CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046175	Haloactinobacterium sp. HY164 strain HY044 chromosome, complete genome	8 crisprs	WYL,csa3,DEDDh,DinG,RT,cas3,PD-DExK	0	3	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046175_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046175_1

595116-595204

Orphan

Consensus_repeat	Method
CCACGGCGGTCACGTCGCCGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046175_1

>merge|NZ_CP046175|1|595116-595204|CRISPRCasFinder
GGAGGGCGGTCACGTCCACGGCGGTCACGTCGCCGTCGGTCGCATCTGCCGCGGTCGTGCCGGGGCCAGCGGCGGTCACGTCGCCGTCG

>NZ_CP046175|1|1|595116-595204|CRISPRCasFinder
GGAGGGCGGTCACGTCCACGGCG	GTCACGTCGCCGTCGGTCGCATCTGCCGCGGTCGTGCCGGGGC
CAGCGGCGGTCACGTCGCCGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046175.1\|WP_154796501.1\|578804_580208_+\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|273349
NZ_CP046175.1\|WP_154792429.1\|600089_600506_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154792435.1\|605336_606560_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154792432.1\|602566_603022_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154792431.1\|601100_602570_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP046175.1\|WP_168217723.1\|596018_600050_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP046175.1\|WP_154792423.1\|590592_592197_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377414
NZ_CP046175.1\|WP_154792421.1\|585213_586224_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154792430.1\|600556_601099_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154796502.1\|580209_580896_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NZ_CP046175.1\|WP_154792434.1\|603600_605271_-\|phage-tail-sheath-protein	unknown	unknown	gnl\|CDD\|379979
NZ_CP046175.1\|WP_154792426.1\|593152_593959_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274542
NZ_CP046175.1\|WP_154792427.1\|593955_595008_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222877
NZ_CP046175.1\|WP_154792437.1\|607923_608727_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NZ_CP046175.1\|WP_154792424.1\|592193_592694_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377431
NZ_CP046175.1\|WP_154792420.1\|581079_585183_-\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379635
NZ_CP046175.1\|WP_154792422.1\|586226_590600_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154792433.1\|603035_603590_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154792425.1\|592794_593130_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154792436.1\|606913_607876_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226156

Protein	Function_ID	Function_description	E-value
NZ_CP046175.1\|WP_168217723.1\|596018_600050_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	9.00559e-14
NZ_CP046175.1\|WP_154792423.1\|590592_592197_-\|hypothetical-protein	gnl\|CDD\|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	1.07485e-14
NZ_CP046175.1\|WP_154792431.1\|601100_602570_-\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	1.48838e-06
NZ_CP046175.1\|WP_154792434.1\|603600_605271_-\|phage-tail-sheath-protein	gnl\|CDD\|379979	pfam17482, Phage_sheath_1C, Phage tail sheath C-terminal domain. This entry represents the C-terminal domain in a variety of phage tail sheath proteins.	1.10197e-06
NZ_CP046175.1\|WP_154792426.1\|593152_593959_-\|hypothetical-protein	gnl\|CDD\|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	1.36115e-05
NZ_CP046175.1\|WP_154792427.1\|593955_595008_-\|hypothetical-protein	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	3.3107e-09
NZ_CP046175.1\|WP_154792424.1\|592193_592694_-\|hypothetical-protein	gnl\|CDD\|377431	pfam04965, GPW_gp25, Gene 25-like lysozyme. This family includes the phage protein Gene 25 from T4 which is a structural component of the outer wedge of the baseplate that has acidic lysozyme activity. The family also includes relatives from bacteria that are also presumably lysozymes.	7.02129e-07
NZ_CP046175.1\|WP_154792420.1\|581079_585183_-\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|379635	pfam14520, HHH_5, Helix-hairpin-helix domain.	3.8483e-07
NZ_CP046175.1\|WP_154796501.1\|578804_580208_+\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	8.6767e-90
NZ_CP046175.1\|WP_154796502.1\|580209_580896_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	4.54741e-39
NZ_CP046175.1\|WP_154792436.1\|606913_607876_+\|hypothetical-protein	gnl\|CDD\|226156	COG3629, DnrI, DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms].	2.62768e-25
NZ_CP046175.1\|WP_154792437.1\|607923_608727_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	9.20083e-18

>NZ_CP046175.1|WP_154792427.1|593955_595008_-|hypothetical-protein
MLRPAYRLTIGDQVIDTTVEPKASTVVEIVVRSDLGTPADEVTIVAGQVGALTAVPGADARVELGYSDADPALVVVFTGTVVAVEPDLRTTRIIAHSRADALLRTRMDRTFEDTTAGDVVRALADAAGVTVARADAGPSLHAYVVDGRRDACRHVRDLAALAGLDTYFTPDGELVFEAFGGTRSVHVLRYGEHVLEADLTRIRPVAATVTAFGESPGGSRGDESWAWLTKDFTSFAGTSGTDAPTLLLERGSLRTAAGAATAAQALAEHLAATAVTGRVRIQGRPQLALGALVRLEDFPDRPDSGVPDGNHQVSAVEHRLEKTHGFTTDVWLRSLVGAAAAATTATGGAP
>NZ_CP046175.1|WP_154792426.1|593152_593959_-|hypothetical-protein
MTTIVDTIAAIVRHELAAVRSTELGVVEAVYPHTSADDDDNYGVDVALKNSGLLLKRVPVGTGHVGTVGIPNVGDLVLVAFDHGDVNAPLVIARFYDDADRPPLSTTDEIVLRLPLDAGDDASVLAALRNHPSDDPARELIIEMPPKITVRIVDGTVTATAGQTELRLDQSGASGGTVQVKSGATTVTLDQDGDATLTSAASVTLQASGDLTLQAGGSIALDAGTSLTARAGTTAELAGGLSATVRGGTGVTVQGVSVSINGLTSFGP
>NZ_CP046175.1|WP_154792425.1|592794_593130_-|hypothetical-protein
MPGAPVSIGASVMVTPGAAGAPDTGTIIAVLPPLISASGLPLATSGSICVMVNSVTGVPYPLVIGPVGTSTGVRVGGRGLVRTGDRIPSPPGILLVIGPPATTSVTDGWPP
>NZ_CP046175.1|WP_154792424.1|592193_592694_-|hypothetical-protein
MSIPTAEREALAGTDLRLVGDLLTAAQRERGEDLRTGPRPQLLEPGQPDPGHDLLPVTGWENLEQALLLRFLTEVGELAHLGHPTYGSRLHELIGEPNTPTTRNRAKLYALQALAEEPRVERVASITVTTDPRDATRLEVRAAVVIIGTQTELNLVVGVPLVGGAA
>NZ_CP046175.1|WP_154792423.1|590592_592197_-|hypothetical-protein
MNEDVVNLVNRPYGDLVGDILTSVVGGVVNEPIVFDLKIGTYPLAEPAGGIRGITGTSGGAPRTFLLAIDFTFSGTATNNVIWLEDGTHPDDESTFYVDYFRLDTRSPLSDINVGSVTRTLTEAIGREIAVVYQQINLAYLSAFVDTATGTSLDYVVAILGVTRKTAEFAEGLATFFRAAGVDGNINIPAGTRLATADAKVFTTTQPRTLQTGQVRIDAPIRADVAFAGDDGLVAAGAISEMTQPIAGIENVSNLDPTIRAAADETDDELRTRAKAALRSLGKATLAALDRVIREGRGTPVEFFDPNSPLGSRSEPGTVTVVVDAEPERLPSLTDAVHATRAAGVVATLVARYVFISPRVRASITAGLSGPGQEQVRADIVAAAAAYVDGLTRGEAADGATLLAAIRAVPDVQEATIVDVVVARADLAGPEGDAGLVDALVQAVQLLPDGSDDAALRAALAASVATAGVNAPTTGRIPDRSLLLSTAPDRAGEPATDAEIEAGTFAVRAEVSGEQWWIALDMTPADVATEDADA
>NZ_CP046175.1|WP_154792422.1|586226_590600_-|hypothetical-protein
MPKADRILANLPPTFAVRGDPSALRAFSDAHGGELQSAENSLIAVMRAHWVTFADAGETAITDLALFAALYGLAPRPDESVEEFREHLLAFVRTHLEGTVTVRGILRITAEALGLHIEDASLDAWWDRGKEDGAAGDTDVLTTSAPRGADAASAVLGIGAARVGGRDAAPGRLVGTVDLAGGIDLTGARTLWVALDDGGAIPADLTTGVADPSSTTAAELAAALDAELGAAVATVEAGHLVLTSPTTGPGSAVAIEDGLDDAAQLVLGLAPRRYTGAGSRRATITGRADLSAPVDLRATRYLRIVTDADHVAEVDCAAGAADPAAVDVAEITAAINAGAGIPVATDDGAFLTLTSPTLGDAGSIALTEPAAQSATTTLFGSAPRLAVGTDATPARVISGRAIGSGVDLRGHSQLRLGLDAAPAVTLDVAGLDPAATTPNELVTAINEGLGTECASHDGARLSLASSSEGPTAVLRIEEVEGDAALDVLGLRPRSGRGAAQVTANLTGTADLAGGLNLSSRNLLRLAVDGGEPVEIDLRAGVADVTAADVGELADAVNAALGAEEDPVAGDDGTHLILTSPTAGAAGSLEVDPIVTTVRRRFVTRARVLDEAATTVLGFTARTAHGLPGTSARLATSTDLSGGIDLTGGSFLRVVVGDSGAVEVDCAGPRPRATTAAEIAQHLADGVPGLEVSTDGRTVVLLDPTQGAASRVALEPPHPLDAADQVLGAAAVGSVTGTGPAGVRFTGTVDLGDGAPLPADAALRLGVDGAAPVDVPLGDGTTPATLGLARICAQINVALGAPVAAHDGAHVLLTSPTVGGGSALVIEAPAAGTDATPVVLGIPAPRTYTGLAATAARVVGTVDLTGGADLGTRRLLRLRVDGGAPVDIDLTSASGAPGGGAGPGGAGIVDLAAITAAIRAATTADAASVPIPGGLALALTSPTTGPASRLEVTRAEVGDAAPLLFGAVGPSVTGTDPTPATIDGEVDLLAPVDLTERSVLRLRLDHGEPVDADLAGVTPSATLGAEIVAAIESVAPGVAALGPTDRLVLTSPTTGPGGAVEVVPTRHLEVVEYPPSTDTVTAAVAHGGVLVFSSSGSADVPGRVRVDSPGGVHGPRLTDPAAGWSVHVDTTVPARGELVLEWAPGGIGARVRGPSGWHPVDPALIHVSTGGGHGPLGPLTVRRGRNRWSWTECDAARFDEAIFDEDSFAGGPCVEDAVFDVSRFSPTAVPARFTATADRPASAHVSVTWDSHTAGSFEVNLPADLDPRFGRAFGEARFGAAEPELIAGVVTEPLGDDDNVITRVNAESALIECSPAPTVPIGWRPVALPFREPVHLSLGSPTQPARMYVSGPGLAPGFLEVRAADPGAYGNDISVSMRVVGPEIYDVTVHLPGARFENARAVVAGPEPPTLAERLLDPTPIGVGTAKAAGIRAVVTRDRARFGGPTVPAVPDRPAEEG
>NZ_CP046175.1|WP_154792421.1|585213_586224_-|hypothetical-protein
MTETAPPYVTQEPGDLVTADAWNTMQVRIHEDIRTQAAAAAEAITHVATADDAHHVGGLDIAALTEEVARRVLDEVRERTGYQQLFKVLKGGDITVIEHELGTPPLVDLYQLEYFEVAAREDDETRAAFATFYLCQAEERRVRVPNNSGGRRAIDIQPPDGPDVGIPFKDMLTRYQVSYTDTSSLDDLETEFWQAFFAAPNDRFSDDQYARSPWFERCCKEQQSVKRLKDNGDWDDILFISHPRKTVNFPGLNVFGNDGVRLLARPANVGVQHLDNNRTALWFVPPHRADDGPESRARAYINDPSQPVLDPDQDLPGNDNIGRFENELKLMVLLKV
>NZ_CP046175.1|WP_154792420.1|581079_585183_-|helix-hairpin-helix-domain-containing-protein
MHVQARHTGALLPFERDRRLVLRRLPVGAVLGRATLTLTPVSADADGRFLESLTFGAGTGPGSWGASKVVGTGALEVDLHARRRLASLTGSGFAGAPLLVDLGGGFLGLDSNGGFTDGPAFELSNSTELPGVSVTGLRVPAGGVDVSVLRVASPPSNLTLAVAGGPVFWSHFGDLTASVTTPDFSEVVTALLPGLPVANGAHVLELVLHSDSIARLDVTLDVEFTLAVAPAQVRTVRAQYAFDGVPSDDGGRLVVAVPAGAVVAGTTGQVLGAFAATQVVHGPVTAAAAVDLVALEAGGSLAQPLAPAAPLVATSVDLLVTSVSAQASLAVGLFADDDGKPGRTALLPRPAELVINRDTAGAPTWLNVALPGELELPARRVWLVVQATAGRAAWSAAPGPADEGGLPGPALQQTRDGGLSWRAVDGAGAAGAAGAVGAAGIGAAAALRLRHATTGFRMPLELRAGGGGQEVAVSLQRFAPSGAVDFSLDFPEVADALNTALSSAGGGPDAGEEIANGDFGQWYRVGQQPVETGRLSGAPEVAQDLAVVAPDGAEVFVVGHRFVDDAPVAVLTAYETYSRRRLLRTDLGAGEPLAVAIDPGGRRLIVSIDARRGVGLSSSSVTRGALVVVDAATGRPLGEPIVVPDPVTHLAPAADGLGVYLAGVTSTESGRRTVVRHLDWALLEAAATGGPLPADIPADDVPGVPVALATGIDGLVAVLTRTPSPSSGADEVTHLFVYDDRAAVGVGDRREATPDVVEGARGVACAPGQVLVLTAAQVRYLDPGNLEVGARVGVGGPNSPASALALDATGGLAVVVGADAVTVLDVAARRTSAGRYTLAGDGDPGVAVSPPGTHAVLTRPFADAAVLITIGDPVPVEWELTAGQVRPIALPTGRLMALIGDRPVALRQAPVPAPAPAPGLRQTAKPGAVAQSALAQVVPVVGGARYRFAFDGVALVEGASAQVRWIGDACGVERVDRVPVSVFDTADRSVLERVPHHEAVLTAPAGARSAEVRFHAAESYLLVDDVSLAGSADVAGTTWSPVESVAAGALTSTPTDGGATFTNGGAAPSELAQVVGVSAGDTYELTFRAVTTGAPGARLEVRFADEATTAVGQSVVLEVDELDLDAHGATGTVPAGAVEAILAIVVPPGAALTLTDLHLRLGSPTEVEVYLASEAPGEVSLTGVGVVLEEGPTAPAPVPPEGLCPPTPPGSSEDGTACYCRGCGRTAPVPRAPQAISTAGRPVSVGTCTSCGTGVVRTGGRVVGRAGGQPTAVALPMFRLPARTPATGPALVAEVMVEASLEEVEFIGPARAAALVAAGVPDVVALAGADPTLVATLPGVSTTLAPRIIAAAAALVRARGSRVLLGL
>NZ_CP046175.1|WP_154796502.1|580209_580896_+|TrkA-family-potassium-uptake-protein
MPRAAPGSIALNDSDSVVVAGLGRFGSALAIELAEAGVEVLGIDTDEEIVQGLSDTLTHVVRADTTKMEALEQLGVPNFSHVVVAIGSNVEASILTTSWMLRFEIEHLWAKAISEPHGQILTQLGVQHVVSPESDMGRRVAHLLRGSIADYQDVGGGFATVTAKAPPSMVGKSLDQVGLRKKHNLNVVAVMQQDGTWAHATGETILNWDDTVIVMGPSALAERFIDMS
>NZ_CP046175.1|WP_154796501.1|578804_580208_+|TrkH-family-potassium-uptake-protein
MQTRPIRLRGTRAPVLGRPGQVLVASFAGAVVVGTLLLMLPIAVVSEPPPGPLPSDTGPWGGAPVLAALFTATSAVCVTGLIVVDTATYWSPFGQVVVLALIQLGGLGIMTFASLLTILLARRLGLRSRLIASASVRSVSLGDVRAIVIGVAKVGFGTEAVVAVVLAVRLATGYGAGFGESVWFGLFHSVSAFNNAGFALYSDNLMGFVTDPWVGLPIAAAVVLGGLGFPVIFELRRHFRMPRKWSMHTKLVLSGTVVLLLGGVITITALEWSNPQTLGPLDPAGKVLAGVFASVVARTAGFNSIDISAMHTQTWFAQDVLMFIGGGPAGTAGGLKITTFAVLFFIIVTEIRGGTAVNIFGRRLARSVHREATTVALLAVAVVMIGTWSLLIMTTFSLDQIVFEVVSAFATVGLSTGITHLLPTGGQLILVALMFIGRLGPLTLASALALRSRSSYVELPKERPIIG
>NZ_CP046175.1|WP_168217723.1|596018_600050_-|OmpA-family-protein
MVRPMLGELELEQVQVVSSDEDHALVRHRVPALEGDFLQALGRRGARLMLTGVLTAPDTKEHLAAVRERFHAGDPVPFVSDISAATSVDRVIVERMDVREVAGRPSAFEYTLALRELTDAEPIDVEEVIIPPPPPPTVTDGKLAVTVVVEGDPAFDMDRVRVSVAGTTDDGTALDRVLTNRIRPDTWFADPFPAGQYTASALVDDTRNPTGQHEVLTGSATVRVIEGATASVTIVLRRGAKIGTVFVITFHFDKSFVEPCERHVLAQVIAYSDAHPDERLLIVGHTDLTGGDDYNQSLSERRARATYAMMTFGSNPAAAVAEWDELRRTRPFGTITTVKDTWGTREYQFMLADLGRFFGNVGADPELTDTAVRTFQSDHGLTPDGIVGDATWPVLIREYLGNGPLNLPTARLMPNASEGCDSGPLRWIGCGEQDPVLSTQSAWRPNRRTELMFVKESAMPAQVPEPITLDQVPDGAGGGGWCLDDGTATGVADFVVPWGQPCPSPPQPKWCRTPAEPGTSPVVGRITFTDGTAFADRPYVLMAADGEYLGGEVAVTSAAAHAGTPIRSRTDADGNFTFPGGVVPEKGPGIYVISVDGPFLLRTATQSLADVRGNATCFRYSGTPAEIIVVDRAVADVVPAITGPDVVLVRKVHTSPARRPVVLRTPAFTGSGRLEASSDAVRFFDAAAGGTEITFDGVDNVFDSAALAAGVTLFAEGRTASATMGDVVLTLAVTVSGTPGLSQTHPMTAVEVFLDLHRTRSAAGAAPVTLSEADKITPGRFVQVQDAGFHAGRALITVRQALPADFTGTLSLGRLDARTRFFAAADEVAAAGQAEVVAPVLLPAAGIPAAGSAFWVEGAAVSGALRDAVLQLGVDGVEADGDRAVLTVVELSNLTMTIPATEANTARLGNSPVPAHVVPGRAVPAPVDFDDNPTTNPPIPLLENCVRPDRPIEFTVVVRPAGVPVVWDAHRLRGIPAADGGDDAAAIVALSAADGPTVTRDPGNALRATMLADNVGTFGVRAFVDGNGNDDYDVGIDREPSIVKTVLLGRVTMFLDSCIDQSGSFNVTPVAGGGISVATGDPAFNIAIPATAAIHFLVQADAVTGGATGRRSVNAYLAGWINNETAPEGILGRFQDDSVAPPAAHTDLSVVASNRAAATGGTAGAPVFLPGDPAPVLIAPPTLDSGFGVGAVGIGGETATFGVGGIRRRTALAVGERWIVEDIDSPGDSEPGAHPAVAAATLRRFVWGLDFVATLGIWTNITGVVAATGDPADRVYTALVQKRWTQRGEWTIDPATGAIAVAVPPTTTITGTTLTSPAVAIGDTTIEVRFPAVLDNLARDARA
>NZ_CP046175.1|WP_154792429.1|600089_600506_-|hypothetical-protein
MAEPNLFEELKAVLADFKSFLDDNVATIKPAIQAIASLVPQVTELIDLLVELMNKLKTEIQNLDVGAIPGLGEVAEFTGKIPAFLDAAKKILPGETGAIESIADVASVVTGLPSVDQVKTELLDLITAITTHLNSLKP
>NZ_CP046175.1|WP_154792430.1|600556_601099_-|hypothetical-protein
MRPMLGTLELPQVQDLTTSDLRAVAEHQAVGKDGSMLQNLGRAPTGVRVRGVATDTAAATLIEELKAQVRTGEPVAFVADITADTSVEEVLVDDLQVRELAGRPGAFAYVLTLREFTEPVAPASTAALEADILGEADDLLGDLLDGLDITPPFATGLEAFVTPLTGLLERLRAFREATGG
>NZ_CP046175.1|WP_154792431.1|601100_602570_-|hypothetical-protein
MSTGRAPSTAGRPAAGGGGGLPRMSGVLPRVGGTLGHLAGGAGPAAWCRDTARLTRSVDVLDARVGAACAAAPAPPRLAEGPMLGRTLAQCVAGPDDGGGDPGAGGRRERWRPSGVADDGGARPGRGSPGVVGGSSEDPFGPGRGGATGRPHGPDRWTPGGAVADPGRGPAAGNHAAPDPAAPSTDRSPGAGAPGPRRPGAEAGRTPGDLGPLPPPDACPPATRLRELAGPDAADRRSQPPGPAGLRPRPAHPRRPHPTREHPARSGTAASHLPPVAGLDHVLERVRAGLAAAGLAALADPVATSRRPLHRASAADALALAASLTRGAGQWRNARNGNGSAEPGPAVGPARERSDPRRTSGDDDHPSTSAVGPTQATSPGAPLGGRPAQEGPDAAPQARTAAHGLDPQAEFAIAPTRPARLVRLAGDAEETEGGEHGWPATWPAGPATATESSAAPGVGGSVPATSVPELERLVARMLTDAARRHGIEA
>NZ_CP046175.1|WP_154792432.1|602566_603022_-|hypothetical-protein
MARTALTAEELLAGSALTHEVTLPPGGPAGTVTIRPLTVRDVQLVAHAAAGDRELAAGLMIARALVEPALTAEQAGRLPAGLARVLVDAINELSGIETPRDRLAELVQAPLAKACFVLAEEFGWTAEDVAGMTIGQILMYLEMTGRAAEVA
>NZ_CP046175.1|WP_154792433.1|603035_603590_-|hypothetical-protein
MALTEVFTGNHGTLTLAAEDTPEGADASAVVDTFAIQTVGRLTDVRVCVDTALKEFYEVGRRHPVSLSPGDIHIAGTVGRAYVNGALLLLLMGRGSAPTAVAEPYVQPAFTINLVLADPAHPGNSLTLEIAGVKFENWRYTLPEDDFVVENLRFRALTIRVLDREGAGGGGGEAPPTEVAFATE
>NZ_CP046175.1|WP_154792434.1|603600_605271_-|phage-tail-sheath-protein
MTELVLPGVFIEVRPEGLIVPGAITVGNLGVVGTAAKGPVGTPRLLGSYSDALATFGAYDPWHGGTNDELTLTRALEQAYRFGATSVWAVRVADPGAVATAGLDLDSATGPCVRVDARWPGTWANGLTVAVSTADASALVREETVAGPPFVLAHAEVLHSAVNRIVVRPGGGGSDTVVPIVYDAAPSPTQVGVTTADGTLTFGTDPAAGDTVLATYMVDKASAVKVTVTLGVSAKEEYNVVSGDDLVADLADSALVTATALANPAEVPSTLAATPMGGGANGAGDPTGALHAGGLDALLAVDAHIIVGAGQTDATFGDDLALHCALASNDDNKRERIGIVGTALEDDRAAFVQNASGHALNSDRVVLVGPGFVADDRSVSPPAKVTLPGAYTAAAVAGLLSAQAPHISLTNKVLGVEALEHDLSSAELKQLVLSRVLAVEKRQGLRLVRGITTSTNTAWQQITTRRIVDYAKFGVRSAATPYIGLLNNERVRGALRATINNFLNSMVLDELLASENGYRLDVHATRDDEIRGIARVDIFLRPTFSIDFIKVTMFLE
>NZ_CP046175.1|WP_154792435.1|605336_606560_-|hypothetical-protein
MSGHEQVGGAQTNLVARSFLVRALLEDAPGAGPRWHGIVTDVQTGTRTGWHHSGEIARAVDLALTSDVGPGADGLDLPTLGSDVSAPTLTDVVTAMLGALGARLPAPLPGVPDGNVTIEQVTAKPVGLGDHIGTEGAPALGTRTLRGGRLDARVRFQLWATSSPEVDAAVLGLQSTLLDDQDALRAKGFLRFAASETTIAEHIPVLPAWRKASSYDVLYEYRYTADDDADSLIARIPVTTGHGDEAAPTSEAQTIVDELRRWDDEAAPALNVTGPTAVGTIAAIAYVPGPVLGGTVTFARRSGAVPTAFADLDGFLTAVGGAVPTHRDATVTLTPAAALAALGPAVPGPDLGDWDTDGTVDAYSGAARRLTAPILLAAGERFEITYTPPGASPGLDQTAVVYLRLSR
>NZ_CP046175.1|WP_154792436.1|606913_607876_+|hypothetical-protein
MTALTVRLLGPFRALRGDRPLPSPMLHKAQDLLTMLFLAPGHALLREAAAESLWPDTDAETSRKAMRQTLWQIHHATDEPMAQDRLVICDGDGLMINPERPVSVDLPVFVGAVREAQDTGGRVLTDDRLIRLCTAADLYRGPLHAGCYDDWCLIPRARLEDRCLTLLDRISRERERRGDLDGAIAWTQRLLEIEPAHERSHRRLMRLFSRVGDRTGALRQLAECRAALARDLGVHPEASTEDLGAAILADRVDHGSGRSPLAGAEIPDADTELTLLRLEVAALRQSIECIGEQLRDAPVPASRADLGVAPPLTSHQPGPN
>NZ_CP046175.1|WP_154792437.1|607923_608727_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MQNPFEGSISQKFKRSGGQLVHAGVDIRPRSGGTLGNPVFAAFAGTVEKSVSMQVPGDTSSGRAPLRTGNGAVIRNPDGEAQLYDHVLPSVRKGDRVKEGELVGFSDATGIQTGPHLHFETWDRASRPQDPEAAFRKHGVTPGNGAPAAASGPFLPLRVDGSFAHRTATELQRALARADFYDGAVEADQRKHAVLGPKFIGGYQRFLVANNTAPDRNEKFFGVRSVKAEQTWLTRLGLYRGTIDGDRGRVTIEALQQALNNGRVRVT

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Crispr_ID: NZ_CP046175_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046175_2

1093905-1094065

Orphan

Consensus_repeat	Method
GGACAAGGCCGGCGACGTCTTCGAGGACG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP046175_2

>merge|NZ_CP046175|2|1093905-1094065|CRISPRCasFinder
GGACAAGGCGAGCGAGGCGTTGGAGAGCGCGAAGAGCAAGGTCGGCCCCGCCGTCGAGGGTTTCGCGGACAAGGCCGGCGACGTCTTCGAGGACGTGAAGGAGAAGACCGGGGACGTCTTCGAGGACGCCAAGGACAAGGCCGGGGACGTCTTCGAGGACG

>NZ_CP046175|2|2|1093905-1094065|CRISPRCasFinder
GGACAAGGCGAGCGAGGCGTTGGAGAGCG	CGAAGAGCAAGGTCGGCCCCGCCGTCGAGGGTTTCGC
GGACAAGGCCGGCGACGTCTTCGAGGACG	TGAAGGAGAAGACCGGGGACGTCTTCGAGGACGCCAA
GGACAAGGCCGGGGACGTCTTCGAGGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046175.1\|WP_154792801.1\|1086885_1087353_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154792803.1\|1088923_1090006_+\|acyl-CoA-desaturase	unknown	unknown	gnl\|CDD\|239583
NZ_CP046175.1\|WP_154792813.1\|1099234_1100416_+\|xylose-isomerase	unknown	unknown	gnl\|CDD\|237170
NZ_CP046175.1\|WP_154792811.1\|1097342_1097915_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378968
NZ_CP046175.1\|WP_154792800.1\|1086551_1086770_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154792808.1\|1094316_1095339_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224525
NZ_CP046175.1\|WP_154792809.1\|1095498_1095858_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154792804.1\|1090117_1091407_-\|alpha-L-fucosidase	unknown	unknown	gnl\|CDD\|226195
NZ_CP046175.1\|WP_168217758.1\|1085558_1086023_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154792802.1\|1087372_1088719_-\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|274511
NZ_CP046175.1\|WP_154792816.1\|1102282_1103032_+\|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl\|CDD\|259850
NZ_CP046175.1\|WP_168217757.1\|1084875_1085565_-\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|379140
NZ_CP046175.1\|WP_154792806.1\|1092334_1093498_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP046175.1\|WP_154792815.1\|1101873_1102230_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|369571
NZ_CP046175.1\|WP_154792799.1\|1086351_1086555_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154792814.1\|1100426_1101872_+\|xylulose-kinase	unknown	unknown	gnl\|CDD\|198375
NZ_CP046175.1\|WP_154792805.1\|1091462_1092335_-\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|224007
NZ_CP046175.1\|WP_154792812.1\|1097964_1099155_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP046175.1\|WP_154792817.1\|1103069_1104272_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP046175.1\|WP_168217759.1\|1095897_1097241_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863

Protein	Function_ID	Function_description	E-value
NZ_CP046175.1\|WP_168217759.1\|1095897_1097241_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.34748e-45
NZ_CP046175.1\|WP_154792813.1\|1099234_1100416_+\|xylose-isomerase	gnl\|CDD\|237170	PRK12677, PRK12677, xylose isomerase; Provisional.	0
NZ_CP046175.1\|WP_154792811.1\|1097342_1097915_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	2.865e-11
NZ_CP046175.1\|WP_154792808.1\|1094316_1095339_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.09252e-91
NZ_CP046175.1\|WP_154792804.1\|1090117_1091407_-\|alpha-L-fucosidase	gnl\|CDD\|226195	COG3669, COG3669, Alpha-L-fucosidase [Carbohydrate transport and metabolism].	3.24295e-55
NZ_CP046175.1\|WP_154792802.1\|1087372_1088719_-\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|274511	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking].	6.98015e-05
NZ_CP046175.1\|WP_154792816.1\|1102282_1103032_+\|di-trans,poly-cis-decaprenylcistransferase	gnl\|CDD\|259850	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases. Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.	6.03355e-74
NZ_CP046175.1\|WP_168217757.1\|1084875_1085565_-\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|379140	pfam13360, PQQ_2, PQQ-like domain. This domain contains several repeats of the PQQ repeat.	3.74439e-06
NZ_CP046175.1\|WP_154792806.1\|1092334_1093498_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.18619e-44
NZ_CP046175.1\|WP_154792815.1\|1101873_1102230_+\|cupin-domain-containing-protein	gnl\|CDD\|369571	pfam07883, Cupin_2, Cupin domain. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel).	0.000676391
NZ_CP046175.1\|WP_154792814.1\|1100426_1101872_+\|xylulose-kinase	gnl\|CDD\|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	1.777e-152
NZ_CP046175.1\|WP_154792805.1\|1091462_1092335_-\|TIM-barrel-protein	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.91538e-25
NZ_CP046175.1\|WP_154792812.1\|1097964_1099155_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.1409e-36
NZ_CP046175.1\|WP_154792817.1\|1103069_1104272_-\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	6.14625e-126
NZ_CP046175.1\|WP_154792803.1\|1088923_1090006_+\|acyl-CoA-desaturase	gnl\|CDD\|239583	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; and acyl-CoA desaturases are present in ER membrane. ER-bound plant acyl-lipid desaturases and acyl-CoA desaturases require cytochrome b5 as an electron donor. Most of the eukaryotic desaturase domains have an adjacent N-terminal cytochrome b5-like domain. This domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase.	6.52789e-59

>NZ_CP046175.1|WP_154792806.1|1092334_1093498_-|Gfo/Idh/MocA-family-oxidoreductase
MTTRTLRIAMNGITGRMGYRQHLLRSILPIREAGGVVLEDGTKVQVEPILVGRRADAVREIAEKHDIAEWTTDQDAVIDADDIDVYFDSQVTSRRYAALTRAMRNGKHIFTEKPTAETLEEAIQLARLRNETGVTAGVVHDKLYLPGLVKLRRLVDEGFFGRILSLRGEFGYWVFEGDHQSAQRPSWNYRKEDGGGMTTDMFCHWNYVLEGILGSVKSVVARTATHIPTRWDERGEAYDATADDAAYGIFEITGPNGEEIIAQINSSWAVRVYRDELVEFQVDGTHGSAVAGLRKCVAQQRAHTPKPVWNPDLPVTEPFRDQWLEVPANDDLDNGFKLQWEEFLRDAVAGREHRYDLLSAARGVQLAEAGLASSEQGRRIDLTPITL
>NZ_CP046175.1|WP_154792805.1|1091462_1092335_-|TIM-barrel-protein
MADLSRLSLNTATTKAWTLAEAVDGAVRAGLPAVGLWRDRVAEAGLENAARIVADAGLRVSSLCRGGFMTASDEAGRAAALADNRAAIVEAATLGTRELVMVVGGLGAASAPGGPALPDGDRDLVAARQRVADRVADLAPFAAEHDVRIVLEPLHPIFAADRAVLSTMKQCLDLAEQFPAETVGVVVDTYHVWWDPDLREQIARAGAQGRIASYQVCDWLLPLATDALLSRGFMGDGYIDFPTITSWIAGTGYTGDVEVEIFNQQIWDSPGDETIATMAERYDTLVRPYL
>NZ_CP046175.1|WP_154792804.1|1090117_1091407_-|alpha-L-fucosidase
MTNPGTPRPVPTPAQLRWQEAALGVFWHFGINTFNDREWSDGTLDPATFDPGDLDADQWVRTALDAGAKYAVLTAKHHDGFCLWPSATTDYSVASSPWREGRGDVVAEVAAACRRHGLALGLYLSPWDRNAPCYEDAEAYDDLYLTQLRELCTNYGELFELWFDGAGSAGRSYDWDRIAALIDELQPGAMVFNMGRPTIRWVGNEDGLAADPVEYVVDRTHADNYTEGTADLAEARYLPPECDVSIRPGWFHHDAESPKTVDHLLAIAYRSIGLGAGLLLNLPPDARGHIPEEDVARVRAWRAVWDRRFADPVPATLTASGDTVLARFERPVTIDHLVLREDLTAGQHVRGHEVRTPDGVVLVAAGTVGVRRVHVFEPVRVRELVVRVEADGGASAAGHLTSVTAYDTGGAVVPDLPANYRAPTTPPPD
>NZ_CP046175.1|WP_154792803.1|1088923_1090006_+|acyl-CoA-desaturase
MSSIAIQLPGTGTVRERHVSDFKELTQRVQAAGLLKRSYAYYWSKIIGLTFGGLALAAAFVLIGNSWWQMALAVGLALLMTQVAFLGHDAAHRQIFVSGKWNEWISLILINLFVGMGHGWWQRKHTKHHQVPNKVGADPDIGGRVLAFTPEGYASRKNPLTRWLATQQGRFFFPLLLLEGVNLHVQGIKGVLSRGKVKRRWVELSFIAFRLGSYFALVFIILPPGKAAAFIGIQLAVFGLYMGSSFAPNHIGMPLVPPTAKIDFLRRQVLMSRNITGGRAVDTFMGGLNFQVEHHLFPSMSRPNLRKVAPIVKAHCEALGVRYTETTLMQSYRAVIAYLNKVGRGGLDVWACPLAAQYRL
>NZ_CP046175.1|WP_154792802.1|1087372_1088719_-|PQQ-binding-like-beta-propeller-repeat-protein
MGGAPGDYDEFTLAAENVPAEADFPVDAGEPGPRRRPSQVTTSSAPAWVAAAVSLIVVGVLTVPPVQPAWGVVAEADLAQAPDEVWSVPMPNLTSWLDTPRVAVFEDRVVVGTWSTVTGYDDADGRAIWSVSEPGMTCAWEFEPLLCRAGRDVDAAILRIDVADGTVTRTPMPGALLVTQSDGDIIALRQDADGQRVVRLQGSDPLAEPRWSTLIGPGLRGEPYAPVLRVVDGEVFVSVFAGFVLDAQTGEIRLDRGFVYELPGVIVALEAGNSGGRQVVTDGESSVEPVPIAPYGVTMPVDDDPDSDVVFQVRGGTLDALTRTTGEPLWSLPQAYPYPFARLDGRVLVYTDSALFGLVEQTGEQIWTTTANRGRLAWCACVGAGDTVLVGISDTGGRTSLAGLDTGTGALRWRVPTVGDYPLDVAPVGDHLVLLTNTSLTLWQFESE
>NZ_CP046175.1|WP_154792801.1|1086885_1087353_-|hypothetical-protein
MASLDHGEEFVLGEPDGGMADGPGTTHRVVSWTHHARPAFAFAALGTALIVAGIYAAPVTLARALADRPEALELSQDTGFTPTQYLNFSAALAGLGWMGSSCSGSLESDEHGAPDPTRPSGEWVCTAGRYQGVAYIDADTGKWTVLGGARSWLVG
>NZ_CP046175.1|WP_154792800.1|1086551_1086770_-|hypothetical-protein
MGGADDGTPNGPAGAVPVTAASGRAHLAAVAPAVWIVAGLALIVAGTLAALTVLPRTAAAASRHPRRRCRSG
>NZ_CP046175.1|WP_154792799.1|1086351_1086555_-|hypothetical-protein
MTATDPLATVRYTPLVDALDDVDWSGVVTCTDPGDGPLSCVSAREGDILINTDSGKWLLSSGPRPGA
>NZ_CP046175.1|WP_168217758.1|1085558_1086023_-|hypothetical-protein
MIIDERSIRGLDRRTGTDQWSVPALAPRCTDDAVRLTCVTGQGDDAQVLLIDPLSGEVGAAGVPGVEHAVAAGADLVLIRTVAAGYEVARFDGAARALVDEQPRSWGLTTGVKARRSSPAWEQRTLLAHRSGTPPSHQEYRNGSRASRSSTRKC
>NZ_CP046175.1|WP_168217757.1|1084875_1085565_-|PQQ-binding-like-beta-propeller-repeat-protein
MLISVGREVDRATHRTEPQGLILDVTTGAVLSEPERIVPGSLSIPDWRVSGPDGTVLYSRHREPLTIPADQADLQLDDDPLSGTQIAAEEIAPGASDRFPIDTVASAAESGETLWSRPGEMPVARLAGRVLTTDGTGRLRGIRESTGALDWSLPTDALFTCPCVGAGSVIAGRTYDRTSSGTSPLIGVDVHTGRQIWELQIAESWQLSMSAGDRFFTAGEGVLTAWEVG
>NZ_CP046175.1|WP_154792808.1|1094316_1095339_-|substrate-binding-domain-containing-protein
MPSVTLSDVAREAGVSLATASRAINGSANRTVRPELRERVLAAAAALHYSPDANAQAMARGRTTTIGLIVHDIADPYFSSIASGVTAAAEQAGLMVTLASTGHDPEREIAFIEVLQSQRARAIVMAGGRTDDEAVNDRLRAALAAYRAGGGAVAMIGQPLFDVDTVVIENAAGAADLAGALHGAGYRRFAALAGPAGHLTARDRLDGFVAGLAGHDATLAPDHIVRSAFTRDGGYEGMRQLLESGAAVDVVFAVNDVMAVGAMAAARDAGVAVGTGIGIAGFDDIVTLRDLTPSLTTVRVPLLEVGTAATELTLAEPAPEPRVQQVASTVVLRDSTPPRN
>NZ_CP046175.1|WP_154792809.1|1095498_1095858_-|hypothetical-protein
MHVRPATTADVETSRGRFDDLLPDRWRGGNNRRSFVAVDPDGRVLGHCRGIDNDFHPASRVLVLEVLPDVEQVPGPEPGGSWTAIVAIGVPGGRVPVPLPCDLLPEGAAWIRRMAQPGS
>NZ_CP046175.1|WP_168217759.1|1095897_1097241_-|MFS-transporter
MTASLGTSPKTLEPLGRRFVALFASTASSNLADGILLVAVPLIGLGLTTSPLRISLLSAATWLPWLLLGLYAGALIDRGDRRRIMLVAMALRMVVLALATGAALAGALTMPVLLGLLLVFGAAEVFADTAAGTLIPAVTPRSRLASGNGRLLGVQQVANQFVGAPLGGFLLTAGPAWAFGVPGLLCGIAIACIGLGLRGSYRAGDHVGGARVSEPAARGPKDAAPAESMGARIRAGLHYLLAHPVLRPLVITGAAMNLANTAYFAVFVLWLVGPTSAVGLSEQMYAILITTVAIGAVLGSVLAEHLLGRITETRLLAIVWIVNSALLAVPVLLPNAWAIGTAFVVIGFTNMVGNVITRAMRQRLIPDVMLGRVGGASATLMYGTMPVGALLGGAVGEAFGLPAVFLGAVAVCLIFVAYAIARVTPAVVARADADRAALEDAAVGTGD
>NZ_CP046175.1|WP_154792811.1|1097342_1097915_+|helix-turn-helix-domain-containing-protein
MEELAHEPRLDAAAMKAFAHPLRLRMFSVLSNGGPATATRLAERLGENTAQTSYHLRQLERHGLVEEDTSLGKGRERWWRAASFSMQRTNEGAGPVQAILRSAIVEDQAATLQTWLSDDAAPQEWVVASLEQSTTAVLTASELAALNREVQEVIDRHTSAGSGREAALREGSAGLRRIRVYYDGFPLPVD
>NZ_CP046175.1|WP_154792812.1|1097964_1099155_-|ROK-family-protein
MRGNGGRGGGAVRQETLREHNLSLIARTVMSAPTPPSRADVATATGLTRATVSRLVTELIEGGLVAEDAPLTAGLAGRPAIPLRPAPGTVGALGLEVNIDYLGARVLDLSGTVLGEATRERDLRGSDPAQVLAELGALGTEAVATAGGTRLAGTGLALPGLLRGGVLLRAPNLGWTDVTPADLLGAPIPGGRLHLGNEARFAAGAELAAGSGGDSFLYLSGSVGIGAAIVHGGEFFAGEHGWSGELGHVCVDPTGPACRCGATGCLETYAGTAALLSRAGLPDDARPPDLVAALAAGDPAARGAVDAAARALGTAVGAFINLVDVSEVVLGNTFAPLTEHLRPELERELSVRVLAAPWAPAQVRASVAGDRPALTGAARAALATVIEDPSAWLASA
>NZ_CP046175.1|WP_154792813.1|1099234_1100416_+|xylose-isomerase
MVRTPTADDKFSFGLWTVGWTARDQFGEATRPALDPREYATKLAEVGAWGITFHDDDVVPFGSDDATREQILTDFKKTTDEAGLVIEMVTTNLFSHPVFKDGGFTSNDRSVRRFALRKVLRNVDLAASLGASTFVMWGGREGSEYDGVKDVNAALNRYRESVDIVAAYIKEKGYGLRIALEPKPNEPRGDILLPTVGHALGFIAELEHGDIVGLNPETGHEQMAGLNYTHGLGQALWSGKLFHIDLNGQRSIKYDQDLVFGHGDLLSAFFTVDLLENGFPGGGPTYDGPRHYDYKPSRTEGLEGVWDSARANMETYLLLAEKAKAYRADPAVQEAFVTSGVLELSESTLGEGESVADLLADRTAFEDYDADAAGEREYAFVRLNQLAIQHLIG
>NZ_CP046175.1|WP_154792814.1|1100426_1101872_+|xylulose-kinase
MTSTSQQLVAGVDSSTQSCKVVIRDARTGALVRFGSAPHPDGTEVDPEAWWDALQVAIGAAGGLDDVEAVSVGGQQHGMVALDADGAVVRPALLWNDTRSAQAALDLIAELSDGTPGSGERAWAEATGSVPVASYTITKLRWLAEHEPENAARVEAVALPHDWLTWRLAGDGPGTDGLSRLTTDRSDASGTGYFDAARNAYRFDLLERAFGRRIGVPAVIGPSEQARSRDGLVLGAGAGDNAGAALGLGLGRGDVAISIGTSGVVSAVSQTPTADASGLVSGFADATGLFLPLTATLNGSRVLDAMGALLGRPHREFAELALSAPAGSDGLVLVPYFEGERTPNKPDATGAIHGVRLGNTTPAHLARAAVEGLLCGLADGLDALRGQDAEVDRIVLIGGAAQSEAVRRIAPSVLGLDVTVPKPGEYVADGAARQAAWVLLDEDEAPRWPLAGEQTYSADGATPGLRERYALARELTLTAER
>NZ_CP046175.1|WP_154792815.1|1101873_1102230_+|cupin-domain-containing-protein
MRRFELPRRTIEAFGSAGVEMDFLPRVAGAAETSVHLATVEAGGTIGVHRATKSQVFAVIAGAGEVADTDGVRVPLSAGQLVIWEAGEMHQSWATTAMSVVIVESDGRFETTEHHREL
>NZ_CP046175.1|WP_154792816.1|1102282_1103032_+|di-trans,poly-cis-decaprenylcistransferase
MVRTAGRPWWRSRDVGVDAVPEPIRPRHVGIVMDGNRRWAKAIGQAPSVGHRAGADHLGEVLDWLRTRGVDHVSVFVLSADNIRKRSTAEVGYLFELIESVLPATIERTRHWQVHLSGDLALLSPGARRALRRAVESSRGRAGHLTLAIGYDPHADIVAGVRAALADGAAELDGAGLVEAIGERMPGGPVRDIDLVIRTSGERRISGFFPWQAARAEIVFSPKMWPAFTEADLDVALAEYGRRRVAADT
>NZ_CP046175.1|WP_154792817.1|1103069_1104272_-|tyrosine--tRNA-ligase
MNDSQAVLTHLGRTTDQIFGRTDLIDRLASGRPMRIKFGVDCTAPDLHLGHAVNLWMMRYLQDLGHVVVFLLGDTTTRIGDPTGRNQTRPVLTPDEIETNAQAFLRQVTMVLRDDPEVLEIRRNSEWFGSMSIADLVGELGLVTHAQLIARDMFKARIREGQEIGVHELIYPVLQGYDSVALGSDLTIVGSDQLFNETVGRDLQTKHGQRPQTVITSTITPGLDGGAKQSKSLNNYVALAHSPSEKFGRLMTLQDDLIGAWARVYTDLPDAVVKDLESRARQGGASSRDAKLDLAEAIVARYHGSVAGGRARAEFTRVFSGHGLPDGVPHLTVPPTSAVLEIVLAARPELSRNAARRLIADGAVSLDSAPLRDGDARPAISPGAILKVGRRNWFEVVVGP

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Crispr_ID: NZ_CP046175_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046175_3

1465550-1465611

Orphan

Consensus_repeat	Method
GTGCCGCCGTCGTTCTCGGCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046175_3

>merge|NZ_CP046175|3|1465550-1465611|CRISPRCasFinder
GTGCCGCCGTCGTTCTCGGCGCGGTCCGGACCAGCCGCCGTGCCGCCGTCGGGACCGGCCCC

>NZ_CP046175|3|3|1465550-1465611|CRISPRCasFinder
GTGCCGCCGTCGTTCTCGGCGCG	GTCCGGACCAGCCGCC
GTGCCGCCGTCGGGACCGGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046175.1\|WP_154793090.1\|1450433_1451222_+\|DUF3152-domain-containing-protein	unknown	unknown	gnl\|CDD\|371483
NZ_CP046175.1\|WP_154793093.1\|1460889_1462959_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273429
NZ_CP046175.1\|WP_154793092.1\|1459458_1460427_+\|NAD(+)-diphosphatase	unknown	unknown	gnl\|CDD\|225373
NZ_CP046175.1\|WP_154796579.1\|1454798_1457981_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223288
NZ_CP046175.1\|WP_154796581.1\|1467222_1468266_+\|signal-protein-PDZ	unknown	unknown	gnl\|CDD\|226011
NZ_CP046175.1\|WP_154793103.1\|1476945_1477962_-\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|223786
NZ_CP046175.1\|WP_154793096.1\|1464927_1465455_+\|DUF45-domain-containing-protein	unknown	unknown	gnl\|CDD\|320703
NZ_CP046175.1\|WP_154793095.1\|1463791_1464823_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238769
NZ_CP046175.1\|WP_154793100.1\|1473487_1474870_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|130740
NZ_CP046175.1\|WP_154793101.1\|1474796_1475546_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154793102.1\|1475542_1476877_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP046175.1\|WP_154796580.1\|1460469_1460694_-\|mycoredoxin	unknown	unknown	gnl\|CDD\|131255
NZ_CP046175.1\|WP_154793105.1\|1478455_1479292_-\|DUF4129-domain-containing-protein	unknown	unknown	gnl\|CDD\|379261
NZ_CP046175.1\|WP_154793091.1\|1451262_1454619_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|378929
NZ_CP046175.1\|WP_154793094.1\|1463364_1463751_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP046175.1\|WP_154796582.1\|1468324_1468861_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154793089.1\|1450043_1450286_-\|DUF3107-family-protein	unknown	unknown	gnl\|CDD\|378634
NZ_CP046175.1\|WP_154793098.1\|1469006_1472003_+\|COG1615-family-transporter	unknown	unknown	gnl\|CDD\|377101
NZ_CP046175.1\|WP_154793099.1\|1472663_1473209_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154793104.1\|1477958_1478459_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP046175.1\|WP_154793090.1\|1450433_1451222_+\|DUF3152-domain-containing-protein	gnl\|CDD\|371483	pfam11350, DUF3152, Protein of unknown function (DUF3152). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	7.61094e-34
NZ_CP046175.1\|WP_154793093.1\|1460889_1462959_+\|AAA-family-ATPase	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	3.3562e-90
NZ_CP046175.1\|WP_154793092.1\|1459458_1460427_+\|NAD(+)-diphosphatase	gnl\|CDD\|225373	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair].	5.96842e-65
NZ_CP046175.1\|WP_154796579.1\|1454798_1457981_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	2.3748e-96
NZ_CP046175.1\|WP_154796581.1\|1467222_1468266_+\|signal-protein-PDZ	gnl\|CDD\|226011	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].	2.88057e-50
NZ_CP046175.1\|WP_154793103.1\|1476945_1477962_-\|AAA-domain-containing-protein	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	5.86252e-96
NZ_CP046175.1\|WP_154793096.1\|1464927_1465455_+\|DUF45-domain-containing-protein	gnl\|CDD\|320703	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin. M48 YhfN-like protease is considered as a CaaX prenyl protease 1 homolog, with most of the sequences in this family as yet uncharacterized. It contains the zinc metalloprotease motif (HEXXH), likely exposed on the cytoplasmic side. It is probably associated with the endoplasmic reticulum (ER), regardless of whether its genes possess the conventional signal motif (KKXX) in the C-terminal. Proteins in this family proteolytically remove the C-terminal three residues of farnesylated proteins. This novel family of related proteins consist of the soluble minimal scaffold similar to the catalytic domains of the integral-membrane metallopeptidase M48 and M56, thus called minigluzincins.	3.01864e-21
NZ_CP046175.1\|WP_154793095.1\|1463791_1464823_-\|hypothetical-protein	gnl\|CDD\|238769	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.	5.25989e-07
NZ_CP046175.1\|WP_154793100.1\|1473487_1474870_-\|FAD-binding-protein	gnl\|CDD\|130740	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.	2.52281e-42
NZ_CP046175.1\|WP_154793102.1\|1475542_1476877_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	8.67238e-18
NZ_CP046175.1\|WP_154796580.1\|1460469_1460694_-\|mycoredoxin	gnl\|CDD\|131255	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.	9.64579e-31
NZ_CP046175.1\|WP_154793091.1\|1451262_1454619_+\|AAA-family-ATPase	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	2.72091e-34
NZ_CP046175.1\|WP_154793094.1\|1463364_1463751_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	3.58053e-12
NZ_CP046175.1\|WP_154793089.1\|1450043_1450286_-\|DUF3107-family-protein	gnl\|CDD\|378634	pfam11305, DUF3107, Protein of unknown function (DUF3107). Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.	1.49073e-29
NZ_CP046175.1\|WP_154793098.1\|1469006_1472003_+\|COG1615-family-transporter	gnl\|CDD\|377101	pfam03699, UPF0182, Uncharacterized protein family (UPF0182). This family contains uncharacterized integral membrane proteins.	0
NZ_CP046175.1\|WP_154793105.1\|1478455_1479292_-\|DUF4129-domain-containing-protein	gnl\|CDD\|379261	pfam13559, DUF4129, Domain of unknown function (DUF4129). This presumed domain is found at the C-terminus of proteins that contain a transglutaminase core domain. The function of this domain is unknown. The domain has a conserved TXXE motif.	6.74091e-08

>NZ_CP046175.1|WP_154793096.1|1464927_1465455_+|DUF45-domain-containing-protein
MSEREIEGHGTVEVRRSTRRRKTVSAYREAGRTVVAIPSRFTRAEEDAWVNRMLERMAASDQRRRPSDADLAARAADLCAAYLDGLAPPASVEWVANQDTRWGSCTPARRTIRISDRVQGMPEWVLDYVLLHELAHLLVPGHGTDFWHLVERYPQTERARGFLLGISHARDTPAR
>NZ_CP046175.1|WP_154793095.1|1463791_1464823_-|hypothetical-protein
MRIRDGFEVYWREPGASQVGLDPRCAVLLEDLSEGEQQVLEALGRDVDRAALLSLANAHSVRTAAVDVLLERLRVAGVLLEEGTVAGDPDARYWQVAAAAGIEPPGSRLDRVIQVCGVDQLGLRIAVILAQSGIGSVLLQDRSRVRPEDVGAGLFRPGDVGVNRAEVGRAVLRAAAPKVGVTVPARTRPDLVVVVDHGVVDPVPLRVLMREDVAHLPVLVRELDVVVGPLVRPGLGVCLRCVDLYRCEADARWPAVATQVATRPPSGVETSLGWSGAALAAGQILAVLDGRSAVVEGAELALTAWDPIPVVRDWQVHPECGCSPVALGVPSGTPPRTAKGGHR
>NZ_CP046175.1|WP_154793094.1|1463364_1463751_+|WhiB-family-transcriptional-regulator
MPQEHLVQFTSVLDQLTLGGSATTWPLPEQTIDLPISGDQPLPCQDARNQDLWFAEQGADVERAKALCVTCPIRKECLEGAIERREPWGVWGGEVFIDGQVVARKRGRGRPRKDDPYAPSARRDPSAA
>NZ_CP046175.1|WP_154793093.1|1460889_1462959_+|AAA-family-ATPase
MSMSAPTLPGAEELLAALDEDQRAVASQLTGPVCVLAGAGTGKTRAVTYRIAHGVVTGVYNPTTVLAVTFTARAAGEMRTRLRELGVSGVQARTFHAAALRQLSYFWPAAIGGGIPRIVEHKAPLIAEAAGRLGVAVDRIAIRDLAAEVEWAKVSMVTAEDYVAAAARAGRSGAAGQDLTTVARLLSVYEDAKTERHVIDFEDVLLLMVGILAERGDIAAEVRKQYRHFIVDEFQDVSPLQHRLLELWLGDRNELCVVGDVSQTIYSFTGASPRYLTEFGRRHPDATVVRLVRDYRSTPQVVSLANNVLARAGRARSSAAVELRAQRPSGPAVAFETYDDDESEARAVAVRIGELVRGGVRASEIAVLYRTNAQAEAFEQALSQAGVGYLVRGGERFFSRKEVRDAVVLLRGAARSQGETPMPELVRDVLTSVGWAPEAPAARGAVRERWESLNSLVGLADELAASRGADLPEFVAELGERAAAQHAPTVEGATLASLHAAKGLEWDAVFLVGVSEGLLPISLAEGDEAIEEERRLLYVGVTRAREHLQLSYARSRNTGGRATRRRSRFLDGIWPSEEAGGRRHGRHTDSRAGRREALTAAVTEQDADPDLVERLRRWRAEVAERIEKPAFTILHDTTLIAVAAAQPRELRHLAILRGIGPTKLEAYGPAILAVVRGEDPVGNQSEESS
>NZ_CP046175.1|WP_154796580.1|1460469_1460694_-|mycoredoxin
MYSTTWCGYCRRLKTQLKSAGIAYNEVNIEEDPSAAAFVEQVNDGNQTVPTILFPDGSAATNPSLAQVQERLGA
>NZ_CP046175.1|WP_154793092.1|1459458_1460427_+|NAD(+)-diphosphatase
MHSDLLPLARASVDRDAHARVRPGLLEELLADTSTRMLTVDGDRVATTGGDDTALAFVPPSDRADGARLLYLGRDDDGAYLAQILGSEHHAGAGDVDRRTDDPQGSTTGGSVSYAVLREIGWQLGDRDAGLAVGALALANWHHTHSHCPRCGTATEVIDAGWVRRCPADESLHYPRTDAAVIMAITDDTGRILLGHAPQWPDGQFSVPAGFVEPGESLEAAVRREVFEETNVVVGEVTYRASQPWPFPASLMVGFAGRALAIDVRPDGEEITEARFFSADELRTAWTTGTVRLPRPTSIARSLIEEWFGEPLPEVETARRWA
>NZ_CP046175.1|WP_154796579.1|1454798_1457981_+|UvrD-helicase-domain-containing-protein
MLVVAGAGSGKTETMAARVVHLVANRLVAPGEILGLTFTRKAAAELSGRIRVRLRALARAGVEGGDTVEDRPRIATYNSYASAIVRDHALRIGVDPDATLIGDAGRYQLAEQIVAAWHGDIDTPLAPTTIIDAVAALSAELSEHGLEPAQAAAAMQRIAGELLEKAPAGRSQRPMAQTLKVTESLGTRAQLMDLVAAFAERKRRGGVVDFGDQVRLAATIAAAVPEVGEAERSRYRVVLLDEYQDTSIAQVQMLRALFATGHPVTAVGDPNQAIYGWRGAAAGTLFAFPEAFREADGGTARIAHLSTAWRNDTAILTAANRTAGPLRELAAVGGAVRELQARPGAGPGRAVAVFCETAQEEAARIADLLTEQWHPELASAAVLCRKRAQFPVIEAALRAAGLPCQVVGLAGLLSTPEVSDIRAALQVAHDPSRGDAMMRLLTGPSVNLGAADLYALSRWARSQASAWVARSDDDDPDEAPVVLEAAEQASLVEAVDVLPPHAWRTGDGRSLSEGARRRLGRLAAQIRQIRSLTYLSMPELVTATETILDLDIEVLASVPGSVGHARRHLDAFTSAAASFAGDSDAPTLGAFLTYLDVAEDEERGLEVVEAEPDPTAIQIMTVHAAKGLEWDTVVVAGLNEGSFPSIPSRNGWLTAVASLPYELRGDADWLPELDIEGPTTHKEMDLALAEFKEAEGDRLLAEERRLAYVALTRAKRTLMLSGSFWSGDRKTPTAPSVFLTELVGGGLVETGPDWPTASAHEVNPGTGAQTYGYWPEQRDPSAAIAGRWEEIWAGAASDPAGAPDAPVTASGAAWWRDAQLLLAERGAAAHTQVPPPEHLSASAVVGLAADAEEFVRNRRRPIPRRPSVAARRGTRFHAWVEQYFGASSLIEMDALPGADDDAAGSERALAELQQAFLGSPWAARTPVAVEVDIETPVAGITIRCRIDAVFSDGDGVHIVDWKTGAAPRSPEALRARQMQLALYRIAWSRLHGMPLEHVRASFHYVAEAVTVSGDDIAEADVAEVLAQVGPETMLAARPRARIDRSDRPGADVEIVADTLW
>NZ_CP046175.1|WP_154793091.1|1451262_1454619_+|AAA-family-ATPase
MSSAAAPDPSGRPDPSQQAARRAIGAGGHHVVHGAPGSGKTQTALAAFVDALESVDARSANLFLVPTRQRAAVLRDEVARRLRRTTGTALVRTPASLAFAILRLRASHRGEAAPTLITGPEQDQVLAELLAGHLEGEGASIDWPAAVGPETRSLRAFRDELRDLLMRAAEAGLDGPGLAAWGERHGRPEWRAAGRLLTEYTEVTSLGELTPDRGARFDAATIVDEAVGALRSWEREVPGVPRPRWDLVVHDDYQDATMATARLLEAMADDGTRLALFGDPDIGVQGFRGGLPALLHSATLPPARGGPEAGPTAPGLWGAGEHVLETVWRHADPVRTAVATLTASLPTMQETRRRRAQAAGDGSDTVGEVRTAVLASQAQEVAFIARELREQHLHDGVPWSRMAVIVRSGSDIGTIRRGLRTAGVPLAIAAPDRPLRDEPAVRPLLIALECVLADDVDPVAGTELLLSPLGGLDPVSLRSLRRALRQAERTDGGDRHSDDLLAAALTDRATLAALPVRHRRGPQRVAEVLAAGRAALDAPESSVETVLWALWDAAGLAATWQQRALTGGAAADRADADLDAVMALFRAAEQFVDRTARSTPSGFVHHLAAQDFPADTLAARGSLGDSVAVHTPASAAGAEWDVVVVAGVQEDTWPDLRIRDTLLGAADLADIATARHVHLSSGAGAATGGGAGAVGADADAGGAGGAGSTGGAGPRHGSANLIAIRAERNRRARREVYEGELRTFVMACSRTRRSLLVTAVLDTDARPSEFFEALAPDAVEAQNVRSVPSPLDLRGLVGELRAAVRPVLSGAEIRPDQVALASEAAAVLTHLAGHHVDGADPGTWPALTAPTSSAPLWQELTPVTVTPSTVETVAACPLRWALTTSGGRRGDSASQSLGNLVHEIAAAAPHGTEPELLADLDARWHELDLGDGWMGRRDRSRAEEMIRKLAGYQAAHPGRVETEVEFGADLGRVALRGRVDRVEYTGAGVRIVDLKTGSTAISAADAGRNPQLGSYQVAAEQGAFDGEGAAGAALLYVGTSAKSGAVTRDQTPLYDDPEPGWATEMLTAAAETMAGAGFTAQPGPLCRTCVVRTSCPAQPEGSRVTGALGGATTQEGAR
>NZ_CP046175.1|WP_154793090.1|1450433_1451222_+|DUF3152-domain-containing-protein
MRARLLIVAALLVGAVAGWLIAPAVLSGAWPPGTPAVRMAQTIQTDQPEATLPLATLGPPPPTPEPVLSPEQTADLAAGVLGREVPPVAGADLVVVPGSVPAPVPTAPEVVQVRVEVEQGLPVDAAVFAGFVMEVLNDPRGWGAGGAMSFARTDGSAEMRVVLASPTVVDQMCAPLRTVSLYSCGRNGHAALNAERWAIGGEPFLAGGGDITAYRQYLVTHEVGHLLGHPHEQCPAAGSLAPVMVQQSMSLEGCLPNAWPNP
>NZ_CP046175.1|WP_154793089.1|1450043_1450286_-|DUF3107-family-protein
MEITIGIKNVARELNLEISEDGDAVVASINEALAKSADGADGAVLDLTDTKGRRVVVPVAALGYVEIGADEPRRVGFGTL
>NZ_CP046175.1|WP_154796581.1|1467222_1468266_+|signal-protein-PDZ
MTISGLAAFGLLLTMILQPVPFAVQGAGPTFDTLGSVNDVPLITVEGAETYPTEGELRLTTVTTAGGPGFPVDVGSVIRGWLSAGQRVVPVETAVDPSLTQEEQDLIGAQQMSSSQENATVSALTTLGYDVPATLTISGADPDRGAAGTVEEGDVIASIRTPDLPTTTITTYADLDDALEATPPGTTVTLGVDRNGVATDVEILTTDDGSGGSLLGIYLSAEFEFPVEVDIKIENVGGPSAGTMFALGIIDQMTPGALTGGEVIAGTGTMSLGGDVGPIGGITLKMYAAERDGADFFLAPADNCGEVVGNIPDGLEVFRVATLDEARTAVEAIADGNTSDLPVCTAG
>NZ_CP046175.1|WP_154796582.1|1468324_1468861_-|hypothetical-protein
MTPRERSLTMAVIEIEQHSAAAGWDAPVSVFALIRTADALADNPALAQEFPPEVVEAARHDPEHLTSIEQDGLPESTNLEELLAQLAWPETVAGAAIVVERIVVPPEAEANMPQDPDAGVDYLMNHPDRQDVRIAAGRLRTGESWCALRSRANDNDDAVAGGPDAVPGLVEALAATLR
>NZ_CP046175.1|WP_154793098.1|1469006_1472003_+|COG1615-family-transporter
MSFAASRSARSSGGRRQRGVLLPTLLVLVGVVVAFLILARFWTEWLWFDQVGYSEVIRTEWVTRALMFIAGGVVMGGAIWLNLYLAYRHRPMYVPTTQQQQDLDRYREAFEPLRRIAFIGGPILAGFFAGSAASTQWQTALLALNGQEWGTTDPQFGIDLSFYMFTLPFLRFIVSFLMTTTFFCAVAAVFTHYLYGALQPMGRGEKISRPARIHVAILAAVFTLLIAINYWLDRYSLLSNDGDRFSGASYTDINAVLPAKAILAVIGVFVAVLFIYTGVRGNWRLPAVGVSLMVVSAILVGGIYPAIIQGVRVGPNEQALEATYIQRNINATREAYGLTDVQVQPYSAETVAEAGALREDAESTASIRLLDPQEVSPTFRQLQQNKQYYNFPATLSVDRYTIDGQSQDTVIAVRDLDLAGAGQSNWVNDHTVFTHGFGVVAAYGNTVTSDGRPAFFESGIPSTGIFGDTYEPRIYFSPNSPEYSIVGAPEGTPPWELDYPDDSAPNGQVNNTFTGDGGPSIGNIWNQALYAARFGSEQILFSDRVTSESQILYNRDPLERVARVAPFLTLEGSTYPAVVDTDDDGMKEVVWVVDAYTTSNEYPYSARQELESAITDSLTESGEVPVAALPDYINYIRNSVKAVVDAYDGSVTLYAWDPEDPILATWDAIFPGKIQPISEISGDLMSHLRYPEDMFKVQRELLTQYHVTDAESFFTTADFWRVPNDPTSDAEVPQPPYYLTLALPEQDQASFSLTTSFIVDDDTRNVLTGFLAVNAEPGNTPGEVAEDYGTLTLLELPRDETVPGPGQVQGNFDSDAAAANELNILGRGGSEVIQGNLLTLPVGGGVLYVQPVYVQSSGGTQYPLLRRVLVAFGDEVGFAQTLDQALDQVFEGDSGANAGDADVDPTPDEGTGTGGGEGTETPDVDAQQRLNDALAAAGAALTASDEALASGDWAAYGEAQTQLEEAIADAMAAEQELAGAAPADDGATEEPTDTATTG
>NZ_CP046175.1|WP_154793099.1|1472663_1473209_+|hypothetical-protein
METWQFIGIALLVIALLASPLWKGLLTSRAQRAGENAGRAFAAKRLPTALDALSTTLDLRTDAGTATEVINAAVAAKPKKAAAAGPGQWYVTFADRDDIHVRLTGVPGGVRLAVVKTIEFQEFPQGGGDWAKFRERVVAAAQARGVATTQGASPHLQRIADPSGRETLGGARASIWVASVA
>NZ_CP046175.1|WP_154793100.1|1473487_1474870_-|FAD-binding-protein
MHRRRTAASRRLPGRRGGRWTPTPDLDARALLPHQTAPDQEHPLDNRRAEPGTTWAGTHAYTAATLHRPDTLDEVRRIVAAASHIRALGSRHSFHDLADSPGDLISLERVDPEIDIDPDARTVTVGAAVRYGDLAVALDRAGWALGAMASLPHISVAGATATATHGSGDATGNLASAVVRLELITADGDQLTLSRGDADFPGAVVHLGALGIVTRVTLAVEPRYEVRQWVRRDVPWEDLLGDFDAITSAAQSVSVFTRFGDIAGRVWMKSRDAAEPDAPWGVPATVEQHPIDGLDAVNCTAQLGRPGPWYDRLPHFRMGFTPSVGAEIQSEYLVPRAHAVAAITALRGLGEAMAPVLQVSEIRTVAADDLWLSAAEGGDRVAFHLTFAREPDAVRALLPRIEDALDPFDARPHWGKWFTTGPGRLATLYPRLGDFAELAGRLDPQGCFRNDYLDRTVLPR
>NZ_CP046175.1|WP_154793101.1|1474796_1475546_-|hypothetical-protein
MSAPGRLSSVRQWMFGWDVDTPRERPLPPVEIDVGRWVPAWVVRVVAGLAVLAAGPILTADPTQLALAAALGVGVAIGPQGAIPMIALVAGIVAFAAREPSPAVGAGLLLCLHGMHYLTRRVSGLSPRARVELAALRRGLVPALVVQGFAQLVGVVVWFLPGPASPFPWLAVLALIAITVLVLVGVRALRAVEAGGPGPRRLPAKPSRGTTGSTPAGPGGDRTSSDAPPQDGGEPPAARPTWRSVDPDA
>NZ_CP046175.1|WP_154793102.1|1475542_1476877_-|DUF58-domain-containing-protein
MQSIAAAVIGVAALTLGVIGSRPDVAVLGLPFVLGFAWAWFTRPTSTSSQALGQATDRRGAGTDAAADGLIGTVSADLVLDPAPGAEVLRVRVSSAGHREGQALIDVGRPGPRTVRLHLDTARTGVQPMFRTDLVWSSYDQTMVAGPSRLGPLRVTVYPTAIPLRRLPMPRRLQGLTGPHTSRRVGDGTDLHDVNLFTPGDRLRRIDWRVTARRSLDVTTGRLGELYVRRTFATADATIMLVVDSRDNVGPDVDTWGGGKEARVDEPTSLDLAREAATSLAKRYVDGGDRVGLDDLGLRRRPVAPAGGRKQLDRITQRLATIAPEGSPTARERAPQVPSSALVVIFSTFLDDEAARMAHQWHAQAHRVIAVDVLPQVRDHHLDSYQRTAYALVRLERGIRLERLRRTGVEVVHWVGDPDGHGSSTSADIDLLVLSRPGHRVRTR
>NZ_CP046175.1|WP_154793103.1|1476945_1477962_-|AAA-domain-containing-protein
MTTPSATPDDAAPLPIEQVARSGAAVLAEVGTVVVGMEAPLRIALASVLAGGHVLFEDVPGLGKTLAARCLAAALGLDFRRLQCTPDLLPADITGSFVYDPTSSEFVFRPGPVFTGLFLADEINRTAPKTQSALLEAMAERQVTVEGTSYRLQRPFHVMATSNPVEYEGTYPLPEAQLDRFMVRLSVGYPHPDAEVDVLARRVARRREEAQVRAVVDAATVRGMQAGVEAVEVDPDILRYCVDLAVATRAHPAVEVGASPRGSQALLLIARAMAVLDGRAFVTPEDVKAIAVPALAHRLVLTPSAWASGTVPEAVVTALLDEVPGPASAGVAAGRAGR
>NZ_CP046175.1|WP_154793104.1|1477958_1478459_-|hypothetical-protein
MSGQPDNGRRRRLWVWPVVVGVGGPVLAFTIGLDVAHSLMIGLAVALVVAGSRVIGLGDQAVWPRLPFGRRDGARRDVSSLSWSLYGQQRELTGSGRRRLRRVCLDTLELAGYSLDTPDGVRAVEDLLGRPVTAFLIDEDQPAPDLRGVQRTLTALTAVPLRKAHR
>NZ_CP046175.1|WP_154793105.1|1478455_1479292_-|DUF4129-domain-containing-protein
MTAPGGPEAGDDAGPGSTRPDEPSRPPSLLPIVAAGRTALVAAVCLFAVLAATAVGPWEITERWQVDVPTAEPPSVTGSEQQPTPDPTPTMPAFLEDLPVPDLSWLGLVAGLVAAVVVIALLMRYLAYLRRPLEDEADAQSRLVGGEVADAEPELPVLEQGVSAALKHLDQIREPRDAIVAAWLALEDAAARSGVVRAPAQTPTEFTAGVLDRTEADPHATATLLRLYHRARFSTAPVTADDVTTASTCLADLARSWTALQAARRDAGSRRPAPEEQE

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Crispr_ID: NZ_CP046175_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046175_4

2742464-2742580

Orphan

Consensus_repeat	Method
GCACCGACGGCAGCACCAGCACCGACGGCAGCGATGGCACCGACG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP046175_4

>merge|NZ_CP046175|4|2742464-2742580|CRISPRCasFinder
GCACCGACGGCAGCACCAGCACCGACGGCAGCGATGGCACCGACGGCAGCGATGGCACCGACGGCAGCACCAGCACCGACGGCAGCGATGGCACCGACGGCAGCACCAGCACCGACG

>NZ_CP046175|4|4|2742464-2742580|CRISPRCasFinder
GCACCGACGGCAGCACCAGCACCGACGGCAGCGATGGCACCGACG	GCAGCGATGGCACCGACGGCAGCACCA
GCACCGACGGCAGCGATGGCACCGACGGCAGCACCAGCACCGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046175.1\|WP_154794147.1\|2745336_2745786_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|238612
NZ_CP046175.1\|WP_154794138.1\|2733036_2733951_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224594
NZ_CP046175.1\|WP_154794153.1\|2750489_2751416_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366293
NZ_CP046175.1\|WP_154794149.1\|2746629_2747019_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP046175.1\|WP_154794146.1\|2744552_2745161_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|376405
NZ_CP046175.1\|WP_154794151.1\|2747713_2748541_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154794150.1\|2747015_2747486_+\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|176868
NZ_CP046175.1\|WP_154794139.1\|2733970_2734318_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378276
NZ_CP046175.1\|WP_154794154.1\|2751558_2752428_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_168217828.1\|2738782_2739709_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP046175.1\|WP_154794155.1\|2752502_2753417_+\|RNA-polymerase-sigma-70-factor	unknown	unknown	gnl\|CDD\|132002
NZ_CP046175.1\|WP_154794148.1\|2745826_2746429_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154794152.1\|2748623_2750123_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP046175.1\|WP_154794141.1\|2735626_2736634_+\|SIP-domain-containing-protein	unknown	unknown	gnl\|CDD\|99790
NZ_CP046175.1\|WP_154796701.1\|2737769_2738786_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|227119
NZ_CP046175.1\|WP_154794144.1\|2740913_2741648_-\|chloramphenicol-phosphotransferase	unknown	unknown	gnl\|CDD\|226412
NZ_CP046175.1\|WP_154794142.1\|2736711_2737728_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|376439
NZ_CP046175.1\|WP_154794140.1\|2734423_2735518_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154794143.1\|2739804_2740830_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238566
NZ_CP046175.1\|WP_154794137.1\|2732322_2732994_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP046175.1\|WP_154794147.1\|2745336_2745786_+\|nucleoside-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	3.64956e-36
NZ_CP046175.1\|WP_154794138.1\|2733036_2733951_-\|serine-hydrolase	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	5.55642e-31
NZ_CP046175.1\|WP_154794149.1\|2746629_2747019_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.3995e-15
NZ_CP046175.1\|WP_154794146.1\|2744552_2745161_+\|nitroreductase-family-protein	gnl\|CDD\|376405	pfam00881, Nitroreductase, Nitroreductase family. The nitroreductase family comprises a group of FMN- or FAD-dependent and NAD(P)H-dependent enzymes able to metabolize nitrosubstituted compounds.	1.44009e-24
NZ_CP046175.1\|WP_154794153.1\|2750489_2751416_+\|hypothetical-protein	gnl\|CDD\|366293	pfam00769, ERM, Ezrin/radixin/moesin family. This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins.	0.000893133
NZ_CP046175.1\|WP_154794150.1\|2747015_2747486_+\|polyketide-cyclase	gnl\|CDD\|176868	cd07826, SRPBCC_CalC_Aha1-like_9, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	2.1622e-62
NZ_CP046175.1\|WP_154794139.1\|2733970_2734318_-\|hypothetical-protein	gnl\|CDD\|378276	pfam09851, SHOCT, Short C-terminal domain.	9.34848e-06
NZ_CP046175.1\|WP_154794144.1\|2740913_2741648_-\|chloramphenicol-phosphotransferase	gnl\|CDD\|226412	COG3896, COG3896, Chloramphenicol 3-O-phosphotransferase [Defense mechanisms].	8.07651e-43
NZ_CP046175.1\|WP_154794152.1\|2748623_2750123_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.53542e-84
NZ_CP046175.1\|WP_154794141.1\|2735626_2736634_+\|SIP-domain-containing-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	9.12468e-72
NZ_CP046175.1\|WP_154796701.1\|2737769_2738786_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|227119	COG4779, FepG, ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism].	4.64818e-63
NZ_CP046175.1\|WP_154794142.1\|2736711_2737728_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.86442e-75
NZ_CP046175.1\|WP_168217828.1\|2738782_2739709_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	5.73722e-130
NZ_CP046175.1\|WP_154794143.1\|2739804_2740830_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	3.43386e-45
NZ_CP046175.1\|WP_154794155.1\|2752502_2753417_+\|RNA-polymerase-sigma-70-factor	gnl\|CDD\|132002	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.	3.17923e-106

>NZ_CP046175.1|WP_154794144.1|2740913_2741648_-|chloramphenicol-phosphotransferase
MSTVVILNGVPRSGKSSIARAIQDGLDGVWLNLGVDVFQTATPANRQPGIGLRPGGERPDLEDYVATAYRAMFASIAAHVQRGLNVVTDVGLHDDYSAPLAIRREAAEILQGLPVLFVGVRCPVDVVRQRRRDTWGGTGVAGVADVGGQAGVRGTGSLPGSTAGARTDDPVLRWERAVHSPGRYDLELDTSQLTPQECAERIAACLRTATPLSSAAPPGTAASPEPAAPTSSAAPPPSAFFDLS
>NZ_CP046175.1|WP_154794143.1|2739804_2740830_+|ABC-transporter-substrate-binding-protein
MSRRPIYLVAAATLTTLALAACSGGDGSGDDPTDGGSAAGGDWETVTIEHALGTTEITEAPENVVTLGWGSTEAALALGVVPAGIEAQTYAVNDEGLLPWVAETLDEQGASPTIIPATVEEPAYEDIDDLNPDLILAPYSGITQEQYDLLSEIAPTVAYPDAPWTTPWRELITIVGQSLGLDEEAATVISDLDAEVAAVAEAHPELEGITVAAVWDIGGTFYVYKPADSRVDFLLDLGLVSAPSVEALDSGGDTFVYSLSYEQTDQLDAQLIVNYASTEAEVETFLAQSYAQAIPAVQAGAIANITGDALIAAMSPPTALSLTWGLEDYATTISEAAANVQ
>NZ_CP046175.1|WP_168217828.1|2738782_2739709_+|ABC-transporter-ATP-binding-protein
MSILNTTTDQGGADHGTHGPPSGREQGSEPKAEHTLLAQGLSLAYDGAPVVHDLDLEIPPGRITVIVGGNGCGKSTLLRGIARLLRPSAGEVLLDGTAVHDRPAKDVARIIGILPQSPTAPEGITVADLVGRGRYPHQGWFRQWTSTDDAVVTAALAATDTLELAARRVEELSGGQAQRVWIAMALAQDPDILLLDEPTTFLDVTHQLEVLDLLHELNRTRGATVVMVLHDLNLAARYADHLVVMHAGQVQAIGSPADVLTPELVAQAFKLRARVVPDPVCGSPMVVPIGRFHGSEPELVLPPPAGAP
>NZ_CP046175.1|WP_154796701.1|2737769_2738786_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MLRAARNEAAGRVRTITLVLICLAVGLALATLVWDGHASDLWNQFLGIFGAGNGDGAFTITKLRLPRVVLSVLVGVAFGLSGALFQSVLRNPLASPDIIGISGGASLAAAFGLLVLGVGGIVLSVFAFAGAIVVAAAIYLLAWRDGVSGYRFVLIGVGIAFAVNAGIGYLLTRSEVNDVRSALVWMVGSIGTPPWRDIAVLAVGMLVLVPLVGVSVGRLRILQLGDETAGGLGVSPERARLAVLAVAVGLAAVATAFAGPVAFVAFVSAPIARRLLPTAGLALVPSALVGTVVVLAAEFTAQNVLGALEVPVGIVTGIIGAPYLLWLLATSNRGGRGA
>NZ_CP046175.1|WP_154794142.1|2736711_2737728_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MSRTRGTRLLGLAAAVGLLALTVAASLAFGNRDIPLDVVFAALTDRLPGDVLHNIVWDQRLPRTFVGLLVGAALGVAGTLMQGITRNPLADPGLLGVNAGASLFVALAISVFGITSPSGYVWFAFAGAAAAAAVVYAIGAIGREGATPVKLALAGTALTAGITSIITLILISSTETTNAFRFWQVGSLASRGTGTWGLSWVLLVLLAIGLALALLSGRSLNLLAMGDDLARGLGANLGVARGVAAVSIVLLAGTATALAGPIVFVGLVVPHIIRPVIGGDYRWILVYSLFVGPALLLAADVVGRVIARPGELEAGLVVALVGAPVMIAIVRRVKLAGL
>NZ_CP046175.1|WP_154794141.1|2735626_2736634_+|SIP-domain-containing-protein
MLTSLPDAGARPDVVKDDRPAYRPFAVQVADIRQLSPHFLRLTFTGPDAHWFGTDRQDQRIKVLIPDEDGNVSEVGADDPEAILAGTWYETWRALPEDGRSPFRTYTVRDVRPEQGEFDVDMVAHGDAGPASRWLGRVQVGDRLVIVGPDSRSKDSAVGADWAPGTASELLLAGDETAAPAICSILETLPAGRNARAFIEVPTQADALAVDLPEGARITWLAREQHDHGHLLVPAVSAWVQANAAVVDDALAVVPQAMDDVDVDSELLWDSPVLQVQAIDACGRGERCGSDFYAWFAGEASVIKSLRRILVSDVGVCRRRVAFMGYWRQGRAEGQ
>NZ_CP046175.1|WP_154794140.1|2734423_2735518_+|hypothetical-protein
MTTNEQSPTAADTGQPERPKDPLAVFRRFPTGLVVFLGLIGAGGVALFLANNAKEVLATCGSDGVMVAGDICETRSRRSFNTTTWTYEERLEFAQAQNLGAIVAGLVVVLIALIAIGAVVVRWRRDVAVANQLASQQAPLTAFATTTGLVTGFLTLVAGLLGGFGAFLAVSASGGKGSPAVGLVLGGLMLVAALGVLLAGRPKGCTLVWAYPSAVRVVTESRVHDVPWRDMQYLSTLGKDRSEWLSWAGRKGTLGIDDKEFFAVMQRTINGAVATDVRQRFEAGDTIDFGDVKVSSSTIALKKKQFPVSAIRGITVMRDKNGTYYEFRDQQIKVAGSVGVQTVANADVLFDLLAKRLNISFLNN
>NZ_CP046175.1|WP_154794139.1|2733970_2734318_-|hypothetical-protein
MRPQLWHVLVLLIMVAIAVVLVVIVFAAVRSSRRPGPPTVGPGPQGSGPHPGSGSQPYAGTYGDRPASPGAEGPASLPGAVDPEKRVAALRELAQMRKDGLLTEDEYQAEVRRLG
>NZ_CP046175.1|WP_154794138.1|2733036_2733951_-|serine-hydrolase
MVAVTADANLLTGFRLRNAEQHLGAYGIHVHREGHEPVEHRFRADDRVNIYSGSKTFTAVAVGIAQGEGLLGLDDAVAGFFDGVPTAARNESITVRDLLQMSSGNPFNWFEPASESPTDIAARWLATEPVRAPGERFEYSNASTYLLGRIIHAVSGQDLREFLLPRLFDPLHIATPQWFRCPLGFPEAAKGLHLTTGELARLGRLLLQRGEWEGTALVPAGYVDAMHTDVVDTSHCGDEPEATAGYGYQVWNSTVDGAWRVDGKYGQFSIVLPEQRAVVTITAHNERVPFDLLRAVWDEVLPRL
>NZ_CP046175.1|WP_154794137.1|2732322_2732994_-|hypothetical-protein
MLYSSAPDEQHDRASRAGVGSHTRAAGNPQSFVADLQRSAGNRAVDLWLRGSAISAERRTPPAPGLPVQRYAEQNNAAHTFDAGALVDHTTHLVLRADRLNRPSGADLGKLAANADKQMPPTKKNGPITWKAGTNTGISLMANSERIPDSKRVQVVLTVPDSLQILQTGPADHAEFHTTAVLTAGQIGAALESVTLVDQYHGDVVQRTAEIAAEPEIRSTPTA
>NZ_CP046175.1|WP_154794146.1|2744552_2745161_+|nitroreductase-family-protein
MEFSEVVRRRRMVRSFTEEAIPDEAIERMLSNAVRAPSAGFSQGWAFLVLDMPDDVATFWRVTTPPERAVDSSAWLKGMRTAPAIIVPMASESIYRDRYEERDKGATPRDQQHWAAPFWHIDTGMASLLILQTAVDLGLGACFFGIPKTEHEAFRSTFGAPATFEPIGAIAVGHPAPDDRPGLSARTRKRRPDAEVVHRGRW
>NZ_CP046175.1|WP_154794147.1|2745336_2745786_+|nucleoside-deaminase
MSLSDGEGLALALEEARAGRAEGGIPIGAALIADGEILAVGRNRRVQLGSAIRHGETDCLENAGRLPAAVYRRATIVTTLSPCDMCTGAILLYGIPRVVIGENRTFLGGEDLLRARGVEVVVLDDPACTAMMTDFIAAEPALWNEDIGE
>NZ_CP046175.1|WP_154794148.1|2745826_2746429_-|hypothetical-protein
MTQPPVVPPDPPSRPGPWTDLVVRNMPAAVTATYRPRVSLLSIVLVAWVGVGVGLIVSGNRSIGAGVLAASLVLLAVFVTTLAAWLSRTGTRPVLVINGLDIELCKPRLRLAWHTIQAVEVQPARGWLRTPAMVLRLRVGVSSELPGPARYFHGWAQWHHRRGRGVVVDVTTLDTPLHTIVEAISTASGGSVQVPRTGLR
>NZ_CP046175.1|WP_154794149.1|2746629_2747019_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MDARDDRLNRGFMALADPVRRQIIARLSTGPATVNDLAAPFEISKQAISKHIQVLEQAGLVTRTRDAQRRPVHLDAAALESLTAWIDRYRLLHEQQFRSLDAVLAASDATTGVAAVGDTTESTSELEES
>NZ_CP046175.1|WP_154794150.1|2747015_2747486_+|polyketide-cyclase
MSNATTISAPAGVPFIEITREFDAPVDAVYRAHVEPDLIKQWLGPRGYEMTIDRYDVTSGGGYAYTHVNGDEAYRFRGVFHTARENELIIQTFEYEGFPDAVSIESMTFEALEGGRTRLTGRSVYPTQEARDGMVESGMESGVNDGYERLDELLAG
>NZ_CP046175.1|WP_154794151.1|2747713_2748541_+|hypothetical-protein
MFLLGPGPIPATSEELSQRLSAGLSELMGLGEDAPIKVAATLADDGSVPSVQIDLSGARIRTRGSDRSEPTFTDRQATLLGDLQIQGSPITAEGVPLSASAQVRDLPVAWRHTADGVLWLWPDEDTERDVAPEGHAEASAIIADVTAALKARGTSALARRGFTLKDLTLEVRATTSKSATLRAEATVGKSILSAKAILTGEASFDDTSRMTVRNLKLTSGNPLVAALLSVAKRYTDEWDGRTVDLSQYAFAGARVRDVSISTEGGVVRLRATAGA
>NZ_CP046175.1|WP_154794152.1|2748623_2750123_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MPETAQTPPLNAPPGAPERLAPSTRLVITLLLVSSFVVILNETIMSVAIPNIMADLHIEASTGQWLSTSFLLTMAVVIPITGYLMQRFNTRPIFLAAMTLFSAGTLIAAVSPTFGLLIMGRVVQASGTAMMMPLLMTTLMTVVPPALRGRTMGNVSIVMAVAPAVGPAISGLVLSVLPWKWLFWLVLPIAVAALVLGALRVPNVSTPKPVPLDILSVVLAAFAFGGLIFGLSGLGEAARHAPPIPLAIPIGGGAVALVFFVLRQLYLQRDDRALLDLRVFKSRSYAVSLTMMALLMMSLFGTIILLPLYLQNVLNLETVTVGLMLLPGGLAMGLLGPVVGRLYDRYGPRPLVVPGAVVVSGALWSMTLLTEHSPLGMVLAAHVVLSLGLGLMFTPLFTTALGSLRPSLYSHGSAVLGTLQQFAGAAGTALFVVLMTVAQVNALDAGASEVHATAVGTQTAFTCGAVLSLVVIVAALFVRRPDEPERTADEEHEAPIAVH
>NZ_CP046175.1|WP_154794153.1|2750489_2751416_+|hypothetical-protein
MARDRAEEPLQADAYELYGLPPGEFTAARNTLAATLKADGDTARAAAVKALRKPGMAAWVVNTMVRSMDERLGQLFDLGAQLREAQDELDGAQLRALATSRRRLVGAVVQEGRSLCRSLGQPVSEAVATQVESTLQAAMADADAEAAVLGGLLVEPLLVIGMGPVDLSGAVAIEGAVGIRTGTKHRGAPLSAVVEPTGSAEQVSARLLAEAREEAAEAERKLRRANEAHTKASKRAAKLQAQALRVRSQVEELRRQAFELEHDLEQVERALVTAESEQDGAEVERNRADEEAASARAEVERLRRHRRS
>NZ_CP046175.1|WP_154794154.1|2751558_2752428_+|hypothetical-protein
MGILDRLFGRDEVQPDQPTQPGGPMAAGGRQWTVPVFRSSKDPDSRPTDPQYQQPGTAQHSATGSAEDRRAIERYQYLLRTAPPDQIELAHAEAFASLTHAQRQEIRARLFDVAPAADRPEDDSAQTLARSATRTERRQPGALRRAFGDRGEGFGSSLLSSIAGAYVGTALAQAMFGVVLDGGAPVGGAGPGAQGHAAAGGYEPDGADDGFEAGLVNTGPEVGQRVVGAGANDGERVVGMDANDEQNTVGGAAVRHDGAVDDGSYEAEGIEPGPDLGLGGGGMDFGSGA
>NZ_CP046175.1|WP_154794155.1|2752502_2753417_+|RNA-polymerase-sigma-70-factor
MIADVLSDAPEPAPSDPLNEALDVFMAVRPRLFGIAYRMLGSVSEAEDIVQEAWVRWQRYDRDSVENPAAFLATTTTRLAINSATSAHARRESYIGPWMPEPVDTSADPALGAERGEALEFAILMLMERLTPMERAAYVLRQAFDYPYETIATILEQTQANVRQHVSRARKHLAGERRERVDADEQRQLLAAFLAAAQAGEMAALEELFAGEVVSTTDGDGVKNAARKLMVGRQQVARFIAAFAHHFWVDTEQEWVQANGEPAILVRRDGEPLVLVSLNTGPDGIEQIRWMMAPAKLERIARAG

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Crispr_ID: NZ_CP046175_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046175_5

3411645-3411741

Orphan

Consensus_repeat	Method
GGTGCGTTCGTGCGGCGAATCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046175_5

>merge|NZ_CP046175|5|3411645-3411741|CRISPRCasFinder
GGTGCGTTCGTGCGGCGAATCGGCACCGTGCGTCGCAGAAACGCACACCCGCAGCAGGCAGGGCTCAGCCAAAGGTGCGGTCGTGCGGCGAATCGGC

>NZ_CP046175|5|5|3411645-3411741|CRISPRCasFinder
GGTGCGTTCGTGCGGCGAATCGGC	ACCGTGCGTCGCAGAAACGCACACCCGCAGCAGGCAGGGCTCAGCCAAA
GGTGCGGTCGTGCGGCGAATCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046175.1\|WP_154794676.1\|3405593_3406046_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|234575
NZ_CP046175.1\|WP_154794680.1\|3409723_3411004_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154794684.1\|3413764_3414793_-\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NZ_CP046175.1\|WP_154794673.1\|3400781_3401651_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|223704
NZ_CP046175.1\|WP_154794675.1\|3404250_3405597_-\|DUF21-domain-containing-protein	unknown	unknown	gnl\|CDD\|224173
NZ_CP046175.1\|WP_154794690.1\|3421127_3421970_-\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NZ_CP046175.1\|WP_154794689.1\|3420375_3421041_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154794677.1\|3406042_3407104_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|376820
NZ_CP046175.1\|WP_154794674.1\|3403342_3404254_-\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP046175.1\|WP_168217858.1\|3414818_3415802_+\|DUF3097-domain-containing-protein	unknown	unknown	gnl\|CDD\|378628
NZ_CP046175.1\|WP_154794679.1\|3408168_3409722_+\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|224154
NZ_CP046175.1\|WP_154794678.1\|3407297_3408107_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379240
NZ_CP046175.1\|WP_154794691.1\|3421966_3422899_-\|alpha-E-domain-containing-protein	unknown	unknown	gnl\|CDD\|377234
NZ_CP046175.1\|WP_154794688.1\|3418394_3420308_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP046175.1\|WP_154794686.1\|3416034_3417096_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370676
NZ_CP046175.1\|WP_154796758.1\|3401781_3403176_-\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP046175.1\|WP_154794683.1\|3412579_3413704_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237654
NZ_CP046175.1\|WP_154794682.1\|3411795_3412578_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NZ_CP046175.1\|WP_154794681.1\|3411199_3411637_+\|DUF2809-domain-containing-protein	unknown	unknown	gnl\|CDD\|378530
NZ_CP046175.1\|WP_154794687.1\|3417213_3418398_-\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|180172

Protein	Function_ID	Function_description	E-value
NZ_CP046175.1\|WP_154794676.1\|3405593_3406046_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	2.53262e-60
NZ_CP046175.1\|WP_154794684.1\|3413764_3414793_-\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	9.59982e-134
NZ_CP046175.1\|WP_154794673.1\|3400781_3401651_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	1.69807e-50
NZ_CP046175.1\|WP_154794675.1\|3404250_3405597_-\|DUF21-domain-containing-protein	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	2.06507e-91
NZ_CP046175.1\|WP_154794690.1\|3421127_3421970_-\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	4.22067e-38
NZ_CP046175.1\|WP_154794677.1\|3406042_3407104_-\|AAA-family-ATPase	gnl\|CDD\|376820	pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.	1.42867e-134
NZ_CP046175.1\|WP_154794674.1\|3403342_3404254_-\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	1.63894e-159
NZ_CP046175.1\|WP_168217858.1\|3414818_3415802_+\|DUF3097-domain-containing-protein	gnl\|CDD\|378628	pfam11296, DUF3097, Protein of unknown function (DUF3097). This family of proteins with unknown function appears to be restricted to Actinobacteria.	5.39684e-151
NZ_CP046175.1\|WP_154794679.1\|3408168_3409722_+\|NAD(P)-binding-protein	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	7.64386e-50
NZ_CP046175.1\|WP_154794678.1\|3407297_3408107_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379240	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	0.000718337
NZ_CP046175.1\|WP_154794691.1\|3421966_3422899_-\|alpha-E-domain-containing-protein	gnl\|CDD\|377234	pfam04168, Alpha-E, A predicted alpha-helical domain with a conserved ER motif. An uncharacterized alpha helical domain containing a highly conserved ER motif and typically found as a tandem duplication. Contextual analysis suggests that it functions in a distinct peptide synthesis/modification system comprising of a transglutaminase, a peptidase of the NTN-hydrolase superfamily, an active and inactive circularly permuted ATP-grasp domains and a transglutaminase fused N-terminal to a circularly permuted COOH-NH2 ligase domain.	5.69136e-95
NZ_CP046175.1\|WP_154794688.1\|3418394_3420308_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP046175.1\|WP_154794686.1\|3416034_3417096_-\|hypothetical-protein	gnl\|CDD\|370676	pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members of this family are necessary for accurate chromosome transmission during cell division.	1.49512e-09
NZ_CP046175.1\|WP_154796758.1\|3401781_3403176_-\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.57774e-06
NZ_CP046175.1\|WP_154794683.1\|3412579_3413704_-\|molecular-chaperone-DnaJ	gnl\|CDD\|237654	PRK14278, PRK14278, chaperone protein DnaJ; Provisional.	0
NZ_CP046175.1\|WP_154794682.1\|3411795_3412578_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	2.16771e-67
NZ_CP046175.1\|WP_154794681.1\|3411199_3411637_+\|DUF2809-domain-containing-protein	gnl\|CDD\|378530	pfam10990, DUF2809, Protein of unknown function (DUF2809). Some members in this family of proteins are annotated as yjgA however currently no function for the protein is known.	3.82948e-06
NZ_CP046175.1\|WP_154794687.1\|3417213_3418398_-\|coproporphyrinogen-III-oxidase	gnl\|CDD\|180172	PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated.	0

>NZ_CP046175.1|WP_154794681.1|3411199_3411637_+|DUF2809-domain-containing-protein
MEHPPESPVRAPRRRAAVAVGLVAVIAAGLALQLVRHLPGADVAGTAAYAVAAVLAVTLVRPRCPAWAVAAAGTGAVCAVEVAQLTPLPGAISEAFPAARLLLGANFDPVDLAVLAVAGGLTGLLLAGARRATLNRDLRGTGFPN
>NZ_CP046175.1|WP_154794680.1|3409723_3411004_-|hypothetical-protein
MSNPPVVLIIVLAVLVVGGGIGIFFWRRRVGYIKSLTDRGWVFDSTPALAIAAGLTVPPFGLGFDRSTDEHISGAREGVPFQVFEYKCRVGRFRVAAMRLQLPLPELFLTTVGARPGTQAAQQPSTGQWHVLSDDAEFARAVQAGAGAAVTAFAQANAGIDLSIDGDQLVVLGAPKEAAELDRFLDAMVAIARSLDPRALDAFRRPAPEQWVGFYRRPHWQFRDRDDRLMNVVDVTRGGQNHRIVNVVSCEVGPLPFVAFKHHWQTTRTVTSTDSNGNTTTRTETDNHEESIFDMSLGVPTPYLEVTGNRALGKWFGRGDRVESELAAFNERFDVRSDVPKFASDVIHPRQIEYLMQVQPVPFSMGGGRIRVAVPQHDLAVIDQTVAFMYGFLSRIPEFVWQDLGAAVPDFDGDGRPGPTTYSSAT
>NZ_CP046175.1|WP_154794679.1|3408168_3409722_+|NAD(P)-binding-protein
MATRVAIVGGGHNALVAAAYLAREGVEVTILERSDHVGGAAVSARPFPGVDARLSRFSYLVSLLPPALAGDLGLDLDLRSRPTASYTPYATADGSGGLLVETHPGVATAASFRARTGSDAEYDAWRAFYAGADDLAAALAPTLLQPLPTADHVRASIGPQWWSDLTQAPIGSTLERRFTDDLVRGVVATDALIGTFASLHSPSLPQNRCWLYHVIGGEWRVPVGGMGAVTGELERVARAAGATIVTGASVRSVEADDGGARVTSDAGVLEVDWVLGGVAPYTLAGLLGDEPGPRPQGAQVKINLVLSRLPRLRSGIDPEVAFAGTLHLAESMTELESAHAAMAADARAAVGDDGTPCPGEIYCHTLTDPSILGAELAASGAHTLTYFGLHQLEEGLADEELRERAWRRFLGSITPHLAEPLEPLLLRDSAGRECVELRGPGQIEAELGMPGGNIFHGDLSWPWLEPGRAGEPGSPAHRWGVATDHTRVLIAGSGAVRGGAVSGIGGHNAAHALLELL
>NZ_CP046175.1|WP_154794678.1|3407297_3408107_+|GNAT-family-N-acetyltransferase
MSRVTPTELLTAYDDQLRTEAETPSAVTVERRGPLRLATFVGGRGFVSYRDLDGIGPAAIGDVVGEVLDHYRADPAITRVEWKTRGHDHAPGLHEALVGHGFVPGDPESIMLGELRDLVADVPLPAGVTLRRVSAEADVRAMCAMQNEVFGDPPSDKNAVAILRRLALDDGMELWVAEVDGVIVSAGRLEPVADTEFAGIWGGATRPRWRGRGIYRALTAARARSALSRGKRLAHSDSTEFSRPILERAGLVKVSTTTPYEWRRNGRPE
>NZ_CP046175.1|WP_154794677.1|3406042_3407104_-|AAA-family-ATPase
MDQTSAAEPSEAADGPGAAGAQGAGAQVQHQITIPDSIPMVALLGQRDEVLRAIESGFPTVDVHVRGNLVTLTGRPGEVALAERLVDELSEIAASAQPLSADAVERAIAILTASTNARPAQVLTMNILSNRGKTIRPKTVGQKEYVEAIDRNTVVFGIGPAGTGKTYLAMAKAVQALQSKQVNRIVLTRPAVEAGERLGFLPGTLNDKIDPYVRPLYDALHDMVDPESIPRLLAAGTIEVAPLAYMRGRTLNDAFIILDEAQNTSAEQMKMFLTRLGFGSKVVVTGDVTQIDLPGGTRSGLKVVQEILDEIDDVVFCELTSADVVRHRLVAEIVDAYSRFETRSPAPREGWSR
>NZ_CP046175.1|WP_154794676.1|3405593_3406046_-|rRNA-maturation-RNase-YbeY
MSTEVTNESGYDLDEAEFAALSRFVIDEMHVHPQAELEIRFVPTDVMAELHVRWMEEEGPTDVLSFPMDELRPGTDTELSEEGMLGSIVVCPDVAVEQARVAGHSAEEEMLLLTTHGILHLLGYDHAEPEEEKEMFDLQRRLLLTFLARR
>NZ_CP046175.1|WP_154794675.1|3404250_3405597_-|DUF21-domain-containing-protein
MSDAGPLPLLILLTLAGIGLAALLSAGEAAAGRITRAAAHEAEQSGARGAARVVRIAENHGGVIRAATFTRVLAEMTAAVCLTLILAGVLRQWWLVLLCSVVASAVLMVIVVGISPRTIGRRDPVRVLAWVGPLLLGLETIYAPLVRLTDSLSTRAGRTTLEEREADEDDLRDMVDRVSESHQIDDDEREMLHSVFELGRTMVREVMVPRTDMVTVASGTPLQKAITLFVRSGYSRVPVVGESVDDLLGVLYLKDALRYLTKKPERATAPVDRIMREAVFVPETKPVDDLLDEMRDAVVHIAIVFDEYGGIAGLITIEDILEELVGELVDEHDASEMEVVDEGNGVFVVPARLPLDELGDLFDLDVTDDEVDTVGGLLAKALGKVPIAGARAVTHGVQIRALDATGRRKQITTLRVRAAEPDPSEPSATDVPGRNGRTHQLPDEGHRP
>NZ_CP046175.1|WP_154794674.1|3403342_3404254_-|GTPase-Era
MTATPEYRAGFVCIVGRPNAGKSTLTNALVGQKVAITSGRPQTTRHTVRGIVHRPDGQLVLVDTPGLHRPRTLLGERLNELVIGTLAEVDVIAFCMPADQEVGPGDRFIARQLAEARTPVVAIATKADKVAPERLAQHLLDISELGEWADIVPVSATKDYQLDVLVQVLLGHLPESPPLYPDGELTDEPDAVMVAELVREAALEGVRDELPHSLAVVVEEIVERDTPHRDGRRMLDVRVELYVERDSQKAIVIGAKGARLRDVGTKARRGIEALLGAAVYLDLHVRVAKDWQRDPKYLHRLGF
>NZ_CP046175.1|WP_154796758.1|3401781_3403176_-|prolyl-oligopeptidase-family-serine-peptidase
MTEVVVPETADVAIGSDAVTDPVGTYETAQETIEVELDGAQVLATITYPVGAPDGRPGMLFMHGAGTATNLNFADQAEALASAGVYAMVPEKRMDTYTTTDRDYVQMAQDYLVSWRILTEWPGVDPAAVGLYGESEGAWIAPVAAAQEPDVAFVVFVSAPVVPPREQFAFAADSYLRSVGVPAALLRAIPRGLGANMPGGGFEYADFDASPYQQQMEQPVLLMYGTADSSMPTVQGPLQLIDDIAQTGNTQYTLRYFEGANHGIRIDDALAPGFNDALARWTLGLPDTATAEPRIAGAQPVQLFRAAPVSHPRWYADGDMLVWSIAGAFALLLIGPVAWVGSRLVRRPSRRLPPPLARYSAATALAATAVLVVFAAYIVQVANLALNYRTDDLAVQGGWVLLQAVGIFAVAVGVRSVSAGINAHRTLGADVTGAVGRITWWGVHVGAGVLLLIAAYWGVFPSVL
>NZ_CP046175.1|WP_154794673.1|3400781_3401651_-|serine/threonine-protein-phosphatase
MRVQAVWGVATDAGGRRKANEDSVLATPSVFLVADGMGGHVHGAMASGAVVAEFSRYADTVRPDVEVQPTDIQAVVRAAQQRIRSSLADVQDSVGDHPVTAGSTAAGVILTRHEDSPYWLVFNVGDSRVYRFAEGALTRISVDHSVVQELVDSGAITDEQARSHPQRNVITRAVGSGIDVEPDFWMLYAGATERLLLCSDGLINELTEDRIAGVLGAGLGPQDAASALLAEAIADGARDNVSVIVIDLMPDHEALATTAPREGVGEPGGAEDTVPREQGAGADRNWWWA
>NZ_CP046175.1|WP_154794682.1|3411795_3412578_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MSAAVFLAPAGELDALTPGARYTLVGPEARHAATVRRLRAGEEIDLVDGLGVRARGTVTDLRGGSDAAVVLDVSAVVREDEPVPAIVLVQALAKGSRDELAIEAGTEVGLDGVIPWQSERSVSQWRGDKAAKGRARWQQIVLAAAKQSRRARVPVVVELVVGAALVRRVEQAVADGGAVLVLHEGATVPVAGAAVGADALEVLLVVGPEGGLSDAEIAALEGAGAQPVRLGPHVLRTSTAGPIAVAVLAQRLGRWDAAAD
>NZ_CP046175.1|WP_154794683.1|3412579_3413704_-|molecular-chaperone-DnaJ
MSDYYEILGVSRDASTEEIKRAYRKLARQHHPDVAGVASEEKFKNITAAHDTLSNPEKRRAYDMGGGMPGMGGAGGAGFGGFSDIFETFFQAAAGGTGQRGPAPRSRRGQDALLRVSIDLSEAAFGVARDLEVETAVVCTTCQGTCCQPGTHPKTCDTCQGRGSVQRVARSFLGQVMTTAACAVCGGYGTIITDPCTECSGEGRVRTRRTVRVNIPAGVDEGTRIKLSGQSEVGPAGGPPGDLYVEIREKPHPVFTRRGDDIHCSTALPMTAAALGTMLNLDTLDGPQEVDIRPGTQPEEVVTLRGLGVGHLNGNGRGDLHVHVDVEVPTKLDEAQEQLLRQLATARGEERPEARLAAANPGMLHRLREKFGGR
>NZ_CP046175.1|WP_154794684.1|3413764_3414793_-|heat-inducible-transcriptional-repressor-HrcA
MSSERQLDVLRAIVQDFVRSREPVGSRNLVERHNLGVSPATIRNDMAALEDSGYIAQPHTSAGRIPTDKGYRLFVDQISVMKPLSAAERRAITELLEGAVDLDDALERTVRLLAQLTQQVAVVQYPSLRRSTLRHVELVPTGQRRLMVVIITDNGRVEQRTVESLTDLDPTFIAELRARLNAAGAGRQAARLPRVLGDLAEVFGPEDRPLVDAVTNAVVEEVSQETEERIVMAGTANLARADLDFTRTIGPVLEALEEQVVLLRLLSEMAEEDGERPLSVRIGHETHHANLAETSVITSGYGGEGPDAIAQIGIVGPTRMDYPTTMASVRAVARYLTRLLSG
>NZ_CP046175.1|WP_168217858.1|3414818_3415802_+|DUF3097-domain-containing-protein
MSATLRQRAVGPRRQHSRATSANSTRRSDNSRRRVRNLTRVSSDRYGRYGQDVLTNDPHAGRTPRTVDTPAEPGLVVEDVETGWVGAVTRVEKSGGTHVVVLEDNRGRTRTFSLGAGFWVDGKPIRLVPYRKPQAPPTAQRTASGSLAVPGARARVARASRIWVEGRHDAELVEKVWGEDLRLEGVVVELLDGVDHLVEMLAEFGPGPGRRVGVLVDHLVRGSKESRIAAEAVRPHGAEHVLVVGHPYVDVWQAVRPARVGLDEWPHIPRGTDIKYGTLAALGWPAQDQADVARGWKRILGTVRDYRDLEPSLLGRVEELVDFVTAP
>NZ_CP046175.1|WP_154794686.1|3416034_3417096_-|hypothetical-protein
MSQLPPDPNNPNGQGGVPPVPPPPGQGQPGPGYGQGQPGPNQGQPGQQPPNYGQGQPGQNPAQPPGGQPPNYGQAPQPPGAYPSPQQGGFPQAPPPGPDQYGQYGAPGAGYGGPPQGQAWGGDPYAQQLQQRPFAVGDAVGYAWKTVTGNLGGWVLLMLILVVGSILLSLLNPTTRVVTEGGFDYSTMTGEFTVLGLISGLLTALLGAFIGAMLFQGALKEITGRKPAVGEFFSVNNFANVAIFALVWAVVTGVIQALLPALGILVAIASFLVAFTYVILIDRGIAWIEGIKGSVQLITQNLGSNLLLALAMIGINILGAIPCLLGWFITVPMTYVAITYAYKTQSGQPVAPK
>NZ_CP046175.1|WP_154794687.1|3417213_3418398_-|coproporphyrinogen-III-oxidase
MSTGPLPGSVVDGSGERDFGVYLHVPFCSVRCGYCDFNTYTATELGGGASQANYATTAIGEIELAASAMREVGLPDRHVATVFLGGGTPTLLPAVDLTRLLDAVGQAWGLAEDAEVTTEANPDSVTAADLAELAGAGFTRVSFGMQSAVPSVLRTLERTHDPRRIPDVVTWARDAGLRVSLDLIYGTPGETLDHWRTSLDTVLALEPDHVSAYALTVEPGTKMGAQVRRGLLPMPDPDDEATKYEIAAAALAGAGYDWYEISNFARTPADRCRHNIAYWRSHDWWGVGPGAHSHIGGHRWWNVKHPRPYAERVDAGQLPVAESETLTLGQREDERVLLGVRLAEGLDVGTDLRGRLPTLVEDGLIEAEPAAAGLALLTLRGRLLADTVVRALTG
>NZ_CP046175.1|WP_154794688.1|3418394_3420308_-|elongation-factor-4
MGAVPSSSSANHQTSRFPAVPPIATPAANARIQPASTPPELLRNFCIIAHIDHGKSTLADRMLQLTGVVDARSMRAQYLDRMDIERERGITIKSQAVRMPWQVGETAFALNMIDTPGHVDFTYEVSRSLAACEGAVLLVDAAQGIEAQTLANLYLAMENDLAIIPVLNKIDLPAAQPEKFAEELATLIGGEPEDCLQVSGKTGVGVETLLDAIVAQVPPPVGDPDAPARAMIFDSVYDTYRGVVTYVRVVDGQLSPRERIRMLSTNATHELLEIGVSSPEPQPTQGLGVGEVGYLITGVKDVRQSRVGDTVTNAAKPATESLGGYRDPQPMVYSGLYPIDGSDYPVLRDALDKLKLNDAALAYEPETSVALGFGFRIGFLGLLHLEIVRERLEREFNLDLISTAPNVIYQVTMEDGTEVTVRNPSEFPTGKVKTVTEPIVKATLLAPSEFVGTIMELAQGRRGTLQGMDYLSEERVELRYILPLGEIIFDFFDQLKSRTRGYASLNYEISGEQDADLVKVDILLQGEQVDAFSAIVHRDKAYAYGVMMTGKLKELIPRQQFEVPIQAAIGARIIARETIRAMRKDVLAKCYGGDISRKRKLLEKQKEGKKRMKNIGRVEVPQEAFVAALSSEPPSGK
>NZ_CP046175.1|WP_154794689.1|3420375_3421041_+|hypothetical-protein
MSSLGDSMGNLAAFTGRLLGGPSKFLIIVATAVLTLALILDVVLLTSPGGPGVAGSVALLALPALLAVPVVVLAVRRRRWLRAVSSLGEHRVVSIEPGARLSTGDALVERVEEDMRGRAGEDDVNAVFDAFSEAAVTGSSKGAGARLTRILGVGRLGIIGRALARVDQAQRALLAAAGGPVAAPYLKDDLRVTLAAALGVFVAIPIASLMAIILALVLLAR
>NZ_CP046175.1|WP_154794690.1|3421127_3421970_-|transglutaminase-family-protein
MSRLHIVHTTHYTYARTVSASYNEARMRPANLPGQTVLEARLTATPSTFSTEYRDYWGATVTAFETLTAHDELVVVSESRVDVSPVLLGGATAGWDTLHAPDLVDRMSEFLAVTTATEPDEELRELARAHADGATPQDAALAVCGALREAVEYVPGVTGVHTRAVEAWQARKGVCQDLAHLAAGTLRSVGIPTRYVSGYLHPRTTSAEIGVAVTGESHAWIEYWCGDWFGYDPTNLITPEGHHVVVGRGREYADVTPIRGVYAGGGASTQQVEVRITQET
>NZ_CP046175.1|WP_154794691.1|3421966_3422899_-|alpha-E-domain-containing-protein
MLSRIAESLFWIGRYVERADDTARILDAHLQHQLEDPWMEEDQACRSLLGVMGAAAPPPGVEVTRQTVLQTLAYDRTSPGAIAGALAAARENARRARETLSSEMWECLNTTRNSLPGQISASTPHDFFAWVRERAAIVAGLVQSSTRRDGTQHFLLLGRALERADMTARLIASRAVSGANGPGWTTMLRSCGAHEAFLRTYRGRDSDTLAAEFLLMDRLFPRSVLFSLEEAETCLTRLEPADPRGHYPGDARMIIGRIRSGIEYQPLLTLLGNLAPEMTRLQQGCSEASDAIRLRYFPSGATDDWIGGRM

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Crispr_ID: NZ_CP046175_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046175_6

4007488-4007576

Orphan

Consensus_repeat	Method
GGCGACCACCCGCCGTCGGGCATCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046175_6

>merge|NZ_CP046175|6|4007488-4007576|CRISPRCasFinder
GGCGACCACCCGCCGTCGGGCATCGCGAACGTGACCCCGGGGCGCCTGGAGCCGCCCCGCCCGGGGCGACCACCCGCCGTCGGGCATCG

>NZ_CP046175|6|6|4007488-4007576|CRISPRCasFinder
GGCGACCACCCGCCGTCGGGCATCG	CGAACGTGACCCCGGGGCGCCTGGAGCCGCCCCGCCCGG
GGCGACCACCCGCCGTCGGGCATCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046175.1\|WP_168217678.1\|4000028_4001846_+\|beta-galactosidase	unknown	unknown	gnl\|CDD\|366567
NZ_CP046175.1\|WP_154795144.1\|4004493_4005477_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176227
NZ_CP046175.1\|WP_154795153.1\|4013374_4014121_-\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|181038
NZ_CP046175.1\|WP_154795138.1\|3993875_3995021_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP046175.1\|WP_154795154.1\|4014117_4016073_-\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236054
NZ_CP046175.1\|WP_154795146.1\|4006325_4007420_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP046175.1\|WP_154795139.1\|3995572_3999418_+\|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit	unknown	unknown	gnl\|CDD\|237030
NZ_CP046175.1\|WP_154795150.1\|4009601_4010924_+\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP046175.1\|WP_154796823.1\|4016074_4016725_-\|succinate-dehydrogenase	unknown	unknown	gnl\|CDD\|239578
NZ_CP046175.1\|WP_154795155.1\|4016873_4017722_-\|gluconolaconase	unknown	unknown	gnl\|CDD\|369882
NZ_CP046175.1\|WP_154795148.1\|4008194_4008800_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|131992
NZ_CP046175.1\|WP_154795151.1\|4010931_4011945_+\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|206747
NZ_CP046175.1\|WP_154795142.1\|4002005_4003529_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271366
NZ_CP046175.1\|WP_154796822.1\|3999501_4000020_+\|lysophospholipase	unknown	unknown	gnl\|CDD\|238873
NZ_CP046175.1\|WP_154795145.1\|4005527_4006274_-\|trehalose-utilization-protein-ThuA	unknown	unknown	gnl\|CDD\|153236
NZ_CP046175.1\|WP_154795141.1\|4001862_4002009_-\|methionine/alanine-import-family-NSS-transporter-small-subunit	unknown	unknown	gnl\|CDD\|293556
NZ_CP046175.1\|WP_154795152.1\|4012241_4013270_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154795143.1\|4003589_4004441_-\|DUF4097-family-beta-strand-repeat-protein	unknown	unknown	gnl\|CDD\|372574
NZ_CP046175.1\|WP_154795147.1\|4007925_4008198_-\|mycothiol-system-anti-sigma-R-factor	unknown	unknown	gnl\|CDD\|274904
NZ_CP046175.1\|WP_154795149.1\|4009026_4009581_+\|DoxX-family-membrane-protein	unknown	unknown	gnl\|CDD\|225168

Protein	Function_ID	Function_description	E-value
NZ_CP046175.1\|WP_168217678.1\|4000028_4001846_+\|beta-galactosidase	gnl\|CDD\|366567	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35.	4.78014e-144
NZ_CP046175.1\|WP_154795144.1\|4004493_4005477_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176227	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.01765e-92
NZ_CP046175.1\|WP_154795153.1\|4013374_4014121_-\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	gnl\|CDD\|181038	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated.	2.10033e-178
NZ_CP046175.1\|WP_154795138.1\|3993875_3995021_+\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.03556e-55
NZ_CP046175.1\|WP_154795154.1\|4014117_4016073_-\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236054	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit.	0
NZ_CP046175.1\|WP_154795146.1\|4006325_4007420_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	3.68635e-77
NZ_CP046175.1\|WP_154795139.1\|3995572_3999418_+\|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0
NZ_CP046175.1\|WP_154795150.1\|4009601_4010924_+\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	2.40722e-154
NZ_CP046175.1\|WP_154796823.1\|4016074_4016725_-\|succinate-dehydrogenase	gnl\|CDD\|239578	cd03498, SQR_TypeB_2_TM, Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. C. glutamicum SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunit. The transmembrane subunit of members of this subfamily is also called Sdh cytochrome b558 subunit based on the Bacillus subtilis protein. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron acceptor (quinone). The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes. Proteins in this subfamily from G. metallireducens and G. sulfurreducens are bifunctional enzymes with SQR and QFR activities.	4.30063e-59
NZ_CP046175.1\|WP_154795155.1\|4016873_4017722_-\|gluconolaconase	gnl\|CDD\|369882	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.	1.47866e-25
NZ_CP046175.1\|WP_154795148.1\|4008194_4008800_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|131992	TIGR02947, putative_RNA_polymerase_sigma_factor, RNA polymerase sigma-70 factor, TIGR02947 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and (with the exception of a paralog in Thermobifida fusca YX) one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria and each gene examined is followed by an anti-sigma factor in an apparent operon.	6.84537e-104
NZ_CP046175.1\|WP_154795151.1\|4010931_4011945_+\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|206747	cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases. YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.	7.70876e-87
NZ_CP046175.1\|WP_154795142.1\|4002005_4003529_-\|sodium-dependent-transporter	gnl\|CDD\|271366	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter.	0
NZ_CP046175.1\|WP_154796822.1\|3999501_4000020_+\|lysophospholipase	gnl\|CDD\|238873	cd01835, SGNH_hydrolase_like_3, SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	2.84611e-50
NZ_CP046175.1\|WP_154795145.1\|4005527_4006274_-\|trehalose-utilization-protein-ThuA	gnl\|CDD\|153236	cd03142, GATase1_ThuA, Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.	1.25985e-125
NZ_CP046175.1\|WP_154795141.1\|4001862_4002009_-\|methionine/alanine-import-family-NSS-transporter-small-subunit	gnl\|CDD\|293556	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit. MaAIMP_sms is a family of hypothetical proteins from Proteobacteria that purported to be small subunits of a methionine and alanine importer.	2.07183e-07
NZ_CP046175.1\|WP_154795143.1\|4003589_4004441_-\|DUF4097-family-beta-strand-repeat-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	0.000151038
NZ_CP046175.1\|WP_154795147.1\|4007925_4008198_-\|mycothiol-system-anti-sigma-R-factor	gnl\|CDD\|274904	TIGR03988, antisig_RsrA, mycothiol system anti-sigma-R factor. Members of this family are the anti-sigma-R factor RsrA, which contains a CXXC motif as a thiol-disulphide redox switch. It interacts with sigma-R. It regulates and is regulated by the mycothiol system, which occurs in many actinomycetes. [Transcription, Transcription factors].	1.11925e-17
NZ_CP046175.1\|WP_154795149.1\|4009026_4009581_+\|DoxX-family-membrane-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	8.65667e-08

>NZ_CP046175.1|WP_154795146.1|4006325_4007420_-|Gfo/Idh/MocA-family-oxidoreductase
MSLSQEPTPLRVGVVGLGFAGSTHLAAYQQIPGVEVVALAGLETQRLHELADSHGVEHRYERWEDLVARDDLDIVSVGTPTYLHEPVTVAALASGAHVLCEKPLARTAEEGKRMVDAAVAAGRVLHIAFNHRRRGDVDVLKHQIDAGALGRIYYAKAHWRRRNGIPGMGSWFTDAEMAGGGPLIDLGVHMLDMALFLLGEPRVLSVSASTFAELGPRGLGGRVDVGKTQVASVYGVEDLATAFLRLEGGATLLLETSWASYRRPGDNFGVELFGSDGGASVDVENYTHSDTLRIYTDVAGVPAEVRPAVTKGEGHLAVVREFVDAVRGGDWSSHVGRDALTRARIIDACYRSALEGREVAVEAD
>NZ_CP046175.1|WP_154795145.1|4005527_4006274_-|trehalose-utilization-protein-ThuA
MPQPTQPIRVTVWGENVHEHRDESVRAIYPDGMHTTIAEGIAEHLGDGVVVRTATLDQPEHGLTEQVLAETDVLTWWGHAAHEAVSDEIVARVRARVLAGMGLLVLHSAHFSKIFIDLMGSTCSLGWRNEADRELVWTVAPGHPITAGVPNPIDIPEQEMYSEYFDIPAPEELVFISSFTGGEVFRSGCTFRRGNGRIFYFSPGDQEYPVYHHPHVRRVLANAVGWAAPGPAIDAPTVANRPRGWFEG
>NZ_CP046175.1|WP_154795144.1|4004493_4005477_-|zinc-binding-dehydrogenase
MRSAHVVRQDPEDPLAGLEVADLPESEAPAGWLRVRVRAAALNHHDLWSLRGVGLSADRLPMILGTDAAGVTDDGREVIVHAVITSPGWTGEETLDPKRTLLSELHPGTLAEYVHVPARNVVDKPADWSFAEAACLPTAYLTAYRMLYGAAGLTPGRRVLIQGAGGGVATAAVVLARLGGVHVTVTSRDEAKLERARALGAHDAVASGTRIAPVDAVLETVGEATWAHSLRSLRPGGVIAVAGATSGPAPSADLNRVFFRSLRVIGTTMGTLAELAAVRDAMVAAGIRPVLDSVHDFTDDDAGSTAVRTAFSRLASGAAFGKVVLTR
>NZ_CP046175.1|WP_154795143.1|4003589_4004441_-|DUF4097-family-beta-strand-repeat-protein
MAATSRIITGPESIEIGGTDGVTEVRVQLIKGAAEVSTRAEPGLHIDIDEVDGAPLEVATDGARLTIGYPSIGWEGWLKRLTSFTADDRARVRIAVGPGIRVTAATVGAAVSVADVAEDLTVNSASGQVRTERTTGSVTVRTASGPIVVGEHTGPANVTTVTGTTFVGGAVPRLSVTTVSGDVAVSPTTPSSVVSVTGVSAAITVTLAPDVGLDLSVHGVSAPVVVDGVDRRGGSGPSSTSFSEPRGAGTSFVKVSTVTGSVSVVHGQPDAPEGDAGQIDGAG
>NZ_CP046175.1|WP_154795142.1|4002005_4003529_-|sodium-dependent-transporter
MAQEREEFKGRRAFIFAAVGSAIGLGNIWRFPYVAYENGGGAFIIPYLVALLTAGIPLLFLDYAIGHKFRASSPLAYRRLGGATEAIGWWHVGICFVIAVYYAVVIAWAVRYTGFSINQAWGDDPGGFFGGDFLQQSGEFTLGGSWVPAVGIPLIIIWLFTLVVHRLGVQDGIARLSQIFIPVLVVIFVVMVIQGLRQPGAMLGLDALFTPDWGALTNPGVWIAAYGQIFFSLSVGFGIMITYASYLKRRSNLTGSGLVVAFSNSGFEILAGIGVFAALGFMAQASGVGVADVAESGIGLAFIAFPAIISTMPGGSLFGVLFFLSLVLAGITSLVSIVQVVLAGVEDKLGWSRTKSVLIAGGLMAVVSVALFPTTTGLNLLDVVDNFANNFGIVGAALVSVIVIGWGLRKLPELAAHVNSVSSFKLGRTWFVLLGVVTPLVLGYMFISEVVTRIRDGYGEMPAGYVAVFGWGVAIGLIVIAVLVSFIPWRRGVVEDEPVLVEGGEPR
>NZ_CP046175.1|WP_154795141.1|4001862_4002009_-|methionine/alanine-import-family-NSS-transporter-small-subunit
MSAAAIVMLVVALVLVWGGLVAALLHLLKHPEEFDVVESGQQEYPPST
>NZ_CP046175.1|WP_168217678.1|4000028_4001846_+|beta-galactosidase
MTDTFTVAGQDFLRDGVAHQIISGAVHYFRVPRALWEDRLRRLLAMGANAVETYVAWNFHAPHAGTGPDFTGNADLGAYIDLAGDLGLDVIVRPGPYICAEWDLGGFPSWLLTDDAAAGALRTSDPAYLAHVDEWFDALIPIIAERQLSRGGPVIAVQAENEYGSYGNDAAYLRAMADGLRARGIDVLLFTSDGPEPLMLAGGTVPGLLATANFGSRQAEAFAELARARPDQPGMCMEFWNGWFDHWGVEHHTRSAESAAAELAGMLADGRSVNFYMAHGGTNFGVWAGANCHDGQAGAGPRFEPTVTSYDYDAPIAEDGTLTPKFEAFRDVIAAHTGRTPPAPPPAPARLAPRTVEVQSCLDLGAVLDGVPRVLAPTPRSFERLGLHHGVVRYVTTVPGPMPAADLHLDGLADLATVVVNSRLVGRLGRTQADPGYGPAGDGLRVELDQPVNTVEITVTSLGRVNFGRHLRDSKGLQAVRLAHQHLFSWTHAGLDLTTLPELDWTARASSAVGVSGGLHRAVLDLTEQDVGDAHLALPGWHHGHVFLNGCNLGRYWNPAGPQRTLYAPAPLWRAGANELVIAELTLPVDAPGGPIEIWDRPDLG
>NZ_CP046175.1|WP_154796822.1|3999501_4000020_+|lysophospholipase
MGWVGRVAARTQSETPLAFFTLAVPGETSTSLSGRWETECNRRFGAGENRLVVAPGSADLQHGVSLARSRLNLANVLDDATNRQIPTFVVGPPPRADVSESALGDLSGAFADVCQRRRVTYVETFEPLRTHEQWLSDTSAGDGTHPQQAGYGLLAWLVLHNGWHEWLGLPQE
>NZ_CP046175.1|WP_154795139.1|3995572_3999418_+|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit
MSQQAPHDPVSVPTNFGGNEWLIDELYAQYREDKSQVDPTWWEFFENYRPADLAANGTAGSNGAPTAKPAPAPAADTKAPAPAPAPEAKATNPPAAATPSAPAHSAAQASAATPPAEEVRADIPPAAPEVTAEAPTAPYTKSLTGGGPRSAGGDDEVEKLRGASARTVTNMVTSLEVPTATSVRSIPAKLLVDNRIVLNNHLQRSRGGKVSFTHLIGFAVVEALGDMPEMNAGYRDLDGKPGIVRPAHVNFGLAIDLAKPDGTRQLLVPSIKEAETMDFAHFWAAYEDMVKKARGGKLEVSDFAGTTISLTNPGTIGTVHSVPRLMAGQGTIIGVGAMNYPAEFQGASTETLAKLGVSKILTLTSTYDHRIIQGAQSGDFLRIVHSKLIGEDGFYDRVFASLRVPYEPVRWTQDTNADAEDDFGKPARIAELIHSYRSRGHFMADTDPLAYRQRRHADLDVQNHGLTLWDLDRTFPTGGFGGKPKMLLRDILGLLRNSYCRTIGSEYMHLHDSAQRKWLQQRLESGWAKPEPIAQQQILRKLNAAEAFETFLQTKYVGQKRFSLEGGESLIPMLDKILERSAEEGLDEVGIGMPHRGRLNVLANIAGKSYAQIFAEFEGNQDPRTVQGSGDVKYHLGTEGKYISVSGESTKVYLAANPSHLEAVDGVLEGIVRAKQDRIDLGGAGFSVLPILIHGDAAFAGQGVVTETLNMSQLRGYRTGGTVHILINNQVGFTTGASSSRSTLYATDVAKGLQIPVFHVNGDDPEAVAHVAELAFDYRQEFHKDVIIDMVCYRRRGHNEGDDPSMTQPVMYSLIEKKRSVRKLYTEALVGRGDMTEDEAEEALSHYKGELERVFTEARTGASTSTDDVQVAGLERPESQLEDAGVMVGWETAAPTQMLTRIGEAHVRPPEGFTVHPKLLQLLQKRHQMSTDGDIDWAFGEILAFGSLLLEGTPVRLTGQDSRRGTFVQRHAVLHDRVNGAEWTPLMYLAADQGKFWVYDSSLSEYAALGFEYGYSVERPDALVLWEAQFGDFVNGAQTIIDEFISSAQQKWDQSSSVVLLLPHGYEGQGPDHSSARKERFLQLAAEDNMIVAEPSTPANHFHLLRRQAYQRPRRPLIVFTPKQLLRLRAATSSVEDFTTGTFQTVIGDSAVDPATVDRVLMCSGRVYYDLLAERTKREDTRTAIVRLEQLYPLDDEAIRAELSRYPNAEFVWVQDEPKNQGAWSYLVLNLVYALPEMSEAARLKGRLRVVSRPNMAAPSAGTGKKHQAEQATLLSEAFQR
>NZ_CP046175.1|WP_154795138.1|3993875_3995021_+|HAMP-domain-containing-protein
MSTPHVRHARSTEVSWWRRTLSLVGDLRPLDPMRSIKMKLIVIIAATVAMYTLVTWAGIRFGFGVLNTFPFALGASLILTQILARGMTRPLREMTAAARSMARGDYTTRVHTNSQDEVGELAAAFNSMAQDLDTLDAQRREMVANVSHELRTPVAALRAQLENMADGVVEPDPDALEGALTQIERLSRLITYLLDLSRLEAGAASLALTEFEVQEFLDDVATQARHAAAGFGRDLRWEVSTLPPDLHLTADEERLRQVISNLLGNASRHSPRGGTVSLRGRYSATTDEVVIEVLDEGQGIPVSDREKVFERFERGNAPAQRGGLSTGGTGLGLAIARWAVSLHGGMIAVADPPGGTGAMLRVTLPARGPAEGRAHPTAPGT
>NZ_CP046175.1|WP_154795147.1|4007925_4008198_-|mycothiol-system-anti-sigma-R-factor
MNQDRPNTGECRCEEALEHLYEYVDSELPDLDLVRLRAHIEECVTCLQAVSAETELRVVLKRSCVEVAPDALRMRVMTQLSLLRTTTTTD
>NZ_CP046175.1|WP_154795148.1|4008194_4008800_-|sigma-70-family-RNA-polymerase-sigma-factor
MTENTDRAPDDENEAARDRRFEDEAMPYLDQLYGAALRMTRNPADAEDLVQETFAKAYAAFHQYKPGTNLKAWLYRILTNTFINTYRKKQREPLQSDADTVEDWQIHRAASHTSTGLRSAETEALDSLGDGEIKDALAELPEDFRLAVYLADVEGFAYKEIAEIMDTPIGTVMSRLHRGRAQLRKLLADHARSLGMKVEKV
>NZ_CP046175.1|WP_154795149.1|4009026_4009581_+|DoxX-family-membrane-protein
MNPLRLLARPLLASVFIVDGLDAIRNADKHAEKLEPYNKPIQAIGEKVPQLPTDAKTLTRITGAVTVGAGVLLATGKAPRLASAVLAAVTVPLTVVRYPFWTSKGDQRRADTSSFLRNFALVGGLLIAAEDRVGKPSLGWQWNNWRAHRSELADVKADLTRANVKALKSGVKATTADLRAKISS
>NZ_CP046175.1|WP_154795150.1|4009601_4010924_+|3-phosphoshikimate-1-carboxyvinyltransferase
MPTLTAPWPAPVATRPLDATVVVPGSKSLTNRTLPLAALAVEPTRITGALVSRDADLMIGALRALGTGIEASDGGTTLVVTPAVLRGPAEVDCGLAGTVMRFIPPIAALADGPVRLDGDAGARVRPMGPVLRGLAALGVPVTGADPATGEKVDDPSFLPLTVHGTGRVLGGEVEIDASGSSQFVSALLLAAPRFEAGLTLHHVGEVLPSQPHIDMTIAALRERGVNVDDAAPGKWRVEPGPISGGDVVIEPDLSNAGPFLAAALAVGGTVRVPNWPTATTQPGALLPGLLERLGATTALADGVLSVTGTGTVRPVDVDLSAAGELAPTIAALAALADGESRLRGIAHIRGHETDRLAALVTEIRRLGGSAEETDDGLIIRGGGLHGADVETYHDHRMATFAAVVGLAVEGVRVVNVATTSKTLPDFTAMWADLLGPSGRA
>NZ_CP046175.1|WP_154795151.1|4010931_4011945_+|ribosome-small-subunit-dependent-GTPase-A
MAGRRDWSESDVRVRPNPKGNRPRTKQRPEHAFARAALVLAVDRGRYHLLTDDGVRLVAMKARELGKSSIVVGDRVDVVGDTSGAKDTLARVVRVHERRTVLRRSADDSDVIERVIVANADQLVIVTALADPEPRPRMVDRCLVAAFDARMDALLCLTKADLADPEPFTQLYRTLDVASVATYREGVTIHGLEALREQLAGKVSVLVGHSGVGKSTLVNALVPDADRATGVVNTTTGRGRHTSSSAVALELPGGGWIIDTPGVRSFGLGHVDPATFVDAFADLATVAQDCPRGCTHTADAPDCALDEWVASGAAGPAGEARLESFRRLLTSRSGDSD
>NZ_CP046175.1|WP_154795152.1|4012241_4013270_+|hypothetical-protein
MPEQPRPPELPRTYLSGELTASLLARMIGTERLVPVRKGAFVVVDPEDPIWRRKRIMTLGRCVAATRLLTRDHVFSHTSAALVHGCALWDVDPRVHLFQSGNPSPGHTRNMFRHVVAIGQAERTIVNGLPVTTLERTILDCARTLHPRDALVVVDSAMGILVKPDRTDRAGTDMRTAELRARLLRRIEEPDMRRGRRQGRVVIALADPYAESPGESALRWIALARGLPPPVCQCAVRTDAAMYYTDMRWRFRLTRPNGTQRIVTVHAEFDGRVKYRGTGPDASRTVTDEKVREDRIRATKAEVVRAVWEDLAHTDRMFARLIDALPSSFVHSLCARPELFRP
>NZ_CP046175.1|WP_154795153.1|4013374_4014121_-|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit
MNITLRVWRQRNSDDTGQMQTYQVTDVSPDMSFLEMLDVLNENLTISGEDPIAFDSDCREGICGMCGLVINGLAHGPKERVTTCQLHMRSFSDGDVIDVEPWRAEPFTVIKDLIVDRGAFDRIIQAGGFITAPTGTAPDAHAAPVPKVDADAAFDAATCIGCGACVAACPNGSASLFVAAKVTHLGLLPQGQPERHSRALDMVAQADLEGFGGCTQIGECTAACPKGIQIDLISRLNRDVLGALAHRG
>NZ_CP046175.1|WP_154795154.1|4014117_4016073_-|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit
MSSVSDTQFFTVGEPLADTKAPAVPVNLMWDERRFQAKLVNPTNRRKRSVIIVGTGLAGGAAAATLGEAGYHVKNFCYQDSPRRAHSIAAQGGINAAKNYRNDGDSVHRLFYDTVKGGDYRSRESNVYRLSQVSVEIIDQCVAQGVPFAREYGGLLDNRSFGGVQVSRTFYARGQTGQQLLLGAYQALERQIGAGSVEMYTRHEMLDLIIVEGRARGIVVRDMVSGEIETHMADVVVLGTGGYGNVFFLSTNAMGCNVTATWRAHRKGAYFGNPCYTQIHPTCIPVSGEYQSKLTLMSESLRNDGRIWVPKEAGDNRDARQIPEDERDYYLERRYPAFGNLVPRDVASRAAKQVCDEGRGVGPGGRGVYLDFAEAITRLGRKAVEAKYGNLFEMYAQITGEDPYVTPMRIYPAVHYTMGGLWVDYDLESTIPGLFVIGEANFSDHGANRLGASALMQGLSDGYFVLPSTIANYLADAPFEAADATHPAAVEVTEAVRERVQRLLAINGTRTVDSFHKELGHIMWEYCGMERTAEGLTKAIGLIRALREEFWTNVRVTGTSEELNQTLERAGRVADFFELGELMCIDALHREESCGGHFRAEHQTPDGEALRDDENFAYVAAWEFGGDGGSPVLHKEDLIYEAIEMKQRSYK
>NZ_CP046175.1|WP_154796823.1|4016074_4016725_-|succinate-dehydrogenase
MAISGIILVLFLLAHMYGNLKVFEGQDAFDGYSHHLRELGEPILPYGGALWIIRIVLLAAIVVHAVSAITLWRRARKATGGKGGARYASSKAPRGAQRSYASFTLRWGGVTILLFVIYHLLHLTTNTIAPGGASDSPFERVVNGFSIWWVVLSYTIALIALAFHLRHGIWAAMATLGANTSPKRRKNLNIIAVVVAAVIVVGFLIPPFAVLFGLVG
>NZ_CP046175.1|WP_154795155.1|4016873_4017722_-|gluconolaconase
MATVRVFHDGTLTDPRLDHPEGIAVHPDGSIWCGGEAGQLYRIAPDGDALEVVASTGGFILGVTFTPAGDALYACDLKARVVHRLDVATRAVEVFSRGGDRPFVTPNAIAVAADGTVYVSDSGAQGVPAPGVYRFAPDGTGGLWYDGELDFANGLALTPSGRELYVAETFASAITRIAIGPDGAPGRPELLAHLPGALPDGVTVGPDGAVYVGCYEPSQVLRVDPAEGTVTTVVADPTAHLLCHPTNLAFRGSRLFTSNLGRWHVSVIDGAVGTGAPSTTPT

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Crispr_ID: NZ_CP046175_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046175_7

4514874-4514975

Orphan

Consensus_repeat	Method
CCGGGCGCCTCGTTCCCCTGACTCGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046175_7

>merge|NZ_CP046175|7|4514874-4514975|CRISPRCasFinder
CCGGGCGCCTCGTTCCCCTGACTCGAAAGGCGGGTCGCGTGCACAACCATCGACAGTTCACGTCAGCGGAACCCCCGGGCGCCACGTTCCCCTGACTCGAAA

>NZ_CP046175|7|7|4514874-4514975|CRISPRCasFinder
CCGGGCGCCTCGTTCCCCTGACTCGAAA	GGCGGGTCGCGTGCACAACCATCGACAGTTCACGTCAGCGGAACCC
CCGGGCGCCACGTTCCCCTGACTCGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046175.1\|WP_154795555.1\|4515830_4517063_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP046175.1\|WP_154795556.1\|4517346_4519119_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|224011
NZ_CP046175.1\|WP_154795549.1\|4511204_4512050_-\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904
NZ_CP046175.1\|WP_168217927.1\|4523012_4523657_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|274656
NZ_CP046175.1\|WP_168217928.1\|4523734_4524931_+\|lipopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240533
NZ_CP046175.1\|WP_154795547.1\|4505685_4508406_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226415
NZ_CP046175.1\|WP_154795554.1\|4515009_4515834_-\|2-phosphosulfolactate-phosphatase	unknown	unknown	gnl\|CDD\|224956
NZ_CP046175.1\|WP_154795546.1\|4504312_4505281_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154795561.1\|4522402_4523020_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|376775
NZ_CP046175.1\|WP_154796874.1\|4508452_4508866_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP046175.1\|WP_168217926.1\|4508931_4510152_-\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|380414
NZ_CP046175.1\|WP_154795557.1\|4519217_4519499_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154795559.1\|4520498_4520882_-\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|239905
NZ_CP046175.1\|WP_154796875.1\|4510160_4511084_-\|phosphodiesterase	unknown	unknown	gnl\|CDD\|277347
NZ_CP046175.1\|WP_154795558.1\|4519650_4520493_-\|DUF3027-domain-containing-protein	unknown	unknown	gnl\|CDD\|378605
NZ_CP046175.1\|WP_154795551.1\|4512865_4513246_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046175.1\|WP_154795552.1\|4513432_4514122_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376278
NZ_CP046175.1\|WP_154795560.1\|4521161_4522406_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|275034
NZ_CP046175.1\|WP_154795550.1\|4512103_4512787_-\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|367619
NZ_CP046175.1\|WP_154795553.1\|4514185_4514785_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP046175.1\|WP_154795555.1\|4515830_4517063_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.82616e-41
NZ_CP046175.1\|WP_154795556.1\|4517346_4519119_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.03247e-179
NZ_CP046175.1\|WP_154795549.1\|4511204_4512050_-\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	1.21915e-102
NZ_CP046175.1\|WP_168217928.1\|4523734_4524931_+\|lipopolysaccharide-biosynthesis-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	3.64308e-18
NZ_CP046175.1\|WP_154795547.1\|4505685_4508406_+\|AAA-family-ATPase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	2.5513e-17
NZ_CP046175.1\|WP_154795554.1\|4515009_4515834_-\|2-phosphosulfolactate-phosphatase	gnl\|CDD\|224956	COG2045, COG2045, Phosphosulfolactate phosphohydrolase and related enzymes [Coenzyme metabolism / General function prediction only].	1.78226e-12
NZ_CP046175.1\|WP_154796874.1\|4508452_4508866_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.2328e-09
NZ_CP046175.1\|WP_168217926.1\|4508931_4510152_-\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|380414	cd07011, cupin_PMI_type_I_N, type I phosphomannose isomerase in eukaryotes and bacteria, N-terminal cupin domain. This subfamily contains type I phosphomannose isomerase (PMI; E.C. 5.3.1.8; also known as mannose-6-phosphate isomerase) found in eukaryotes and some bacteria such as Salmonella enterica. PMI catalyzes the reversible isomerization of fructose-6-phosphate (F6P) and mannose-6-phosphate (M6P), the first committed step in the synthesis of mannosylated glycoproteins. The active site, located within the N-terminal jelly roll-like beta-barrel cupin fold, contains a single essential zinc atom and forms a deep, open cavity large enough to contain M6P or F6P. PMI type I also has a C-terminal beta-barrel fold which has diverged considerably from the N-terminal domain and is not included here. This subfamily contains an alpha helical domain that is found in eukaryotic and some prokaryotic PMIs but is not present in their archaeal counterparts. F6P is a substrate for glycolysis and gluconeogenesis, while M6P is a substrate for production of activated mannose donor guanosine 5'-diphosphate D-mannose, an important precursor of mannosylated biomolecules such as glycoproteins, bacterial exopolysaccharides and fungal cell wall components. PMI is also essential for survival, virulence and possibly pathogenicity of some bacteria and protozoan parasites, as well as for cell wall integrity of certain yeasts. Thus, PMI is a potential target against fungal infections causing serious illness or death.	6.06677e-51
NZ_CP046175.1\|WP_154795559.1\|4520498_4520882_-\|cold-shock-domain-containing-protein	gnl\|CDD\|239905	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.	2.18217e-19
NZ_CP046175.1\|WP_154796875.1\|4510160_4511084_-\|phosphodiesterase	gnl\|CDD\|277347	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	9.2908e-67
NZ_CP046175.1\|WP_154795558.1\|4519650_4520493_-\|DUF3027-domain-containing-protein	gnl\|CDD\|378605	pfam11228, DUF3027, Protein of unknown function (DUF3027). This family of proteins with unknown function appears to be restricted to Actinobacteria.	4.31756e-109
NZ_CP046175.1\|WP_168217927.1\|4523012_4523657_+\|acetyltransferase	gnl\|CDD\|274656	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.	6.72457e-57
NZ_CP046175.1\|WP_154795552.1\|4513432_4514122_-\|hypothetical-protein	gnl\|CDD\|376278	pfam18859, acVLRF1, Actinobacteria/chloroflexi VLRF1 release factor. Archaeo-eukaryotic release factor domain family belonging to the VLRF1 clade, observed primarily in the actinbacteria and chloroflexi bacterial lineages. Contains a conserved glutamine residue in the release factor catalytic loop, suggesting it functions as an active peptidyl-tRNA hydrolase at the ribosome.	3.59288e-40
NZ_CP046175.1\|WP_154795560.1\|4521161_4522406_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|275034	TIGR04181, DegT/DnrJ/EryC1/StrS_aminotransferase, aminotransferase, LLPSF_NHT_00031 family. This clade of aminotransferases is a member of the pfam01041 (DegT/DnrJ/EryC1/StrS) superfamily. The family is named after the instance in Leptospira interrogans serovar Lai, str. 56601, where it is the 31st gene in the 91-gene lipopolysaccharide biosynthesis locus. Members of this family are generally found within a subcluster of seven or more genes including an epimerase/dehydratase, four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD) and a nucleotidyl transferase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analogous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar.	1.91049e-134
NZ_CP046175.1\|WP_154795550.1\|4512103_4512787_-\|DUF305-domain-containing-protein	gnl\|CDD\|367619	pfam03713, DUF305, Domain of unknown function (DUF305). Domain found in small family of bacterial secreted proteins with no known function. Also found in Paramecium bursaria chlorella virus 1. This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important. This domain belongs to the ferritin superfamily. It contains two sequence similar repeats each of which is composed of two alpha helices.	2.19922e-23
NZ_CP046175.1\|WP_154795561.1\|4522402_4523020_+\|sugar-transferase	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	3.53141e-74

>NZ_CP046175.1|WP_154795553.1|4514185_4514785_-|hypothetical-protein
MSETVEQPSDLTAAEPNDPVAFTHVLAFARKVAHELEAARVPQDEWVSQEYRAPRAAEQFGWHELGESVLVPTLERREPIGGWRVTTALVEEHFVTDNKGARLGADASRQVHEFWLLRTGELRDVTLTTDASGATTATRTAVDPRAVGDLVRLPEWTEDTTRVHGRLRVHRYRTDTDAVHADPAPALSDLLTALRRRAH
>NZ_CP046175.1|WP_154795552.1|4513432_4514122_-|hypothetical-protein
MPAQPERRVEVPGARVGRWVAGFGERHGGAEVVLGGGPGATVGDLPGPDGVTLLGADGATAALTAWPGEPPTALADVPGWAHGPTDLVLILVRRGGYAVGRAHGADLLAHKSGTRYVQSRTAAGGWSQQRFARRRGNQADELVTAVVGHVVRILGEHALPAAGAGSAGMVLGGDRALAAQVLEDPRLTVLTDLPRRSFHDVPDPRLRVLSDVLDRARGLQITLREPAVG
>NZ_CP046175.1|WP_154795551.1|4512865_4513246_-|hypothetical-protein
MSAEPATTVRASATFVHALPEQLRERLTHPRWGTELLVDELIEAISLVGTDDAGRPLDEPRWRYEVTAVGVAVNKRGRVTRRPELAVFATGDLPEQYRDLLHGADALYARISSAISDSLDSSRLVD
>NZ_CP046175.1|WP_154795550.1|4512103_4512787_-|DUF305-domain-containing-protein
MTRRLVQCAVAALALGLLVGCTDPSPQTSPSATETAGEQTAASPSAEQSTAEPEPGNQADIDFANAIRAYHAQSSQMHQAILSKAGVPQDVLVLAGTLSNVQGRESEDLQLLLVAWGEEPADPAAAGTLTGMLTPEELQELFVGTGSEASVIYLNAMIAHHEATLALAEEVLTTGTSPELEALAEQIVTAQPEELTDLRELLADADPTGSADGTGDAEGDGGTGANG
>NZ_CP046175.1|WP_154795549.1|4511204_4512050_-|dTDP-4-dehydrorhamnose-reductase
MQILVTGASGMLGTDVVTVLRDAGHDVLPRSRAELDITAGPITPEALAGADLVVNCAAWTAVDAAETAEADAFTANAVGPANLARACAAAGARLVQISTDYVFAGDAAEPYAEDAPIAPRSAYGRTKAAGEWAVRAEAPEHWILRIAWLYGAHGPNFAATMARLAAEKDSLSVVDDQVGQPTWTVDVARLIAALIAADAPTGTYHATSAGQASWFDFARAVVASAGHDPAKVTPTDSASFARPAPRPAWSVLDHTALTAIGVEPIGDWRERWEQAAAVVLS
>NZ_CP046175.1|WP_154796875.1|4510160_4511084_-|phosphodiesterase
MPLRAAEYPHPNHVLVHLSDTHFLPEGELLHGVAPMRDHLEALLADLAATNLRPEALIFTGDLADRGEEEAYRILRGIVAPVAERLGAELIWVMGNHDDRATMRRTLLDAPADGSEADLTEPYDRVVMLGGLRIVVLDSTVPGRHHGEITPAQLEWLAAVLAEPAPEGTVLALHHPPAPCVMDLLVTFELRDQEALAAVLTGTDVRAILAGHYHYSSTSTFAGIPVSVASATCYTQDLQTPDRGTRGRDGAQAFNLVHVYADTILHSVVPMGGGATVGAHVDANVTAERLAAAGMYIRDAQVLHEVR
>NZ_CP046175.1|WP_168217926.1|4508931_4510152_-|mannose-6-phosphate-isomerase,-class-I
MHLLTNPLLRYRWGSGDLLQRLLGVPTDGHPLAEVRIGAHGEESSQLIEGGHAVRLDRFVAAHPAATLGDAATRDGGRRLPFEARLLATRAPLPLQVCPDATQARVGHAREEAAGVDAYAPQRLYPDDSARPGLIHAFSGVRMLAGFRPVPAIHASLAGWDLSILAPIVSALTQAGPGDELLYALTTLLASSATKQRQIAGGLARAAREHPEHPDAGLVTLLAEHHPGDVGVVLALLLNQVRMEPGEVRYLPPGMIHGYLSGMGLELTASSGNVVRAGLSLEHVDLRQVLRIAGLTVGEPPRLEAVPDGVASVFASPAGDLGLWASPGAPGPVPGPAHGPRLVVCLHRWAPEADAGPGGRATVSLTTDTGGMTLSTGQSAFVSAADGPLRVRSSGPVLVAHLPQAR
>NZ_CP046175.1|WP_154796874.1|4508452_4508866_-|GNAT-family-N-acetyltransferase
MVAPDTQIEWRAPVSDDELVELTRSHGGSPEAGWWDRVRAHSLGWVTARSGAGQLVGFVNVAWDGGDHAFLIDTKTRPTHQRQGLGTVVVRRAVEEARAAGCEWLFVDFEPPLAEFYLEACGFRATSAGLIHLTGPV
>NZ_CP046175.1|WP_154795547.1|4505685_4508406_+|AAA-family-ATPase
MTLLGRAAEQETVSRLLASARLGSGGVLTIIGEPGVGKTSLLTEALAGVPPGDVRVLRVTPAEAEGNLPFAALHALVLPALPLLDDIPAPQAAALGTALSLRHGGGPDRFAIGAATLSLLSRYADDGPVVVVLDDVQWADQPSVDAVAFAARRVRNDPIAILIAGRSAEVPEPVRGLPTIELGGLSPEAAAQLLEEAFGSSDRRRDSDGLYRSTGGNPLALLELAGEPNAGDDGGAGLPRTLPDRLQRTFARRLEALTPDERTVAMVAAMAGDDLRLTRAACGRLGVDPAGLDGAAGAGLLAVDGGHVTFRHPLLRAAAYGSARPDLRRRAHLALADELAGVDADRHAWHLAAATTQLDESVAALLAELGRRAGVRTAFTVASTAFERAARLSPDPGDSHDRLIAAAHAAWAGGQRVRALALLDEVEPPSGPATATGTELRATIAVRSGSAREGLGLLERAADLADPDQRVLILAQAWHACMYLADTGAMRRIDARLAAALPFATDPVARAVGLAASGTAGVLLGRDSTVLLRDAVSQLADHVDPLAHPAALPWLLLAPLFLRDADGGGELRTLVDRVRARVGVGALPNLLFHVARDQATTNAWDRAAANYDEAARLARETGQGGELAMSLAGLACLEARSGRATQCREHAADALARCQERSIRFGEIWCELAVGELALSEGRSAEAVQRLGAVAARLDEDEVGDPDLHPGPDLVDALLRTGDAGAAAERAGAFAAAATVNGRPWTLARADRALGLIAAEDDFEAHFASALAHHRHTRDEFETARTHLAYGMRLRRAGRRVDARASLRAALASFDELGARIWAANTRTELEATGEHVPPREAAGPGALTPQELQVCLLLAEGRTTREAAAALFLSPKTIEYHLRKAYTKLAIHSRDELATALRDAG
>NZ_CP046175.1|WP_154795546.1|4504312_4505281_-|hypothetical-protein
MTERFELDRVPPRELLSVQDGVVARWQLLEAGALLHDIERMVRRRELRRVHPGVFVNHTGPLTQRQREWAAVLTAWPAALAGASALPGPAPGNVQIAIARGRAVRLPEGVEVRHVSDLDDRVLWHRAPPRVRIEHATIDEMSKHIRAGAVAAGFATLARVAQSRRTTVDRILIVLASRRRVAGRAMIVSMLSDLRDGVCSVLERGYRDNVERVHGLPTANRQHESSSLGIRTHQDVRYRQFGLVVELDGLAFHGDAAARDDDAARDLAELAASGAPTARVTYGLAFTTPCRTARWIAEILHHRGWAGELKPCPRCTQGPAPR
>NZ_CP046175.1|WP_154795554.1|4515009_4515834_-|2-phosphosulfolactate-phosphatase
MTPDAGHTQAGARVRFEWGRAGAALIRPGEIAVVVDVLSFSTAVSVAADRGITVLPYPWARADAAEYALRHDAELAVHRDEAGPGRITLAPGSLRSAEGVRRVVLPSPNGATISFSLQSAGAQVLAGCLRNATAVGRWAASRGVGILVVAAGERWPDDTLRPAVEDLWGAGAVIDAVAEELPDGGGAAASAGAPGVCSPEARVARAAFLEARAAADGAGWPALLADLASGRELIAAGHAEDVRIAAEVGGSDVVPLLAGALAEGHGFVPADPFR
>NZ_CP046175.1|WP_154795555.1|4515830_4517063_-|MFS-transporter
MTPTPEHTTSLRTMIPGVYLPSLLFEIGVGAMLPLIAVTAIGLGADLATAALVAALLPIGQILADVPAGMLAARFGDRKAMIGSSIVAMAGMATLALAPNLIVIGAGVLLVGATNSVYTLARQSYLTEVIHPLRRARALSTLGGVARIGLFIGPFAGAALIHGGADTANAYWLGVGTSLAAAIVVIVAPEVAHERTVAARDAAPRRPMRAVLREYLPVFRTLGVAVLLIGAVRGARQTVLPLWTEHLGFEPSATALVFGISGAIDMLLFYPAGKVMDRYGRLWVAIPSMLVMGAAMIALTFTDGLVSVSIVAMIMGFGNGIGSGILMTLGADTAPPGERAQYLGIWRLFSDSGSASGPLVVSAGTALGSLAAGIGTMGALGAVAALALWRWVPRWSVHANRTTRRRAGIL
>NZ_CP046175.1|WP_154795556.1|4517346_4519119_+|polysaccharide-biosynthesis-protein
MNSVWGRRALRAVWDCFSWATAVLLVVGARYDFTLPDDLWASVGWYVAAACVLQVGVGTALMLYRGRYRTASFDESIGMAVTAVTVGALLAISFVVLLGSSFPRAVAVLTPPIALLFMAAGRWMYRASTSWQKNARVRNKRVLIYGAGDAGHQLIRLIATDDATQYRVVGFIDDDKAKRNLRLLGVPVLGRREHLLDVAAKAGARTVIFAVTNADAATIREVSDLVLGGGLKFLVLPPLTDLIGGRVRLSDVREVEVSDILGRRQIKTDIDSIAGYLTGRRVLITGAGGSIGSELARQVHRFGPSELTMLDRDESALHGVQLSIYGQGLLDTPDVVLCDIRDEDALRKVFAARRPEVILHTAALKHLPMLEQYPEEAWKTNVLGTLNVLRLADECSVRQFVNISTDKAADPSSVLGHTKRIAEQLTAWQAARADGTYLSVRFGNVLGSRGSMLHTFSAQIAKGGPVTVTHPEITRYFMTIPEACELTIQAAAIGRGGEVLVLDMGEPVSILDVAKRMIANSGKRIDIAFTGLRDGEKMHEVLIGREEADARPFHPLITHVPVPPVAPEDLPTAHSPGAPEAVEHRRPLVT
>NZ_CP046175.1|WP_154795557.1|4519217_4519499_-|hypothetical-protein
MKKTFRLRFRVAVVAAATALGLVAVGPAAIAATQSDDAVATGWGDELIRNGWGDELIRAGWGDELIRNGWGDELIRAGWGDELIRNGWGDELI
>NZ_CP046175.1|WP_154795558.1|4519650_4520493_-|DUF3027-domain-containing-protein
MTETFTVPSTTTSARRPAKDAVLAAAVDQAREALLEGGAKDVGDHLGMVLEADRLATHYFAATSPGYEGWRWYVTVSRISRSRTATVCESGLLPGDGALLAPAWLPWADRLAPGDLGPTDRLPYVAEDERLEPGYLATGDPEEDRIAIAELGLGRDRVMNRKAIDAAASRWYAGSQGPDTAGTKAAGANCAECGFIVRIAGSLGTVFGVCANEWSPDDGKVVALDHGCGAHSETDVPPQGHEWQQSSPHLDETDIEVVAVGPTAASGPDAESSPEEEPIA
>NZ_CP046175.1|WP_154795559.1|4520498_4520882_-|cold-shock-domain-containing-protein
MPTGKVKFFDADRGFGFIASDDGGEVFLHASAMPPDTPAPKPGTRLEFGVADGRRGLQALSVRVLDAGPSVARAHRRPAEDMGPIVEDLIKLLDRAGNKLRAGRYPDKAEATKVAQMLRVVADEFDA
>NZ_CP046175.1|WP_154795560.1|4521161_4522406_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MHATADARDAETPAPERDASRSLRPGSSDVSARIHLSSPDIGAEEEEAVLSALRSGWIAPVGPHVDKFESDLAALTERRHAVALSSGTAALHLGLLTLDVEEGDSVITSTLTFAATANAIVYTRARPVFVDADSTGNMNPALLRLAVEDQEYRGRRVAAILPVDLFGKMADHESIGNIANEFAIPVLTDAAESLGASRDGQPAGSTGTAAAVSFNGNKIITTSGGGALLTDDLGIAQRARYLATQARQPTRHYEHVDIGYNYRLSNLLAALGSSQLLRLPEMIDRRRAHRLMYRKMFSEVPGVSVFGGLDGSEGSGSTRDNFWLTSIIVDAEVAGWSADQLITHLERANIEARPIWKPMHLQPIFASSDCYVDGTSDSFFECGLSLPSGSSLGPADTQRIRAAIMEFLEGGPGK
>NZ_CP046175.1|WP_154795561.1|4522402_4523020_+|sugar-transferase
MRTGLYAPIKRFGDIILSALALVLTAPIQLVVACLLVTTQGRPVLFRQLRPGLAEQEFTIVKFRTMRDPVYEKEPDALRITRTGRFLRETSLDELPTFYNVLAGHMSIVGPRPLLPEYLPLYTEDQRRRHEVRPGITGIAQLAGRNSVPWARRLELDVEYVERMSVLLDASIAVRTLHLVIRRRGVAEPGHATSSRFDEGPRTHA
>NZ_CP046175.1|WP_168217927.1|4523012_4523657_+|acetyltransferase
MPDGTVVFGASGFGREAIDVILDIRTADPMALPPLLGVMDDRPTQEGLEKLAVLGVRYLGPIARWSEYQGTANYVVGIGDPRTRYDVVSRTDPSSESAATIVHPSATVGHATRLGRGVIVCAGVQISNNVTLGDHVHMNPNSTVGHDARVLDFVSINPGAVISGDCLISDRVLIGANATVLQGLAVGAEAIVGAAACVVRDVAAGRTVKGVPAA
>NZ_CP046175.1|WP_168217928.1|4523734_4524931_+|lipopolysaccharide-biosynthesis-protein
MSTAHAIGLVTISRFGTLGVSLIGGVLLARSLDVPARGVLSVSITLVSLLASVGAAGLETAALRSAGGSDGATVLYTSIRRTAVVAGVCVPVALVLLAFQVPFAGLQPLEVAIAVATIPLVVLSQLLSNCLLGMRRYHIWTISTVGTVTAYVVGIAGLTIAGVTSLGPYLTAFTLGYVFSAIVLLGSLRGRAHRQSRDAAARLATSARRMTAITLLQMLFLRIHAPLVQALGSSGAAGLLAVATPLVDALLFLPVAAGLVLLPRYSAQNSAPARPLRDALRVSLITAFGALALGLIAPIVVPFLYGADYAEASTLVQLMLPGAIAFAFARVLQSHLLAVESYGTLVLGSLLAVILSVVAQLILSPHLGAPGAAIAIAVGYITMTVTFCVGYARRPQHA

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Crispr_ID: NZ_CP046175_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046175_8

5250669-5250830

Orphan

Consensus_repeat	Method
CGGCGGCTGCTGGCCGTA	CRT

3 spacers

The CRISPR arrays of NZ_CP046175_8

>merge|NZ_CP046175|8|5250669-5250830|CRT
CGGCTGTTGCTGGCCGTAGGACTGCTCGTGGGCGGCTGCGGCCGGTGCCTGCGGCGGCTGCTGGCCGTACGACGGGTCGTGGGCCCCTCCGGCCGCCGACTGCTGGCCGTAGGACTGCTCCTGGGCCCCTCCGGCCGGCGCCTGCGGCGGCTGCTGGCCGCC

>NZ_CP046175|8|1|5250669-5250830|CRT
CGGCTGTTGCTGGCCGTA	GGACTGCTCGTGGGCGGCTGCGGCCGGTGCCTG
CGGCGGCTGCTGGCCGTA	CGACGGGTCGTGGGCCCCTCCGGC
CGCCGACTGCTGGCCGTA	GGACTGCTCCTGGGCCCCTCCGGCCGGCGCCTG
CGGCGGCTGCTGGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046175.1\|WP_154796130.1\|5251420_5252428_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|237665
NZ_CP046175.1\|WP_154796124.1\|5244915_5245908_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224094
NZ_CP046175.1\|WP_154796126.1\|5247018_5248683_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173874
NZ_CP046175.1\|WP_154796125.1\|5245904_5246885_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223674
NZ_CP046175.1\|WP_154796134.1\|5259918_5261349_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP046175.1\|WP_154796123.1\|5243218_5244919_-\|dipeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP046175.1\|WP_154796936.1\|5256520_5257267_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|366444
NZ_CP046175.1\|WP_154796131.1\|5253082_5254948_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP046175.1\|WP_154796121.1\|5240343_5241930_-\|DUF3131-domain-containing-protein	unknown	unknown	gnl\|CDD\|370812
NZ_CP046175.1\|WP_154796129.1\|5250997_5251414_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133394
NZ_CP046175.1\|WP_154796935.1\|5252453_5253056_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|271355
NZ_CP046175.1\|WP_154796135.1\|5261500_5261851_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|379266
NZ_CP046175.1\|WP_154796127.1\|5248936_5250046_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224525
NZ_CP046175.1\|WP_154796120.1\|5239220_5240231_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|181818
NZ_CP046175.1\|WP_154796119.1\|5238379_5239144_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|376808
NZ_CP046175.1\|WP_154796937.1\|5257348_5258620_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP046175.1\|WP_154796133.1\|5258616_5259237_+\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP046175.1\|WP_154796132.1\|5255567_5256503_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP046175.1\|WP_154796118.1\|5237708_5238233_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227140
NZ_CP046175.1\|WP_154796122.1\|5241974_5243183_-\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|225343

Protein	Function_ID	Function_description	E-value
NZ_CP046175.1\|WP_154796130.1\|5251420_5252428_-\|DnaJ-domain-containing-protein	gnl\|CDD\|237665	PRK14295, PRK14295, molecular chaperone DnaJ.	5.31296e-84
NZ_CP046175.1\|WP_154796124.1\|5244915_5245908_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.30276e-76
NZ_CP046175.1\|WP_154796126.1\|5247018_5248683_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173874	cd08509, PBP2_TmCBP_oligosaccharides_like, The substrate binding domain of a cellulose-binding protein from Thermotoga maritima contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of a cellulose-binding protein from the hyperthermophilic bacterium Thermotoga maritima (TmCBP) and its closest related proteins. TmCBP binds a variety of lengths of beta-1,4-linked glucose oligomers, ranging from two sugar rings (cellobiose) to five (cellopentose). TmCBP is structurally homologous to domains I and III of the ATP-binding cassette (ABC)-type oligopeptide-binding proteins and thus belongs to the type 2 periplasmic binding fold protein (PBP2) superfamily. The type 2 periplasmic binding proteins are soluble ligand-binding components of ABC or tripartite ATP-independent transporters and chemotaxis systems. Members of the PBP2 superfamily function in uptake of a variety of metabolites in bacteria such as amino acids, carbohydrate, ions, and polyamines. Ligands are then transported across the cytoplasmic membrane energized by ATP hydrolysis or electrochemical ion gradient. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	8.6235e-135
NZ_CP046175.1\|WP_154796125.1\|5245904_5246885_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.65558e-102
NZ_CP046175.1\|WP_154796134.1\|5259918_5261349_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	3.71855e-11
NZ_CP046175.1\|WP_154796123.1\|5243218_5244919_-\|dipeptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NZ_CP046175.1\|WP_154796936.1\|5256520_5257267_+\|ABC-transporter-permease	gnl\|CDD\|366444	pfam01061, ABC2_membrane, ABC-2 type transporter.	2.12908e-11
NZ_CP046175.1\|WP_154796131.1\|5253082_5254948_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP046175.1\|WP_154796121.1\|5240343_5241930_-\|DUF3131-domain-containing-protein	gnl\|CDD\|370812	pfam10091, Glycoamylase, Putative glucoamylase. The structure of UniProt:Q5LIB7 has an alpha/alpha toroid fold and is similar structurally to a number of glucoamylases. Most of these structural homologs are glucoamylases, involved in breaking down complex sugars (e.g. starch). The biologically relevant state is likely to be monomeric. The putative active site is located at the centre of the toroid with a well defined large cavity.	1.38247e-09
NZ_CP046175.1\|WP_154796129.1\|5250997_5251414_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133394	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	2.47799e-37
NZ_CP046175.1\|WP_154796935.1\|5252453_5253056_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|271355	cd00446, GrpE, nucleotide exchange factor GrpE. GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. In bacteria, the DnaK-DnaJ-GrpE (KJE) chaperone system functions at the fulcrum of protein homeostasis. GrpE participates actively in response to heat shock by preventing aggregation of stress-denatured proteins; unfolded proteins initially bind to DnaJ, the J-domain ATPase-activating protein (Hsp40 family), whereupon DnaK hydrolyzes its bound ATP, resulting in a stable complex. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Over-expression of Hsp70 molecular chaperones is important in suppressing toxicity of aberrantly folded proteins that occur in Alzheimer's disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis, as well as several polyQ-diseases such as Huntington's disease and ataxias.	1.01883e-32
NZ_CP046175.1\|WP_154796135.1\|5261500_5261851_+\|DoxX-family-protein	gnl\|CDD\|379266	pfam13564, DoxX_2, DoxX-like family. This family of uncharacterized proteins are related to DoxX pfam07681.	7.21678e-08
NZ_CP046175.1\|WP_154796127.1\|5248936_5250046_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.88899e-89
NZ_CP046175.1\|WP_154796120.1\|5239220_5240231_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|181818	PRK09393, ftrA, transcriptional activator FtrA; Provisional.	5.22714e-110
NZ_CP046175.1\|WP_154796119.1\|5238379_5239144_-\|flavodoxin-family-protein	gnl\|CDD\|376808	pfam02525, Flavodoxin_2, Flavodoxin-like fold. This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) EC:1.6.99.2. These enzymes catalyze the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species. This enzyme uses a FAD co-factor. The equation for this reaction is:- NAD(P)H + acceptor <=> NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy. The family also includes acyl carrier protein phosphodiesterase EC:3.1.4.14. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP. This family is related to pfam03358 and pfam00258.	9.09391e-55
NZ_CP046175.1\|WP_154796937.1\|5257348_5258620_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	8.68403e-58
NZ_CP046175.1\|WP_154796133.1\|5258616_5259237_+\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.06715e-71
NZ_CP046175.1\|WP_154796132.1\|5255567_5256503_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.80497e-94
NZ_CP046175.1\|WP_154796118.1\|5237708_5238233_-\|hypothetical-protein	gnl\|CDD\|227140	COG4803, COG4803, Predicted membrane protein [Function unknown].	0.000129448
NZ_CP046175.1\|WP_154796122.1\|5241974_5243183_-\|family-1-glycosylhydrolase	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	5.51871e-84

>NZ_CP046175.1|WP_154796127.1|5248936_5250046_-|substrate-binding-domain-containing-protein
MVEKTPTVYDVAEMAGVSIATVSRYFRNPAAVRETTRERVREVVRELGYVPSGSARGLAARRTGTIGVCFPSFDDVARIDARRLESGPPVQVRVDADAHVDTGSDLYIAEVVRGTEIEAWRHGFAVMIAVPRGAAAHNVVEGLAGRVDGLVTLARAIDADQLGHIARRLPVVVVAGPREGDVYDHVTANNHGGMVALTDHLIADHRLTRLEFVGGPEDSPDAQTRFEGFTEAMLLAGLGVPERPISRSDFTRAGGRETGRRLLAEGLLEDLDGLVCANDQSALGVLDELTAAGLRVPQDLVVTGFDGIEASNVSTPRLTTVRQPMVELGRLAVAQVLHRLNEPMAEPTTRVLPVEVLLRDSCGPHRRPA
>NZ_CP046175.1|WP_154796126.1|5247018_5248683_-|ABC-transporter-substrate-binding-protein
MQRRRRSRWPLFGSALGVAVLLATSACTVDVPTEDDNNDGGGADGTSMLLAADNGSPTFERNFNPYSPGKRTTTTLIYEPLFVTNTLDGTETPFLASEKEQPDPATVIFTIREDVTWSDGEEFTPDDVVFTFDLLKEFPALDTNGVWALIESIEVDGQDVVIHLTGDNVPAAAIIQKTIIVPEHLWADVEDPTTYTNEDPVGTGPYALGEFTPNEYTLERNEDYWQVENVAAQELILPASNTQLDVVNNGYDWAYAFMSDVENTWVAAAEGNTYWFPPGGTIALFPNLTMAPFDNPEFRLGLSAALDRDRIAEVAEEGYVDAAGMSGLLLPNQEAFLNPDLPDGGAVAQDVDAALAHFEAAGYTMSGDQLVDSAGTPLALTLTTPNGWTDWLRGATEVQTQLAAVGIEVTLNQPQPAAYQQELQNGNFQLSMGSFGGTGSIYEDYNRLLSSEFLQPVGTTTTANFQRYSDPDTDALLAELRVTLDEARQLEIAHELQTIMFEQAPVISMFYGGLWGLFSEANFTGWPSAEDPYASPATWDANPLLVLTNIEAAG
>NZ_CP046175.1|WP_154796125.1|5245904_5246885_-|ABC-transporter-permease-subunit
MRYVLRKIGLLLLTLWAAVTLNFFLPRMMPGSPTDAAIAKLAQNGPVSPATRAAIEAQLGVPTGNIGDQYVTYLGNVLTLDFGVSYTFFPQSVSELVLTALPWTLVMVGVVTIVAFVLGTLLGVLAAWKRGTFLDSLPTLTGTFTSAFPYFWTALLLLFFLGYVLQWFPTSGAYSARATPNLSLEFIADAAYHAVLPAVTILITSLGGWILGMRNTMINTLGDDYVTFAEANGLAPRAVALKYAARNAILPNLTGFGLALGGVVGGSLLVERVFNYPGVGYLLYNAVTNQDFPLMQALFLMITVSVLVANFIVDVLYGYLDPRTRR
>NZ_CP046175.1|WP_154796124.1|5244915_5245908_-|ABC-transporter-permease-subunit
MTEKEATARDEAPQPTRPSPSGRQNPNDTVDGAGAAVQVAAPASPLTVLGRAAGTIWSVPKARVGLILLAVFLLAAVFAPLLAPYAPTDNTFGRAEGGSAAHPLGTTTAGEDVLSQLIYGSRVSVLVGFVAGFGATLIAVLLGMSWGYTRGFAADVINFFVNLFLVIPGLPLMIVLAAYLQGGGLAMIIFVVVITGWAWGARVLRSQTQSLRSRDFITAAQFSGESSFRIVFREILPNMTSLITGSFFGAATAAILAESGLSFLGLGNTAMVSWGSMLFWAQNSNAILTGQWVLLFAPGLCIALLATSLTLINFGVDGLSNPRLREGKGR
>NZ_CP046175.1|WP_154796123.1|5243218_5244919_-|dipeptide-ABC-transporter-ATP-binding-protein
MTLLDVQDLSIVYEPRGAEPVTAVRGATFTLEQGEFIGLVGESGSGKSTLGFALTGLAKAPARITSGRITFDGTDIAHLGGEDLRRQRRGGFAMVLQSGMNALNPVRTIGNHFADIFAAHEHVPRGRRRERAVELVEKVKLPASVLDRYPGELSGGMRQRVAIALAMSLDPRLLVFDEPTTALDVLVQRAVMETIIELQREENFTAILVSHDLGVVLESTARVLVMHEGVIVEDGPSARILRDPQDDYTKMLLSHYADPRAEVVELPGLRVAGSQISTTGEPPAAIGTDAAPSGGAKARTGRTREAVVLEGVGKVYPPPRRGEDPVVAVDDVSFTIEPGDALALVGASGSGKSTIAKLITGVERPTSGTVRLGETDVGSLRRGGLRRLRRDVQMVFQDPYSALNPLHSVEYTLMRPVVNFGGLRGLEARRRVLELLDIVGLAPVEQFAAKLPHQLSGGQRQRVVIARALACDPQVIIADEPVSMLDVSLRAGVLALIEGLREQWGVSLLFITHDLLSARLVTDKILVLNRGRVVERGETAQVLRFPEDAYTVELLDAVPQPGRAAD
>NZ_CP046175.1|WP_154796122.1|5241974_5243183_-|family-1-glycosylhydrolase
MTAAETTQPLVFPDGFRWGAATAAHQIEGNNLNNDWWPREHAPGTSIAEPSGDACDSYHRYGEDITLLAELGLDTYRFSIEWSRIEPEEGFVSRAEIAHYQRMVEACQAAGLTPMVSLMHFTVPRWFADDGGWRSAKAVDRFRRFTELALPIVADGVPWVCTINEPNIAAMIAGGEDPANLVAYGLPAPDLAVADTLLACHRAAREVLAEHTSVASGWTVATQAFQPEPGCEDVAREYGHQRDDWYLEAVRGDDWVGVQAYTRTIIGPDGPRQVPDGVETTLTGWEYYPPALEIGVRSAWELTGGVPVFVTENGIATADDTRRIDYTAGALAGLHAAIADGVDVWGYLHWSALDNYEWASGFRPTFGLIGVDRQTFARTPKPSAAWLGEVARTNTLSTPAPQ
>NZ_CP046175.1|WP_154796121.1|5240343_5241930_-|DUF3131-domain-containing-protein
MRKRLLAAVTGVVLVATPAAVATAAPQPTGPTGPAPSGINADLTRADRQELRRWAADTWASFEAMTDETTGLPADNIEGDLDPATRSGYTSPTNIGAYLWSTVAARDIGLISRTEARHRMAQTLDTLAGMERHEPSGMFYNWYDEATGAKLVEFPGSGEVIHPFVSTVDNGWFAAALMVVRSAEPRLRAQAQDLLDGMNFAFFHNPDARGGDLPGWNRGGFWVDEPPAEQCNVPGNYGDPAGAPLYYTCHHYDLLNSETRIAVYVGIALGQIPQEAYYSLWRTFPDTCDWDWAEQQPIGTTRSYLGIDVYEGTFAYEDLHMVPTWGGSMFEELMPDLFVPEQRWAPDSWGANHPLAVQAHIRHGLDEADYGYWGFSPASNPFGGYNAYGVDVIGMQSDGYFSDIEGTDVDGGFGDCREGANPEPEFGDGVVTPHAAFLAIPYAPREAVDNLAGIEDELGAYGPGGFFDSVAVSGTAAERYLSLDQGMILGALGNVLGHDALHRYFARGEVAQVIRPLIGMEEFSSGVF
>NZ_CP046175.1|WP_154796120.1|5239220_5240231_+|helix-turn-helix-domain-containing-protein
MRKNRAMPTRARHRVAVLVRDGVLPMELGLVHQVFAEAKTSDGGPLYEVRTAAPVPGQVRTDADFPITVAHGPAALAWADTVIVPASHSPAETDSTGRLGPELAAALARIRPGTRIASICTGSFVLAAAGLLDGRKATTHWKSAAQFRAWFPAVDLDPNVLYVDSGDVLTSAGEASGLDLCLHLVRRDHGVAVANTAARHLVVPPHRDGGQAQFIERPVPVGPRSVTSGARDWAVANLDRPLPLAELAERSAVSVRTLTRAFRAEFGLSPGQWVTRQRLERARHLLEHSDLPVDRIAGAAGFGTATSLRAHLQASLGVSPSAYRRTFRGSEPALPA
>NZ_CP046175.1|WP_154796119.1|5238379_5239144_-|flavodoxin-family-protein
MNVLWVLAHPEQRSLAGALHADGVATLRAAGHAVEVDDLYAMKWKAVLDAEDYPEVEPGSVLEASGEAYARGRLSPDILAEHEKIARADTIVLQFPLWWFGMPAILKGWFDRVFVRGYAYDMPDPDRPGHTMRYGRGHLAGKRALVVVTTGAGTEAFGPRGIHGDLDEVLFPLLHGTLWYAGISALPPVAIHGTSAYGESDHAAAVELLRTRLGELGATEPIPYRFQGPEDYDRDLALHPGLAPGRTGLGVHRR
>NZ_CP046175.1|WP_154796118.1|5237708_5238233_-|hypothetical-protein
MPVDTFFVYVGVYDSVADAESDYSAVKALHTEVGLIDAYDAAVIERTASGKVKIAKKHETPTRVGGVLGAGVGLATGLVVALFPFAAIGGGLLAATAGGGAVLGAVAGHAAAGMSRSDLKELGEGLDASQAGLVVVAVSDLEGKVEHALKKAQRVEKKELKAEQSAIEKDAQGH
>NZ_CP046175.1|WP_154796129.1|5250997_5251414_-|MerR-family-transcriptional-regulator
MAATYDAPVLAISIAAEAAGMHPQTLRQYDRLGLVVPRRTSGRGRRYSQRDVDVLREVQRLSQEEGINLAGIKRILELAAENERLEGEVARLNQLLGGGRRVFHASPGGDVVAVPLGTRLRRVRSSAGALVVWQPPRR
>NZ_CP046175.1|WP_154796130.1|5251420_5252428_-|DnaJ-domain-containing-protein
MTGQDWLEKDFYKMLGVSKDADAAEVKKAYRKLARTWHPDQNPGDAKAEAKFKEIGEAYGVLSDAEQRKQYDALRAMAGGGPRFASGAGGANTGGFEDLFGGMFNQGAPGGGTRVRYSTDGGGMPGGGFEDILGGLFGGGMPGGAGAGFRAPQKGGDITTSASLPFRTAVQGATVSLTIDGGRSMNVRIPAGVTDGQKIRLAGKGQASINGGSPGDLVVTVRVEPHPVFGINGRNLTITVPITFPEAVNGATITVPTLDGSSVKLKVPAGTQSGARLRAKGKGVATKNGTGDLIVTLEVAVPRNLNKDARAALEQFAAASDGTDPRAGLAAAARS
>NZ_CP046175.1|WP_154796935.1|5252453_5253056_-|nucleotide-exchange-factor-GrpE
MRDKRRLDPNTGEVRSEAGAAVEPDGGAAQADASPAEPVADGDTAPSGDDELAKAKAEALDLADQVARGKADLYNLDQRFNNFVKRSRAEAEVEKTRGTHSVIEALIPVLDDIAAARQHQALEGPFASIADKLESTLTTRFALERFGAEGEEFDPNVHEALMHNQSPDVTVDTITTVLQPGYRAGDVVIRPARVGVTGPE
>NZ_CP046175.1|WP_154796131.1|5253082_5254948_-|molecular-chaperone-DnaK
MARSVGIDLGTTNSVVAVLEGGEPTVIANAEGARTTPSVVAFSKTGEVLVGEVAKRQAVTNVDRTVASVKRHMGTDWSVSIDDKQYTAQEISARVLGKLKKDAEAYLGEPVTDAVITVPAYFNDAERQATKDAGQIAGLNVQRIINEPTAAALAYGLEKGKEDELILVFDLGGGTFDVSLLEVGKDDDGFSTIQVRATNGDNRLGGDDWDQRIVDWLVTQVKNSSGVDLAKDKIAVQRLREAAEQAKKELSSATSTNISLQYLSMSENGPIHLDEKLTRAQFQQMTSDLLDRTKEPFHNVIKDAGISLSEIDHVVLVGGSTRMPAVTEVVKELTGGKEPNKGVNPDEVVAVGAALQAGVLQGERTDVLLIDVTPLSLGIETKGGVMTNMIERNTAIPTKGSAVFSTAEDNQPSVLIQVFQGERDFVKDNKPLGTFELTGIAPAPRGVPQIEVTFDIDANGIVHVSAKDRGTNAEQSMTITGGSALPKEEIDRMIKEAEAHAAEDAARREEAETRNTAEQLAYSTEKLLTDNAEKLPEDVATEVRAAVDKLKAALAGEDIEAVKTAQTELAAVSQKIGEALYAQPDAAPAPGEGAPAAEEAAPAADEDDIVDAEIVDEDEKK
>NZ_CP046175.1|WP_154796132.1|5255567_5256503_+|ATP-binding-cassette-domain-containing-protein
MTALEVRNLHKRYGQHVALDDVSFTVEEGEIFGIIGPNGAGKTTTVESIAGLRTPDSGSISVLGLDPIKDRAELRERLGVQLQESSFPDAIKVAEALELYSSFYRDPTDWRELMGLLGLTEKRNTQYTALSGGQKQRLSIALALVGNPKVAILDELTTGLDPQARRDTWSLIERVRDTGVTILLVTHFMDEAERLSDRVAVIAGGRVAAVDTPAGLIARASAGQQVRFRVSQPLDKSVLTVLPDVTDVEIAQGRWIVTGNGQLLSSVAGALARAQVVVEDLRVDQRNLDDAFVAFTGLAPESPEPSERKAD
>NZ_CP046175.1|WP_154796936.1|5256520_5257267_+|ABC-transporter-permease
MVKVETKLFLRDSATVMFGVLFPTGLLLGLGAIPALREPSPETGGLRAIDVWAPTALVFGMVMIAVQHVPAVIATYRERGILRRLSTTPAHPRSVLLAQIIVAFASVVVSAALMILLAWAVLDIAPPERPLEFVVAFIVGYAALLGIGMISAAVVRTSSAANQIGTFLFVALMFFGGAFLPRVLMPDLLREVGEFIPPGLQALTTAWSAEAGEVTATAGGQPFWLQIAIMAGIAVIASAIAAKLFRWE
>NZ_CP046175.1|WP_154796937.1|5257348_5258620_+|sensor-histidine-kinase
MANRSRLAWKKEQLRVWDLLQLFTPWLLLTISTATYFSRVLPASGERFWPGGASALGLVAASGLWVLFGQTLPIRRRTLRPVPAGIYFVGLLALCVTLMTYSDVFLVFTIAGFFQAYLLRPWPLGVLAVLATSVALNGSVMRVWADPSPEVLAEFLLIVAVQTTAIGVGILLTARSEPEERKREELVERLEEALHENAGLHAQLVAQARESGAQDERQRLAGEIHDTLAQGLAGIITQLQAAQRSASVQNETEEHVARALRLARSSLTEARRSVQALAPQELGRAHLPDALRTLTERWSQDQGINARVDVTGTREPLSPAIEVSLFRVAQESLTNVAKHAEASRVGVTLSYTGTEVLLDVRDDGGGFANTVGAGFGLTSMRQRIRGVGGHVEVQSAAGEGTSVSARVPAIAPVGTRSRKETGR
>NZ_CP046175.1|WP_154796133.1|5258616_5259237_+|response-regulator
MIRLLVVDDHPIVRGGLRDSFADVEDIVVVGEAGDGAEGIDRAMSLAADVVLMDLRMPEMDGVTATAALREQGSSARVLILTTFDSESDVLPAIEAGAIGYLLKDALPDELMRAVRAAARGESVLAPSVTQHLMGQVRRPGAGTLTDRERQVLQLVANGRSNREAAATLFIGEASIKTHLQHIYDKLGVRDRAAAVAEGYRRRLLT
>NZ_CP046175.1|WP_154796134.1|5259918_5261349_+|ankyrin-repeat-domain-containing-protein
MPEARWNLPDDPSLEWLRSRAKQLRRAFGDPDADEHALAVELVNAFDPGSPSEAIQLSRAQRVLARAFGFPGWSRLREHLETLGTFGRPMAATGEDDSPEDRLLRLGTLNYTQWSDGSDARAMLAQDPTLAVGSAHTMAACGRAEELAELLRDDPAQADRQGGPHRWEPLLYACYSRLGTGDAVRTVQVLLNTGADPNAGFLWRRFASPFTALTGALGGGERGEPPHRAAVALATTLLAAGADPNDNQAFYNRMFTPDDSHLPPLLSHGAGHPHPSVWRNRLGAAYPTPEQMVGEHLRSAAERGYTERVRLLLEHGVDPNTVGYHPNLGDQTAYEIAVRNGHREAVGLLASAGGRSDRLDDYDLLLSAAFAGDTRGVGPLPDLPARRPDAMRLAAEQHGIAALALLVDLGYDVSARGRCGTTALHEAAFRGDSATCRWLVDHGADRTAEDERFSGTPSDWAAHAGHEELAEELSVS
>NZ_CP046175.1|WP_154796135.1|5261500_5261851_+|DoxX-family-protein
MSAATIIVIVITVVMNTAVVIGDIVQAKFVIANSREVGVPDAWLPALAVLKGAGAAGLVVGLAGLPLIGILAASGLTLFYLTALIAHVRARVFHSIAFPTLFFAFALGSLVLLLAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046175_4	4.1\|2742509\|27\|NZ_CP046175\|CRISPRCasFinder	2742509-2742535	27	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	299713-299739	4	0.852
NZ_CP046175_4	4.1\|2742509\|27\|NZ_CP046175\|CRISPRCasFinder	2742509-2742535	27	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	309784-309810	4	0.852
NZ_CP046175_4	4.1\|2742509\|27\|NZ_CP046175\|CRISPRCasFinder	2742509-2742535	27	NC_008383	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8, complete sequence	139172-139198	5	0.815
NZ_CP046175_4	4.1\|2742509\|27\|NZ_CP046175\|CRISPRCasFinder	2742509-2742535	27	NZ_CP018064	Rhodococcus sp. 2G plasmid p1, complete sequence	53323-53349	5	0.815
NZ_CP046175_4	4.1\|2742509\|27\|NZ_CP046175\|CRISPRCasFinder	2742509-2742535	27	NZ_CP035002	Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence	78885-78911	6	0.778
NZ_CP046175_4	4.1\|2742509\|27\|NZ_CP046175\|CRISPRCasFinder	2742509-2742535	27	NZ_CP040822	Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence	106477-106503	6	0.778
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NC_023283	Streptomyces sp. FR1 plasmid pFRL3, complete sequence	430432-430464	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1087276-1087308	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1115352-1115384	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	524170-524202	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	272656-272688	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	392019-392051	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1118968-1119000	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	1606500-1606532	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	845585-845617	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	753909-753941	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	1489133-1489165	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	753909-753941	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	586397-586429	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	753910-753942	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	586397-586429	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	753912-753944	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	586397-586429	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	586401-586433	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	753912-753944	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	414830-414862	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	753912-753944	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	753912-753944	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	586397-586429	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	753906-753938	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	753912-753944	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	408883-408915	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	753912-753944	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	753912-753944	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	408883-408915	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1548088-1548120	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	127477-127509	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1619001-1619033	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1624815-1624847	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1796997-1797029	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1922837-1922869	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	1543636-1543668	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	2064341-2064373	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	1626461-1626493	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	1336100-1336132	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1556368-1556400	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	1586631-1586663	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1551185-1551217	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1510818-1510850	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	1550671-1550703	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	1637941-1637973	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1636342-1636374	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1624845-1624877	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1538550-1538582	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1636342-1636374	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1539196-1539228	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1636342-1636374	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1636342-1636374	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1636342-1636374	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1538572-1538604	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	1544042-1544074	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	1524690-1524722	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	1577639-1577671	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	1616838-1616870	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1633657-1633689	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1538572-1538604	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1645248-1645280	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1538572-1538604	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1538572-1538604	7	0.788
NZ_CP046175_8	8.1\|5250687\|33\|NZ_CP046175\|CRT	5250687-5250719	33	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1636345-1636377	7	0.788
NZ_CP046175_8	8.3\|5250780\|33\|NZ_CP046175\|CRT	5250780-5250812	33	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1188251-1188283	8	0.758
NZ_CP046175_8	8.3\|5250780\|33\|NZ_CP046175\|CRT	5250780-5250812	33	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	180917-180949	8	0.758

1. spacer 4.1|2742509|27|NZ_CP046175|CRISPRCasFinder matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.852

-gcagcgatggcaccgacggcagcacca	CRISPR spacer
cgcttcgg-ggcaccgacggcagcacca	Protospacer
 **  **. *******************

2. spacer 4.1|2742509|27|NZ_CP046175|CRISPRCasFinder matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 4, identity: 0.852

gcagcgatggcaccgacggcagcacca	CRISPR spacer
gcagcgatggcacagacggccgcgcga	Protospacer
************* ****** **.* *

3. spacer 4.1|2742509|27|NZ_CP046175|CRISPRCasFinder matches to NC_008383 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8, complete sequence) position: , mismatch: 5, identity: 0.815

gcagcgatggcaccgacggcagcacca	CRISPR spacer
ccagcgatggcaccggcggcaggcccg	Protospacer
 **************.******  **.

4. spacer 4.1|2742509|27|NZ_CP046175|CRISPRCasFinder matches to NZ_CP018064 (Rhodococcus sp. 2G plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.815

gcagcgatggcaccgacggcagcacca	CRISPR spacer
ggggcgatgtcaccgactgcagcaccg	Protospacer
* .****** ******* ********.

5. spacer 4.1|2742509|27|NZ_CP046175|CRISPRCasFinder matches to NZ_CP035002 (Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence) position: , mismatch: 6, identity: 0.778

gcagcgatggcaccgacggcagcacca	CRISPR spacer
ttggcgatggcaccgacggcagcaagg	Protospacer
 ..*********************  .

6. spacer 4.1|2742509|27|NZ_CP046175|CRISPRCasFinder matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 6, identity: 0.778

gcagcgatggcaccgacggcagcacca	CRISPR spacer
tggtcgatggcaccaacggcagcatca	Protospacer
  . **********.*********.**

7. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NC_023283 (Streptomyces sp. FR1 plasmid pFRL3, complete sequence) position: , mismatch: 7, identity: 0.788

---ggactgctcgtgggcggctgcggccggtgcctg	CRISPR spacer
ttcgg---gctcgtgagcggctgcggccggcgccgc	Protospacer
   **   *******.**************.***

8. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

9. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

10. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

11. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

12. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

13. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

14. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

15. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

16. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

17. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

18. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

19. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

20. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

21. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

22. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

23. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

24. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

25. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

26. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

27. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

28. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

29. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

30. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

31. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

32. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

33. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

34. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

35. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

36. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

37. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

38. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

39. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

40. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

41. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

42. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

43. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

44. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

45. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

46. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

47. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

48. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

49. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

50. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

51. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

52. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

53. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

54. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

55. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

56. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

57. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

58. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

59. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

60. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

61. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

62. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

63. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

64. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

65. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

66. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

67. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

68. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

69. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

70. spacer 8.1|5250687|33|NZ_CP046175|CRT matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggactgc--tcgtgggcggctgcggccggtgcctg	CRISPR spacer
--gccgccaccgtgggcggcagcggccagtgcctg	Protospacer
  .*.**  .********** ******.*******

71. spacer 8.3|5250780|33|NZ_CP046175|CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

ggactgctcctgggcccctccggccggcgcctg	CRISPR spacer
cgtcagcgcctgggccgctccggccggcgcgac	Protospacer
 * * ** ******** *************

72. spacer 8.3|5250780|33|NZ_CP046175|CRT matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 8, identity: 0.758

ggactgc--tcctgggcccctccggccggcgcctg	CRISPR spacer
--accaccatcctgggcacctccggcctgcgccac	Protospacer
  **..*  ******** ********* *****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5526713 : 5597583

Staphylococcus_prophage(16.67%)

tail,transposase,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168217982.1\|5526713_5527028_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.2e-14	43.7
WP_154796366.1\|5527094_5527844_+	hypothetical protein	NA	NA	NA	NA
WP_154796367.1\|5528084_5528972_+	hypothetical protein	NA	NA	NA	NA
WP_154796368.1\|5529748_5530267_-	hypothetical protein	NA	NA	NA	NA
WP_154796369.1\|5530430_5531741_-	MFS transporter	NA	NA	NA	NA
WP_154796370.1\|5531883_5532783_-	phosphotransferase	NA	NA	NA	NA
WP_154796371.1\|5532827_5533433_-	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_154796372.1\|5533413_5534826_-	hypothetical protein	NA	NA	NA	NA
WP_154796373.1\|5535020_5535377_+	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_154796374.1\|5535378_5535864_+	SRPBCC domain-containing protein	NA	NA	NA	NA
WP_154796375.1\|5535942_5538309_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_154796376.1\|5538480_5540730_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_154796377.1\|5540733_5541051_-	hypothetical protein	NA	NA	NA	NA
WP_154796959.1\|5541277_5541655_+	hypothetical protein	NA	NA	NA	NA
WP_154796378.1\|5541691_5544235_-	silent information regulator protein Sir2	NA	NA	NA	NA
WP_154796379.1\|5544381_5544951_-	diguanylate cyclase	NA	NA	NA	NA
WP_168217983.1\|5545146_5552430_-	hypothetical protein	NA	NA	NA	NA
WP_168217984.1\|5552607_5553465_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_154796382.1\|5553654_5554305_-	ATP-binding protein	NA	NA	NA	NA
WP_154796383.1\|5554454_5554805_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_154796384.1\|5554807_5555176_+	DUF1048 domain-containing protein	NA	NA	NA	NA
WP_154796385.1\|5555178_5556009_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	9.3e-26	34.1
WP_154796386.1\|5556005_5556770_+	ABC transporter permease	NA	NA	NA	NA
WP_154796387.1\|5556762_5557992_-	glycosyltransferase	NA	NA	NA	NA
WP_154796388.1\|5558096_5558579_+	AAA family ATPase	NA	NA	NA	NA
WP_154796960.1\|5558615_5559245_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_168217985.1\|5559504_5560515_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_154796390.1\|5560511_5561501_-	family 43 glycosylhydrolase	NA	NA	NA	NA
WP_154796961.1\|5561976_5562825_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_154796391.1\|5562821_5563733_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_154796392.1\|5563778_5565425_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_154796393.1\|5565454_5566087_-	dihydrofolate reductase	NA	NA	NA	NA
WP_154796394.1\|5566215_5566758_+	kinase	NA	NA	NA	NA
WP_168217986.1\|5566765_5567605_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_154796396.1\|5567738_5568677_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_154796397.1\|5568714_5569440_-	DUF4111 domain-containing protein	NA	NA	NA	NA
WP_154796398.1\|5569504_5570137_+	DUF402 domain-containing protein	NA	NA	NA	NA
WP_168217987.1\|5570154_5570634_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_154796400.1\|5570889_5571756_+	AAA family ATPase	NA	NA	NA	NA
WP_154796401.1\|5571826_5572546_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_154796402.1\|5573601_5574198_-	DUF664 domain-containing protein	NA	NA	NA	NA
WP_154796403.1\|5574252_5574903_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_154796962.1\|5575039_5575828_+	phosphotransferase	NA	NA	NA	NA
WP_154796404.1\|5576089_5578720_-	replicative DNA helicase	G9BWB0	Planktothrix_phage	6.8e-22	48.0
WP_154796405.1\|5579103_5580450_+	MATE family efflux transporter	NA	NA	NA	NA
WP_154796406.1\|5580628_5583778_+	hypothetical protein	NA	NA	NA	NA
WP_154796407.1\|5583722_5585405_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_154796408.1\|5585404_5585947_-\|tail	phage tail protein I	NA	NA	NA	NA
WP_154796409.1\|5585948_5587898_-\|plate	putative baseplate assembly protein	A0A1J0GW37	Streptomyces_phage	1.8e-11	24.1
WP_154796410.1\|5587899_5588310_-\|plate	baseplate protein	A0A0E3F3H3	Synechococcus_phage	8.7e-09	34.4
WP_154796411.1\|5588323_5590159_-	VgrG-related protein	NA	NA	NA	NA
WP_154796412.1\|5590145_5590943_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_154796413.1\|5590950_5591388_-\|tail	phage tail protein	NA	NA	NA	NA
WP_154796414.1\|5591401_5592616_-	hypothetical protein	NA	NA	NA	NA
WP_154796415.1\|5593364_5594324_+	hypothetical protein	NA	NA	NA	NA
WP_163541680.1\|5594959_5595118_-	hypothetical protein	NA	NA	NA	NA
WP_154796416.1\|5595114_5595564_-	hypothetical protein	NA	NA	NA	NA
WP_154796417.1\|5595563_5596010_-	hypothetical protein	NA	NA	NA	NA
WP_154796418.1\|5596023_5597583_-\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	5.7e-69	34.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046175

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection