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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP039180 Piscirickettsia salmonis strain Psal-139 plasmid unnamed4, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP039176 Piscirickettsia salmonis strain Psal-139 chromosome, complete genome 2 crisprs DinG,cas3,DEDDh 0 0 38 0
NZ_CP039179 Piscirickettsia salmonis strain Psal-139 plasmid unnamed3, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP039178 Piscirickettsia salmonis strain Psal-139 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP039177 Piscirickettsia salmonis strain Psal-139 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 6 0

Results visualization

1. NZ_CP039179
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 5714 : 19511 19 Moraxella_phage(16.67%) tail,head,capsid,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP039176
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039176_1 1537154-1537264 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039176_2 2096472-2096567 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 31805 : 91594 52 Staphylococcus_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_2 123076 : 241144 106 Staphylococcus_phage(12.5%) tRNA,transposase,protease NA
DBSCAN-SWA_3 314947 : 357306 54 Chrysochromulina_ericina_virus(20.0%) transposase NA
DBSCAN-SWA_4 366729 : 421642 60 uncultured_Caudovirales_phage(20.0%) tRNA,transposase,protease NA
DBSCAN-SWA_5 451079 : 499218 42 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_6 504022 : 558705 52 Streptococcus_phage(22.22%) transposase NA
DBSCAN-SWA_7 590496 : 723890 111 Staphylococcus_phage(13.64%) plate,tRNA,transposase NA
DBSCAN-SWA_8 732532 : 778848 51 Staphylococcus_phage(21.43%) plate,transposase NA
DBSCAN-SWA_9 787008 : 841319 49 Prochlorococcus_phage(33.33%) tRNA,transposase,protease NA
DBSCAN-SWA_10 884999 : 947540 53 Staphylococcus_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_11 951442 : 1018405 56 Bacillus_phage(20.0%) tRNA,transposase,protease NA
DBSCAN-SWA_12 1024018 : 1086545 57 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_13 1095245 : 1144813 39 Acinetobacter_phage(22.22%) transposase NA
DBSCAN-SWA_14 1169536 : 1225932 52 Staphylococcus_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_15 1242174 : 1289899 42 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_16 1313718 : 1354927 36 Enterobacteria_phage(16.67%) transposase NA
DBSCAN-SWA_17 1386144 : 1439878 45 Bacillus_thuringiensis_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_18 1458813 : 1518723 49 Staphylococcus_phage(17.65%) tRNA,transposase NA
DBSCAN-SWA_19 1541083 : 1576523 36 Staphylococcus_phage(33.33%) integrase,transposase,protease attL 1562424:1562483|attR 1572884:1573174
DBSCAN-SWA_20 1581975 : 1624906 41 Staphylococcus_phage(20.0%) transposase NA
DBSCAN-SWA_21 1683241 : 1773556 82 Burkholderia_phage(14.29%) tRNA,transposase,protease NA
DBSCAN-SWA_22 1784255 : 1834740 46 Vibrio_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_23 1897038 : 1912354 16 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_24 1941027 : 1982784 39 uncultured_Mediterranean_phage(40.0%) tRNA,transposase NA
DBSCAN-SWA_25 1987127 : 2043197 49 Klosneuvirus(22.22%) tRNA,transposase NA
DBSCAN-SWA_26 2062897 : 2112432 41 Burkholderia_virus(20.0%) tRNA,transposase,protease NA
DBSCAN-SWA_27 2127001 : 2253839 116 Staphylococcus_phage(14.81%) tRNA,transposase,protease NA
DBSCAN-SWA_28 2266688 : 2327656 47 Staphylococcus_phage(30.0%) integrase,transposase attL 2274541:2274600|attR 2324962:2325722
DBSCAN-SWA_29 2348498 : 2376151 28 Staphylococcus_phage(25.0%) transposase,protease NA
DBSCAN-SWA_30 2415396 : 2448845 23 Burkholderia_virus(33.33%) tRNA,transposase NA
DBSCAN-SWA_31 2484296 : 2542860 55 Burkholderia_virus(28.57%) tRNA,transposase NA
DBSCAN-SWA_32 2552581 : 2603995 55 Bacillus_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_33 2613289 : 2657004 42 Staphylococcus_phage(30.0%) tRNA,transposase NA
DBSCAN-SWA_34 2671681 : 2731750 56 Staphylococcus_phage(26.67%) tRNA,transposase NA
DBSCAN-SWA_35 2769528 : 2822557 45 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_36 2837123 : 2891384 51 Staphylococcus_phage(37.5%) transposase NA
DBSCAN-SWA_37 2898970 : 2948616 43 Bodo_saltans_virus(14.29%) tRNA,transposase NA
DBSCAN-SWA_38 3076298 : 3141547 55 Hokovirus(14.29%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP039180
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3344 : 19366 21 unidentified_phage(35.71%) integrase,head,capsid,terminase,tail,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP039177
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 117510 120 Streptococcus_phage(40.0%) terminase,transposase,portal,integrase attL 11253:11312|attR 117876:119611
DBSCAN-SWA_2 123457 : 125079 3 Acinetobacter_phage(50.0%) transposase NA
DBSCAN-SWA_3 131449 : 133867 2 unidentified_phage(50.0%) transposase,portal NA
DBSCAN-SWA_4 138585 : 145553 7 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_5 154420 : 158060 5 unidentified_phage(50.0%) transposase NA
DBSCAN-SWA_6 161510 : 172972 17 Streptococcus_phage(18.18%) head,capsid,transposase,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage