CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP052757	Cellulosimicrobium sp. BI34T chromosome, complete genome	1 crisprs	csa3,PD-DExK,WYL,DEDDh,cas3,DinG	0	0	1	0
NZ_CP052758	Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence	1 crisprs	c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5	1	8	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP052757_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052757_1

3215294-3215397

Orphan

Consensus_repeat	Method
GCGAAGGGGTTGTTGCCCGGGCGCGGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP052757_1

>merge|NZ_CP052757|1|3215294-3215397|CRISPRCasFinder
GCGAAGGGGTTGTTGCCCGGGCGCGGGGCACCCGGACGCGGACCGCCGCCCTGCCGGGGCATGCCCTGGCTGGAGGCGAACGGGTTGTTGCCCGGGCGCGGGGC

>NZ_CP052757|1|1|3215294-3215397|CRISPRCasFinder
GCGAAGGGGTTGTTGCCCGGGCGCGGGGC	ACCCGGACGCGGACCGCCGCCCTGCCGGGGCATGCCCTGGCTGGAG
GCGAACGGGTTGTTGCCCGGGCGCGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052757.1\|WP_154798910.1\|3217512_3218127_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP052757.1\|WP_154798914.1\|3221974_3222898_+\|Fpg/Nei-family-DNA-glycosylase	unknown	unknown	gnl\|CDD\|223344
NZ_CP052757.1\|WP_154798913.1\|3220072_3221941_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP052757.1\|WP_168731879.1\|3211412_3212405_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NZ_CP052757.1\|WP_154798915.1\|3225174_3226485_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100084
NZ_CP052757.1\|WP_154800289.1\|3207192_3207930_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP052757.1\|WP_154798909.1\|3216448_3217510_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP052757.1\|WP_154798912.1\|3219608_3219824_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234743
NZ_CP052757.1\|WP_154798908.1\|3216043_3216424_-\|DUF448-domain-containing-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP052757.1\|WP_154798904.1\|3203798_3204437_-\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP052757.1\|WP_168731878.1\|3210272_3211307_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP052757.1\|WP_154798903.1\|3201603_3203562_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188651
NZ_CP052757.1\|WP_168731881.1\|3222916_3223879_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379120
NZ_CP052757.1\|WP_154798911.1\|3218277_3219402_+\|DUF4439-domain-containing-protein	unknown	unknown	gnl\|CDD\|373114
NZ_CP052757.1\|WP_168732297.1\|3204433_3205690_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP052757.1\|WP_021482273.1\|3223886_3225026_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_CP052757.1\|WP_154798905.1\|3207988_3209575_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052757.1\|WP_168731877.1\|3209577_3210270_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP052757.1\|WP_168731876.1\|3205986_3207108_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NZ_CP052757.1\|WP_154798906.1\|3212409_3212874_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787

Protein	Function_ID	Function_description	E-value
NZ_CP052757.1\|WP_154798910.1\|3217512_3218127_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	9.46919e-37
NZ_CP052757.1\|WP_154798913.1\|3220072_3221941_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP052757.1\|WP_168731879.1\|3211412_3212405_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	7.13587e-147
NZ_CP052757.1\|WP_154798915.1\|3225174_3226485_-\|site-2-protease-family-protein	gnl\|CDD\|100084	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.	8.11685e-44
NZ_CP052757.1\|WP_154800289.1\|3207192_3207930_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.73843e-74
NZ_CP052757.1\|WP_154798914.1\|3221974_3222898_+\|Fpg/Nei-family-DNA-glycosylase	gnl\|CDD\|223344	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].	1.32741e-50
NZ_CP052757.1\|WP_154798912.1\|3219608_3219824_+\|hypothetical-protein	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0.00955075
NZ_CP052757.1\|WP_154798908.1\|3216043_3216424_-\|DUF448-domain-containing-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	4.58517e-18
NZ_CP052757.1\|WP_154798904.1\|3203798_3204437_-\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.76218e-60
NZ_CP052757.1\|WP_168731878.1\|3210272_3211307_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.29857e-126
NZ_CP052757.1\|WP_154798903.1\|3201603_3203562_-\|hypothetical-protein	gnl\|CDD\|188651	cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial family of heme peroxidases. Animal heme peroxidases are diverse family of enzymes which are not restricted to metazoans; members are also found in fungi, and plants, and in bacteria - like this family of uncharacterized proteins.	5.03481e-155
NZ_CP052757.1\|WP_168731881.1\|3222916_3223879_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379120	pfam13312, DUF4081, Domain of unknown function (DUF4081). This domain is often found N-terminal to the GNAT acetyltransferase domain, pfam00583 and FR47, pfam08445.	2.93955e-35
NZ_CP052757.1\|WP_154798911.1\|3218277_3219402_+\|DUF4439-domain-containing-protein	gnl\|CDD\|373114	pfam14530, DUF4439, Domain of unknown function (DUF4439). This domain has a ferritin-like fold.	1.03706e-09
NZ_CP052757.1\|WP_168732297.1\|3204433_3205690_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.4866e-46
NZ_CP052757.1\|WP_021482273.1\|3223886_3225026_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP052757.1\|WP_154798909.1\|3216448_3217510_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	0
NZ_CP052757.1\|WP_168731877.1\|3209577_3210270_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	4.16811e-49
NZ_CP052757.1\|WP_168731876.1\|3205986_3207108_+\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	3.02601e-10
NZ_CP052757.1\|WP_154798906.1\|3212409_3212874_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	6.62996e-47

>NZ_CP052757.1|WP_154798906.1|3212409_3212874_-|30S-ribosome-binding-factor-RbfA
MVDHPRARKLADRIKEIVAQMLDTRIKDPRLGFVTVTDVRVTGDLQNASVFYTVYGTDEERAGTAAALDSAKGLIRSEVGKQTGIRLTPTIEFHLDSVPETAAHLDAALVEARRRDAELAALREGKAFAGDADPYRSSEDAEADAGSDAGDDRG
>NZ_CP052757.1|WP_168731879.1|3211412_3212405_-|tRNA-pseudouridine(55)-synthase-TruB
MGGRPPATDRPARRPVAPDGLVVVDKPGGWTSHDVVGRGRRLAGTRKVGHAGTLDPMATGVLVLGVGRATKLLTYVVGADKDYDATIRLGAATTTDDAEGEVVARADASGVGRADLDRAIADLTGEILQVPSTVSAIKVDGKRAYARARAGEDVALAARPVVVSRFEVLDVRPVRPGEAAHEPVLPDDASPALDVDVAVTVSSGTYVRALARDLGAALGVGGHLTALRRTRVGGYGLDVASTLEELEAQADRDGVLATLPLAAAARATFPVRDLTPQEATALSYGQWIPATGTPGTTAAVSPEGELVALVEDTRRGGADLAKPVLVLAPA
>NZ_CP052757.1|WP_168731878.1|3210272_3211307_-|bifunctional-riboflavin-kinase/FAD-synthetase
MHLWTDLSQVPPGFGPSVVTIGNFDGVHRGHAQVLGRIVDLARARDARAVAVTFHPHPAVVHRPESAPELITGIADRVELLAATGLDAVLLVEYTLEFARQTPEEFVRTFLVDGLRVGTVVVGHDVRFGRDNAGTIETMVELGSRFGFEVVAIDDVGQHQGVPVTDEATPGDSQVRWSSTGVRALLAAGDVREAARILGRSHSVRGTVVHGDARGRELGFPTANLGAISGMVPADGVYAGWLERPQLAGADPEHADVRLPAAISIGTNPTFDGVERRVEAYVLDRSDLDLYDEDVVLELVERLRPTLRFDGIDPLVAQMHDDVVRAREILAGAGGEPVATTPGA
>NZ_CP052757.1|WP_168731877.1|3209577_3210270_-|ATP-binding-cassette-domain-containing-protein
MAAQAPVLEARALRVGYADVAVCAPVDLTVRPGELVVVIGANGSGKSTLLRTVLGLQPPLGGTVRAFGRDVDERERGFRARVAGVLDDDAFFPALTVREHLVLVARGHGVVGAGAAVDELLDRFGIAEQGRSLPSALSSGQRRRFLLASGLVRPRELLVLDEPEQRLDPGMRERLAGLLVDDARSGVAVVLATHDPELVARTGARGLLVGDGACVALDPADTHDALLAVR
>NZ_CP052757.1|WP_154798905.1|3207988_3209575_-|hypothetical-protein
MTDPDGPPAATHPVEPGTQTVGALRTDPDELLTGRELRRLTARAAAARADAGPGEIVVDVAYAVVSVALATGWVVGLASMLRSTLDPGATAGTPVLGPGAVQALGASALLAFLTGTAVRLGPVGAGSGGVRWWVPTPADRRGLVSPSFVRAVLLGGVLGAVGTAAVSVAAGLDVAPALRAALTGGALGLLLVAVAGLVQPSPRASGALARASDVAVAAVPVAGLALVVAGRSGLPALAAPPLVALGLLAVAAVLVLRWWRDLESLGATVLRAQSSVADQVGGAVLSFDTRDLGRALRRAGAARVRVRRPHRFRAVRGAFGAVVAADLVLLGRSPSALAQLVGLGALTVVAQQVPGLGSGFGLFAVLVAVGLGAAVLGAEGARTAEMAPVVDTLVPLAARWTRLARAVVPTLTAAVCLLAGSAPLVVASGDARWAALATLTAVVQGAAAVRSAYREPPNWGGPLLATPAGGVPTGAAAVLRKGPDVAVLGAVPLGVALLVGTAGWGAVLAQALVAVVALAVATHVRAAR
>NZ_CP052757.1|WP_154800289.1|3207192_3207930_+|ATP-binding-cassette-domain-containing-protein
MLDRIRLAYPDGDGVLVAVDDVSLTVPSGTTTALLGPSGAGKSSLLAVAATLTPPTSGVVRVGEDVVAAPLSGPGAPATGRGARRRARRAADRAAALRRERIGIVFQQPQLVASLTVLEQLELMSHLRGRPAASRRAHALALLDAVGVADRADRRPEHLSGGQRQRVAIARALMNDPEVLLVDEPTSALDHERGVQVVELVVRLARELDAATLLVTHDEATLDPVDARVHMADGRLVAAPAPARV
>NZ_CP052757.1|WP_168731876.1|3205986_3207108_+|ABC-transporter-permease
MFLALRDLRHARGRFALMIAVVALITFLVAFLAALTAGLGRASTSAVTGLPVDRVAFSPPAEGASPTFTESEVTAAQQEAWTDLPGVRAAEPLGVATVRASGESTAAVTAFGVRPGSGLVPGAGGGDADVSAGTVVLSRGAADALGADVGDRVGAGPLDLRVAAVADVEADFAHTPVVWVSLDDWQAVGARGGTAAGDAQEGPTATVVALRFGDDPPSADALVATDAEVGTVTATPREARSAISSFTAENLSLTLMQVFLLAISALVVGAFFTVWTIQRAGDVAVLRALGASTRYLLRDAIGQAGVVLAVGVGLGTALATGAGLLAARVMPVVVDLSTTLAPAVVLVALGGIGAVLAVTRVARVDPHAALAAR
>NZ_CP052757.1|WP_168732297.1|3204433_3205690_-|sensor-histidine-kinase
MPAATRWLRRGLDVLLVGLLALSLAVALTSGTVRAVVALGVGAALLALYVLGRRRLPLPDDVRAPRGAWWPAGAWVTGLVVLWVALCLVSVTAVWVAFPLMFVAMHVLGPRRGPVAVAAVVLLVVAVMWAATESVAVPFVLGPAIGGAVAVVVVLALEAVVRESQERQRTLDELVRTRDELATSERERAVAGERERLAREIHDTLAQGFSSAELLLRAARTALDAGDVGTARGYVEQTREVARHNLAEARRVVRALAPADLASSNLVDALRRVAARTSGRATGAGPEVVVQVSGDPVPLPTDVETALLRVAQSALANVERHADASRAAVTLSFLAGAAPGEEAVALDVVDDGRGFDPDGLAEPAEDGPGGTVGGFGLVAMRARLAELGGTLSVESAPGAGTAVAAWVPLARAEDEEGR
>NZ_CP052757.1|WP_154798904.1|3203798_3204437_-|response-regulator
MTGPSVDVVLADDHPVVRTGLRAVLEAEPDVRVVAEVGSAEELLARLRAGLRADVVLLDLQFGPGRLGGVDAVREIVATDGPAVLVVTTYDADADILAAVEAGARGYLLKDAPTHELVAAVRAAAAGEVALGPAVQRRLLGRLRSPGTALTARELEVLALVAEGRTNDEIARELFLSRATVKTHLVHVYDKLGAPSRTAAVAEARRRGLLRG
>NZ_CP052757.1|WP_154798903.1|3201603_3203562_-|hypothetical-protein
MEAQQHTAAPGAGTVAETVVDDVAPDAVDQASTPIGRTVRSVGHGSAVAPDGPATDAVVDPAESNAPLLPAAEAAVARDHALHRYDSTTAFDYLFPELAESFPAFHLPVDDGATASTVEALKALGASMVARPVVPQGQPPRDLNSNVPAVYTYWGQFIDHDITLNTNGPDTTSGRDGDQALGDVDADPFQVFAPRVVVRSLHNGRHPALNLDSLYGSGPVFEGEPGLGSTRSEASYVPGSAKLRLGRISTEALVIPGGPSFSLVEPGGDAQRDLPRDAQGAPLVPDGRNDENLVVAQFHLAMIRFHNAVVDWVDEFDPWTRHTGGERGVFERASQLVRWHYQWLVVNDYLRTLTKPGVLDATLLRDTSFFRPRYPVSMPLEFAVAAFRFGHSMIRDTYDYNVNFTGPPPRNASLVQLFEFTGNGGSLRPGPAGNPALPSNWPIEWARFVDKGDPSPFRAAEKIDTFLAPSLGDLVKEGALPPEPPAHTQAQLVASALQRQLAQRNLLRGYMLALPTGEAVATSLGVTPLTPAQLEDRAGEDVKQALATLRDGDHGGTPLWYYVLKEAELQGDGSFLGEVGSRVLAETFVYLLRQDDTSYVRASNHWTPAQGVHFEDGSLVLTLPDLLRFAGVLPDAAGRFRADGTAGHDGAP
>NZ_CP052757.1|WP_154798908.1|3216043_3216424_-|DUF448-domain-containing-protein
MTGRRGRLSSTGPRARTSTMPQDTTTRPVPTDSGPVRTCVGCRERDLRSALLRLVLDRSGASTDEPRLVVDAGRSLPGRGAWLHASTRCLETAERRRAVPRALHVAGPLDLAAVRGVIEARPGEHG
>NZ_CP052757.1|WP_154798909.1|3216448_3217510_-|transcription-termination/antitermination-protein-NusA
MDVDMSALRLLERERDISLDVLVAAIEQALLSAYHRTPDAYTRARVELDRKTGHVTVWAREELPAPETDDEDAPRGPVEHGPEFDHTPADFGRIATSTARQVIVQRLRDAEDDQILGTFRGKEGEVLAGVIQQGRDPRVVLVDVGGTEAVLPPHEQVPTEEYVHGERLRAYVLEVARGMKGAQITLSRTHPNLVRKLFELEVPEVADGSVEITAIAREAGHRTKVAVRSRVPGLGAKGACIGPMGSRVRAVMAELHGEKIDIVDHSDDPAQFVANALSPARVSSVTVVDEVARAARVVVPDFQLSLAIGKEGQNARLAAKLTGWRIDIRSDEGGAPSAGSDGGAPAGPRAEGR
>NZ_CP052757.1|WP_154798910.1|3217512_3218127_-|ribosome-maturation-factor-RimP
MAGQAGGQSGRAPGGDAATHALRESVREAIDPVVRGAGLHLEDVTVSRAGARSVVRVVLDLPDDVEGNLDLDTVAEATRPISTALDAVDPLHGAYTLEVSTPGTDRPLTEPRHFRRARGRLVRLVLADGGTVEGRLRTGSEVDPDLVLDVPGKRGVVTERVVPLAAVVRGQVQVELKRALEADLPELDDTDGSTDETTAHDEEA
>NZ_CP052757.1|WP_154798911.1|3218277_3219402_+|DUF4439-domain-containing-protein
MTPHATAAAAATRARRSRTARRGARLLAALSVLATGALAAGCGVRLETPPPTELSPDAVEVLRAAAVDDALAVADLVADVTPGVTDPTTLAALEEVAAFAEQHADALGGVYDSGLADLDLPGDDDVAPSPPPAGDEAAADDETSGATGTDGGGTEDDATEAPTTGDDVTTTDDVVVALVEAAQRTGASADASTDAGLARLLASVAASEHVSARRLAALTGSTAADGLVTTAAPVDQAPAGIGAADLATLVGSEDAAGYAYEVRAAQSEGDARTAAVARAAEHRARGQAWALAAGTDGTAQDPRRVAYVLPDADLADLARQVEAGLAQTYAGLVATAAPTSRAEALTLLVDSWASAVAWGEAPVAFPGLPEQAAG
>NZ_CP052757.1|WP_154798912.1|3219608_3219824_+|hypothetical-protein
MSVIEKWISVVCPDCGGPARARVLHVIAWGAIPTSAIPHHVSIVCEHLCTISGFDAKETVRVCPHCRVYIG
>NZ_CP052757.1|WP_154798913.1|3220072_3221941_-|proline--tRNA-ligase
MSSVTSGAPAAASTRVRGADLLRLSTLFVRTLREDPADAEVASHKLLVRAGYIRRAAPGIYTWLPLGLRVLRKVEDVVREEMAAAGAQEVHFPALLPKEPYEATGRWSEYGPNIFRLKDRKEGDYLLAPTHEEMFTLLVKDLYSSYKDLPLTIYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDTTDEGLERSYEAQRAAYRRIFDRLGLEYVIVAATSGAMGGSRSEEFLTPTPIGEDTFVRSPGGYAANVEAVVTPVPEAVDYADAPAAHVEDTPDTPTIDSLVALSNERFPRADRAWTAADTLKNVVLALTHPDGRREVVVVGLPGDREVDLKRVGAAFEPAEVEPATDADFAAHPELVKGYIGPQALGPNVRRDVPADVAEGEEPERHSVRYLLDPRVVAGTRWITGANEPGRHVFDLVAERDFAADGTVEAAEVRAGDLAPDGSGPLELARGIEIGHIFALGRKYAQALGLTVLDENGKQVVVTMGSYGIGVTRVLAALAEANHDDAGLAWPAHVAPAHVHVVATGKDASVFDAAERLATELAARGVEVIYDDRPKAAPGVKFKDAELLGVPLLLVVGRGLADGVVEVRPRVGEAVQVAVGDAVEHVTAQVAELLG
>NZ_CP052757.1|WP_154798914.1|3221974_3222898_+|Fpg/Nei-family-DNA-glycosylase
MPELPEVEALVRFLDDRATGRTVVAADVAQIAALKTFDPPVGALVGRVVTGARRHGKWLDLVLAQPVGGPPSPGPDDEVHLVVHLARAGWLRWSEKAPTTPVRPRLGGSGGGKAAVLALRVRFDDGSGFDLTEAGTRKRLAVHVVRHPEEVRAIETLGIEPFDPGFTPEALGALMAARNQQVKGLLRDQSSIAGIGNAYSDDILHAARTSPFKLTRSFTPDEVARVHAAVGEVLAEAVAASSGKPAAELKDAKRAGMRVHGRTGLPCPVCGDTVREVSFADRSLQYCATCQTGGQVLADRRMSRLLK
>NZ_CP052757.1|WP_168731881.1|3222916_3223879_-|GNAT-family-N-acetyltransferase
MARWRPSVPALRPRTRGGAGDTEHARGRVLVDADVPEALAVCAGDPVASTLAAARLAVAQHAGLHAAGGQAWGFPAVGPLEAVCWAGANLVPVVPASLEPDRTRAAVAAFAVLARHAGRRSSSVVGERDAVLALWELLAPHWPSPREIRANQPSLAIDRDPDVEPDPGVRRSVPAEVPVVLPACVRMFTEEVGYSPVEGGGRAYEERVRSLVLAGRSFVRLAAGDGGPHVVFKAELGAVTPLVAQVQGVWVDPRYRGQGLAAPGMAAVVQLARRGTPAEAARRLAPPVVSLYVNDYNTRALATYRRVGFEQVGTYATVLF
>NZ_CP052757.1|WP_021482273.1|3223886_3225026_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MPAAPPPVLAPRRKSRKIKVGKVDVGGDAPISVQSMTTTPTTDINATLQQIAELTASGCDIVRVAVPSADDALALPAIAKKSQIPVIADIHFQPKYVFAAIDAGCAAVRVNPGNIRKFDDQVKEIAKAASDAGVSLRIGVNAGSLDPRLLAKYGKATPEALVESAVWEASLFEEHGFHDFKISVKHNDPVVMVRAYELLAEAGDWPLHLGVTEAGPAFQGTIKSATAFGALLSKGIGDTIRVSLSAPPVEEVKVGNQILQALNLRPRKLEIVSCPSCGRAQVDVYTLAEKVTAGLEGMEVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIFVKGEVVKTVPESLIVETLIEEALRIAETMTPENDAQAGPPVVTVG
>NZ_CP052757.1|WP_154798915.1|3225174_3226485_-|site-2-protease-family-protein
MATLIGILVIVVGIVVSIALHEVGHMVPAKRFGVRVSQYMVGFGPTLWSRTKGETEYGFKAIPLGGYVRLVGMYPPAPAGARPRGNGFFSQVVADARDASTEEIRPGEEHRAFYNLSAPKKVVVMLGGPFMNLLIAFVLMAIVCVGIGLPAVTTTVGSVSACVPSVVATEQEECAATADPSPAAAAGLEPGDTVVSFDGEEVTSWDQLSGMIRGSAGQATPVVVERDGEQVDLTITPVDVERQVVAEDGTPVVDDSGDPVTEPAGFVGFTPTVEREPTGIGVAAEATWQQVSGTAGIIVTLPVKVYEAAEAAFTDAPRGQDSVMSVVGVGRVAVDVAGAESPILDRVVTMLLLLAALNVALFVFNLIPLLPLDGGHVVNALYEGAKRTVARVRGLPRPGPADLARMMPVAYVMFVVLVGVGALLILADIIDPVRLT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

69224 : 94260

Synechococcus_phage(33.33%)

holin,plate,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168731344.1\|69224_69773_-\|tail	phage tail protein	NA	NA	NA	NA
WP_168731345.1\|69769_71713_-\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_168731346.1\|71714_72152_-	GPW/gp25 family protein	A0A0E3F3H3	Synechococcus_phage	2.4e-09	33.3
WP_168731347.1\|72199_74050_-	VgrG-related protein	NA	NA	NA	NA
WP_154797117.1\|74039_74822_-	peptidase M23	NA	NA	NA	NA
WP_154797118.1\|74829_75282_-\|tail	phage tail protein	NA	NA	NA	NA
WP_154797119.1\|75278_75890_-	hypothetical protein	NA	NA	NA	NA
WP_171445683.1\|77508_78126_+	hypothetical protein	NA	NA	NA	NA
WP_154797121.1\|78390_78549_-	hypothetical protein	NA	NA	NA	NA
WP_171445725.1\|78545_78941_-	hypothetical protein	NA	NA	NA	NA
WP_154797122.1\|79003_79450_-\|tail	phage tail protein	NA	NA	NA	NA
WP_154797123.1\|79515_81081_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A1J0GW47	Streptomyces_phage	1.3e-33	36.7
WP_154797124.1\|81262_81502_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_154799660.1\|81543_81951_+	PIN domain-containing protein	NA	NA	NA	NA
WP_154797125.1\|81990_83517_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_154797126.1\|83513_84491_-	hypothetical protein	NA	NA	NA	NA
WP_168731348.1\|84598_86647_-	AAA family ATPase	A0A0R6PCP6	Moraxella_phage	4.0e-22	31.7
WP_154797127.1\|86643_87258_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_154797128.1\|87262_91168_-	PD40 domain-containing protein	NA	NA	NA	NA
WP_154797129.1\|91404_92037_-	DNA-binding response regulator	NA	NA	NA	NA
WP_154797130.1\|92206_93547_+	hypothetical protein	NA	NA	NA	NA
WP_154797131.1\|93546_93855_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_154797132.1\|93870_94260_+\|holin	phage holin family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP052758

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP052758_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP052758_1

112545-112817

TypeV-U4

Consensus_repeat	Method
GTCCGGCCCGTACGCGCAGGGGTGGTCCC	PILER-CR
GTCCGGCCCGTACGCGCAGGGGTGGTCC	CRISPRCasFinder
GTCCGGCCCGTACGCGCAGGGGTGGTCCC	CRT

4 spacers

c2c9_V-U4

The CRISPR arrays of NZ_CP052758_1

>merge|NZ_CP052758|1|112545-112817|PILER-CR,CRISPRCasFinder,CRT
GTCCGGCCCGTACGCGCAGGGGTGGTCCCGCAACGAGCCACGGCCCGTCGGGGTACTCGTAGTCCGGCCCGTACGCGCAGGGGTGGTCCGGAATCCAGCCAGGTCAACCGCTCGACGCCGAGGTCCGGCCCGTACGCGCAGGGGTGGTCCCCCCTACCGGCAGTCCATGGCGGCGCTCCTGGAGTCCGGGCCGTACGCGCAGGGGTGGTCCCAGGGTGTAGGGGCCGCGGGCTTCGGGCCGGCAGTCCGGCCCGTACGCGCAGGGTGGTCCCC

>NZ_CP052758|1|1|112545-112756|PILER-CR
GTCCGGCCCGTACGCGCAGGGGTGGTCCC	GCAACGAGCCACGGCCCGTCGGGGTACTCGTA
GTCCGGCCCGTACGCGCAGGGGTGGTCCG	GAATCCAGCCAGGTCAACCGCTCGACGCCGAG
GTCCGGCCCGTACGCGCAGGGGTGGTCCC	CCCTACCGGCAGTCCATGGCGGCGCTCCTGGA
GTCCGGGCCGTACGCGCAGGGGTGGTCCC

>NZ_CP052758|1|1|112545-112816|CRISPRCasFinder
GTCCGGCCCGTACGCGCAGGGGTGGTCC	CGCAACGAGCCACGGCCCGTCGGGGTACTCGTA
GTCCGGCCCGTACGCGCAGGGGTGGTCC	GGAATCCAGCCAGGTCAACCGCTCGACGCCGAG
GTCCGGCCCGTACGCGCAGGGGTGGTCC	CCCCTACCGGCAGTCCATGGCGGCGCTCCTGGA
GTCCGGGCCGTACGCGCAGGGGTGGTCC	CAGGGTGTAGGGGCCGCGGGCTTCGGGCCGGCA
GTCCGGCCCGTACGCGCAGGGTGGTCCC

>NZ_CP052758|1|1|112545-112817|CRT
GTCCGGCCCGTACGCGCAGGGGTGGTCCC	GCAACGAGCCACGGCCCGTCGGGGTACTCGTA
GTCCGGCCCGTACGCGCAGGGGTGGTCCG	GAATCCAGCCAGGTCAACCGCTCGACGCCGAG
GTCCGGCCCGTACGCGCAGGGGTGGTCCC	CCCTACCGGCAGTCCATGGCGGCGCTCCTGGA
GTCCGGGCCGTACGCGCAGGGGTGGTCCC	AGGGTGTAGGGGCCGCGGGCTTCGGGCCGGCA
GTCCGGCCCGTACGCGCAGGGTGGTCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP052758.1\|WP_154800710.1\|119170_119371_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052758.1\|WP_154800708.1\|117877_118318_-\|pilus-assembly-protein	unknown	unknown	unknown
NZ_CP052758.1\|WP_154800701.1\|108693_108924_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052758.1\|WP_154800704.1\|109641_110823_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379062
NZ_CP052758.1\|WP_154800712.1\|120354_121218_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP052758.1\|WP_154800699.1\|107240_108086_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198393
NZ_CP052758.1\|WP_154800700.1\|108112_108580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052758.1\|WP_154800713.1\|121214_122813_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|227297
NZ_CP052758.1\|WP_154800709.1\|118754_119156_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|377921
NZ_CP052758.1\|WP_168732374.1\|119452_120355_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052758.1\|WP_154800707.1\|113864_114479_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225951
NZ_CP052758.1\|WP_154800703.1\|109264_109555_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052758.1\|WP_154800706.1\|112950_113871_-\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|240291
NZ_CP052758.1\|WP_154800697.1\|105876_106164_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|128645
NZ_CP052758.1\|WP_154800698.1\|106160_107069_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376986
NZ_CP052758.1\|WP_154800702.1\|108920_109121_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP052758.1\|WP_168732371.1\|114491_117881_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP052758.1\|WP_154800757.1\|118317_118752_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|377921
NZ_CP052758.1\|WP_154800705.1\|110861_112496_+\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NZ_CP052758.1\|WP_154800696.1\|105419_105845_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP052758.1\|WP_154800713.1\|121214_122813_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	3.71875e-50
NZ_CP052758.1\|WP_154800704.1\|109641_110823_+\|AAA-family-ATPase	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	2.59444e-09
NZ_CP052758.1\|WP_154800699.1\|107240_108086_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198393	cd10446, GIY-YIG_unchar_1, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria. The family includes a group of uncharacterized bacterial hypothetical proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	4.42356e-44
NZ_CP052758.1\|WP_154800712.1\|120354_121218_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	1.1404e-10
NZ_CP052758.1\|WP_154800698.1\|106160_107069_-\|replication-initiation-protein	gnl\|CDD\|376986	pfam03090, Replicase, Replicase family. This is a family of bacterial plasmid DNA replication initiator proteins. pfam01051 is a similar family. These RepA proteins exist as monomers and dimers in equilibrium: monomers bind directly to repeated DNA sequences and thus activate replication; dimers repress repA transcription by binding an inversely repeated DNA operator. Dimer dissociation can occur spontaneously or be mediated by Hsp70 chaperones.	1.78204e-48
NZ_CP052758.1\|WP_154800709.1\|118754_119156_-\|pilus-assembly-protein	gnl\|CDD\|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	2.07887e-06
NZ_CP052758.1\|WP_154800706.1\|112950_113871_-\|PKD-domain-containing-protein	gnl\|CDD\|240291	PTZ00146, PTZ00146, fibrillarin; Provisional.	6.81532e-08
NZ_CP052758.1\|WP_154800697.1\|105876_106164_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|128645	smart00351, PAX, Paired Box domain.	0.000297315
NZ_CP052758.1\|WP_154800707.1\|113864_114479_-\|hypothetical-protein	gnl\|CDD\|225951	COG3417, FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only].	0.00528393
NZ_CP052758.1\|WP_154800705.1\|110861_112496_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.46058e-34
NZ_CP052758.1\|WP_168732371.1\|114491_117881_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	1.66972e-10
NZ_CP052758.1\|WP_154800757.1\|118317_118752_-\|pilus-assembly-protein	gnl\|CDD\|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	9.47538e-06

>NZ_CP052758.1|WP_154800705.1|110861_112496_+|transposase
MGTEGALTHRVVRVCLDDAALTPDQRTLLDRHAGTARAVWNWGLAARNAQQDALMAHVRAIALEQADGDETAAATFLDDRIWRTATIKAAPDELRRPLRAATLGRAFTAETRDPDSRFAWWATERHGVNRFAVSSSLQSLDAAFDRYYRDTGGHRSARRARPRKDGRPAAWPRFKKRGRATDAFALFNLVVASQDPWRVIDRAHRIKVPSLGSLRVHENTKRLRRLIARGGRPTSARFTRTGGRWYMSVVVALPAPAAGTVLSPAGAPRAAAPTRAQTRAGLVGVDLGVKTLATMSDGTLIANARHGRAAARRLARLQRRAARQQGPRKGIAPSKGWVTTQRAIARLQHDAAARRRGLVHELTKTLAASYAAVAIEDLNVAGMTGTPAARPDPDNPGAFLANGRAAKSGLNKALLDVGFGEFRRQLTYKTPMYGARLLEVARFAPTSKTCSTCGAVRTKLRLDERTYRCEHCGLVIDRDLNAALNIAALGHQALGTSPADAGDTKRRDQKDVDRERSVVLASQDLGPPRSAERATDSSPPTRAA
>NZ_CP052758.1|WP_154800704.1|109641_110823_+|AAA-family-ATPase
MDLVTNPYTPSAGRRPLELAGRDRELDEMRVLVARAQVGTTGRGLVLSGLRGVGKTVLLRELHAIADDAGWLTSEIEGSRLTGAKARSRATLARDLVASARRLRSRTTVLTDKLRSALETIGAFSLKLGVAGVELGVERREGRADTGDLGFDLEELITDAAPALSEQGIGIAVFVDEMQDLDAEMLGALLSAQHRAAQRDIPFYVVGAGLPNLPGVLAESNSYAERQFDYRTIAALSPDEALQALVAPAAARGVTYEQRAAQLLIHVTDGYPYFIQVYGDQAWRLSVGPDTITYTDALEAHAAGTEALDFGFFTSRWERATDAERRFMRAMAQDDGRSVASEVMTRVGMPGTSPGPYRRSLIAKGLIYSPDRGQLAFTVPHMADYISRRLDDD
>NZ_CP052758.1|WP_154800703.1|109264_109555_+|hypothetical-protein
MADESSTSQALLILEALARVLESAEDGLTGIEDAKLHAGYTRAAAEAVMRDAGITAEQRKAAEEWGLNEWVNSLITILYPGEQVEARHAQLLQQQS
>NZ_CP052758.1|WP_154800702.1|108920_109121_-|hypothetical-protein
MVDYDELSAWAESDARQIGRGKRILRGEEGRAYVRELLEQATEGDPEGRALLRKVQAESDPEDATS
>NZ_CP052758.1|WP_154800701.1|108693_108924_-|hypothetical-protein
MSVGQVVQGVWLGVWLVMMLVARIQIRRVMGHVEKVDAGVEDREPGATALIGRARLWAFVALGWAMLHAVVGVLTR
>NZ_CP052758.1|WP_154800700.1|108112_108580_+|hypothetical-protein
MLDTSALPLRELLATSIAISTELRRRGYVRTGTSLAGELMEHVVAAAYDARLEAPINAGWDAVTNDGTRIQVKTRFLEPGARRPFTFKTLDFDIAVIVWINAASFTIDWAREIPRVELEAIVAPHSAGFRLSASRTIAHEADVTSRLRAAFDALA
>NZ_CP052758.1|WP_154800699.1|107240_108086_+|GIY-YIG-nuclease-family-protein
MKSPPVRRGGDIDLGHLLLAAGVELDTTIVIRHTYNPDGLTGPHDLTTQKVHAYTRRQGFRKFPAAPPKHWLIFVTDGGLRSRFLTAYDNRGEVTAERTATHRSFDLEPSDLLTTLRGRLVVQWSKDAVNWVKQGRAAAQFTVLEIADPAEVTFPGFDRLVIDYATLLDVVESSRYRSWQAALASVQAIYLITDSRTGQHYVGKADGGERLLGRWNTYARTGHGGNVALTALAGLDPDHVRDFRFSILRVFGPDTPRVDVDTAEEHFKRALMTREFGLNRN
>NZ_CP052758.1|WP_154800698.1|106160_107069_-|replication-initiation-protein
MTTSAAEDATATTGEQWEQMWLPLFPYSTNDLAAGIYRRPRPIALGHRYIETNPAGMSNLLVVDVDHPDAALRALSSVGSHPLPNAIVSNPRNGHAHAIWTLAEAVTRTEYARRKPLAYAAAVTEGLRRALDGDKAYSGLMTKNPLHDSWEAEWLHTNTWDLAQLEEELGDHMPPPRWREGTKRRGEVVGLGRNCSLFESARHWAYRALRHHFGDPEGLASAIHAEVNARNVEFSEPLPASEARAIAASIHRWITMWADGEAVYGATFVAIQSARGRKGGRKSAETRQARVAARAAAILGES
>NZ_CP052758.1|WP_154800697.1|105876_106164_-|helix-turn-helix-domain-containing-protein
MTTPVRPKRRGTASELARKFGVSERTIRYTVAEDRRVYEARADERRAQIIELHRRGLGVRAIARQLSVSPGLVSTRLKEARDAGVDLSRLDDPAA
>NZ_CP052758.1|WP_154800696.1|105419_105845_-|hypothetical-protein
MTRRKSSWQVLGFGVEFEEGPVEDVDQFRTKLTETARSERRYRAFREWTATFLTSTLALGAGVLTALGLGDSVDFTDQKSALVMVTGFVVAVALLMLVVTVIRFSKRSRARRKRRERASRAALDAWTRHSNMRRRRAALDG
>NZ_CP052758.1|WP_154800706.1|112950_113871_-|PKD-domain-containing-protein
MLRRILTALVSVGLLLALAPAARADAPICIEIDPRTGECKLFGGGGSGGGGGGGGGGSDTGGGGGSGGGGGGGGGGHSSPVIVVNGIECLYAGLADPQPLKTDPVWAGHEDGAIHVCATWPGGGGGGGAIGGGHTIDILFWAAGPPAPAPPDPADLARQAIETMGLSAIDIGVVPEDAPGRIGVVGMPTWMWAQNPGENTIGPITRTASSGGYTVTATARVTRIVWDMGDGTTVTCNGAGTPYADKYGKSSSPTCGHTYTRQGQYPVTATSYWSVEWAGIGETGVINLDFANTTNITMGEAQVLTR
>NZ_CP052758.1|WP_154800707.1|113864_114479_-|hypothetical-protein
MSRTARHAATSVGLVALTALLLMGCDSDPTDPSSTSSPPAPTTSEPTPTETPLTPEEEATAAAEDAITAYFATSDKALQSPGTFNAADFEKVAITSALTDLQNLLVSVQMQDRHQIGETEIVSITSPTVDLTQDLDATPPVVPVVEADVCYDVSELNIVDAEGKSTTPADRAPRGIAHVGVANYEYPEGPWLVAYVDYQEGETC
>NZ_CP052758.1|WP_168732371.1|114491_117881_-|LysM-peptidoglycan-binding-domain-containing-protein
MSTLRRRLAGLVALLGILAIVVGLPVVLLAVGANPFAGLDPSVDGVIDALTSPDDGTLFLALIKLVGWVSWAVLTVSVLLELGSQLRGVRAPRLPGLRLPQNAARSLVGTAMLLFVTVPGLATTATAATAAEPAPPIEVVAVVSAPAEATPAPAAVDVAPPAATPAPAPALPAPATTVVAHTVQPGESLWSIAADLLGDGHRFNEIVEQNEAVLGGQASLIRPGWVLQVTVPAAAPDTAQDTTASESVVVERGDTLSGIAQAELGDAQRYPEIYEASKDIEQPGGVHLTDPNVIDVGWTLQLPTETPAATPTTAPVQTPAPDPVEEAAPAQPPAPETPAVDAAPAPDVAPAPHEAPAAESAPAEEAAPAPAPSPPAPDTASTDAGDHLEEDSAWTTRTTFGVGAVLAAGVLALIEARRRTQQRRRRPGQALPMATGDAAATEQELRATADALSVEHVDVALRTLAATCARTGQPLPVTRAARLTATQFDLYLSEPATLPAPWVGTSDELVWTLTVEDCENLAVDDAARATPAPYPALVTLGHDEENGHVLLNLEHLGSLAITGDDPTTREILGALSVELATSIWADDLQVTLVGAFPDLEDALQTGRIRYLPSVSRVLDDLLTRAEQDRKVLADSGVADLYSARVTGDASDAWAPEIVVIASDLTDRQRHQLTELVDQMPHVALAAITNGHGAGEWSLDLVPGATDGESSLAPIGLRVWAQQLPTAQYGHLLEVVAMADVDELDDTQIATFVPTVTEVESIAPDDRPSDPVSAIPEAILELLETPAADAPTPADEEEDEDAEREGQDDDEHSEHDVDERVDERVDERVDEFEPATSAGAEPDAAAPVVAVAASADAAPQPSGAAPEPEISEPEVAGRPQVLVLGPVDITGSTGRVEPSKRARLLEYATYLALNAGVSHTAIDDAIWPDRKTEDNLNTRNTATTKLRRWVGRTPDGEDYLPRHQAGGGYGFLPEVTTDVDAWDELLNHAPASASTDDLEAALKLVRGIPFEGTHRKRYAWAEPLKQRLISEIVDASSELARRRLLEGRWRAAEQAVVVGLRIEPAQENLWRLRILAAHESRNQAAEAEAIDRLLTITEHLECDLEPETEHLLAALKNPGADFDRLMADAL
>NZ_CP052758.1|WP_154800708.1|117877_118318_-|pilus-assembly-protein
MRILARLRRGGSERGSVTVWLVMAAFILVIFFGVAIDLTGQANAQQRVHDVAAQAARAGGQQLNAAQAVRGLGVKADPYAAAQAARTYLAASGVEGTVSVEGGTTVRVRTSDVYSTKIVSIVGIGNMRVTGEAEARVVRAVGGTEQ
>NZ_CP052758.1|WP_154800757.1|118317_118752_-|pilus-assembly-protein
MRRLRRGGRERGSEVIEAVIGVPAVLLFIGLIIAAGRIAIADQAVEAAAAEAARAASIARTQVQANEDASTWASASLSNQGLQCTSRTVDVDTGRFAAPPGTPASVSATVTCVVRLSDLAVPGLPGSRTITATMTSPIDTYRER
>NZ_CP052758.1|WP_154800709.1|118754_119156_-|pilus-assembly-protein
MHALRLRLTRAGGSHERGSSTIQMVMLMPVLFALMFVGVQAALMYQGRTIALAAAQEGARAAAAEYSSSGVGIEVARDYVNRSTSGLKQTSVTGQRGAATASVTVTTHTVSVIPGWSPKIVQSASMPVERVSG
>NZ_CP052758.1|WP_154800710.1|119170_119371_-|hypothetical-protein
MLYTIATLHLLGLNLADRARTKLTSTPERGSETIEKVLWAGAIIVIVGAAVAIFRGYVQREAAKIQ
>NZ_CP052758.1|WP_168732374.1|119452_120355_-|hypothetical-protein
MATGLQYALVGGALLGLGVALLIWRLSPSSPDVVDVVRRYSPEGVKERATLRTSTVEASSQIDRVGLWAMKRLPTNWWGKTPTKELALLRRPVHRHYGKKVLYALTGLVMPPLITYFFAVLGMPMPFIIPTGASIVLAIVLFFAPDFDVRADARKARAEFNRALGAYTDLVALERLGGSGSRQAMELAAEVGDNWVFQRISEELQRSRWKGEAPWDALHALADELGLPDLDDLADIMRLSGEGSQVYGNLRARSASMRSAMLNDELARANAINERMSMPMALLGVVFMVIIIAPTLLRVV
>NZ_CP052758.1|WP_154800712.1|120354_121218_-|type-II-secretion-system-F-family-protein
MSPLIPALGGAIIVAGVIGVVTGLRRTPVQPAAPRPVRTGRLARMTKQTKVLLLAGLAVGVVTYFLSGWIIALVLGPLAFAALPTLLVAPTGGAKIEKLEGLEEWTRALAGVLTVGLGLEEALRATLRSTPEAIRPEVTALVARLRARMSTEDAIRAFADDLDDATGDLVASYLLLGARRRGQGLASVLDDLAKSVAEDVRARRAIEADRAKPRTTARWVTIITVAVLGILAFTGDYVAPYGTPIGQVLLMTLLALYVALLLWMRKMATGQPLPRFLGAAAREGASA
>NZ_CP052758.1|WP_154800713.1|121214_122813_-|Flp-pilus-assembly-complex-ATPase-component-TadA
MTNMATDPTSLPIFNGGRGDDATPRGALQAPRRAGAHALAGQINPTTHRVPATRQLAPVPGPGPSEGQVVLDLPAAATGTPRASLDGIDWKKVAELRAQASNQLSAALGQEQVDQEIERELGRAIIQELIATENADAMHGGWAGWTQDEQFALAQAVFDALFGLGRLQPLVDDDSVENIIIAGYDNVWLEKTDGALVQIDPIADSDEQLTDDLAFIASRSEVNARPFSSANPRLHMRLDGGSRLAAAAWVTARPSVVIRRHRLRRVSLEDLVGRDMISPLQASFLRAAVQARKSIVVAGPQGGGKTTLVRALCQAINPWEKIGTFETEFELHLHELPDVHQIVHAWEARPGSGEVGADGKQAGEFSLDEALYDSFRFSLDRQIVGEVRGREIWAMIKAMESGAGSISTTHAASAEGAVRKLVTCAMEAGSHITRDLATSKLAETVDIIVQVHLQTEPQRDGTWKRSRWVSEIVHVAPGEKVKGYSTTNVFLPNPSGGPGVPGTLPDELRALEAYGFDLNGYLMADGQTEKAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP052758_1	1.1\|112574\|32\|NZ_CP052758\|PILER-CR,CRT	112574-112605	32	NZ_CP052758.1	113899-113930	2	0.938

1. spacer 1.1|112574|32|NZ_CP052758|PILER-CR,CRT matches to position: 113899-113930, mismatch: 2, identity: 0.938

gcaacgagccacggcccgtcggggtactcgta	CRISPR spacer
gccacgagccacggcccctcggggtactcgta	Protospacer
** ************** **************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP052758_1	1.1\|112574\|32\|NZ_CP052758\|PILER-CR,CRT	112574-112605	32	NZ_CP052758	Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence	112574-112605	0	1.0
NZ_CP052758_1	1.2\|112635\|32\|NZ_CP052758\|PILER-CR,CRT	112635-112666	32	NZ_CP052758	Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence	112635-112666	0	1.0
NZ_CP052758_1	1.3\|112696\|32\|NZ_CP052758\|PILER-CR,CRT	112696-112727	32	NZ_CP052758	Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence	112696-112727	0	1.0
NZ_CP052758_1	1.4\|112573\|33\|NZ_CP052758\|CRISPRCasFinder	112573-112605	33	NZ_CP052758	Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence	112573-112605	0	1.0
NZ_CP052758_1	1.5\|112634\|33\|NZ_CP052758\|CRISPRCasFinder	112634-112666	33	NZ_CP052758	Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence	112634-112666	0	1.0
NZ_CP052758_1	1.6\|112695\|33\|NZ_CP052758\|CRISPRCasFinder	112695-112727	33	NZ_CP052758	Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence	112695-112727	0	1.0
NZ_CP052758_1	1.7\|112756\|33\|NZ_CP052758\|CRISPRCasFinder	112756-112788	33	NZ_CP052758	Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence	112756-112788	0	1.0
NZ_CP052758_1	1.8\|112757\|32\|NZ_CP052758\|CRT	112757-112788	32	NZ_CP052758	Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence	112757-112788	0	1.0
NZ_CP052758_1	1.1\|112574\|32\|NZ_CP052758\|PILER-CR,CRT	112574-112605	32	NZ_CP052758	Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence	113899-113930	2	0.938
NZ_CP052758_1	1.4\|112573\|33\|NZ_CP052758\|CRISPRCasFinder	112573-112605	33	NZ_CP052758	Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence	113898-113930	3	0.909
NZ_CP052758_1	1.8\|112757\|32\|NZ_CP052758\|CRT	112757-112788	32	EU717894	Xanthomonas phage phiL7, complete genome	23351-23382	7	0.781
NZ_CP052758_1	1.8\|112757\|32\|NZ_CP052758\|CRT	112757-112788	32	NZ_MF344572	Enterobacter hormaechei strain 24845 plasmid p24845-Ct2, complete sequence	111129-111160	7	0.781
NZ_CP052758_1	1.8\|112757\|32\|NZ_CP052758\|CRT	112757-112788	32	NZ_MF344582	Citrobacter freundii strain 525011 plasmid p525011-HI2, complete sequence	132809-132840	7	0.781
NZ_CP052758_1	1.3\|112696\|32\|NZ_CP052758\|PILER-CR,CRT	112696-112727	32	NZ_CP017941	Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence	247816-247847	8	0.75
NZ_CP052758_1	1.7\|112756\|33\|NZ_CP052758\|CRISPRCasFinder	112756-112788	33	EU717894	Xanthomonas phage phiL7, complete genome	23351-23383	8	0.758
NZ_CP052758_1	1.8\|112757\|32\|NZ_CP052758\|CRT	112757-112788	32	NZ_CP034811	Paracoccus sp. Arc7-R13 plasmid unnamed1, complete sequence	53998-54029	8	0.75
NZ_CP052758_1	1.8\|112757\|32\|NZ_CP052758\|CRT	112757-112788	32	NC_048789	Corynebacterium phage Stiles, complete genome	24628-24659	8	0.75
NZ_CP052758_1	1.8\|112757\|32\|NZ_CP052758\|CRT	112757-112788	32	NC_048791	Corynebacterium phage Adelaide, complete genome	23597-23628	8	0.75
NZ_CP052758_1	1.2\|112635\|32\|NZ_CP052758\|PILER-CR,CRT	112635-112666	32	AP008986	Xanthomonas oryzae phage OP2 DNA, complete genome	42413-42444	9	0.719
NZ_CP052758_1	1.3\|112696\|32\|NZ_CP052758\|PILER-CR,CRT	112696-112727	32	MF140414	Mycobacterium phage Krypton555, complete genome	72548-72579	9	0.719
NZ_CP052758_1	1.5\|112634\|33\|NZ_CP052758\|CRISPRCasFinder	112634-112666	33	AP008986	Xanthomonas oryzae phage OP2 DNA, complete genome	42412-42444	9	0.727
NZ_CP052758_1	1.8\|112757\|32\|NZ_CP052758\|CRT	112757-112788	32	MH834620	Arthrobacter phage Melons, complete genome	22906-22937	10	0.688
NZ_CP052758_1	1.8\|112757\|32\|NZ_CP052758\|CRT	112757-112788	32	MH834618	Arthrobacter phage Lunar, complete genome	23090-23121	10	0.688

1. spacer 1.1|112574|32|NZ_CP052758|PILER-CR,CRT matches to NZ_CP052758 (Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence) position: , mismatch: 0, identity: 1.0

gcaacgagccacggcccgtcggggtactcgta	CRISPR spacer
gcaacgagccacggcccgtcggggtactcgta	Protospacer
********************************

2. spacer 1.2|112635|32|NZ_CP052758|PILER-CR,CRT matches to NZ_CP052758 (Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence) position: , mismatch: 0, identity: 1.0

gaatccagccaggtcaaccgctcgacgccgag	CRISPR spacer
gaatccagccaggtcaaccgctcgacgccgag	Protospacer
********************************

3. spacer 1.3|112696|32|NZ_CP052758|PILER-CR,CRT matches to NZ_CP052758 (Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence) position: , mismatch: 0, identity: 1.0

ccctaccggcagtccatggcggcgctcctgga	CRISPR spacer
ccctaccggcagtccatggcggcgctcctgga	Protospacer
********************************

4. spacer 1.4|112573|33|NZ_CP052758|CRISPRCasFinder matches to NZ_CP052758 (Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence) position: , mismatch: 0, identity: 1.0

cgcaacgagccacggcccgtcggggtactcgta	CRISPR spacer
cgcaacgagccacggcccgtcggggtactcgta	Protospacer
*********************************

5. spacer 1.5|112634|33|NZ_CP052758|CRISPRCasFinder matches to NZ_CP052758 (Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence) position: , mismatch: 0, identity: 1.0

ggaatccagccaggtcaaccgctcgacgccgag	CRISPR spacer
ggaatccagccaggtcaaccgctcgacgccgag	Protospacer
*********************************

6. spacer 1.6|112695|33|NZ_CP052758|CRISPRCasFinder matches to NZ_CP052758 (Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence) position: , mismatch: 0, identity: 1.0

cccctaccggcagtccatggcggcgctcctgga	CRISPR spacer
cccctaccggcagtccatggcggcgctcctgga	Protospacer
*********************************

7. spacer 1.7|112756|33|NZ_CP052758|CRISPRCasFinder matches to NZ_CP052758 (Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence) position: , mismatch: 0, identity: 1.0

cagggtgtaggggccgcgggcttcgggccggca	CRISPR spacer
cagggtgtaggggccgcgggcttcgggccggca	Protospacer
*********************************

8. spacer 1.8|112757|32|NZ_CP052758|CRT matches to NZ_CP052758 (Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence) position: , mismatch: 0, identity: 1.0

agggtgtaggggccgcgggcttcgggccggca	CRISPR spacer
agggtgtaggggccgcgggcttcgggccggca	Protospacer
********************************

9. spacer 1.1|112574|32|NZ_CP052758|PILER-CR,CRT matches to NZ_CP052758 (Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence) position: , mismatch: 2, identity: 0.938

gcaacgagccacggcccgtcggggtactcgta	CRISPR spacer
gccacgagccacggcccctcggggtactcgta	Protospacer
** ************** **************

10. spacer 1.4|112573|33|NZ_CP052758|CRISPRCasFinder matches to NZ_CP052758 (Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence) position: , mismatch: 3, identity: 0.909

cgcaacgagccacggcccgtcggggtactcgta	CRISPR spacer
ggccacgagccacggcccctcggggtactcgta	Protospacer
 ** ************** **************

11. spacer 1.8|112757|32|NZ_CP052758|CRT matches to EU717894 (Xanthomonas phage phiL7, complete genome) position: , mismatch: 7, identity: 0.781

agggtgtaggggccgcgggcttcgggccggca	CRISPR spacer
gggcggtaggggccgcgggcttcgtgctggtg	Protospacer
.**  ******************* **.**..

12. spacer 1.8|112757|32|NZ_CP052758|CRT matches to NZ_MF344572 (Enterobacter hormaechei strain 24845 plasmid p24845-Ct2, complete sequence) position: , mismatch: 7, identity: 0.781

agggtgtaggggccgcgggcttcgggccggca--	CRISPR spacer
ggcgtgtaggagcggcgggcttcggg--ggcctc	Protospacer
.* *******.** ************  ***

13. spacer 1.8|112757|32|NZ_CP052758|CRT matches to NZ_MF344582 (Citrobacter freundii strain 525011 plasmid p525011-HI2, complete sequence) position: , mismatch: 7, identity: 0.781

agggtgtaggggccgcgggcttcgggccggca--	CRISPR spacer
ggcgtgtaggagcggcgggcttcggg--ggcctc	Protospacer
.* *******.** ************  ***

14. spacer 1.3|112696|32|NZ_CP052758|PILER-CR,CRT matches to NZ_CP017941 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ccctaccggcagtccatggcggcgctcctgga	CRISPR spacer
cgctaccgtcagaccatggcggcgcgcactgt	Protospacer
* ****** *** ************ * . *

15. spacer 1.7|112756|33|NZ_CP052758|CRISPRCasFinder matches to EU717894 (Xanthomonas phage phiL7, complete genome) position: , mismatch: 8, identity: 0.758

cagggtgtaggggccgcgggcttcgggccggca	CRISPR spacer
ggggcggtaggggccgcgggcttcgtgctggtg	Protospacer
 .**  ******************* **.**..

16. spacer 1.8|112757|32|NZ_CP052758|CRT matches to NZ_CP034811 (Paracoccus sp. Arc7-R13 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agggtgtaggggccgcgggcttcgggccggca	CRISPR spacer
gccgtgtcggggccgcgggcttcgggatcgga	Protospacer
.  **** ****************** . * *

17. spacer 1.8|112757|32|NZ_CP052758|CRT matches to NC_048789 (Corynebacterium phage Stiles, complete genome) position: , mismatch: 8, identity: 0.75

agggtgtaggggccgcgggcttcgggccggca--	CRISPR spacer
cgggtgcaggggccgcgggcatc--gtcagccat	Protospacer
 *****.************* **  *.*.**

18. spacer 1.8|112757|32|NZ_CP052758|CRT matches to NC_048791 (Corynebacterium phage Adelaide, complete genome) position: , mismatch: 8, identity: 0.75

agggtgtaggggccgcgggcttcg-ggccggca	CRISPR spacer
cgggtgcaggggccgcgggcatcgtcgtcgat-	Protospacer
 *****.************* ***  *.**..

19. spacer 1.2|112635|32|NZ_CP052758|PILER-CR,CRT matches to AP008986 (Xanthomonas oryzae phage OP2 DNA, complete genome) position: , mismatch: 9, identity: 0.719

---gaatccagccaggtcaaccgctcgacgccgag	CRISPR spacer
tgtgggc---gccaggtctaccgctcggcgccgaa	Protospacer
   *...   ******** ********.******.

20. spacer 1.3|112696|32|NZ_CP052758|PILER-CR,CRT matches to MF140414 (Mycobacterium phage Krypton555, complete genome) position: , mismatch: 9, identity: 0.719

ccctaccggcagtccatggcggcgctcctgga	CRISPR spacer
cgcgcttcgcagaacatggcggcgctcctggc	Protospacer
* *  .. ****  *****************

21. spacer 1.5|112634|33|NZ_CP052758|CRISPRCasFinder matches to AP008986 (Xanthomonas oryzae phage OP2 DNA, complete genome) position: , mismatch: 9, identity: 0.727

----ggaatccagccaggtcaaccgctcgacgccgag	CRISPR spacer
ctgtggg----cgccaggtctaccgctcggcgccgaa	Protospacer
    **.     ******** ********.******.

22. spacer 1.8|112757|32|NZ_CP052758|CRT matches to MH834620 (Arthrobacter phage Melons, complete genome) position: , mismatch: 10, identity: 0.688

agggtgtaggggccgcgggcttcgggccggca	CRISPR spacer
ggggtgtaggtgctgcgggcttcgaatcccag	Protospacer
.********* **.**********...*   .

23. spacer 1.8|112757|32|NZ_CP052758|CRT matches to MH834618 (Arthrobacter phage Lunar, complete genome) position: , mismatch: 10, identity: 0.688

agggtgtaggggccgcgggcttcgggccggca	CRISPR spacer
ggggtgtaggtgctgcgggcttcgaatcccag	Protospacer
.********* **.**********...*   .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP052757

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP052758

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection