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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP039088 Piscirickettsia salmonis strain Psal-111 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 6 0
NZ_CP039089 Piscirickettsia salmonis strain Psal-111 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP039091 Piscirickettsia salmonis strain Psal-111 plasmid unnamed4, complete sequence 0 crisprs NA 0 0 2 0
NZ_CP039087 Piscirickettsia salmonis strain Psal-111 chromosome, complete genome 2 crisprs DinG,cas3,DEDDh 0 0 37 0
NZ_CP039090 Piscirickettsia salmonis strain Psal-111 plasmid unnamed3, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP039088
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 117223 121 Streptococcus_phage(40.0%) terminase,portal,integrase,transposase attL 11253:11312|attR 119456:121191
DBSCAN-SWA_2 125037 : 126659 3 Acinetobacter_phage(50.0%) transposase NA
DBSCAN-SWA_3 133029 : 135447 2 unidentified_phage(50.0%) portal,transposase NA
DBSCAN-SWA_4 140165 : 147133 7 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_5 153168 : 161825 8 Streptococcus_phage(75.0%) transposase NA
DBSCAN-SWA_6 168189 : 174092 9 Staphylococcus_phage(28.57%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP039091
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3402 : 10200 9 unidentified_phage(50.0%) transposase,integrase NA
DBSCAN-SWA_2 14343 : 27224 17 unidentified_phage(40.0%) tail,transposase,terminase,capsid,head NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP039087
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039087_1 1537426-1537536 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039087_2 2096769-2096864 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 31805 : 91594 53 Staphylococcus_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_2 123070 : 241147 105 Staphylococcus_phage(12.5%) tRNA,transposase,protease NA
DBSCAN-SWA_3 314959 : 357318 54 Chrysochromulina_ericina_virus(20.0%) transposase NA
DBSCAN-SWA_4 375336 : 425307 57 Staphylococcus_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_5 451379 : 499518 42 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_6 504322 : 559005 52 Streptococcus_phage(22.22%) transposase NA
DBSCAN-SWA_7 590796 : 724190 111 Staphylococcus_phage(13.64%) tRNA,transposase,plate NA
DBSCAN-SWA_8 732832 : 779149 51 Staphylococcus_phage(21.43%) transposase,plate NA
DBSCAN-SWA_9 787309 : 841620 49 Prochlorococcus_phage(33.33%) tRNA,protease,transposase NA
DBSCAN-SWA_10 885300 : 947813 53 Staphylococcus_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_11 951715 : 1018678 57 Bacillus_phage(20.0%) tRNA,transposase,protease NA
DBSCAN-SWA_12 1024291 : 1086818 57 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_13 1095518 : 1145086 39 Acinetobacter_phage(22.22%) transposase NA
DBSCAN-SWA_14 1169809 : 1226203 52 Staphylococcus_phage(37.5%) tRNA,transposase NA
DBSCAN-SWA_15 1242445 : 1290170 42 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_16 1313989 : 1355199 37 Enterobacteria_phage(16.67%) transposase NA
DBSCAN-SWA_17 1386416 : 1435315 40 Bacillus_thuringiensis_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_18 1439613 : 1508504 60 Staphylococcus_phage(20.0%) transposase NA
DBSCAN-SWA_19 1517225 : 1625179 104 Staphylococcus_phage(21.74%) integrase,tRNA,transposase,protease attL 1506076:1506135|attR 1576501:1577111
DBSCAN-SWA_20 1683514 : 1773829 82 Burkholderia_phage(14.29%) tRNA,transposase,protease NA
DBSCAN-SWA_21 1784528 : 1835013 46 Vibrio_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_22 1897335 : 1912651 16 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_23 1941324 : 1983081 38 uncultured_Mediterranean_phage(40.0%) tRNA,transposase NA
DBSCAN-SWA_24 1987424 : 2043494 49 Klosneuvirus(22.22%) tRNA,transposase NA
DBSCAN-SWA_25 2063194 : 2112729 41 Burkholderia_virus(20.0%) tRNA,protease,transposase NA
DBSCAN-SWA_26 2127298 : 2254136 117 Staphylococcus_phage(14.81%) tRNA,transposase,protease NA
DBSCAN-SWA_27 2266985 : 2327953 47 Staphylococcus_phage(30.0%) integrase,transposase attL 2274838:2274897|attR 2325259:2326019
DBSCAN-SWA_28 2348795 : 2376448 28 Staphylococcus_phage(25.0%) protease,transposase NA
DBSCAN-SWA_29 2415693 : 2449142 23 Burkholderia_virus(33.33%) tRNA,transposase NA
DBSCAN-SWA_30 2484593 : 2543157 55 Burkholderia_virus(28.57%) tRNA,transposase NA
DBSCAN-SWA_31 2552878 : 2604292 55 Bacillus_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_32 2613586 : 2657301 41 Staphylococcus_phage(30.0%) tRNA,transposase NA
DBSCAN-SWA_33 2671978 : 2732047 57 Staphylococcus_phage(26.67%) tRNA,transposase NA
DBSCAN-SWA_34 2769825 : 2822854 45 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_35 2837420 : 2891681 51 Staphylococcus_phage(37.5%) transposase NA
DBSCAN-SWA_36 2899267 : 2948926 43 Bodo_saltans_virus(14.29%) tRNA,transposase NA
DBSCAN-SWA_37 3076608 : 3141857 56 Hokovirus(14.29%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP039090
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 5715 : 19511 18 Moraxella_phage(18.18%) tail,transposase,head,capsid NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage