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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046114 Glaesserella parasuis strain SCW0912 chromosome, complete genome 7 crisprs DinG,PD-DExK,DEDDh,WYL,cas3,cas2 8 3 13 1

Results visualization

1. NZ_CP046114
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046114_1 9209-9334 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046114_2 941909-942007 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046114_3 990712-990810 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046114_4 1031080-1031597 Orphan NA
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046114_5 1162658-1162756 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046114_6 1631175-1631388 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046114_7 1908030-1908111 Unclear NA
1 spacers
cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP046114_4 4.2|1031193|49|NZ_CP046114|CRT 1031193-1031241 49 NZ_CP046114.1 655266-655314 0 1.0
NZ_CP046114_4 4.2|1031193|49|NZ_CP046114|CRT 1031193-1031241 49 NZ_CP046114.1 1630893-1630941 0 1.0
NZ_CP046114_4 4.3|1031265|31|NZ_CP046114|CRT 1031265-1031295 31 NZ_CP046114.1 196281-196311 0 1.0
NZ_CP046114_4 4.3|1031265|31|NZ_CP046114|CRT 1031265-1031295 31 NZ_CP046114.1 1630929-1630959 0 1.0
NZ_CP046114_4 4.3|1031265|31|NZ_CP046114|CRT 1031265-1031295 31 NZ_CP046114.1 1892285-1892315 0 1.0
NZ_CP046114_4 4.4|1031319|40|NZ_CP046114|CRT 1031319-1031358 40 NZ_CP046114.1 196218-196257 0 1.0
NZ_CP046114_4 4.4|1031319|40|NZ_CP046114|CRT 1031319-1031358 40 NZ_CP046114.1 655356-655395 0 1.0
NZ_CP046114_4 4.4|1031319|40|NZ_CP046114|CRT 1031319-1031358 40 NZ_CP046114.1 1892339-1892378 0 1.0
NZ_CP046114_4 4.5|1031382|40|NZ_CP046114|CRT 1031382-1031421 40 NZ_CP046114.1 1631028-1631067 0 1.0
NZ_CP046114_4 4.6|1031445|40|NZ_CP046114|CRT 1031445-1031484 40 NZ_CP046114.1 1410898-1410937 0 1.0
NZ_CP046114_6 6.1|1631200|38|NZ_CP046114|CRT 1631200-1631237 38 NZ_CP046114.1 655357-655394 0 1.0
NZ_CP046114_6 6.1|1631200|38|NZ_CP046114|CRT 1631200-1631237 38 NZ_CP046114.1 1892340-1892377 0 1.0
NZ_CP046114_6 6.1|1631200|38|NZ_CP046114|CRT 1631200-1631237 38 NZ_CP046114.1 196219-196256 0 1.0
NZ_CP046114_6 6.2|1631263|38|NZ_CP046114|CRT 1631263-1631300 38 NZ_CP046114.1 1631029-1631066 0 1.0
NZ_CP046114_4 4.3|1031265|31|NZ_CP046114|CRT 1031265-1031295 31 NZ_CP046114.1 1631145-1631175 1 0.968
NZ_CP046114_4 4.4|1031319|40|NZ_CP046114|CRT 1031319-1031358 40 NZ_CP046114.1 1630965-1631004 1 0.975
NZ_CP046114_4 4.6|1031445|40|NZ_CP046114|CRT 1031445-1031484 40 NZ_CP046114.1 655446-655485 1 0.975
NZ_CP046114_4 4.6|1031445|40|NZ_CP046114|CRT 1031445-1031484 40 NZ_CP046114.1 1194791-1194830 1 0.975
NZ_CP046114_4 4.6|1031445|40|NZ_CP046114|CRT 1031445-1031484 40 NZ_CP046114.1 1892537-1892576 1 0.975
NZ_CP046114_6 6.1|1631200|38|NZ_CP046114|CRT 1631200-1631237 38 NZ_CP046114.1 1630966-1631003 1 0.974
NZ_CP046114_6 6.2|1631263|38|NZ_CP046114|CRT 1631263-1631300 38 NZ_CP046114.1 1410962-1410999 1 0.974
NZ_CP046114_6 6.3|1631326|38|NZ_CP046114|CRT 1631326-1631363 38 NZ_CP046114.1 1410899-1410936 1 0.974
NZ_CP046114_4 4.3|1031265|31|NZ_CP046114|CRT 1031265-1031295 31 NZ_CP046114.1 655302-655332 2 0.935
NZ_CP046114_6 6.3|1631326|38|NZ_CP046114|CRT 1631326-1631363 38 NZ_CP046114.1 196030-196067 2 0.947
NZ_CP046114_6 6.3|1631326|38|NZ_CP046114|CRT 1631326-1631363 38 NZ_CP046114.1 1194792-1194829 2 0.947
NZ_CP046114_6 6.3|1631326|38|NZ_CP046114|CRT 1631326-1631363 38 NZ_CP046114.1 1892538-1892575 2 0.947

1. spacer 4.2|1031193|49|NZ_CP046114|CRT matches to position: 655266-655314, mismatch: 0, identity: 1.0

agcaggggctgctggtcctaagggggataaaggcgaaccaggacaagcg	CRISPR spacer
agcaggggctgctggtcctaagggggataaaggcgaaccaggacaagcg	Protospacer
*************************************************

2. spacer 4.2|1031193|49|NZ_CP046114|CRT matches to position: 1630893-1630941, mismatch: 0, identity: 1.0

agcaggggctgctggtcctaagggggataaaggcgaaccaggacaagcg	CRISPR spacer
agcaggggctgctggtcctaagggggataaaggcgaaccaggacaagcg	Protospacer
*************************************************

3. spacer 4.3|1031265|31|NZ_CP046114|CRT matches to position: 196281-196311, mismatch: 0, identity: 1.0

accaggacaagcgggtccagcaggaccacga	CRISPR spacer
accaggacaagcgggtccagcaggaccacga	Protospacer
*******************************

4. spacer 4.3|1031265|31|NZ_CP046114|CRT matches to position: 1630929-1630959, mismatch: 0, identity: 1.0

accaggacaagcgggtccagcaggaccacga	CRISPR spacer
accaggacaagcgggtccagcaggaccacga	Protospacer
*******************************

5. spacer 4.3|1031265|31|NZ_CP046114|CRT matches to position: 1892285-1892315, mismatch: 0, identity: 1.0

accaggacaagcgggtccagcaggaccacga	CRISPR spacer
accaggacaagcgggtccagcaggaccacga	Protospacer
*******************************

6. spacer 4.4|1031319|40|NZ_CP046114|CRT matches to position: 196218-196257, mismatch: 0, identity: 1.0

tgcaggtccaaaaggtgatacaggtcagagaggtgaaact	CRISPR spacer
tgcaggtccaaaaggtgatacaggtcagagaggtgaaact	Protospacer
****************************************

7. spacer 4.4|1031319|40|NZ_CP046114|CRT matches to position: 655356-655395, mismatch: 0, identity: 1.0

tgcaggtccaaaaggtgatacaggtcagagaggtgaaact	CRISPR spacer
tgcaggtccaaaaggtgatacaggtcagagaggtgaaact	Protospacer
****************************************

8. spacer 4.4|1031319|40|NZ_CP046114|CRT matches to position: 1892339-1892378, mismatch: 0, identity: 1.0

tgcaggtccaaaaggtgatacaggtcagagaggtgaaact	CRISPR spacer
tgcaggtccaaaaggtgatacaggtcagagaggtgaaact	Protospacer
****************************************

9. spacer 4.5|1031382|40|NZ_CP046114|CRT matches to position: 1631028-1631067, mismatch: 0, identity: 1.0

aaagggtgaaccgggtcctaaaggtgaacaaggtattcca	CRISPR spacer
aaagggtgaaccgggtcctaaaggtgaacaaggtattcca	Protospacer
****************************************

10. spacer 4.6|1031445|40|NZ_CP046114|CRT matches to position: 1410898-1410937, mismatch: 0, identity: 1.0

taagggtgacaaaggtgatacgggtccagcaggaccacaa	CRISPR spacer
taagggtgacaaaggtgatacgggtccagcaggaccacaa	Protospacer
****************************************

11. spacer 6.1|1631200|38|NZ_CP046114|CRT matches to position: 655357-655394, mismatch: 0, identity: 1.0

gcaggtccaaaaggtgatacaggtcagagaggtgaaac	CRISPR spacer
gcaggtccaaaaggtgatacaggtcagagaggtgaaac	Protospacer
**************************************

12. spacer 6.1|1631200|38|NZ_CP046114|CRT matches to position: 1892340-1892377, mismatch: 0, identity: 1.0

gcaggtccaaaaggtgatacaggtcagagaggtgaaac	CRISPR spacer
gcaggtccaaaaggtgatacaggtcagagaggtgaaac	Protospacer
**************************************

13. spacer 6.1|1631200|38|NZ_CP046114|CRT matches to position: 196219-196256, mismatch: 0, identity: 1.0

gcaggtccaaaaggtgatacaggtcagagaggtgaaac	CRISPR spacer
gcaggtccaaaaggtgatacaggtcagagaggtgaaac	Protospacer
**************************************

14. spacer 6.2|1631263|38|NZ_CP046114|CRT matches to position: 1631029-1631066, mismatch: 0, identity: 1.0

aagggtgaaccgggtcctaaaggtgaacaaggtattcc	CRISPR spacer
aagggtgaaccgggtcctaaaggtgaacaaggtattcc	Protospacer
**************************************

15. spacer 4.3|1031265|31|NZ_CP046114|CRT matches to position: 1631145-1631175, mismatch: 1, identity: 0.968

accaggacaagcgggtccagcaggaccacga	CRISPR spacer
accaggagaagcgggtccagcaggaccacga	Protospacer
******* ***********************

16. spacer 4.4|1031319|40|NZ_CP046114|CRT matches to position: 1630965-1631004, mismatch: 1, identity: 0.975

tgcaggtccaaaaggtgatacaggtcagagaggtgaaact	CRISPR spacer
tgcgggtccaaaaggtgatacaggtcagagaggtgaaact	Protospacer
***.************************************

17. spacer 4.6|1031445|40|NZ_CP046114|CRT matches to position: 655446-655485, mismatch: 1, identity: 0.975

taagggtgacaaaggtgatacgggtccagcaggaccacaa	CRISPR spacer
taggggtgacaaaggtgatacgggtccagcaggaccacaa	Protospacer
**.*************************************

18. spacer 4.6|1031445|40|NZ_CP046114|CRT matches to position: 1194791-1194830, mismatch: 1, identity: 0.975

taagggtgacaaaggtgatacgggtccagcaggaccacaa	CRISPR spacer
taagggtgacaaaggtgatacgggtccagcaggatcacaa	Protospacer
**********************************.*****

19. spacer 4.6|1031445|40|NZ_CP046114|CRT matches to position: 1892537-1892576, mismatch: 1, identity: 0.975

taagggtgacaaaggtgatacgggtccagcaggaccacaa	CRISPR spacer
taagggtgacaaaggtgatacgggtccagcaggatcacaa	Protospacer
**********************************.*****

20. spacer 6.1|1631200|38|NZ_CP046114|CRT matches to position: 1630966-1631003, mismatch: 1, identity: 0.974

gcaggtccaaaaggtgatacaggtcagagaggtgaaac	CRISPR spacer
gcgggtccaaaaggtgatacaggtcagagaggtgaaac	Protospacer
**.***********************************

21. spacer 6.2|1631263|38|NZ_CP046114|CRT matches to position: 1410962-1410999, mismatch: 1, identity: 0.974

aagggtgaaccgggtcctaaaggtgaacaaggtattcc	CRISPR spacer
aagggtgaaccgggtcctaaaggtgaacaaggtcttcc	Protospacer
********************************* ****

22. spacer 6.3|1631326|38|NZ_CP046114|CRT matches to position: 1410899-1410936, mismatch: 1, identity: 0.974

aagggtgacaaaggtgatacgggtccagcgggaccaca	CRISPR spacer
aagggtgacaaaggtgatacgggtccagcaggaccaca	Protospacer
*****************************.********

23. spacer 4.3|1031265|31|NZ_CP046114|CRT matches to position: 655302-655332, mismatch: 2, identity: 0.935

accaggacaagcgggtccagcaggaccacga	CRISPR spacer
accaggacaagcgggtccaactggaccacga	Protospacer
*******************.* *********

24. spacer 6.3|1631326|38|NZ_CP046114|CRT matches to position: 196030-196067, mismatch: 2, identity: 0.947

aagggtgacaaaggtgatacgggtccagcgggaccaca	CRISPR spacer
aagggtgacaaaggtgatacgggtccaacgggatcaca	Protospacer
***************************.*****.****

25. spacer 6.3|1631326|38|NZ_CP046114|CRT matches to position: 1194792-1194829, mismatch: 2, identity: 0.947

aagggtgacaaaggtgatacgggtccagcgggaccaca	CRISPR spacer
aagggtgacaaaggtgatacgggtccagcaggatcaca	Protospacer
*****************************.***.****

26. spacer 6.3|1631326|38|NZ_CP046114|CRT matches to position: 1892538-1892575, mismatch: 2, identity: 0.947

aagggtgacaaaggtgatacgggtccagcgggaccaca	CRISPR spacer
aagggtgacaaaggtgatacgggtccagcaggatcaca	Protospacer
*****************************.***.****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046114_4 4.3|1031265|31|NZ_CP046114|CRT 1031265-1031295 31 NC_014811 Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence 202275-202305 7 0.774
NZ_CP046114_4 4.3|1031265|31|NZ_CP046114|CRT 1031265-1031295 31 CP006880 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence 2289465-2289495 7 0.774
NZ_CP046114_4 4.3|1031265|31|NZ_CP046114|CRT 1031265-1031295 31 MH045567 Microbacterium phage Elva, complete genome 980-1010 7 0.774
NZ_CP046114_4 4.3|1031265|31|NZ_CP046114|CRT 1031265-1031295 31 NZ_CP035092 Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence 159389-159419 8 0.742
NZ_CP046114_4 4.3|1031265|31|NZ_CP046114|CRT 1031265-1031295 31 NC_008688 Paracoccus denitrificans PD1222 plasmid 1, complete sequence 406736-406766 8 0.742
NZ_CP046114_4 4.3|1031265|31|NZ_CP046114|CRT 1031265-1031295 31 NZ_CP010864 Marinovum algicola DG 898 plasmid pMaD9, complete sequence 29051-29081 8 0.742
NZ_CP046114_6 6.2|1631263|38|NZ_CP046114|CRT 1631263-1631300 38 MT774376 CrAssphage cr55_1, complete genome 95723-95760 9 0.763
NZ_CP046114_6 6.2|1631263|38|NZ_CP046114|CRT 1631263-1631300 38 MT774380 CrAssphage cr1_1, complete genome 20-57 9 0.763
NZ_CP046114_4 4.5|1031382|40|NZ_CP046114|CRT 1031382-1031421 40 MT774376 CrAssphage cr55_1, complete genome 95722-95761 11 0.725

1. spacer 4.3|1031265|31|NZ_CP046114|CRT matches to NC_014811 (Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence) position: , mismatch: 7, identity: 0.774

accaggacaagcgggtccagcaggac-cacga	CRISPR spacer
gtcaggacgagcgtgtccagcaggacatatg-	Protospacer
..******.**** ************ .*.* 

2. spacer 4.3|1031265|31|NZ_CP046114|CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 7, identity: 0.774

accaggacaagcgggtccagcaggaccacga	CRISPR spacer
accaggacaagcgcgaccagcagcgtcgaga	Protospacer
************* * ******* ..*. **

3. spacer 4.3|1031265|31|NZ_CP046114|CRT matches to MH045567 (Microbacterium phage Elva, complete genome) position: , mismatch: 7, identity: 0.774

accaggacaagcgggtccagcaggaccacga	CRISPR spacer
accaggcgaagcgggtccagcagaaggagta	Protospacer
******  ***************.*  *  *

4. spacer 4.3|1031265|31|NZ_CP046114|CRT matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

accaggacaagcgggtccagcaggaccacga	CRISPR spacer
gtcggtgaaagcgggtccggcaagaccacga	Protospacer
..*.* . **********.***.********

5. spacer 4.3|1031265|31|NZ_CP046114|CRT matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.742

accaggacaagcgggtccagcaggaccacga	CRISPR spacer
gtcggtgaaagcgggtccggcaagaccacga	Protospacer
..*.* . **********.***.********

6. spacer 4.3|1031265|31|NZ_CP046114|CRT matches to NZ_CP010864 (Marinovum algicola DG 898 plasmid pMaD9, complete sequence) position: , mismatch: 8, identity: 0.742

accaggacaagcgggtccagcaggaccacga	CRISPR spacer
gccaggacatccgggtccagcaggttccagt	Protospacer
.********  ************* .*  * 

7. spacer 6.2|1631263|38|NZ_CP046114|CRT matches to MT774376 (CrAssphage cr55_1, complete genome) position: , mismatch: 9, identity: 0.763

aagggtgaaccgggtcctaaaggtgaacaaggtattcc	CRISPR spacer
aagggggaacctggtcctaaaggtgaaccgggagctga	Protospacer
***** ***** **************** .** ..*  

8. spacer 6.2|1631263|38|NZ_CP046114|CRT matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 9, identity: 0.763

aagggtgaaccgggtcctaaaggtgaacaaggtattcc	CRISPR spacer
cagggagaacctggtcctaaaggtgaaccgggagaacc	Protospacer
 **** ***** **************** .** .  **

9. spacer 4.5|1031382|40|NZ_CP046114|CRT matches to MT774376 (CrAssphage cr55_1, complete genome) position: , mismatch: 11, identity: 0.725

aaagggtgaaccgggtcctaaaggtgaacaaggtattcca	CRISPR spacer
taagggggaacctggtcctaaaggtgaaccgggagctgat	Protospacer
 ***** ***** **************** .** ..*   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 541386 : 657886 115 Mannheimia_phage(22.92%) protease,transposase,portal,integrase,terminase,tRNA,tail attL 578592:578641|attR 613845:613894
DBSCAN-SWA_2 735144 : 785886 52 Pseudomonas_phage(13.33%) terminase,protease,tRNA,transposase NA
DBSCAN-SWA_3 868159 : 877957 9 Mollivirus(12.5%) tRNA NA
DBSCAN-SWA_4 934805 : 974965 56 Acinetobacter_phage(20.0%) terminase,plate,transposase NA
DBSCAN-SWA_5 978195 : 982611 8 Mannheimia_phage(33.33%) NA NA
DBSCAN-SWA_6 988307 : 1016976 41 Mannheimia_phage(66.67%) terminase,tail,capsid NA
DBSCAN-SWA_7 1146620 : 1187090 61 Mannheimia_phage(65.12%) terminase,tail NA
DBSCAN-SWA_8 1218718 : 1232520 10 Bacillus_virus(12.5%) NA NA
DBSCAN-SWA_9 1784288 : 1893975 94 uncultured_Caudovirales_phage(22.73%) head,protease,transposase,portal,integrase,terminase,tRNA,tail attL 1831520:1831579|attR 1893476:1893540
DBSCAN-SWA_10 1997472 : 2113809 107 Haemophilus_phage(14.89%) plate,transposase,terminase,tRNA,tail NA
DBSCAN-SWA_11 2117780 : 2169858 60 Haemophilus_phage(84.62%) head,plate,protease,transposase,integrase,terminase,tail attL 2139200:2139222|attR 2178498:2178520
DBSCAN-SWA_12 2177211 : 2222407 50 Vibrio_phage(28.57%) transposase NA
DBSCAN-SWA_13 2231094 : 2300323 59 Shigella_phage(12.5%) integrase,tRNA,transposase attL 2222305:2222364|attR 2273391:2273531
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP046114.1|WP_005710423.1|1789431_1789806_+|Soluble-cytochrome-b562 1789431_1789806_+ 124 aa aa NA NA NA 1784288-1893975 yes