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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046126 Enterococcus casseliflavus strain EC291 plasmid unnamed3, complete sequence 0 crisprs csa3 0 0 0 0
NZ_CP046124 Enterococcus casseliflavus strain EC291 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP046125 Enterococcus casseliflavus strain EC291 plasmid unnamed2, complete sequence 0 crisprs RT 0 0 1 0
NZ_CP046123 Enterococcus casseliflavus strain EC291 chromosome, complete genome 2 crisprs csa3,WYL,RT,cas3,DinG,DEDDh,cas14j 0 1 12 0

Results visualization

1. NZ_CP046125
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7561 : 57088 55 Bacillus_phage(25.0%) protease,transposase,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP046123
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046123_1 989218-989302 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046123_2 3154636-3154776 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_CP012385 Enterococcus durans strain KLDS 6.0930 plasmid unnamed 1, complete sequence 115087-115111 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_LR135340 Enterococcus faecium isolate E7356 plasmid 2 61608-61632 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_CP012367 Enterococcus durans strain KLDS 6.0933 plasmid unnamed 1, complete sequence 146682-146706 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_LR135298 Enterococcus faecium isolate E7429 plasmid 2 167426-167450 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 MT074686 Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence 186269-186293 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_LR135279 Enterococcus faecium isolate E6975 plasmid 2 103666-103690 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_LR135198 Enterococcus faecium isolate E6055 plasmid 2 171062-171086 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_LR135182 Enterococcus faecium isolate E1774 plasmid 2 142461-142485 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_AP022823 Enterococcus saigonensis strain VE80 plasmid pVE80-1, complete sequence 53060-53084 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_LR135489 Enterococcus faecium isolate E8414 plasmid 2 177216-177240 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_LR135365 Enterococcus faecium isolate E8195 plasmid 2 154412-154436 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_LR135415 Enterococcus faecium isolate E8328 plasmid 2 187352-187376 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_LR135395 Enterococcus faecium isolate E8290 plasmid 2 187352-187376 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_LR135345 Enterococcus faecium isolate E8202 plasmid 2 136374-136398 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_LR135409 Enterococcus faecium isolate E8284 plasmid 2 187352-187376 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_LR135385 Enterococcus faecium isolate E7933 plasmid 2 185805-185829 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_CP040704 Enterococcus faecium strain HOU503 plasmid p1, complete sequence 15460-15484 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_CP044275 Enterococcus faecium strain V2937 plasmid pHVH-V2937-1, complete sequence 148556-148580 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_CP018066 Enterococcus faecium strain E1 plasmid pE1_230, complete sequence 126397-126421 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_AP019409 Enterococcus faecium strain SMVRE20 plasmid pSMVRE20L, complete sequence 129782-129806 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NC_020208 Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence 33029-33053 0 1.0
NZ_CP046123_1 1.1|989248|25|NZ_CP046123|CRISPRCasFinder 989248-989272 25 NZ_MG674581 Enterococcus faecium strain HL1 plasmid pHLSA, complete sequence 114355-114379 0 1.0

1. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_CP012385 (Enterococcus durans strain KLDS 6.0930 plasmid unnamed 1, complete sequence) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

2. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_LR135340 (Enterococcus faecium isolate E7356 plasmid 2) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

3. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_CP012367 (Enterococcus durans strain KLDS 6.0933 plasmid unnamed 1, complete sequence) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

4. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_LR135298 (Enterococcus faecium isolate E7429 plasmid 2) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

5. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to MT074686 (Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

6. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_LR135279 (Enterococcus faecium isolate E6975 plasmid 2) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

7. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_LR135198 (Enterococcus faecium isolate E6055 plasmid 2) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

8. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_LR135182 (Enterococcus faecium isolate E1774 plasmid 2) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

9. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_AP022823 (Enterococcus saigonensis strain VE80 plasmid pVE80-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

10. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_LR135489 (Enterococcus faecium isolate E8414 plasmid 2) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

11. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_LR135365 (Enterococcus faecium isolate E8195 plasmid 2) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

12. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_LR135415 (Enterococcus faecium isolate E8328 plasmid 2) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

13. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_LR135395 (Enterococcus faecium isolate E8290 plasmid 2) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

14. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_LR135345 (Enterococcus faecium isolate E8202 plasmid 2) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

15. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_LR135409 (Enterococcus faecium isolate E8284 plasmid 2) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

16. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_LR135385 (Enterococcus faecium isolate E7933 plasmid 2) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

17. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_CP040704 (Enterococcus faecium strain HOU503 plasmid p1, complete sequence) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

18. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_CP044275 (Enterococcus faecium strain V2937 plasmid pHVH-V2937-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

19. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_CP018066 (Enterococcus faecium strain E1 plasmid pE1_230, complete sequence) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

20. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_AP019409 (Enterococcus faecium strain SMVRE20 plasmid pSMVRE20L, complete sequence) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

21. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NC_020208 (Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

22. spacer 1.1|989248|25|NZ_CP046123|CRISPRCasFinder matches to NZ_MG674581 (Enterococcus faecium strain HL1 plasmid pHLSA, complete sequence) position: , mismatch: 0, identity: 1.0

ctaaactcgatacaaatccggaacg	CRISPR spacer
ctaaactcgatacaaatccggaacg	Protospacer
*************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 753531 : 762258 9 uncultured_virus(28.57%) protease,integrase attL 757876:757895|attR 765209:765228
DBSCAN-SWA_2 964746 : 991264 25 Streptococcus_phage(40.0%) transposase NA
DBSCAN-SWA_3 994384 : 1051792 46 Streptococcus_phage(31.25%) tRNA,transposase NA
DBSCAN-SWA_4 1230285 : 1238875 9 Escherichia_phage(37.5%) NA NA
DBSCAN-SWA_5 1349108 : 1391999 62 Enterococcus_phage(28.57%) terminase,integrase,coat,tail,head,portal attL 1341811:1341825|attR 1359900:1359914
DBSCAN-SWA_6 1741341 : 1754245 14 Streptococcus_phage(88.89%) NA NA
DBSCAN-SWA_7 2184729 : 2259013 83 Enterococcus_phage(40.48%) tRNA,transposase,terminase,holin,tail,portal NA
DBSCAN-SWA_8 2409832 : 2423740 12 Escherichia_phage(25.0%) tRNA NA
DBSCAN-SWA_9 2535467 : 2602632 57 Lactococcus_phage(44.83%) transposase,holin,tail,capsid,terminase,portal NA
DBSCAN-SWA_10 3031614 : 3038636 10 Streptococcus_phage(85.71%) NA NA
DBSCAN-SWA_11 3042738 : 3054636 9 Streptococcus_phage(88.89%) NA NA
DBSCAN-SWA_12 3412066 : 3422971 11 Staphylococcus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage