	NA
WP_154605524.1\|2399442_2400933_-	hypothetical protein	NA	NA	NA	NA
WP_154605525.1\|2400942_2401230_-	hypothetical protein	NA	NA	NA	NA
WP_154606517.1\|2401334_2401883_-	CHAP domain-containing protein	A0A0A8WF62	Clostridium_phage	1.8e-09	40.7
WP_154605526.1\|2402494_2403235_-	hypothetical protein	NA	NA	NA	NA
WP_154605527.1\|2403431_2404319_-	hypothetical protein	NA	NA	NA	NA
WP_154605528.1\|2404521_2404896_+	ArsR family transcriptional regulator	NA	NA	NA	NA
WP_154605529.1\|2405637_2405859_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_154605530.1\|2405938_2407063_+\|integrase	tyrosine-type recombinase/integrase	A0A222ZES9	Arthrobacter_phage	3.3e-74	42.4
2412737:2412768	attR	NA	NA	NA	NA

DBSCAN-SWA_3

3340492 : 3351107

uncultured_virus(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062007506.1\|3340492_3342007_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	3.8e-94	40.3
WP_154605988.1\|3342205_3344128_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	6.2e-65	30.3
WP_062007507.1\|3344537_3346145_-	chaperonin GroEL	A0A219YK78	uncultured_virus	7.0e-155	54.8
WP_038464523.1\|3346263_3346560_-	co-chaperone GroES	A0A221S4M3	uncultured_virus	6.2e-17	47.4
WP_062007508.1\|3346851_3347742_+	ABC transporter ATP-binding protein	A0A2R8FFL6	Cedratvirus	1.2e-15	32.6
WP_062007509.1\|3347738_3348551_+	ABC transporter permease	NA	NA	NA	NA
WP_154605990.1\|3348593_3349199_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.5e-09	24.6
WP_154605992.1\|3349195_3350212_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_154606576.1\|3350201_3351107_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	4.5e-66	42.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage