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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP039173 Piscirickettsia salmonis strain Psal-138 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP039175 Piscirickettsia salmonis strain Psal-138 plasmid unnamed4, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP039172 Piscirickettsia salmonis strain Psal-138 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 6 0
NZ_CP039171 Piscirickettsia salmonis strain Psal-138 chromosome, complete genome 2 crisprs DinG,cas3,DEDDh 0 0 36 0
NZ_CP039174 Piscirickettsia salmonis strain Psal-138 plasmid unnamed3, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP039171
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039171_1 1537155-1537265 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039171_2 2096498-2096593 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 31805 : 91594 52 Staphylococcus_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_2 123076 : 241144 105 Staphylococcus_phage(12.5%) protease,tRNA,transposase NA
DBSCAN-SWA_3 314947 : 357306 54 Chrysochromulina_ericina_virus(20.0%) transposase NA
DBSCAN-SWA_4 375324 : 425007 54 Staphylococcus_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_5 451079 : 499218 42 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_6 504022 : 558705 52 Streptococcus_phage(22.22%) transposase NA
DBSCAN-SWA_7 590496 : 723890 111 Staphylococcus_phage(13.64%) plate,tRNA,transposase NA
DBSCAN-SWA_8 732532 : 778848 52 Staphylococcus_phage(21.43%) plate,transposase NA
DBSCAN-SWA_9 787008 : 841319 49 Prochlorococcus_phage(33.33%) protease,tRNA,transposase NA
DBSCAN-SWA_10 884999 : 947540 52 Staphylococcus_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_11 951442 : 1018405 57 Bacillus_phage(20.0%) protease,tRNA,transposase NA
DBSCAN-SWA_12 1024018 : 1086545 57 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_13 1095245 : 1144813 39 Acinetobacter_phage(22.22%) transposase NA
DBSCAN-SWA_14 1169536 : 1225932 51 Staphylococcus_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_15 1242174 : 1289899 42 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_16 1313718 : 1354928 37 Enterobacteria_phage(16.67%) transposase NA
DBSCAN-SWA_17 1386145 : 1439879 46 Bacillus_thuringiensis_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_18 1458814 : 1508233 45 Staphylococcus_phage(23.08%) transposase NA
DBSCAN-SWA_19 1516954 : 1576525 58 Staphylococcus_phage(25.0%) protease,tRNA,transposase,integrase attL 1505805:1505864|attR 1576230:1576840
DBSCAN-SWA_20 1581977 : 1624908 41 Staphylococcus_phage(20.0%) transposase NA
DBSCAN-SWA_21 1683243 : 1773558 82 Burkholderia_phage(14.29%) protease,tRNA,transposase NA
DBSCAN-SWA_22 1784257 : 1834742 46 Vibrio_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_23 1897064 : 1912380 15 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_24 1941053 : 1982810 38 uncultured_Mediterranean_phage(40.0%) tRNA,transposase NA
DBSCAN-SWA_25 1987153 : 2043223 49 Klosneuvirus(22.22%) tRNA,transposase NA
DBSCAN-SWA_26 2062923 : 2112458 41 Burkholderia_virus(20.0%) protease,tRNA,transposase NA
DBSCAN-SWA_27 2127027 : 2253865 116 Staphylococcus_phage(14.81%) protease,tRNA,transposase NA
DBSCAN-SWA_28 2266714 : 2327682 47 Staphylococcus_phage(30.0%) transposase,integrase attL 2274567:2274626|attR 2324988:2325748
DBSCAN-SWA_29 2348524 : 2376177 28 Staphylococcus_phage(25.0%) protease,transposase NA
DBSCAN-SWA_30 2415422 : 2542886 105 Burkholderia_virus(25.0%) tRNA,transposase NA
DBSCAN-SWA_31 2552607 : 2604021 55 Bacillus_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_32 2613315 : 2731776 108 Staphylococcus_phage(29.63%) tRNA,transposase NA
DBSCAN-SWA_33 2769554 : 2822583 45 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_34 2837149 : 2891410 51 Staphylococcus_phage(37.5%) transposase NA
DBSCAN-SWA_35 2898996 : 2948673 43 Bodo_saltans_virus(14.29%) tRNA,transposase NA
DBSCAN-SWA_36 3076355 : 3141604 57 Hokovirus(14.29%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP039172
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 117511 121 Streptococcus_phage(40.0%) transposase,integrase,terminase,portal attL 11253:11312|attR 117877:119612
DBSCAN-SWA_2 123458 : 125080 3 Acinetobacter_phage(50.0%) transposase NA
DBSCAN-SWA_3 131450 : 133868 2 unidentified_phage(50.0%) transposase,portal NA
DBSCAN-SWA_4 138586 : 145554 7 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_5 154421 : 158061 5 unidentified_phage(50.0%) transposase NA
DBSCAN-SWA_6 161511 : 172973 17 Streptococcus_phage(18.18%) transposase,head,capsid,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP039175
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3315 : 19337 21 unidentified_phage(35.71%) transposase,integrase,terminase,capsid,tail,head NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP039174
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 5716 : 19512 18 Moraxella_phage(18.18%) capsid,tail,head,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage