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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046115 Klebsiella oxytoca strain P620 chromosome, complete genome 6 crisprs DEDDh,WYL,DinG,cas3,csa3 0 8 2 0

Results visualization

1. NZ_CP046115
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046115_1 1924664-1924871 Orphan I-F
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046115_2 3614350-3614744 Orphan I-E
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046115_3 3903619-3903692 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046115_4 4281182-4281576 Orphan I-E
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046115_5 4403564-4403691 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046115_6 4433421-4433527 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046115_4 4.4|4281394|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281394-4281425 32 MK416015 Klebsiella phage ST16-OXA48phi5.4, complete genome 33387-33418 1 0.969
NZ_CP046115_2 2.1|3614379|32|NZ_CP046115|CRISPRCasFinder,CRT 3614379-3614410 32 MK416008 Klebsiella phage ST405-OXA48phi1.3, complete genome 4879-4910 4 0.875
NZ_CP046115_2 2.3|3614501|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 3614501-3614532 32 NZ_CP026278 Klebsiella oxytoca strain KONIH2 plasmid pKOR-0e8e, complete sequence 40937-40968 4 0.875
NZ_CP046115_2 2.3|3614501|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 3614501-3614532 32 MK714353 Klebsiella phage ST13-OXA48phi12.5, complete genome 38449-38480 4 0.875
NZ_CP046115_2 2.3|3614501|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 3614501-3614532 32 KY271395 Klebsiella phage 2b LV-2017, complete genome 41071-41102 4 0.875
NZ_CP046115_2 2.3|3614501|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 3614501-3614532 32 MK448233 Klebsiella phage ST11-VIM1phi8.1, complete genome 39845-39876 4 0.875
NZ_CP046115_2 2.3|3614501|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 3614501-3614532 32 KY271396 Klebsiella phage 2 LV-2017, complete genome 3230-3261 4 0.875
NZ_CP046115_2 2.3|3614501|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 3614501-3614532 32 MK448235 Klebsiella phage ST512-KPC3phi13.1, complete genome 39845-39876 4 0.875
NZ_CP046115_2 2.3|3614501|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 3614501-3614532 32 MK448231 Klebsiella phage ST101-KPC2phi6.1, complete genome 42308-42339 4 0.875
NZ_CP046115_4 4.4|4281394|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281394-4281425 32 NZ_CP035707 Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt13, complete sequence 37958-37989 5 0.844
NZ_CP046115_2 2.4|3614562|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 3614562-3614593 32 NZ_CP030828 Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence 224585-224616 6 0.812
NZ_CP046115_4 4.4|4281394|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281394-4281425 32 NZ_CP021031 Rhizobium sp. NXC14 plasmid pRspNXC14a, complete sequence 327334-327365 6 0.812
NZ_CP046115_4 4.4|4281394|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281394-4281425 32 NZ_CP023068 Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence 1467644-1467675 6 0.812
NZ_CP046115_4 4.4|4281394|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281394-4281425 32 CP006879 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence 370259-370290 6 0.812
NZ_CP046115_1 1.5|1924812|32|NZ_CP046115|CRISPRCasFinder 1924812-1924843 32 NZ_CP006991 Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence 35452-35483 7 0.781
NZ_CP046115_1 1.2|1924753|31|NZ_CP046115|PILER-CR 1924753-1924783 31 NC_015314 Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence 96291-96321 9 0.71
NZ_CP046115_1 1.2|1924753|31|NZ_CP046115|PILER-CR 1924753-1924783 31 NZ_CP030220 Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence 4237-4267 9 0.71
NZ_CP046115_1 1.4|1924752|32|NZ_CP046115|CRISPRCasFinder 1924752-1924783 32 NZ_CP030220 Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence 4236-4267 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013502 Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S23-C10 24514-24545 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013783 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S24-C161, *** SEQUENCING IN PROGRESS *** 8424-8455 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013505 Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S38-C26 24731-24762 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013504 Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S34-C29 23473-23504 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP014448 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S35-C81, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces 15229-15260 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013794 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S41-C142, *** SEQUENCING IN PROGRESS *** 9197-9228 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013796 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S44-C315, *** SEQUENCING IN PROGRESS *** 2438-2469 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 GU943046 Uncultured phage MedDCM-OCT-S12-C496 genomic sequence 3690-3721 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013795 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S43-C156, *** SEQUENCING IN PROGRESS *** 7164-7195 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013506 Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S42-C35 10886-10917 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013786 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S31-C108, *** SEQUENCING IN PROGRESS *** 3357-3388 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013503 Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S29-C22 34098-34129 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 GU943055 Uncultured phage MedDCM-OCT-S04-C26 genomic sequence 22931-22962 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013785 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S30-C161, *** SEQUENCING IN PROGRESS *** 8986-9017 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013789 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S33-C266, *** SEQUENCING IN PROGRESS *** 2438-2469 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013791 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S36-C101, *** SEQUENCING IN PROGRESS *** 9988-10019 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013793 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S39-C151, *** SEQUENCING IN PROGRESS *** 5090-5121 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013784 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S27-C105, *** SEQUENCING IN PROGRESS *** 12236-12267 9 0.719
NZ_CP046115_4 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR 4281516-4281547 32 AP013787 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S32-C104, *** SEQUENCING IN PROGRESS *** 9988-10019 9 0.719
NZ_CP046115_1 1.4|1924752|32|NZ_CP046115|CRISPRCasFinder 1924752-1924783 32 NC_015314 Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence 96290-96321 10 0.688
NZ_CP046115_1 1.5|1924812|32|NZ_CP046115|CRISPRCasFinder 1924812-1924843 32 NZ_CP021128 Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence 37021-37052 10 0.688
NZ_CP046115_1 1.5|1924812|32|NZ_CP046115|CRISPRCasFinder 1924812-1924843 32 CP007645 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence 37001-37032 10 0.688

1. spacer 4.4|4281394|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to MK416015 (Klebsiella phage ST16-OXA48phi5.4, complete genome) position: , mismatch: 1, identity: 0.969

gcgcgccagcgtgccggtcatagctgcggctt	CRISPR spacer
gcgcgccagcgtgccggtcatcgctgcggctt	Protospacer
********************* **********

2. spacer 2.1|3614379|32|NZ_CP046115|CRISPRCasFinder,CRT matches to MK416008 (Klebsiella phage ST405-OXA48phi1.3, complete genome) position: , mismatch: 4, identity: 0.875

gtcttcagaccaggcgagcatatccagaaacg	CRISPR spacer
accttcagaccaagcgagcatgtccagaaacg	Protospacer
..**********.********.**********

3. spacer 2.3|3614501|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026278 (Klebsiella oxytoca strain KONIH2 plasmid pKOR-0e8e, complete sequence) position: , mismatch: 4, identity: 0.875

gccgtgggctaaccgtgcctgcagttttgaat	CRISPR spacer
gccctgggctaaccgcgcctgcagttttgagc	Protospacer
*** ***********.**************..

4. spacer 2.3|3614501|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to MK714353 (Klebsiella phage ST13-OXA48phi12.5, complete genome) position: , mismatch: 4, identity: 0.875

gccgtgggctaaccgtgcctgcagttttgaat	CRISPR spacer
gccctgggctaaccgcgcctgcagttttgagc	Protospacer
*** ***********.**************..

5. spacer 2.3|3614501|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to KY271395 (Klebsiella phage 2b LV-2017, complete genome) position: , mismatch: 4, identity: 0.875

gccgtgggctaaccgtgcctgcagttttgaat	CRISPR spacer
gccctgggctaaccgcgcctgcagttttgagc	Protospacer
*** ***********.**************..

6. spacer 2.3|3614501|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 4, identity: 0.875

gccgtgggctaaccgtgcctgcagttttgaat	CRISPR spacer
gccctgggctaaccgcgcctgcagttttgagc	Protospacer
*** ***********.**************..

7. spacer 2.3|3614501|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to KY271396 (Klebsiella phage 2 LV-2017, complete genome) position: , mismatch: 4, identity: 0.875

gccgtgggctaaccgtgcctgcagttttgaat	CRISPR spacer
gccctgggctaaccgcgcctgcagttttgagc	Protospacer
*** ***********.**************..

8. spacer 2.3|3614501|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 4, identity: 0.875

gccgtgggctaaccgtgcctgcagttttgaat	CRISPR spacer
gccctgggctaaccgcgcctgcagttttgagc	Protospacer
*** ***********.**************..

9. spacer 2.3|3614501|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 4, identity: 0.875

gccgtgggctaaccgtgcctgcagttttgaat	CRISPR spacer
gccctgggctaaccgcgcctgcagttttgagc	Protospacer
*** ***********.**************..

10. spacer 4.4|4281394|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035707 (Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt13, complete sequence) position: , mismatch: 5, identity: 0.844

gcgcgccagcgtgccggtcatagctgcggctt-	CRISPR spacer
tcgcgccagcgtgccggtcatcgcc-cggcctg	Protospacer
 ******************** **. ****.* 

11. spacer 2.4|3614562|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 6, identity: 0.812

tcctggaatacgaacgtttccagatctgagcg-	CRISPR spacer
tcctgaaatacgaacatttccag-cctgcacgt	Protospacer
*****.*********.******* .*** .** 

12. spacer 4.4|4281394|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021031 (Rhizobium sp. NXC14 plasmid pRspNXC14a, complete sequence) position: , mismatch: 6, identity: 0.812

---gcgcgccagcgtgccggtcatagctgcggctt	CRISPR spacer
atcgtgcgc---cgtaccggtcatagccgcggctt	Protospacer
   *.****   ***.***********.*******

13. spacer 4.4|4281394|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 6, identity: 0.812

---gcgcgccagcgtgccggtcatagctgcggctt	CRISPR spacer
atcgtgcgc---cgtaccggtcatagccgcggctt	Protospacer
   *.****   ***.***********.*******

14. spacer 4.4|4281394|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to CP006879 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence) position: , mismatch: 6, identity: 0.812

---gcgcgccagcgtgccggtcatagctgcggctt	CRISPR spacer
atcgtgcgc---cgtaccggtcatagccgcggctt	Protospacer
   *.****   ***.***********.*******

15. spacer 1.5|1924812|32|NZ_CP046115|CRISPRCasFinder matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 7, identity: 0.781

agttaaca--gacaagcgtctaagccggcttcat	CRISPR spacer
--ttgagatcgacaagcgtctgagcaggcttcag	Protospacer
  **.* *  ***********.*** ******* 

16. spacer 1.2|1924753|31|NZ_CP046115|PILER-CR matches to NC_015314 (Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence) position: , mismatch: 9, identity: 0.71

aaaacgaacgcgaccaggggatggagcgttt	CRISPR spacer
gtcgggaccgcgaccaggggattgagcgggt	Protospacer
.  . ** ************** *****  *

17. spacer 1.2|1924753|31|NZ_CP046115|PILER-CR matches to NZ_CP030220 (Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence) position: , mismatch: 9, identity: 0.71

aaaacgaacgcgaccaggggatggagcgttt	CRISPR spacer
ccagtgaacgtgagcaggggatggagcgggc	Protospacer
  *..*****.** **************  .

18. spacer 1.4|1924752|32|NZ_CP046115|CRISPRCasFinder matches to NZ_CP030220 (Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaacgaacgcgaccaggggatggagcgttt	CRISPR spacer
accagtgaacgtgagcaggggatggagcgggc	Protospacer
*  *..*****.** **************  .

19. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013502 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S23-C10) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

20. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013783 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S24-C161, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

21. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013505 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S38-C26) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

22. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013504 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S34-C29) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

23. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP014448 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S35-C81, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

24. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013794 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S41-C142, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

25. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013796 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S44-C315, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

26. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to GU943046 (Uncultured phage MedDCM-OCT-S12-C496 genomic sequence) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

27. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013795 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S43-C156, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

28. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013506 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S42-C35) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

29. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013786 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S31-C108, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

30. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013503 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S29-C22) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

31. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to GU943055 (Uncultured phage MedDCM-OCT-S04-C26 genomic sequence) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

32. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013785 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S30-C161, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

33. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013789 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S33-C266, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

34. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013791 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S36-C101, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

35. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013793 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S39-C151, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

36. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013784 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S27-C105, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

37. spacer 4.6|4281516|32|NZ_CP046115|CRISPRCasFinder,CRT,PILER-CR matches to AP013787 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S32-C104, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

ataaaaggtttaaagactcagactgcaaaata	CRISPR spacer
agtatgacattaaagactcaaacggcaaaata	Protospacer
*  * ..  ***********.** ********

38. spacer 1.4|1924752|32|NZ_CP046115|CRISPRCasFinder matches to NC_015314 (Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence) position: , mismatch: 10, identity: 0.688

aaaaacgaacgcgaccaggggatggagcgttt	CRISPR spacer
ggtcgggaccgcgaccaggggattgagcgggt	Protospacer
..  . ** ************** *****  *

39. spacer 1.5|1924812|32|NZ_CP046115|CRISPRCasFinder matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 10, identity: 0.688

agttaacagacaagcgtctaagccggcttcat	CRISPR spacer
ctgagatcgacaagcgtctgagcaggcttcag	Protospacer
    .*. ***********.*** ******* 

40. spacer 1.5|1924812|32|NZ_CP046115|CRISPRCasFinder matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 10, identity: 0.688

agttaacagacaagcgtctaagccggcttcat	CRISPR spacer
ctgagatcgacaagcgtctgagcaggcttcag	Protospacer
    .*. ***********.*** ******* 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2375438 : 2389518 19 Klebsiella_phage(23.08%) integrase,holin attL 2378118:2378133|attR 2400071:2400086
DBSCAN-SWA_2 2457315 : 2487419 24 Klebsiella_phage(20.0%) tRNA,tail,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage