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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP039055 Piscirickettsia salmonis strain Psal-098 chromosome, complete genome 2 crisprs DinG,cas3,DEDDh 0 0 35 0
NZ_CP039058 Piscirickettsia salmonis strain Psal-098 plasmid unnamed3, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP039057 Piscirickettsia salmonis strain Psal-098 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP039059 Piscirickettsia salmonis strain Psal-098 plasmid unnamed4, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP039056 Piscirickettsia salmonis strain Psal-098 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 5 0

Results visualization

1. NZ_CP039055
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039055_1 1537849-1537959 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039055_2 2097103-2097198 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 31805 : 91608 52 Staphylococcus_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_2 123090 : 241158 105 Staphylococcus_phage(12.5%) transposase,protease,tRNA NA
DBSCAN-SWA_3 314961 : 357320 54 Chrysochromulina_ericina_virus(20.0%) transposase NA
DBSCAN-SWA_4 375338 : 425021 54 Staphylococcus_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_5 451093 : 499232 42 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_6 504036 : 558719 52 Streptococcus_phage(22.22%) transposase NA
DBSCAN-SWA_7 590510 : 723895 110 Staphylococcus_phage(13.64%) transposase,plate,tRNA NA
DBSCAN-SWA_8 732537 : 778839 51 Staphylococcus_phage(21.43%) transposase,plate NA
DBSCAN-SWA_9 786999 : 841310 49 Prochlorococcus_phage(33.33%) transposase,protease,tRNA NA
DBSCAN-SWA_10 884990 : 947538 53 Staphylococcus_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_11 951440 : 1018403 57 Bacillus_phage(20.0%) transposase,protease,tRNA NA
DBSCAN-SWA_12 1024016 : 1086543 57 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_13 1095243 : 1144811 39 Acinetobacter_phage(22.22%) transposase NA
DBSCAN-SWA_14 1169534 : 1226914 53 Staphylococcus_phage(37.5%) transposase,tRNA NA
DBSCAN-SWA_15 1243156 : 1290593 42 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_16 1314412 : 1355622 37 Enterobacteria_phage(16.67%) transposase NA
DBSCAN-SWA_17 1386839 : 1435738 40 Bacillus_thuringiensis_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_18 1440036 : 1625602 167 Staphylococcus_phage(19.51%) transposase,protease,integrase,tRNA attL 1506499:1506558|attR 1576924:1577534
DBSCAN-SWA_19 1683937 : 1774252 82 Burkholderia_phage(14.29%) transposase,protease,tRNA NA
DBSCAN-SWA_20 1784951 : 1835436 46 Vibrio_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_21 1897669 : 1912985 15 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_22 1941658 : 1990530 43 uncultured_Mediterranean_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_23 1994961 : 2043828 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_24 2063528 : 2113063 41 Burkholderia_virus(20.0%) transposase,protease,tRNA NA
DBSCAN-SWA_25 2127632 : 2187185 60 unidentified_phage(14.29%) transposase,protease,tRNA NA
DBSCAN-SWA_26 2206247 : 2254470 42 Staphylococcus_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_27 2267319 : 2328287 47 Staphylococcus_phage(30.0%) transposase,integrase attL 2275172:2275231|attR 2325593:2326353
DBSCAN-SWA_28 2349129 : 2376782 28 Staphylococcus_phage(25.0%) transposase,protease NA
DBSCAN-SWA_29 2415829 : 2543293 106 Burkholderia_virus(25.0%) transposase,tRNA NA
DBSCAN-SWA_30 2553014 : 2604428 55 Bacillus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_31 2613722 : 2732183 108 Staphylococcus_phage(29.63%) transposase,tRNA NA
DBSCAN-SWA_32 2769961 : 2822990 45 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_33 2837556 : 2891817 51 Staphylococcus_phage(37.5%) transposase NA
DBSCAN-SWA_34 2899403 : 2948987 44 Bodo_saltans_virus(14.29%) transposase,tRNA NA
DBSCAN-SWA_35 3076669 : 3142206 58 Hokovirus(14.29%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP039058
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 32334 : 46130 18 Moraxella_phage(18.18%) head,transposase,capsid,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP039059
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3402 : 19424 21 unidentified_phage(35.71%) head,capsid,transposase,tail,integrase,terminase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP039056
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 51260 57 Streptococcus_phage(43.75%) transposase NA
DBSCAN-SWA_2 56352 : 126621 64 Streptococcus_phage(43.75%) portal,integrase,transposase,terminase attL 55590:55649|attR 122229:122888
DBSCAN-SWA_3 132476 : 145138 14 Streptococcus_phage(44.44%) portal,transposase NA
DBSCAN-SWA_4 149634 : 160432 10 Salmonella_phage(40.0%) transposase NA
DBSCAN-SWA_5 166796 : 172699 9 Staphylococcus_phage(28.57%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage