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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046117 Enterobacter cloacae strain CBG15936 plasmid pTEM-CBG, complete sequence 0 crisprs RT 0 0 1 0
NZ_CP046118 Enterobacter cloacae strain CBG15936 plasmid pNDM1-CBG, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP046116 Enterobacter cloacae strain CBG15936 chromosome, complete genome 5 crisprs csa3,WYL,DEDDh,DinG,cas3,RT 0 7 6 0

Results visualization

1. NZ_CP046117
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1796 : 15863 14 Escherichia_phage(50.0%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP046118
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 43368 44 Burkholderia_phage(20.0%) transposase,integrase attL 3151:3168|attR 10335:10352
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP046116
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046116_1 724345-724476 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046116_2 1126957-1127089 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046116_3 1548181-1548688 Orphan I-F
8 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046116_4 1665435-1665524 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046116_5 1707665-1707754 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 MN856003 Bacteriophage sp. isolate 1, complete genome 32149-32180 0 1.0
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 KY979108 Escherichia phage ECP1, complete genome 34735-34766 0 1.0
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_031077 Enterobacter phage Tyrion, complete genome 38293-38324 0 1.0
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP028585 Escherichia coli strain WCHEC4533 plasmid p1_000533, complete sequence 67179-67210 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 LT906557 Escherichia coli isolate E. coli RL465 genome assembly, plasmid: II 63168-63199 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP032875 Escherichia coli strain WCHEC000837 plasmid p1_000837, complete sequence 47835-47866 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP039843 Escherichia coli O157:H7 strain USDA5905 plasmid pUSDA5905_1 52966-52997 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP022228 Escherichia coli strain WCHEC96200 plasmid p1_000200, complete sequence 88800-88831 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP023732 Escherichia coli strain FORC 064 plasmid pFORC64.1, complete sequence 50871-50902 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 CP043746 Escherichia coli strain CVM N16EC0879 plasmid pN16EC0879-2, complete sequence 17708-17739 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP009168 Escherichia coli 1303 plasmid p1303_95, complete sequence 68598-68629 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP040069 Escherichia coli strain A1_181 plasmid p_unnamed2, complete sequence 71532-71563 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 CP053410 Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence 44853-44884 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP034790 Escherichia coli strain ECCNB20-2 plasmid pTB423, complete sequence 60807-60838 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP034790 Escherichia coli strain ECCNB20-2 plasmid pTB423, complete sequence 64006-64037 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_017653 Escherichia coli O55:H7 str. RM12579 plasmid p12579_1, complete sequence 83418-83449 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP033632 Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence 112655-112686 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 KC911857 Salmonella phage SPC32N, complete genome 36759-36790 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 KC911856 Salmonella phage SPC32H, complete genome 36759-36790 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_002730 Enterobacteria phage HK620, complete genome 3654-3685 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_019710 Enterobacteria phage HK140, complete genome 25243-25274 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_016761 Salmonella phage SPN1S, complete genome 36783-36814 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_019711 Enterobacteria phage HK629, complete genome 30319-30350 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_016158 Escherichia phage HK639, complete genome 40565-40596 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 JQ691610 Salmonella phage SPN9TCW, complete genome 36788-36819 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 AF335538 Bacteriophage HK620, complete genome 3654-3685 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_019719 Enterobacteria phage HK633, complete genome 24460-24491 1 0.969
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 LT906557 Escherichia coli isolate E. coli RL465 genome assembly, plasmid: II 59662-59693 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 JQ182733 Enterobacterial phage mEp213, complete genome 26604-26635 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_019706 Enterobacteria phage mEp043 c-1, complete genome 26604-26635 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_019717 Enterobacteria phage HK225, complete genome 37113-37144 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP038506 Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence 7269-7300 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_KY075654 Escherichia coli strain Lishui142 plasmid pLishui142-1, complete sequence 11721-11752 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_KU922754 Kluyvera ascorbata strain WCH1410 plasmid pMCR_1410, complete sequence 4044-4075 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP019188 Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729 plasmid pATCC10729_02, complete sequence 59278-59309 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP019277 Escherichia coli strain 13P477T plasmid p13P477T-4, complete sequence 3718-3749 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP019277 Escherichia coli strain 13P477T plasmid p13P477T-4, complete sequence 66737-66768 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP038378 Escherichia coli O157:H7 strain F1273 plasmid pF1273-3, complete sequence 61124-61155 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP027443 Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence 2508-2539 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP027223 Escherichia coli strain 2015C-3101 plasmid unnamed2 59990-60021 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP027590 Escherichia coli strain 2014C-3011 plasmid unnamed2 58583-58614 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP013030 Escherichia coli strain 2012C-4227 plasmid unnamed2, complete sequence 59182-59213 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_AP018798 Escherichia coli strain E2855 plasmid pE2855-2, complete sequence 78102-78133 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 CP012494 Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence 53685-53716 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_013370 Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence 81775-81806 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_MK410117 Escherichia coli strain Ec-20Lar plasmid unnamed, complete sequence 70703-70734 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_MK455768 Escherichia coli strain Ec-2Lar plasmid pY-Ec2, complete sequence 70685-70716 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP012491 Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence 56000-56031 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP038288 Escherichia coli O157:H7 strain TX 376-2 plasmid pTX376-2, complete sequence 71481-71512 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 MH160767 Escherichia phage vB_EcoM-Ro157c2YLVW, complete genome 79606-79637 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_016160 Escherichia phage HK75, complete genome 23095-23126 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 MN340231 Escherichia phage phiv205-1, complete genome 41675-41706 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 CP000711 Enterobacteria phage CUS-3, complete genome 38284-38315 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_019714 Enterobacteria phage HK446, complete genome 22637-22668 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 JQ267518 Enterobacter phage phiKDA1, complete genome 4428-4459 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 MH370387 Salmonella phage S149, complete genome 6269-6300 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 MG407615 Salmonella phage Bp96115, partial genome 37578-37609 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 AF069529 Bacteriophage HK97, complete genome 22919-22950 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_002167 Enterobacteria phage HK97, complete genome 22919-22950 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 JQ011318 Escherichia phage TL-2011c, complete genome 7227-7258 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 JQ086374 Enterobacteria phage HK544, complete genome 23028-23059 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_019709 Enterobacteria phage mEpX1, complete genome 24289-24320 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 GQ422451 Enterobacteria phage Phi75, partial genome 7199-7230 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_049953 Escherichia phage Lambda_ev099 genome assembly, chromosome: 1 29678-29709 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 GQ422450 Enterobacteria phage UAB_Phi20, complete genome 35358-35389 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_005841 Enterobacteria phage ST104 DNA, complete genome 6269-6300 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 JQ011317 Escherichia phage TL-2011b, complete genome 9081-9112 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 KJ749827 Escherichia phage ECBP5, complete genome 5392-5423 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 MT932212 Salmonella phage VSe13, complete genome 24191-24222 2 0.938
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 288484-288515 3 0.906
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 KY914478 Escherichia phage ArgO145, complete genome 6247-6278 3 0.906
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 AM491472 Salmonella phage E1 complete genome 43211-43242 3 0.906
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_010495 Salmonella phage E1, complete genome 43211-43242 3 0.906
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_AP018804 Escherichia coli strain E2863 plasmid pE2863-2, complete sequence 22419-22450 3 0.906
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP021537 Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence 26228-26259 3 0.906
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP029365 Escherichia coli strain WCHEC035148 plasmid p1_035148, complete sequence 68678-68709 3 0.906
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_019705 Enterobacteria phage mEpX2, complete genome 21783-21814 3 0.906
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_019769 Enterobacteria phage HK542, complete genome 22241-22272 4 0.875
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 MT833387 Escherichia phage HF4s, complete genome 23364-23395 4 0.875
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 MT261384 Salmonella virus PAT1, complete genome 20364-20395 4 0.875
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 MT580116 Salmonella phage 65FD, complete genome 22620-22651 4 0.875
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 MT580117 Salmonella phage 66FD, complete genome 13458-13489 4 0.875
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_006949 Enterobacteria phage ES18, complete genome 31004-31035 5 0.844
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 AY736146 Salmonella typhimurium bacteriophage ES18, complete sequence 31004-31035 5 0.844
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NC_047875 Salmonella phage UPF_BP1, complete genome 36824-36855 5 0.844
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 JQ182729 Enterobacterial phage mEp390, complete genome 25302-25333 5 0.844
NZ_CP046116_1 1.1|724369|30|NZ_CP046116|CRISPRCasFinder 724369-724398 30 NZ_CP017753 Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence 49531-49560 6 0.8
NZ_CP046116_1 1.1|724369|30|NZ_CP046116|CRISPRCasFinder 724369-724398 30 NZ_CP017750 Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence 436076-436105 6 0.8
NZ_CP046116_1 1.1|724369|30|NZ_CP046116|CRISPRCasFinder 724369-724398 30 NZ_CP032695 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence 1386373-1386402 6 0.8
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP021537 Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence 22423-22454 6 0.812
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP015738 Shinella sp. HZN7 plasmid pShin-02, complete sequence 400229-400260 6 0.812
NZ_CP046116_3 3.8|1548629|32|NZ_CP046116|CRISPRCasFinder,CRT 1548629-1548660 32 NZ_CP040097 Pantoea sp. SO10 plasmid unnamed2, complete sequence 25879-25910 6 0.812
NZ_CP046116_1 1.1|724369|30|NZ_CP046116|CRISPRCasFinder 724369-724398 30 NZ_CP013600 Rhizobium sp. N741 plasmid pRspN741e, complete sequence 737346-737375 7 0.767
NZ_CP046116_1 1.1|724369|30|NZ_CP046116|CRISPRCasFinder 724369-724398 30 NZ_CP013504 Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence 737376-737405 7 0.767
NZ_CP046116_1 1.1|724369|30|NZ_CP046116|CRISPRCasFinder 724369-724398 30 NZ_CP013510 Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence 735787-735816 7 0.767
NZ_CP046116_1 1.1|724369|30|NZ_CP046116|CRISPRCasFinder 724369-724398 30 NZ_CP013521 Rhizobium sp. N113 plasmid pRspN113d, complete sequence 740034-740063 7 0.767
NZ_CP046116_1 1.1|724369|30|NZ_CP046116|CRISPRCasFinder 724369-724398 30 NZ_CP013494 Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence 726935-726964 7 0.767
NZ_CP046116_1 1.1|724369|30|NZ_CP046116|CRISPRCasFinder 724369-724398 30 NZ_CP013594 Rhizobium sp. N871 plasmid pRspN871d, complete sequence 737376-737405 7 0.767
NZ_CP046116_1 1.2|724423|30|NZ_CP046116|CRISPRCasFinder 724423-724452 30 NZ_CP030129 Indioceanicola profundi strain SCSIO 08040 plasmid unnamed3, complete sequence 125951-125980 7 0.767
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP021537 Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence 27811-27842 7 0.781
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP042620 Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-5, complete sequence 57335-57366 7 0.781
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP030188 Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence 69043-69074 7 0.781
NZ_CP046116_1 1.1|724369|30|NZ_CP046116|CRISPRCasFinder 724369-724398 30 NC_022049 Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence 341179-341208 8 0.733
NZ_CP046116_3 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548329-1548360 32 NZ_CP020393 Burkholderia vietnamiensis strain FDAARGOS_239 plasmid unnamed, complete sequence 100010-100041 8 0.75
NZ_CP046116_3 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548329-1548360 32 NZ_CP009629 Burkholderia vietnamiensis LMG 10929 plasmid pBVB_1, complete sequence 22338-22369 8 0.75
NZ_CP046116_3 3.4|1548389|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548389-1548420 32 NZ_LR594670 Variovorax sp. SRS16 plasmid 5 38880-38911 8 0.75
NZ_CP046116_3 3.4|1548389|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548389-1548420 32 NC_005793 Achromobacter denitrificans plasmid pEST4011, complete sequence 59877-59908 8 0.75
NZ_CP046116_3 3.4|1548389|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548389-1548420 32 NC_019378 Burkholderia cepacia plasmid pIJB1, complete sequence 98638-98669 8 0.75
NZ_CP046116_3 3.4|1548389|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548389-1548420 32 NZ_LR594674 Variovorax sp. PBL-E5 plasmid 4 1203-1234 8 0.75
NZ_CP046116_3 3.4|1548389|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548389-1548420 32 NZ_LR594665 Variovorax sp. RA8 plasmid 4 38880-38911 8 0.75
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP028585 Escherichia coli strain WCHEC4533 plasmid p1_000533, complete sequence 72965-72996 8 0.75
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP032875 Escherichia coli strain WCHEC000837 plasmid p1_000837, complete sequence 42049-42080 8 0.75
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP022228 Escherichia coli strain WCHEC96200 plasmid p1_000200, complete sequence 83014-83045 8 0.75
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP027309 Escherichia coli strain 2015C-3108 plasmid unnamed2, complete sequence 37489-37520 8 0.75
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 CP050999 Escherichia coli O39:NM str. F8704-2 plasmid pF8704-2_2 45498-45529 8 0.75
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP031917 Escherichia coli O45:H2 strain FWSEC0003 plasmid unnamed11, complete sequence 81792-81823 8 0.75
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_CP028198 Salmonella enterica subsp. enterica serovar Concord strain CFSAN018747 plasmid pGMI14-002_2, complete sequence 24348-24379 8 0.75
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_MN101851 Escherichia coli strain 13ZX28 plasmid p13ZX28-90, complete sequence 85414-85445 8 0.75
NZ_CP046116_3 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548449-1548480 32 NZ_MN101855 Escherichia coli strain 13ZX36 plasmid p13ZX36-90, complete sequence 86300-86331 8 0.75
NZ_CP046116_1 1.1|724369|30|NZ_CP046116|CRISPRCasFinder 724369-724398 30 MF417874 Uncultured Caudovirales phage clone 3S_14, partial genome 5991-6020 9 0.7
NZ_CP046116_1 1.1|724369|30|NZ_CP046116|CRISPRCasFinder 724369-724398 30 NZ_CP049244 Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence 707379-707408 9 0.7
NZ_CP046116_1 1.2|724423|30|NZ_CP046116|CRISPRCasFinder 724423-724452 30 MN228696 Sinorhizobium phage ort11, complete genome 49251-49280 9 0.7
NZ_CP046116_3 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548329-1548360 32 MN586025 Mycobacterium phage Mdavu, complete genome 49912-49943 9 0.719
NZ_CP046116_3 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548329-1548360 32 KT281789 Mycobacterium phage Enkosi, complete genome 52521-52552 9 0.719
NZ_CP046116_3 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548329-1548360 32 MH020245 Mycobacterium phage SgtBeansprout, complete genome 49908-49939 9 0.719
NZ_CP046116_3 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548329-1548360 32 KX808132 Mycobacterium phage Amelie, complete genome 49908-49939 9 0.719
NZ_CP046116_3 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548329-1548360 32 MH399770 Mycobacterium phage Biglebops, complete genome 49923-49954 9 0.719
NZ_CP046116_3 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548329-1548360 32 MF919518 Mycobacterium phage LilPharaoh, complete genome 49636-49667 9 0.719
NZ_CP046116_3 3.7|1548569|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548569-1548600 32 NZ_CP041355 Pseudomonas aeruginosa strain AZPAE15042 plasmid pIHMA87, complete sequence 43751-43782 9 0.719
NZ_CP046116_3 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT 1548329-1548360 32 NC_019789 Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence 414795-414826 10 0.688

1. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to MN856003 (Bacteriophage sp. isolate 1, complete genome) position: , mismatch: 0, identity: 1.0

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccaggaaagcgtcgg	Protospacer
********************************

2. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to KY979108 (Escherichia phage ECP1, complete genome) position: , mismatch: 0, identity: 1.0

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccaggaaagcgtcgg	Protospacer
********************************

3. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_031077 (Enterobacter phage Tyrion, complete genome) position: , mismatch: 0, identity: 1.0

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccaggaaagcgtcgg	Protospacer
********************************

4. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028585 (Escherichia coli strain WCHEC4533 plasmid p1_000533, complete sequence) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttccgccaggaaagcgtcgg	Protospacer
*************** ****************

5. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to LT906557 (Escherichia coli isolate E. coli RL465 genome assembly, plasmid: II) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttccgccaggaaagcgtcgg	Protospacer
*************** ****************

6. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032875 (Escherichia coli strain WCHEC000837 plasmid p1_000837, complete sequence) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttccgccaggaaagcgtcgg	Protospacer
*************** ****************

7. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039843 (Escherichia coli O157:H7 strain USDA5905 plasmid pUSDA5905_1) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgaacttcagccaggaaagcgtcgg	Protospacer
********* **********************

8. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022228 (Escherichia coli strain WCHEC96200 plasmid p1_000200, complete sequence) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttccgccaggaaagcgtcgg	Protospacer
*************** ****************

9. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023732 (Escherichia coli strain FORC 064 plasmid pFORC64.1, complete sequence) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccaggaaagcatcgg	Protospacer
***************************.****

10. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to CP043746 (Escherichia coli strain CVM N16EC0879 plasmid pN16EC0879-2, complete sequence) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttccgccaggaaagcgtcgg	Protospacer
*************** ****************

11. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009168 (Escherichia coli 1303 plasmid p1303_95, complete sequence) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccaggaaagcatcgg	Protospacer
***************************.****

12. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040069 (Escherichia coli strain A1_181 plasmid p_unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccaggaaagcatcgg	Protospacer
***************************.****

13. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to CP053410 (Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccagaaaagcgtcgg	Protospacer
*********************.**********

14. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034790 (Escherichia coli strain ECCNB20-2 plasmid pTB423, complete sequence) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttccgccaggaaagcgtcgg	Protospacer
*************** ****************

15. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034790 (Escherichia coli strain ECCNB20-2 plasmid pTB423, complete sequence) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcacgcacttcagccaggaaagcgtcgg	Protospacer
****** *************************

16. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_017653 (Escherichia coli O55:H7 str. RM12579 plasmid p12579_1, complete sequence) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgaacttcagccaggaaagcgtcgg	Protospacer
********* **********************

17. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccaggaaagcatcgg	Protospacer
***************************.****

18. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to KC911857 (Salmonella phage SPC32N, complete genome) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccagaaaagcgtcgg	Protospacer
*********************.**********

19. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to KC911856 (Salmonella phage SPC32H, complete genome) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccagaaaagcgtcgg	Protospacer
*********************.**********

20. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_002730 (Enterobacteria phage HK620, complete genome) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgtacttcagccaggaaagcgtcgg	Protospacer
*********.**********************

21. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_019710 (Enterobacteria phage HK140, complete genome) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccaggaaggcgtcgg	Protospacer
************************.*******

22. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_016761 (Salmonella phage SPN1S, complete genome) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccagaaaagcgtcgg	Protospacer
*********************.**********

23. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_019711 (Enterobacteria phage HK629, complete genome) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccggacttcagccaggaaagcgtcgg	Protospacer
********* **********************

24. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_016158 (Escherichia phage HK639, complete genome) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgagcccgcacttcagccaggaaagcgtcgg	Protospacer
*** ****************************

25. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to JQ691610 (Salmonella phage SPN9TCW, complete genome) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccagaaaagcgtcgg	Protospacer
*********************.**********

26. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to AF335538 (Bacteriophage HK620, complete genome) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgtacttcagccaggaaagcgtcgg	Protospacer
*********.**********************

27. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_019719 (Enterobacteria phage HK633, complete genome) position: , mismatch: 1, identity: 0.969

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgtacttcagccaggaaagcgtcgg	Protospacer
*********.**********************

28. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to LT906557 (Escherichia coli isolate E. coli RL465 genome assembly, plasmid: II) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgtacttcagccaggaaagcatcgg	Protospacer
*********.*****************.****

29. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to JQ182733 (Enterobacterial phage mEp213, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
atgcgcccgcgcttcagccaggaaagcgtcgg	Protospacer
 *********.*********************

30. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_019706 (Enterobacteria phage mEp043 c-1, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
atgcgcccgcgcttcagccaggaaagcgtcgg	Protospacer
 *********.*********************

31. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_019717 (Enterobacteria phage HK225, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ttgcgcccgcacttcagccaggaaagcgtctg	Protospacer
.***************************** *

32. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgtacttcagccaggaaagcatcgg	Protospacer
*********.*****************.****

33. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY075654 (Escherichia coli strain Lishui142 plasmid pLishui142-1, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgccctcacttcagccaggaaagcatcgg	Protospacer
******** ******************.****

34. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU922754 (Kluyvera ascorbata strain WCH1410 plasmid pMCR_1410, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgccctcacttcagccaggaaagcatcgg	Protospacer
******** ******************.****

35. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019188 (Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729 plasmid pATCC10729_02, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagacaggaaagcatcgg	Protospacer
***************** *********.****

36. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019277 (Escherichia coli strain 13P477T plasmid p13P477T-4, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgccctcacttcagccaggaaagcatcgg	Protospacer
******** ******************.****

37. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019277 (Escherichia coli strain 13P477T plasmid p13P477T-4, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgccctcacttcagccaggaaagcatcgg	Protospacer
******** ******************.****

38. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038378 (Escherichia coli O157:H7 strain F1273 plasmid pF1273-3, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgagcttcagccaggaaagcgtcgg	Protospacer
********* .*********************

39. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccggacttcagccaagaaagcgtcgg	Protospacer
********* **********.***********

40. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgagcttcagccaggaaagcgtcgg	Protospacer
********* .*********************

41. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgagcttcagccaggaaagcgtcgg	Protospacer
********* .*********************

42. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013030 (Escherichia coli strain 2012C-4227 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgagcttcagccaggaaagcgtcgg	Protospacer
********* .*********************

43. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccggacttcagccaagaaagcgtcgg	Protospacer
********* **********.***********

44. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccggacttcagccaagaaagcgtcgg	Protospacer
********* **********.***********

45. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgagcttcagccaggaaagcgtcgg	Protospacer
********* .*********************

46. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK410117 (Escherichia coli strain Ec-20Lar plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagacaggaaagcatcgg	Protospacer
***************** *********.****

47. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK455768 (Escherichia coli strain Ec-2Lar plasmid pY-Ec2, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagacaggaaagcatcgg	Protospacer
***************** *********.****

48. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccggacttcagccaagaaagcgtcgg	Protospacer
********* **********.***********

49. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038288 (Escherichia coli O157:H7 strain TX 376-2 plasmid pTX376-2, complete sequence) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgagcttcagccaggaaagcgtcgg	Protospacer
********* .*********************

50. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to MH160767 (Escherichia phage vB_EcoM-Ro157c2YLVW, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgagcttcagccaggaaagcgtcgg	Protospacer
********* .*********************

51. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_016160 (Escherichia phage HK75, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgtacttcagccaggaaagcatcgg	Protospacer
*********.*****************.****

52. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to MN340231 (Escherichia phage phiv205-1, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccagaaaagcatcgg	Protospacer
*********************.*****.****

53. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to CP000711 (Enterobacteria phage CUS-3, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccagaaaagcatcgg	Protospacer
*********************.*****.****

54. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_019714 (Enterobacteria phage HK446, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgtacttcagccaggaaagcatcgg	Protospacer
*********.*****************.****

55. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to JQ267518 (Enterobacter phage phiKDA1, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ccgcgcccgcacttcagccaagaaagcgtcgg	Protospacer
*.******************.***********

56. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to MH370387 (Salmonella phage S149, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcacgcacttcatccaggaaagcgtcgg	Protospacer
****** ********* ***************

57. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to MG407615 (Salmonella phage Bp96115, partial genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcacgcacttcatccaggaaagcgtcgg	Protospacer
****** ********* ***************

58. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to AF069529 (Bacteriophage HK97, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgtacttcagccaggaaagcatcgg	Protospacer
*********.*****************.****

59. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_002167 (Enterobacteria phage HK97, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgtacttcagccaggaaagcatcgg	Protospacer
*********.*****************.****

60. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to JQ011318 (Escherichia phage TL-2011c, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccggacttcagccaggaaagcatcgg	Protospacer
********* *****************.****

61. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to JQ086374 (Enterobacteria phage HK544, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgtacttcagccaggaaagcatcgg	Protospacer
*********.*****************.****

62. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_019709 (Enterobacteria phage mEpX1, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgtacttcagccaggaaagcatcgg	Protospacer
*********.*****************.****

63. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to GQ422451 (Enterobacteria phage Phi75, partial genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcacgcacttcatccaggaaagcgtcgg	Protospacer
****** ********* ***************

64. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_049953 (Escherichia phage Lambda_ev099 genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgtacttcagccaggaaagcatcgg	Protospacer
*********.*****************.****

65. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to GQ422450 (Enterobacteria phage UAB_Phi20, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcacgcacttcatccaggaaagcgtcgg	Protospacer
****** ********* ***************

66. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_005841 (Enterobacteria phage ST104 DNA, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcacgcacttcatccaggaaagcgtcgg	Protospacer
****** ********* ***************

67. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to JQ011317 (Escherichia phage TL-2011b, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccggacttcagccaggaaagcatcgg	Protospacer
********* *****************.****

68. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to KJ749827 (Escherichia phage ECBP5, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgtacttcagccagaaaagcgtcgg	Protospacer
*********.***********.**********

69. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to MT932212 (Salmonella phage VSe13, complete genome) position: , mismatch: 2, identity: 0.938

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccggacttcagccaggaaagcatcgg	Protospacer
********* *****************.****

70. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 3, identity: 0.906

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ccccgcccgtacttcagccaggaaagcgtcgg	Protospacer
*. ******.**********************

71. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to KY914478 (Escherichia phage ArgO145, complete genome) position: , mismatch: 3, identity: 0.906

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ccccgcccgtacttcagccaggaaagcgtcgg	Protospacer
*. ******.**********************

72. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to AM491472 (Salmonella phage E1 complete genome) position: , mismatch: 3, identity: 0.906

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
atgcgcccgcacttcagccaggaaagcatcag	Protospacer
 **************************.**.*

73. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_010495 (Salmonella phage E1, complete genome) position: , mismatch: 3, identity: 0.906

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
atgcgcccgcacttcagccaggaaagcatcag	Protospacer
 **************************.**.*

74. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018804 (Escherichia coli strain E2863 plasmid pE2863-2, complete sequence) position: , mismatch: 3, identity: 0.906

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccggacttcagccaggaaagcatcag	Protospacer
********* *****************.**.*

75. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021537 (Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence) position: , mismatch: 3, identity: 0.906

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccggacttcagccaggaaagcatcag	Protospacer
********* *****************.**.*

76. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029365 (Escherichia coli strain WCHEC035148 plasmid p1_035148, complete sequence) position: , mismatch: 3, identity: 0.906

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccggacttcagccaggaaagcatcag	Protospacer
********* *****************.**.*

77. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_019705 (Enterobacteria phage mEpX2, complete genome) position: , mismatch: 3, identity: 0.906

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ccgcgcccgtacttcagccaggaaagcatcgg	Protospacer
*.*******.*****************.****

78. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_019769 (Enterobacteria phage HK542, complete genome) position: , mismatch: 4, identity: 0.875

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ctgcgcccgcacttcagccaggaaatcctggt	Protospacer
************************* * * * 

79. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to MT833387 (Escherichia phage HF4s, complete genome) position: , mismatch: 4, identity: 0.875

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
cttagcccggacttcagccaggaaagcatcgg	Protospacer
**  ***** *****************.****

80. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to MT261384 (Salmonella virus PAT1, complete genome) position: , mismatch: 4, identity: 0.875

-ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
actg-gcccgcacttcagccaggtacgcgtcgt	Protospacer
 *** ****************** * ****** 

81. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to MT580116 (Salmonella phage 65FD, complete genome) position: , mismatch: 4, identity: 0.875

-ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
actg-gcccgcacttcagccaggtacgcgtcgt	Protospacer
 *** ****************** * ****** 

82. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to MT580117 (Salmonella phage 66FD, complete genome) position: , mismatch: 4, identity: 0.875

-ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
actg-gcccgcacttcagccaggtacgcgtcgt	Protospacer
 *** ****************** * ****** 

83. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_006949 (Enterobacteria phage ES18, complete genome) position: , mismatch: 5, identity: 0.844

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
acttgcccgcacttcagccagaaaagcgtcgg	Protospacer
 . .*****************.**********

84. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to AY736146 (Salmonella typhimurium bacteriophage ES18, complete sequence) position: , mismatch: 5, identity: 0.844

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
acttgcccgcacttcagccagaaaagcgtcgg	Protospacer
 . .*****************.**********

85. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_047875 (Salmonella phage UPF_BP1, complete genome) position: , mismatch: 5, identity: 0.844

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
gcttgcccgcacttcagccaggaaggcgtcgg	Protospacer
 . .********************.*******

86. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 5, identity: 0.844

-ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
gctg-gcccgcacttcagccagaaaagcggatg	Protospacer
 *** *****************.******   *

87. spacer 1.1|724369|30|NZ_CP046116|CRISPRCasFinder matches to NZ_CP017753 (Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cagcgccgtcgccgtcatcatggccgccga	Protospacer
.* *.**********.***** ******* 

88. spacer 1.1|724369|30|NZ_CP046116|CRISPRCasFinder matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cagcgccgtcgccgtcatcatggccgccga	Protospacer
.* *.**********.***** ******* 

89. spacer 1.1|724369|30|NZ_CP046116|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 6, identity: 0.8

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
tattgccaccgccgttaccattgccgccgc	Protospacer
**...**..********.************

90. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021537 (Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence) position: , mismatch: 6, identity: 0.812

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ttcagtcttcacttcagccaggaaagcgtcgg	Protospacer
.*  *.*. ***********************

91. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015738 (Shinella sp. HZN7 plasmid pShin-02, complete sequence) position: , mismatch: 6, identity: 0.812

-ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
accgcg-ccgaacttcagccaggaaagcttcac	Protospacer
 *.*** *** ***************** **. 

92. spacer 3.8|1548629|32|NZ_CP046116|CRISPRCasFinder,CRT matches to NZ_CP040097 (Pantoea sp. SO10 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

cattcaaaccaaccgtctgcaaatcagattgc	CRISPR spacer
cattcaaaccaaccatctgcaaaaacaatcgc	Protospacer
**************.********   .**.**

93. spacer 1.1|724369|30|NZ_CP046116|CRISPRCasFinder matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 7, identity: 0.767

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
...* **********.*****.******* 

94. spacer 1.1|724369|30|NZ_CP046116|CRISPRCasFinder matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 7, identity: 0.767

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
...* **********.*****.******* 

95. spacer 1.1|724369|30|NZ_CP046116|CRISPRCasFinder matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 7, identity: 0.767

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
...* **********.*****.******* 

96. spacer 1.1|724369|30|NZ_CP046116|CRISPRCasFinder matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 7, identity: 0.767

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
...* **********.*****.******* 

97. spacer 1.1|724369|30|NZ_CP046116|CRISPRCasFinder matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 7, identity: 0.767

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
...* **********.*****.******* 

98. spacer 1.1|724369|30|NZ_CP046116|CRISPRCasFinder matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 7, identity: 0.767

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
...* **********.*****.******* 

99. spacer 1.2|724423|30|NZ_CP046116|CRISPRCasFinder matches to NZ_CP030129 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcattgttaccgccattatcag-	CRISPR spacer
ggccatggtcattgttgccgcca-tgtcgcc	Protospacer
 ***** *********.****** *.**.  

100. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021537 (Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence) position: , mismatch: 7, identity: 0.781

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ttcagtcttcacttcagccaagaaagcgtcgg	Protospacer
.*  *.*. ***********.***********

101. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042620 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-5, complete sequence) position: , mismatch: 7, identity: 0.781

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ttcagtcttcacttcagccaggaaagcatcgg	Protospacer
.*  *.*. ******************.****

102. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 7, identity: 0.781

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ttcagtcttcacttcagccaggaaagcatcgg	Protospacer
.*  *.*. ******************.****

103. spacer 1.1|724369|30|NZ_CP046116|CRISPRCasFinder matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 8, identity: 0.733

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
ggtttcggtcgccgatatcatggccgccgc	Protospacer
 ... * ******* ****** ********

104. spacer 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020393 (Burkholderia vietnamiensis strain FDAARGOS_239 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

agcgacaccccgacacggcgcgccggt-gttga	CRISPR spacer
ctacacacgccgagacggcgcgccggtcgatg-	Protospacer
    **** **** ************* * ** 

105. spacer 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009629 (Burkholderia vietnamiensis LMG 10929 plasmid pBVB_1, complete sequence) position: , mismatch: 8, identity: 0.75

agcgacaccccgacacggcgcgccggt-gttga	CRISPR spacer
ctacacacgccgagacggcgcgccggtcgatg-	Protospacer
    **** **** ************* * ** 

106. spacer 3.4|1548389|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594670 (Variovorax sp. SRS16 plasmid 5) position: , mismatch: 8, identity: 0.75

accagccgcgccgcacttaaacggcggggttt	CRISPR spacer
ccgactggcgccgcacttaaacggcaggtttc	Protospacer
 * * . ******************.** **.

107. spacer 3.4|1548389|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_005793 (Achromobacter denitrificans plasmid pEST4011, complete sequence) position: , mismatch: 8, identity: 0.75

accagccgcgccgcacttaaacggcggggttt	CRISPR spacer
ccgactggcgccgcacttaaacggcaggtttc	Protospacer
 * * . ******************.** **.

108. spacer 3.4|1548389|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_019378 (Burkholderia cepacia plasmid pIJB1, complete sequence) position: , mismatch: 8, identity: 0.75

accagccgcgccgcacttaaacggcggggttt	CRISPR spacer
ccgactggcgccgcacttaaacggcaggtttc	Protospacer
 * * . ******************.** **.

109. spacer 3.4|1548389|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594674 (Variovorax sp. PBL-E5 plasmid 4) position: , mismatch: 8, identity: 0.75

accagccgcgccgcacttaaacggcggggttt	CRISPR spacer
ccgactggcgccgcacttaaacggcaggtttc	Protospacer
 * * . ******************.** **.

110. spacer 3.4|1548389|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594665 (Variovorax sp. RA8 plasmid 4) position: , mismatch: 8, identity: 0.75

accagccgcgccgcacttaaacggcggggttt	CRISPR spacer
ccgactggcgccgcacttaaacggcaggtttc	Protospacer
 * * . ******************.** **.

111. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028585 (Escherichia coli strain WCHEC4533 plasmid p1_000533, complete sequence) position: , mismatch: 8, identity: 0.75

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ttcagtcttcacttcatccaggaaagtgtcgg	Protospacer
.*  *.*. ******* *********.*****

112. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032875 (Escherichia coli strain WCHEC000837 plasmid p1_000837, complete sequence) position: , mismatch: 8, identity: 0.75

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ttcagtcttcacttcatccaggaaagtgtcgg	Protospacer
.*  *.*. ******* *********.*****

113. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022228 (Escherichia coli strain WCHEC96200 plasmid p1_000200, complete sequence) position: , mismatch: 8, identity: 0.75

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ttcagtcttcacttcatccaggaaagtgtcgg	Protospacer
.*  *.*. ******* *********.*****

114. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027309 (Escherichia coli strain 2015C-3108 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ttcagtcttcacttcatccaggaaagtgtcgg	Protospacer
.*  *.*. ******* *********.*****

115. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to CP050999 (Escherichia coli O39:NM str. F8704-2 plasmid pF8704-2_2) position: , mismatch: 8, identity: 0.75

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ttcagtcttcacttcatccaggaaagtgtcgg	Protospacer
.*  *.*. ******* *********.*****

116. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031917 (Escherichia coli O45:H2 strain FWSEC0003 plasmid unnamed11, complete sequence) position: , mismatch: 8, identity: 0.75

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ttcagtcttcacttcatccaggaaagtgtcgg	Protospacer
.*  *.*. ******* *********.*****

117. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028198 (Salmonella enterica subsp. enterica serovar Concord strain CFSAN018747 plasmid pGMI14-002_2, complete sequence) position: , mismatch: 8, identity: 0.75

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ttcagtcttcacttcatccaggaaagtgtcgg	Protospacer
.*  *.*. ******* *********.*****

118. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MN101851 (Escherichia coli strain 13ZX28 plasmid p13ZX28-90, complete sequence) position: , mismatch: 8, identity: 0.75

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ttcagtcttcacttcatccaggaaagtgtcgg	Protospacer
.*  *.*. ******* *********.*****

119. spacer 3.5|1548449|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MN101855 (Escherichia coli strain 13ZX36 plasmid p13ZX36-90, complete sequence) position: , mismatch: 8, identity: 0.75

ctgcgcccgcacttcagccaggaaagcgtcgg	CRISPR spacer
ttcagtcttcacttcatccaggaaagtgtcgg	Protospacer
.*  *.*. ******* *********.*****

120. spacer 1.1|724369|30|NZ_CP046116|CRISPRCasFinder matches to MF417874 (Uncultured Caudovirales phage clone 3S_14, partial genome) position: , mismatch: 9, identity: 0.7

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
gcccagcgtagccgttatcattgccaaacg	Protospacer
  *** *** ***************.    

121. spacer 1.1|724369|30|NZ_CP046116|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.7

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
aaagcccgtcgccgttatcatcgccgaaat	Protospacer
 *   ****************.****  ..

122. spacer 1.2|724423|30|NZ_CP046116|CRISPRCasFinder matches to MN228696 (Sinorhizobium phage ort11, complete genome) position: , mismatch: 9, identity: 0.7

tgccattgtcattgttaccgccattatcag	CRISPR spacer
cctgtttgtcattgttattgccattatctc	Protospacer
. .  ************..*********  

123. spacer 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to MN586025 (Mycobacterium phage Mdavu, complete genome) position: , mismatch: 9, identity: 0.719

agcgacaccccgacacggcgcgccggtgttga	CRISPR spacer
agcgacacgccgacacggcgcccctgcccgag	Protospacer
******** ************ ** *. . ..

124. spacer 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to KT281789 (Mycobacterium phage Enkosi, complete genome) position: , mismatch: 9, identity: 0.719

agcgacaccccgacacggcgcgccggtgttga	CRISPR spacer
agcgacacgccgacacggcgcccctgcccgag	Protospacer
******** ************ ** *. . ..

125. spacer 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to MH020245 (Mycobacterium phage SgtBeansprout, complete genome) position: , mismatch: 9, identity: 0.719

agcgacaccccgacacggcgcgccggtgttga	CRISPR spacer
agcgacacgccgacacggcgcccctgcccgag	Protospacer
******** ************ ** *. . ..

126. spacer 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to KX808132 (Mycobacterium phage Amelie, complete genome) position: , mismatch: 9, identity: 0.719

agcgacaccccgacacggcgcgccggtgttga	CRISPR spacer
agcgacacgccgacacggcgcccctgcccgag	Protospacer
******** ************ ** *. . ..

127. spacer 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to MH399770 (Mycobacterium phage Biglebops, complete genome) position: , mismatch: 9, identity: 0.719

agcgacaccccgacacggcgcgccggtgttga	CRISPR spacer
agcgacacgccgacacggcgcccctgcccgag	Protospacer
******** ************ ** *. . ..

128. spacer 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to MF919518 (Mycobacterium phage LilPharaoh, complete genome) position: , mismatch: 9, identity: 0.719

agcgacaccccgacacggcgcgccggtgttga	CRISPR spacer
agcgacacgccgacacggcgcccctgcccgag	Protospacer
******** ************ ** *. . ..

129. spacer 3.7|1548569|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041355 (Pseudomonas aeruginosa strain AZPAE15042 plasmid pIHMA87, complete sequence) position: , mismatch: 9, identity: 0.719

cgatgtgatgacccggtatcagatcgacgacg	CRISPR spacer
aaaggaattgaccccgtatcagctcgacgact	Protospacer
 .* * . ****** ******* ******** 

130. spacer 3.3|1548329|32|NZ_CP046116|PILER-CR,CRISPRCasFinder,CRT matches to NC_019789 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence) position: , mismatch: 10, identity: 0.688

agcgacaccccgacacggcgcgccggtgttga	CRISPR spacer
ggcgtcaccccgacacgccgcgccagctccag	Protospacer
.*** ************ ******.*. ....

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1640110 : 1774935 148 Enterobacteria_phage(37.5%) tRNA,head,capsid,terminase,tail,holin,portal,protease NA
DBSCAN-SWA_2 1957689 : 2036502 91 Escherichia_phage(18.92%) tRNA,terminase,tail,holin,plate,portal,transposase,protease NA
DBSCAN-SWA_3 3133774 : 3179944 70 Cronobacter_phage(25.86%) holin,head,terminase,integrase attL 3158930:3158944|attR 3186101:3186115
DBSCAN-SWA_4 3263916 : 3271668 7 Bodo_saltans_virus(16.67%) NA NA
DBSCAN-SWA_5 3466779 : 3475862 7 Pseudomonas_phage(33.33%) holin NA
DBSCAN-SWA_6 4219407 : 4272418 49 uncultured_Caudovirales_phage(47.37%) tRNA,head,capsid,terminase,tail,portal,transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage