CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	1 crisprs	DEDDh	0	1	2	0
NZ_CP039988	Pseudomonas aeruginosa strain T2436 chromosome, complete genome	2 crisprs	csa3,DEDDh,cas3,WYL,PD-DExK,DinG,RT	0	0	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP039989_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039989_1

26532-26622

Orphan

Consensus_repeat	Method
TTCCCGGTTTAGCATGCGAAACTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP039989_1

>merge|NZ_CP039989|1|26532-26622|CRISPRCasFinder
TTCCCGGTTTAGCATGCGAAACTGGGTTCAAATTTTCCGGCTGATGACTTTCCTGCGGAGCATCCGGTTCCGGTTTAGCATGCGAAACTGG

>NZ_CP039989|1|1|26532-26622|CRISPRCasFinder
TTCCCGGTTTAGCATGCGAAACTGG	GTTCAAATTTTCCGGCTGATGACTTTCCTGCGGAGCATCCG
GTTCCGGTTTAGCATGCGAAACTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039989.1\|WP_042854759.1\|14999_15800_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039989.1\|WP_019484880.1\|18666_19020_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039989.1\|WP_020191948.1\|18986_19448_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039989.1\|WP_023111017.1\|33854_34715_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP039989.1\|WP_128622838.1\|32623_33010_-\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NZ_CP039989.1\|WP_019439029.1\|29336_30128_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224271
NZ_CP039989.1\|WP_023111015.1\|37350_38550_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|272946
NZ_CP039989.1\|WP_010792594.1\|36451_37351_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP039989.1\|WP_021018432.1\|21220_21523_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039989.1\|WP_153274579.1\|39161_39299_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039989.1\|WP_010792602.1\|22639_23572_-\|chemotaxis-protein-CheB	unknown	unknown	gnl\|CDD\|376531
NZ_CP039989.1\|WP_079278433.1\|20195_21158_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377717
NZ_CP039989.1\|WP_020191947.1\|17101_18670_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223642
NZ_CP039989.1\|WP_019439028.1\|30124_32149_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP039989.1\|WP_010794215.1\|19566_20112_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039989.1\|WP_019484886.1\|34834_36277_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP039989.1\|WP_019439027.1\|32145_32634_-\|CheW-domain-containing-protein	unknown	unknown	gnl\|CDD\|214588
NZ_CP039989.1\|WP_019484884.1\|33151_33793_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039989.1\|WP_019484878.1\|15970_17077_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|238082
NZ_CP039989.1\|WP_100219702.1\|14124_14814_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271319

Protein	Function_ID	Function_description	E-value
NZ_CP039989.1\|WP_023111015.1\|37350_38550_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|272946	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein. This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.	1.89546e-19
NZ_CP039989.1\|WP_023111017.1\|33854_34715_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.95576e-41
NZ_CP039989.1\|WP_128622838.1\|32623_33010_-\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	2.74181e-27
NZ_CP039989.1\|WP_019439029.1\|29336_30128_-\|hypothetical-protein	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	4.75748e-46
NZ_CP039989.1\|WP_019484878.1\|15970_17077_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|238082	cd00140, beta_clamp, Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. .	3.67426e-92
NZ_CP039989.1\|WP_010792594.1\|36451_37351_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	3.61725e-35
NZ_CP039989.1\|WP_010792602.1\|22639_23572_-\|chemotaxis-protein-CheB	gnl\|CDD\|376531	pfam01339, CheB_methylest, CheB methylesterase.	5.28159e-45
NZ_CP039989.1\|WP_020191947.1\|17101_18670_+\|hypothetical-protein	gnl\|CDD\|223642	COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription].	3.39564e-29
NZ_CP039989.1\|WP_019439028.1\|30124_32149_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.37587e-19
NZ_CP039989.1\|WP_019484886.1\|34834_36277_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	5.25757e-09
NZ_CP039989.1\|WP_019439027.1\|32145_32634_-\|CheW-domain-containing-protein	gnl\|CDD\|214588	smart00260, CheW, Two component signalling adaptor domain.	1.84852e-12
NZ_CP039989.1\|WP_079278433.1\|20195_21158_+\|hypothetical-protein	gnl\|CDD\|377717	pfam06834, TraU, TraU protein. This family consists of several bacterial TraU proteins. TraU appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments.	2.92527e-07
NZ_CP039989.1\|WP_100219702.1\|14124_14814_+\|hypothetical-protein	gnl\|CDD\|271319	cd15457, NADAR, Escherichia coli swarming motility protein YbiA and related proteins. This family of uncharacterized domains was initially classified as Domain of Unknown Function (DUF1768). It contains members such as the E. coli swarming motility protein YbiA. Mutations in YbiA cause defects in Escherichia coli swarming, but not necessarily in motility. More recently, this family has been predicted to be involved in NAD-utilizing pathways, likely to act on ADP-ribose derivatives, and has been named the NADAR (NAD and ADP-ribose) superfamily.	0.00224097

>NZ_CP039989.1|WP_010792602.1|22639_23572_-|chemotaxis-protein-CheB
MRVGIISTSNVQVALIQEVLSPVVGELTVYDMSHVENGDLSATGVHALIVDFSDEAILNSEDVLEMLGRDEPVCVLNERELYSMSAAERQAWCNKLVDELKRSIPDLAESLDARKAEIESRNANDTWVIGCSSGGPQAIRDFLGELPTLPVSIFLVQHLTEAAFNTYVQRVRECTSRWEVVAAEHGAKLKAGTIFVVPRDTTVEVRSGVIQLRPVKPNTYSPSINSVIRSVFSSIAGKLGVIILTGMGDDGASGIRDLKGKAKIVMAQDAESSQARSMPDAARETGAVSFSGKPAELARHMYRMYGIGNH
>NZ_CP039989.1|WP_021018432.1|21220_21523_+|hypothetical-protein
MDSFQITTSPLLRQFATRLDPRTIQVTTKLGVATIIRADFDPVSFPADEDLQEDFLRDLINRANPGALELLNQSLGKCLGDQAKAIRQVLGSGTSETGRN
>NZ_CP039989.1|WP_079278433.1|20195_21158_+|hypothetical-protein
MSAAASAAAAIGFGVKTQEAAAMSASIATLLFIDPITLEYKIFGPCCHFCPDHLIVSHYQPVALVEVIKGGGDTVLGQPIGGPLSVGTDNNDYTSMAVRIWQLPDWAIDIAMGYQSCKLCGVDAARTTNFSLTSKFDMCGAVANPIVSKGVSAFNSALPNCFPKLLYSTEFDPTWNTGCRDIAAAEAIAGVICNPLTGSFSIPGMEICIGQWGGLYPRQMASHNDNAAIAAGIAAYRAIHLSGFTIGTFPFSAALSVGKLQQTQPWPTVGFKAGSALLDTAMRLYPVSLEELYAFVWWTPVVCCKEYEEIMGVCSPTICG
>NZ_CP039989.1|WP_010794215.1|19566_20112_+|hypothetical-protein
MRDNDDAFQTIEVPVNLNGTVKVRVPSHCHPEEVEKLALEQFKARLNQPVTFGESGYCSYEFRGEAWSTRGQARVGNLEFEVRHDMALNVSGAMVALAPAAGQFGADRLRARLTAYVSREAVYITGRKPGTDLEHVMVMVDIQDGEPTVNVMSPDGDDQFDADGSMPMVSVGFPGMCWNLN
>NZ_CP039989.1|WP_020191948.1|18986_19448_-|hypothetical-protein
MESQILGVIGSVLLLGAIAALWIGRLNSAAGKASAGEEAHSSNHHLDETLPAKPKINMVPHVSATPVQASPTEPERVIEMAKAEVHVEEPVLVTRPEVDCDDAAMNLQLADQLLVVGDFEGVAEYAKLVLEMDTASVRQRDRAQILLRREMAR
>NZ_CP039989.1|WP_019484880.1|18666_19020_+|hypothetical-protein
MSNLSLPLYGAEIEAFGVLGTFIGADLMDDGDLHFTLKMPESNVRLAHSYAVAEDQFCLVVGASLIQVSKKNCVWRSSPGFDVTDDEGFIAFRVDRHVRAAVTVMKFQRAISRLNRI
>NZ_CP039989.1|WP_020191947.1|17101_18670_+|hypothetical-protein
MSHTDRSNLTEGTNTKLDCRIVNQEARKGFLLPNSLPALPSLEGPKALLSLSQEQSLGYRIILGQLSLLKAISSDTSILQGLVTDIWNSIGENDSVDKAAALIFQDGAWVRAGSIPDSEFASILRKKLNTIQTLIAELKAFALPGFEDNLFVAAVRDEIQKKVLEILPYDLILNRAAGEFRTKCKELSSLCKGLVKYISEEVRLPRSKVARIINGKWTSPKLMPGLMLSGGYELKLYPQRELRRLRQEIVEKQRDILSAASTADMPAEQLLAALEGFNSAERVVHETVGFFANANMRLVDQIVSGYRFATDLEQVRSAAQLGLVRSIYRYAPEMGFKFSTLGMTWIRQTILRDLTQQELIRLPEGSHGALSKLTAALKEQPNASKKHLSKVCGLSMDDVENLLYFVGVGKPMSIDSTFQEGGSSEAEGMHDLLADSNNSFVEEVMEEDAAGYITEVLGDVLNQRELQVVVARYGIGGAEAQTLATLSEIMGVSKERVRQIECEALKKLRESEHAECLLEILE
>NZ_CP039989.1|WP_019484878.1|15970_17077_+|DNA-polymerase-III-subunit-beta
MKFTVQAAPLAAILKQCGRVASKKAGDINGNFLIDVQDGHLNVTANNGHQQMSLHLQDPSLIVREAGSVCISASKFEQIVSSLPVDRDVTVSVGEEKATVTCGRSRFSIATLPASSFPKALHSDGQVQTALTIESHALRDGIRGIAFCVARNDVRQYLNGMLFEVSEGKLTLVGTDGHRMGMVELQIEKSSSMKFILPVACLEDVASFASHGYVTITHSGNLVSFTAVNGTMTSRLVDGAFPNYCALIERAETGQLINLNRDAITSAVARVSLLSDGKSQAVRLKFCQQTVEVVSVSNDALSEAEDLLPCDFDAAPFDVGFNSRYAQEAFKAVSSTDLQLFYSGPASGTLIKAKDCPHQKFVLMPVRL
>NZ_CP039989.1|WP_042854759.1|14999_15800_+|hypothetical-protein
MWRAAAAVRIAGAQFPETLKSLQSSVEAFSCTAKGFYWEEASAAVQEAQHGRFRNALSAAQQIDGKDARTYALSLIVQISSEAKDDKALGKALDVLSKDDERAYMDALLLRLQVLLAQGDLERSSALQNHLLAFFAKDPETGVEPATEMAITYLSQGLKLDARDFLVRAADGIPGVRSADNLKLFNLVGQVIDGYRPIPDDFYQFSSDSARLRAYLVVARYYRNTGNRAMVTSMLVDASRFTQKASFKANRTEVASRLADFLRDSH
>NZ_CP039989.1|WP_100219702.1|14124_14814_+|hypothetical-protein
MCSEGQQVETYLSLMHFIEAEKFRGLDEGYRRYILSIEDRDDFILETAGITQGVRRPDWDEIKAPMVRAGLWMQLVQHKDSMVPLVTHPGCECPVGLVNEAIQEIYERLHSGDPLRKVLLAGDDSPDALRNSSFDEVLDHIFNVRQPDEVIVSADGGVSMRSAAYAARRYIPLRFLPRAQSAAEFAENAISQATHVFLLGPHGQASFAQAAYDLACETGLVAHQVELPA
>NZ_CP039989.1|WP_019439029.1|29336_30128_-|hypothetical-protein
MNTVDDLILDEGMANSWMKIIEERFAIEIDEHRRVAFARALTSFACETGETLESLFKLFVSGRLEEAQRFQILHLATNHETRFFRYPPSLSAIRDACADIRRPPRVLSVGCSTGEEPYSIACTLLRAGHAAFHVHGTDVSQPCIDKARQGIYRGHPEIRLDVAAPQGQHEVRFHAWIRDMVTFEQHNILAERPVNFTAPDVIITQNMLIYYRVETRHLILQKLAAMLPIGGYLLTGPAEDGNWNPLGLKRLPNHLLNLFVRVA
>NZ_CP039989.1|WP_019439028.1|30124_32149_-|methyl-accepting-chemotaxis-protein
MRQDRMSNNFSFVPLTAVLLIATGSAAAWTGYSFLKDTRADSFYVAETYELKSAAMQTIYLADKAAADGAYASQLVEAESQVERALMHLRNGDPIKGIPGAPESVLRSLESLSASWDGIAPSIAKLISGQSGTEAFSRSAKEAKTAVVKVIESGRSAEALLSKLNATSQQKSQLAQALTELEADVAGVTATTVVDATGLQGAEAGVSKYLGALTAFGNSLPRDKAMMDELIKSYRSAQSAQSLISQASGLSANSAQNLPHAKEIWQARDKIASSTDTLIASVKALPDARAINPTLVAVLGALTIGLAILSVLLVARVSASRAQAVETRGSTIEGSQRERSKELSLLLTEIERVGRGELDLTLTDDRDSTKEIAKLLNQVFARFHEIFTETSQTVMGLAAATEQTITTARNVDRNRDEQFRAIEHISSLIADMNTFINLIQQLMGDTQRVANSVANKVHAGSESVNGVHEGILVQTQHLNSIQHRNKHLIERFQMLERISEFVKEVATKSELVAYNAYLVSDQVEGNTELSRAMAKSGEAVQDLSTQSKAVVSEIGQLLKDMNEAARDTQTAVDISLSEMQGLLTRSNAALASLKDIQSITESLTTSVDDVNQRTNSLISQSSEVSETMSSIRHYASENSAASEQTASAMNNLNRQAQNLHSGIQDFYSKQRERA
>NZ_CP039989.1|WP_019439027.1|32145_32634_-|CheW-domain-containing-protein
MSSDISSGRYKCIGYRIGDTYCLSPSLAVNAITQVPVSPTQVPGTKPWLLGATKLDGDIIPFVNIARFLSIPQTMSRAEHSNPVALIVRGGADVGDVGVIVDQVVGFIPSGNLTDAPNANLKIPPGLGACLVGVVTGDARTWAVIDIQALIADPKMQTIDLT
>NZ_CP039989.1|WP_128622838.1|32623_33010_-|response-regulator
MSNIRSVCIVDDSPGMRKMGAGFLQKADIEVHLAKDGYEALRVIREARPDACFIDIEMPNLDGLKLASILRASTQFKHLPIAMLSSASSPFDIQKGLLAGADIYLTKPFTGDKIAKALIDMEAIIDEQ
>NZ_CP039989.1|WP_019484884.1|33151_33793_+|hypothetical-protein
MRKSNHRAAFASDPKFLERIARQLQSEPTSTLPSPADIKPSKAVQRLEKVQTANMDGRKDRISLESTSRVLTICFPGAKLVSLNTMLRVHDAKATRLKNTWLKRVEALRYTYKAVLEEWIAIATYPLLVEEVYITGESSLLDPESVTAACKPVIDALVSNGFLPDDDPSHIAHPLPYTSRGESPGLVICLRPAGRPWGLIEDATIQVASSLGR
>NZ_CP039989.1|WP_023111017.1|33854_34715_+|ParB/RepB/Spo0J-family-partition-protein
MYQSETGINPTASHCLGINLVPVEHRDVDVDLMQPGIWQTRRNFTLAELEELGDSMVKAGGNVTPVVLCPRAQGGYFIISGERRWRAAQLKMIPRLHCRIGHYTDNQARFISAVENVLRVQLNPIEEAQAYADIQETGLSHEQIGKELGKSRSHVSNYLRLLTLDITAKDFLIHGKLTATQARPLCSLDSKGIQREVATKAVRLGWSVKRIEDEVAKHLNKPKPKVNLPKQDADIARLTRLVSDHTGYPCVIQKTPSGNWQMGFLMTGDDQFAGLLERLGIKVDEC
>NZ_CP039989.1|WP_019484886.1|34834_36277_+|hypothetical-protein
MLNRPFPVPTLLAIALTAVLAGCTSTHEPVELASIEPQSQYDQRIQDGLGSQKYTESQILYMRRLNEFKDQIDSLEKQKQALEASLSTTAYEQDLGSGKAPSTESSRIEEFQAATQASQARVAEENSKAAIRQSIIENDRDRALLEAENRAMAEIEQLKAADAAKQADLAKLKAQLAEQKAESSRTLEKQRFAMAVANADAERRAANAVVEINNQISELKGQLSQLETKLAAAQKEHERLADLSRQLQTPVAVTAAITDQPSPEIGSLTESRIAEIKARLAREKTEITAKARTEVAALTAGAEIKKATVVAPVVTGRAVYAGSYGEKPTTYAKVDDKPVKQDAKPLAIASKQAPVVTVAKFEPKISPVVIQRGSDAGSAVLAGGPVTSSVQSPAPIVVSPKSRVIYDVLYVYKDEGSWQKFQRYLEAYGIKDFEPVHKGSTYYLYMGRFYDKLAAAKRVEYLNRTTNTNHATVHPQEVPM
>NZ_CP039989.1|WP_010792594.1|36451_37351_+|ParA-family-protein
MAAIPFKKRKLLADVHAVTNQKGGVGKTTIDFHWLVYLVEQGYRVLGIDLDSQGNFSSRLAPDSRNGGLRSAHLFKEELPDLKPLQTALGADLIYALNKDDELSSVEQIGLSAVGPFAKHIQKLAEDYDYIVIDTPPTNGVRMIAASVVSDHIFVPVELAAFAVDGVISLIETFDMVGPLFGTQITPTGIICNKYNTRVNAHRESLEDLRKVVGPKILQNSLSIRGAIDTALRQCKPVWSMRTNGAERETGVEMIRLMEEMAHRAGVEITPVVIAPKVPRKKKPVKKKSQSRAKKVGAI
>NZ_CP039989.1|WP_023111015.1|37350_38550_+|ParB/RepB/Spo0J-family-partition-protein
MAKTLDLGSLTRLNDLMDLGRAAQENQIILLSVDQIEVKPQVRKDFKEIEELAASYDDEGQQTPIIVGPMNPETQKYPLKKGGRRYAAAVLRPGFKLKAIVDGKKRTPAKEILSQLIENEQRQNLNPYEVGQALAEAKAEAKAAGEPLSNQDLATYMGKSETYISIHLGLADLPEELVDLIKGGITSDSEVLREMKQLKNLQPETFTAFIERAKAEGSISRQQVRDAVRAAKGKTVPTKAPPAQEPQTEHQAGKVGNPAQDGVGKGGNSSQANPPGQTDQSPVSHAKPEGQSKAQGQGETNTPAVVTPPSQEQGPAAAPNCSSKKNGKGYIPITAERQVIGIKVALDSAVASGYLMNDRVSEDPSKAWCMLMIGGSQQPKQIKVDQIDIVSVAAMETDG
>NZ_CP039989.1|WP_153274579.1|39161_39299_+|hypothetical-protein
MKYALTFAFALSAALFLFQGDDARNTMTKVQHDRCASFEAAGVEC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	210486-210526	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_LT969519	Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: RW109 plasmid 1	261779-261819	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	209984-210024	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_CP029094	Pseudomonas aeruginosa strain AR441 plasmid unnamed3, complete sequence	46635-46675	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_CP040126	Pseudomonas aeruginosa strain PA298 plasmid pBM908, complete sequence	204335-204375	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	276757-276797	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	26557-26597	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_CP039991	Pseudomonas aeruginosa strain T2101 plasmid pBT2101, complete sequence	26715-26755	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	78857-78897	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	43163-43203	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	352188-352228	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	29964-30004	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	28143-28183	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	MF344568	Pseudomonas aeruginosa plasmid p727-IMP, complete sequence	28143-28183	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	27909-27949	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	29318-29358	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	253489-253529	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	104456-104496	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_CP027170	Pseudomonas aeruginosa strain AR_0356 plasmid unnamed2, complete sequence	312300-312340	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	330177-330217	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_KY883660	Pseudomonas putida strain SY153 plasmid pSY153-MDR, complete sequence	29340-29380	0	1.0
NZ_CP039989_1	1.1\|26557\|41\|NZ_CP039989\|CRISPRCasFinder	26557-26597	41	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	26763-26803	1	0.976

1. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

2. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_LT969519 (Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: RW109 plasmid 1) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

3. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

4. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_CP029094 (Pseudomonas aeruginosa strain AR441 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

5. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_CP040126 (Pseudomonas aeruginosa strain PA298 plasmid pBM908, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

6. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

7. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

8. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_CP039991 (Pseudomonas aeruginosa strain T2101 plasmid pBT2101, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

9. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

10. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

11. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

12. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

13. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

14. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to MF344568 (Pseudomonas aeruginosa plasmid p727-IMP, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

15. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

16. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

17. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

18. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

19. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_CP027170 (Pseudomonas aeruginosa strain AR_0356 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

20. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

21. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_KY883660 (Pseudomonas putida strain SY153 plasmid pSY153-MDR, complete sequence) position: , mismatch: 0, identity: 1.0

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgactttcctgcggagcatccg	Protospacer
*****************************************

22. spacer 1.1|26557|41|NZ_CP039989|CRISPRCasFinder matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 1, identity: 0.976

gttcaaattttccggctgatgactttcctgcggagcatccg	CRISPR spacer
gttcaaattttccggctgatgaccttcctgcggagcatccg	Protospacer
***********************.*****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

121154 : 128608

Acinetobacter_phage(33.33%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020191931.1\|121154_121913_+	Trehalose-6-phosphatase	A0A172Q0Q4	Acinetobacter_phage	2.5e-09	26.8
WP_020191932.1\|121905_123000_+\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	2.8e-38	33.4
WP_020191933.1\|122999_123947_+	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_020191934.1\|123946_124675_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_010794508.1\|124677_125271_+	TerD family protein	A0A2I7QY07	Vibrio_phage	1.8e-23	36.8
WP_020191935.1\|125267_126458_+	tellurium resistance protein TerA	NA	NA	NA	NA
WP_010792504.1\|126505_126955_+	tellurite resistance TerB family protein	Q1MVI3	Enterobacteria_phage	1.3e-10	30.2
WP_010792503.1\|126966_128001_+	TerC/Alx family metal homeostasis membrane protein	K7QKE8	Escherichia_phage	3.1e-71	47.2
WP_010792502.1\|128029_128608_+	TerD family protein	A0A2L1IWC0	Streptomyces_phage	5.7e-06	31.0

DBSCAN-SWA_2

155105 : 202971

Salmonella_phage(22.22%)

integrase,transposase

attL 168833:168847|attR 182125:182139

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079991011.1\|155105_156215_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_010794451.1\|158334_159426_+	hypothetical protein	NA	NA	NA	NA
WP_010794452.1\|159457_160663_-	hypothetical protein	J9Q6K3	Salmonella_phage	2.6e-08	38.7
WP_010794453.1\|160796_161831_-	hypothetical protein	NA	NA	NA	NA
WP_058199422.1\|163009_164320_+	hypothetical protein	NA	NA	NA	NA
WP_010794458.1\|164650_165289_+	SOS response-associated peptidase	A0A218MNF5	uncultured_virus	6.7e-32	39.4
WP_021263721.1\|165661_166096_+	hypothetical protein	A0A141E1X8	Streptococcus_phage	1.1e-25	46.6
WP_079993529.1\|166145_166562_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010794461.1\|166655_167012_+	hypothetical protein	NA	NA	NA	NA
WP_057382825.1\|167137_168418_+	site-specific DNA-methyltransferase	NA	NA	NA	NA
WP_034000482.1\|168573_169521_+	hypothetical protein	NA	NA	NA	NA
168833:168847	attL	NA	NA	NA	NA
WP_034000480.1\|169820_170423_+	hypothetical protein	NA	NA	NA	NA
WP_034000478.1\|170505_171288_+	N-6 DNA methylase	A0A2K9V411	Faecalibacterium_phage	3.4e-22	32.3
WP_034000477.1\|171432_172137_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_034000476.1\|172194_172989_+	hypothetical protein	NA	NA	NA	NA
WP_058199483.1\|173551_174820_+	hypothetical protein	NA	NA	NA	NA
WP_023111089.1\|174960_176541_+	alkaline phosphatase family protein	NA	NA	NA	NA
WP_034000470.1\|176547_176844_-	hypothetical protein	NA	NA	NA	NA
WP_058199484.1\|176845_177271_-	hypothetical protein	NA	NA	NA	NA
WP_010794474.1\|177466_177850_+	hypothetical protein	NA	NA	NA	NA
WP_052150492.1\|177948_179004_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_070091420.1\|179291_179795_+	hypothetical protein	NA	NA	NA	NA
WP_021263295.1\|180029_180533_-	hypothetical protein	NA	NA	NA	NA
WP_021018614.1\|180565_180862_-	hypothetical protein	NA	NA	NA	NA
WP_021263294.1\|180887_181733_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_034000467.1\|181811_184400_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
182125:182139	attR	NA	NA	NA	NA
WP_010794530.1\|184703_185666_-	SdiA-regulated domain-containing protein	NA	NA	NA	NA
WP_003090764.1\|185711_186071_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_026014172.1\|186070_186910_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	1.2e-94	63.8
WP_000480968.1\|187018_187855_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_010794532.1\|187854_188658_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000904906.1\|188723_189338_-	recombinase family protein	E5FFF9	Burkholderia_phage	2.3e-37	48.6
WP_001389365.1\|189892_190657_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_023835631.1\|190852_191836_+	dihydropteroate synthase	NA	NA	NA	NA
WP_000214125.1\|192052_193267_+	chloramphenicol/florfenicol efflux MFS transporter FloR2	S4TR35	Salmonella_phage	9.8e-16	23.7
WP_001747812.1\|193294_193477_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_000163574.1\|193473_194100_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_044062376.1\|194203_195379_+	tetracycline efflux MFS transporter Tet(G)	NA	NA	NA	NA
WP_001253717.1\|195399_196191_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_155375935.1\|196282_197665_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_128623110.1\|197557_198670_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_039843394.1\|198705_199461_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_155375934.1\|199785_201315_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001389365.1\|202206_202971_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP039988

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP039988_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039988_1

3188544-3188638

Orphan

Consensus_repeat	Method
GGCGGGGGAGATGGGAAGTGCGATCCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP039988_1

>merge|NZ_CP039988|1|3188544-3188638|CRISPRCasFinder
GGCGGGGGAGATGGGAAGTGCGATCCTGCCAAGGATCCGAACAAGTGTCAGGGCAATGGCTCTGGTGGCGGGGGAGACGGGAAGTGCGATCCTGC

>NZ_CP039988|1|1|3188544-3188638|CRISPRCasFinder
GGCGGGGGAGATGGGAAGTGCGATCCTGC	CAAGGATCCGAACAAGTGTCAGGGCAATGGCTCTGGT
GGCGGGGGAGACGGGAAGTGCGATCCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039988.1\|WP_003131856.1\|3180212_3181232_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381621
NZ_CP039988.1\|WP_003111054.1\|3178786_3179203_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039988.1\|WP_033963047.1\|3192374_3193511_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|282946
NZ_CP039988.1\|WP_031655796.1\|3191886_3192240_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP039988.1\|WP_003131854.1\|3179451_3180180_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039988.1\|WP_010792462.1\|3189157_3189469_+\|DUF2523-domain-containing-protein	unknown	unknown	gnl\|CDD\|371214
NZ_CP039988.1\|WP_003144162.1\|3184706_3185063_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP039988.1\|WP_128623058.1\|3194853_3196230_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|250634
NZ_CP039988.1\|WP_023101277.1\|3189486_3190767_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283385
NZ_CP039988.1\|WP_021264004.1\|3194094_3194403_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369373
NZ_CP039988.1\|WP_003131852.1\|3178242_3178743_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039988.1\|WP_033979203.1\|3193831_3194095_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039988.1\|WP_023101275.1\|3186777_3187122_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375186
NZ_CP039988.1\|WP_019726183.1\|3184267_3184600_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039988.1\|WP_023101274.1\|3185197_3186430_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|177271
NZ_CP039988.1\|WP_003139470.1\|3181243_3181891_+\|DUF3218-domain-containing-protein	unknown	unknown	gnl\|CDD\|371571
NZ_CP039988.1\|WP_043550900.1\|3188732_3189158_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039988.1\|WP_021264002.1\|3193595_3193832_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039988.1\|WP_023099133.1\|3187394_3187625_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039988.1\|WP_021264007.1\|3196231_3196570_+\|DUF2523-domain-containing-protein	unknown	unknown	gnl\|CDD\|133945

Protein	Function_ID	Function_description	E-value
NZ_CP039988.1\|WP_003131856.1\|3180212_3181232_+\|hypothetical-protein	gnl\|CDD\|381621	cd16902, pesticin_lyz, lysozyme-like C-terminal domain of pesticin. Pesticin (Pst) is an anti-bacterial toxin produced by Yersinia pestis that acts through uptake by the target related bacteria and the hydrolysis of peptidoglycan in the periplasm. Pst contains an N-terminal translocation domain, an intermediate receptor binding domain, and a phage-lysozyme like C-terminal activity domain. Bacteriocins such as pesticin are produced by gram-negative bacteria to attack related bacterial stains. Pst is transported to the periplasm via FyuA, an outer-membrane receptor of Y. pestis and E. coli, where it hydrolyzes peptidoglycan via the cleavage of N-acetylmuramic acid and C4 of N-acetylglucosamine. Disruption of the peptidoglycan layer renders the bacteria vulnerable to lysis via osmotic pressure. The pesticin C-terminal domain resembles the lysozyme-like family, which includes soluble lytic transglycosylases (SLT), goose egg-white lysozymes (GEWL), hen egg-white lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.	1.08856e-52
NZ_CP039988.1\|WP_021264007.1\|3196231_3196570_+\|DUF2523-domain-containing-protein	gnl\|CDD\|133945	PHA01081, PHA01081, putative minor coat protein.	1.60473e-09
NZ_CP039988.1\|WP_033963047.1\|3192374_3193511_+\|hypothetical-protein	gnl\|CDD\|282946	pfam05155, Phage_X, Phage X family. This family is the product of Gene X. The function of this protein is unknown.	6.14337e-17
NZ_CP039988.1\|WP_031655796.1\|3191886_3192240_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.27434e-14
NZ_CP039988.1\|WP_021264004.1\|3194094_3194403_+\|hypothetical-protein	gnl\|CDD\|369373	pfam07459, CTX_RstB, CTX phage RstB protein. This family contains a number of RstB proteins approximately 120 residues long, including RstB1 and RstB2, from the Vibrio cholerae phage CTX. Functional analyses indicate that rstB2 is required for integration of the CTXphi phage into the V. cholerae chromosome.	1.08526e-07
NZ_CP039988.1\|WP_003144162.1\|3184706_3185063_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.5114e-15
NZ_CP039988.1\|WP_010792462.1\|3189157_3189469_+\|DUF2523-domain-containing-protein	gnl\|CDD\|371214	pfam10734, DUF2523, Protein of unknown function (DUF2523). This is a family of phage related proteins whose function is uncharacterized.	1.55355e-11
NZ_CP039988.1\|WP_023101275.1\|3186777_3187122_+\|hypothetical-protein	gnl\|CDD\|375186	pfam17426, Putative_G5P, Putative Gamma DNA binding protein G5P. This domain family is found in Gammaproteobacterial proteins. Members of the family are predicted to be G5P DNA binding proteins. Homologous proteins are found in pfam02303.	0.00081908
NZ_CP039988.1\|WP_023101274.1\|3185197_3186430_+\|hypothetical-protein	gnl\|CDD\|177271	PHA00360, II, replication initiation protein.	7.86052e-99
NZ_CP039988.1\|WP_003139470.1\|3181243_3181891_+\|DUF3218-domain-containing-protein	gnl\|CDD\|371571	pfam11508, DUF3218, Protein of unknown function (DUF3218). This family of proteins with unknown function appears to be restricted to Pseudomonas.	8.99779e-151
NZ_CP039988.1\|WP_128623058.1\|3194853_3196230_+\|hypothetical-protein	gnl\|CDD\|250634	pfam01456, Mucin, Mucin-like glycoprotein. This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide.	0.00166033
NZ_CP039988.1\|WP_023101277.1\|3189486_3190767_+\|hypothetical-protein	gnl\|CDD\|283385	pfam05707, Zot, Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.	2.88442e-19

>NZ_CP039988.1|WP_023099133.1|3187394_3187625_+|hypothetical-protein
MKQLKQLFSLGKREAVIGGSLLMASGLSMAAEGDIDTTKALAYIAGGLAAAAAVTGAMFGLVALIGAAKKAMRAGT
>NZ_CP039988.1|WP_023101275.1|3186777_3187122_+|hypothetical-protein
MLALIGLCQGYYPETRTINGQNGQTQITEHYVLVQVEHSTKFGISENKVIQVRISKRHMDGGLNNVWKMEKGKTVSVPVFIQAWASKSGNAGFDYWLSGDGMPLKLQAVQEKAA
>NZ_CP039988.1|WP_023101274.1|3185197_3186430_+|hypothetical-protein
MLDKLHLFVPFRLEHIELLGVEGRADPVHVVDLESLGVPLQGQISRGEGGELQADYLRHTWESLSTGFTPLAFKVFHQSLGKRLMPGVELKASPAKLLQGHNVFGPTCIQKGAEVMFKWLAGSYPDLFAKLDVSATQVYTLDCTYSSRLPDERTALQVIQALTNVSNGHTKSRGDNYQTSAYWGAKESRLKRLKAYLKHTEFQAQLDELKRAGRADLSAARSARVMSDPRLQEWVRYLLRMEATVMHRWLERRGIPSRLVDLIAYQQRLQEEGRCLIQECWQAVTADLFAAFEGIQMRVIDDEKVLAALTERHLKYDRKGKPNDSHARNLFRTYRSLKDYGWQETMDSMSRPTFYRHIKEICEAGLSKAALQKLHEADRANNVVPLLRFVQVDFSAQRPDWYVEPTVEAA
>NZ_CP039988.1|WP_003144162.1|3184706_3185063_-|helix-turn-helix-domain-containing-protein
MSTTNQERAMTIALNLKRFREAKKLTQREVWEAAGISKSSYTSYEAGRSDPTGEIIVRLAKALGVSTDELLLTEQERTVSEDLAPILRRFDALPPDIRNQARIALKGVLFGYEQEALR
>NZ_CP039988.1|WP_019726183.1|3184267_3184600_-|hypothetical-protein
MKRIFLLPLLPLALGAATVDKTQAMAKAIQAKDDQEALEWCKKAAPNDYQWILEQCMQIRADSISQADDMVLQEKLMKRLNEIEQTLTQYPETERRKLALEQLQREAQTP
>NZ_CP039988.1|WP_003139470.1|3181243_3181891_+|DUF3218-domain-containing-protein
MAEINIYQNPGQSLANIYKGFARQCNPGFVFPEAQTIEAWDIPLKLHPEFVPGGDISKADQQYSTLLAQELANGVTIGFRMVNEKERVCNGEILPLLTSMAQNLDRIKARFGSGYLDRFKGSPNVYPTDVGLSPDASGGISQESGLLVSYGVNLRTLAPGTWQAMTLPEDIKTLVGPGVGLRLDAPNFSDVFNTIKSGLRYTTAVALLLAYFAAI
>NZ_CP039988.1|WP_003131856.1|3180212_3181232_+|hypothetical-protein
MDRELDQPLQRNLERLYNYLENPEREEAQRVLLAAEPEPIRITHGIPDLYTDWLSSPSYSAQGGLTGQLTQVISQTAGRPVLVFDDYFKVHEVTIRTVAETGGANSISVSDLQVQLNQQINTFIQDRIDGDKADKVSRLQSNISYLIEMGINIDFTARHELPPGGRGNRATIPTSDPNGESGVTIGYGFDVGQHDESGIQALNIAESTRKKIRPALGLKGANTATFQALAQLIPVLTDEDGLSLFTAKMIKVTDRMKVKFQQWSTLPPAVKTIVTDLYYHYGEYSSFPNFETAISQSDWPAAIRELRNWNGTPNSTDPSDGIARRLNNRADYLQRSLGL
>NZ_CP039988.1|WP_003131854.1|3179451_3180180_+|hypothetical-protein
MKLKSISIFAILALCYNITLCVAEEPKSYFPPGDYYRTGNSGLLTISPLFEGLQKFRIRSTGHNAHACGLNGTIESDHVQVDVRGIGDMSCDVVFKLNDDRITIEKGVASRDCQGFCGAAAGFTGTYWKPSPICEPASIKFNDKQVKKALKNNETEKAYWISRKLITECRDMFEGFGYLSRVFHTAHLSLSAKNHQCKKILEKGSFFRDLKREYLPEKMQNEYDKYSTEFNRLESECEQSMK
>NZ_CP039988.1|WP_003111054.1|3178786_3179203_+|hypothetical-protein
MRIVCLLVLLSLIGGCSHSVTLQERAEQEAIFIQEFRQEFAKRLRYPLFAPGDEIPEADVVVFFRFASSSGRISSCRVQYGEGNVKSRSTLDEVFARRVIATCREPDLPVAPPALLDGGGGFGFKQRVMFRKEVERPR
>NZ_CP039988.1|WP_003131852.1|3178242_3178743_+|hypothetical-protein
MNFNNRNNQILSMIAETQFDAYVLGYIAKARTISIADDSLRIEAEGSAMLAGLISDSCRKRRTQKNPFPYLLLQIAHEALDRTRLNLANVRNISSADALYKELLSQAAWDASVAMDNISEFVEPDQGSVGVIERLVEFAHNSGIAEGQNLALEALAVLGLDVKSHF
>NZ_CP039988.1|WP_043550900.1|3188732_3189158_+|hypothetical-protein
MSGDGDCKVAIQCNGDAIQCAIVRQEKAARCADEEFRTVDDKKIQDLKNTLAGEFSGPEYEPIKATGENTHDLSKLLDTSGRFSKACPVIPDVSFPWFGSTQTVSLSSVSSDLCTYLQWFGYLLVAFAMRAAAEIIARGLN
>NZ_CP039988.1|WP_010792462.1|3189157_3189469_+|DUF2523-domain-containing-protein
MPLLIGVLLRAIGWSLIPLGWKLLRGLGFTAVAFVGVKAVMDQAKDYVFSSLGGVPAQWLQVLGLLQVDVCINILFSAYIARAVLWGMDKSGGKSGMRWTGPK
>NZ_CP039988.1|WP_023101277.1|3189486_3190767_+|hypothetical-protein
MLYLRTGLPGAGKTLNAIREIDIEHQPDPDDPAKRLHKDPDNPDLPPRTIYYYGIPDMKLDRLKSKWVEFDTPEEWYNLPDGSVIVIDEAQRVFGNDGTRARPEKVTRFETHRHQGLDIHLITQHPSLLCTPVRKLVGKHINFIRPYGREKGIFRHEYEFCIDNPERRSNFKQAQEERVTLDKAYFGVYKSSTVHTHKPITPSYMKKIPLIIVLMLIPIGVLVGLVVTAMRQGNEEKEAALARSQATEASAGVLPGAGNAVQAAPRASSGAKSADEFIGDMSPRVPDLVASAPRYDDLNKPRDFPRPVCAASSDPNLIGKAPERRIPLGTYNGRVMVCQCYTQQVTRMHTTFEFCMDVVNNGYFDDTRMPPTYASGNSTRGLITSPSVDPATAIERGRAATSPTPGDAFSTRVTIVPDSSRMPRTL
>NZ_CP039988.1|WP_031655796.1|3191886_3192240_-|helix-turn-helix-transcriptional-regulator
MKTLKERQMTLAANLKKFRAARGLTQQQVYEAAGVSKSSYTGYEAGHGMPSADKALAMAKVLGVTTDELLMDESELLISDDMRPILRRFEALPAEIRNQARIALKGVLFGYEQEALR
>NZ_CP039988.1|WP_033963047.1|3192374_3193511_+|hypothetical-protein
MFIDWLSVSQEHLHDLPVVCDVFTLTVDANTHEVLSTRQPWFKHEGSYSTSIKISVQGRKVRVEGNPSRIDRQDNLFGYVTIEQCIAVYNQLLAEYGLPAFTRCTEIHLRDGASGARPGDWVADGCAIDRIDLTTNVSVGEGNVLAYLRGLSTQRIGHSVGYLYPNGRTVDWTAAGKRKGGVRLQYRKAYDKAFEMGEHLRPRVLRMFGDESPELAYVDQLISYCNQHGVVRQEQELKQEFLSREGLRYWGLFNENRLRDIHDEFLAVDKKLKVTAMDLATISQQLIAEGVVTSTYAANMTAMVAINWSNGQPFDKNNRSLQKHRARLRQIGIDIANPCDTSRFTPVIVRQAREVTKTYDLPIPDWYRRPVGHLRLVA
>NZ_CP039988.1|WP_021264002.1|3193595_3193832_+|hypothetical-protein
MRTISFQGDGLSASQYRSIQLRQQVRAAVNQSVLQQQVAATLQALEQHKEQGGKPERVWTTVSNEKGTPFLGDVFGWS
>NZ_CP039988.1|WP_033979203.1|3193831_3194095_+|hypothetical-protein
MAIEINRQSYLSLRSSLELELLDAGIDSPDLLSRLMRHVLAAESATRAESQTVRRAFVTARRNPLLGAIPQHSQGRTNRPYIRKRKP
>NZ_CP039988.1|WP_021264004.1|3194094_3194403_+|hypothetical-protein
MPFVYLGLTRDAGTSKKTGNAYDISVVHFAVDATQSTRPDRKFALGLEPQNLPISPEAVSQFQRVEPLSSVNFEFEPDPRNMQRNRICGVKPVPKTAAQAAS
>NZ_CP039988.1|WP_128623058.1|3194853_3196230_+|hypothetical-protein
MGIYRRYAAAFLAFTFFLSSEVSYSATRKSVTVPSASVVARGGGSPSVSGPSLKIPGQPGVEYIPRSGGGASGVPIKIIPTIDFSIPRTIKGSVSSLKGGIAGIAATAAMSMALDSIGGFIDENGKPVKKVSDAPNGAVAGTYYFRNGISFGPNKLEPRYGLTREQACEYKITKGNDCLIELNGYSAYTVISVLHCDPGVWFNLATGKCDSLWKPGEHIESLTDPDYDDITDSLSGVVDPNWLKDLLTATCEGSLNPAACYDQMSETTHLSGPSSVNGPKTSTTTTTTNPDGTTSTTTKDTQTKYEIKYGDNYIDYTETTTTTTTKDGDKTEETTTTDTDDVTAEIPPEEKEEEGGSFEDSEFPEVKPFYEQKYEDGLEGVWRDKRAEFEDTEFMKFLQGFIPSFSGRCPAFGLDMNIASWANYGYQQFGSICYVLDFVKAILMVSALFLCRALIFGG
>NZ_CP039988.1|WP_021264007.1|3196231_3196570_+|DUF2523-domain-containing-protein
MAGVFKFFTALLAKIVGFAKWLLLVFAQIFKDAWNMVTDVVCWVFEQTLSIAASALDAIAIPFNPQTYYAMIPAEAANMLGYVGVPQAITLIVGALVVRFLLQTIPFVRWGS

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Crispr_ID: NZ_CP039988_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039988_2

5991555-5991646

Orphan

Consensus_repeat	Method
CCGACAACGGCAGCGAGCAGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP039988_2

>merge|NZ_CP039988|2|5991555-5991646|CRISPRCasFinder
CCGACAACGGCAGCGAGCAGACCATCGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGCCTGGCCGACAACGGCAGCGAACAGACC

>NZ_CP039988|2|2|5991555-5991646|CRISPRCasFinder
CCGACAACGGCAGCGAGCAGACC	ATCGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGCCTGG
CCGACAACGGCAGCGAACAGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039988.1\|WP_003095479.1\|5985295_5985712_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183165
NZ_CP039988.1\|WP_003110939.1\|5982031_5982778_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039988.1\|WP_073656122.1\|5994671_5996063_+\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_CP039988.1\|WP_003135457.1\|6000816_6001320_+\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NZ_CP039988.1\|WP_128622771.1\|5983855_5985121_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NZ_CP039988.1\|WP_003121125.1\|5982784_5983648_-\|oxaloacetate-decarboxylase	unknown	unknown	gnl\|CDD\|225311
NZ_CP039988.1\|WP_003095483.1\|5985866_5986406_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP039988.1\|WP_003095492.1\|5986882_5987290_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377850
NZ_CP039988.1\|WP_003112308.1\|5991810_5992578_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239026
NZ_CP039988.1\|WP_003095524.1\|5999957_6000587_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236881
NZ_CP039988.1\|WP_003095496.1\|5987436_5988249_+\|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR	unknown	unknown	gnl\|CDD\|226231
NZ_CP039988.1\|WP_003110936.1\|5988250_5990320_-\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|225529
NZ_CP039988.1\|WP_003095488.1\|5986494_5986839_+\|osmotically-inducible-lipoprotein-OsmE	unknown	unknown	gnl\|CDD\|183058
NZ_CP039988.1\|WP_003095519.1\|5996053_5997370_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_CP039988.1\|WP_009314324.1\|5992574_5993189_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NZ_CP039988.1\|WP_019486057.1\|5994003_5994693_+\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_CP039988.1\|WP_096248787.1\|5990615_5991149_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104
NZ_CP039988.1\|WP_003116117.1\|5997589_5998678_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|225779
NZ_CP039988.1\|WP_003095513.1\|5993242_5993866_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039988.1\|WP_003123551.1\|5998698_5999799_-\|ferredoxin-reductase	unknown	unknown	gnl\|CDD\|99812

Protein	Function_ID	Function_description	E-value
NZ_CP039988.1\|WP_003095479.1\|5985295_5985712_-\|hypothetical-protein	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	1.76735e-18
NZ_CP039988.1\|WP_003135457.1\|6000816_6001320_+\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	6.15479e-59
NZ_CP039988.1\|WP_073656122.1\|5994671_5996063_+\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	0
NZ_CP039988.1\|WP_128622771.1\|5983855_5985121_+\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NZ_CP039988.1\|WP_003121125.1\|5982784_5983648_-\|oxaloacetate-decarboxylase	gnl\|CDD\|225311	COG2513, PrpB, PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism].	1.3777e-87
NZ_CP039988.1\|WP_003095483.1\|5985866_5986406_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	5.52525e-29
NZ_CP039988.1\|WP_003095492.1\|5986882_5987290_-\|hypothetical-protein	gnl\|CDD\|377850	pfam07498, Rho_N, Rho termination factor, N-terminal domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).	0.000208897
NZ_CP039988.1\|WP_003112308.1\|5991810_5992578_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	5.57634e-96
NZ_CP039988.1\|WP_003095524.1\|5999957_6000587_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	7.9449e-41
NZ_CP039988.1\|WP_003095496.1\|5987436_5988249_+\|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.65802e-48
NZ_CP039988.1\|WP_003110936.1\|5988250_5990320_-\|AsmA-family-protein	gnl\|CDD\|225529	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	0
NZ_CP039988.1\|WP_003095488.1\|5986494_5986839_+\|osmotically-inducible-lipoprotein-OsmE	gnl\|CDD\|183058	PRK11251, PRK11251, osmotically-inducible lipoprotein OsmE.	1.90142e-51
NZ_CP039988.1\|WP_003095519.1\|5996053_5997370_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.70918e-108
NZ_CP039988.1\|WP_009314324.1\|5992574_5993189_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	3.09037e-70
NZ_CP039988.1\|WP_019486057.1\|5994003_5994693_+\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	3.37288e-112
NZ_CP039988.1\|WP_096248787.1\|5990615_5991149_+\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	1.49054e-49
NZ_CP039988.1\|WP_003116117.1\|5997589_5998678_-\|fatty-acid-desaturase	gnl\|CDD\|225779	COG3239, DesA, Fatty acid desaturase [Lipid metabolism].	6.80946e-66
NZ_CP039988.1\|WP_003123551.1\|5998698_5999799_-\|ferredoxin-reductase	gnl\|CDD\|99812	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	3.98791e-87

>NZ_CP039988.1|WP_096248787.1|5990615_5991149_+|bacterioferritin
MTTVQLTDVQTLRDRARKNIQEGAVTEGYSADRQTVLRLLNEALATELVCFLRYKRHYFMATGLKASIAAAEFLEHANQEIQHADQLAERIMQLGGEPDFNPRGLEERSHAEYVEGKTLKDMVTENLIAERIAIDSYREIITYLGNDDPTTRRIFEEILAQEEEHADDMADILDDLA
>NZ_CP039988.1|WP_003110936.1|5988250_5990320_-|AsmA-family-protein
MTRGRKILTWSLASLVLLLAALVVFIATFDWNLIKPTLNEKVSAALNRPFAINGNLAVAWRREEGEEGWRAWIPWPRFSAEDITLGNPEWTAGKTKASEFASLERIEFRLAPLPLLWQTIRIPQIKLTQPRADLLRLADGRANWDFDLPASDSDEPSAWQLDIREIGFDKGSVSLDDQRLKTRLEVLVDPLGKPVPFGQLAGKALATGDAANAQDYVFGWKVKGTYKGQALAGSGKVGGMLALQDASKPFPLQAEVSAGSTRAAVVGTLTDPLNLGALDLRLKLSGTSMANLYPLTGITLPDTPAYSTDGHLLARLKEEGGALFRYENFNGKVGASDLHGSLTFVARQPRPKLSGKLTSEQLRFADLGPLIGADSNAEKQKRGQTSRQPGDKVLPVEEFRTERWRDMDADVEFTGKRIVHSDQLPISDLYTHLVLNDGLLRLEPLRFGVAGGKLESDIRLDGGKQPMQSRVKMSARGFKLKQLFPGFAPMQTSFGELNGDASLSGSGNSVAKILGGADGELKMLINDGAISKGLTEIAGLNVGNYLVTKLFGDDEVKINCAAADFGLQKGLMTSRLFVFDTENALVNVDGTVNFANEKLDLDVTPHSKGLRIFSLRSPLYVRGTFAKPDAGVHAGPLVARGAGMIALGVAVGPAASLLALVAPSKSDDNQCTALLQRMRQPAKAPAGKR
>NZ_CP039988.1|WP_003095496.1|5987436_5988249_+|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR
MLTIGQLARIFEISTKTLRHYDAIGLFVPARTGSDNGYRYYQPEQIEQLSRILALRRLDVPLEAIDRLKRDGALDDPQRLRHFLQRHQHTLREEISARQRLLAELDRTLATLAHWRIRNMHARIVERPAFSVVGMEYFGSAPGDTIGQLWERFIPREHEIAGKHDPEVSYGICAQQPNGEFHYVAGFEVQEGWPVPEGMVRFQVPAQKYAVFTHKGTAPQIAESFQAIYSHLLAERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIPIY
>NZ_CP039988.1|WP_003095492.1|5986882_5987290_-|hypothetical-protein
MPRGDKSKYSDKQQRKAEHIEESYKAKGVSESEAEARAWATVNKQSGGGERKGGSGRAKSETAKRADRKDSAHRAAQARSGRPANRGSASRGKRQGSTSVSEMTREELMQLARKRDIRGRSTMRKAELIEALSRA
>NZ_CP039988.1|WP_003095488.1|5986494_5986839_+|osmotically-inducible-lipoprotein-OsmE
MYKQSLAALFVMATLAGCASTKVQNPVNYITFRNEPLVKDVEKGMSQQEVLRIGGTPSGTQKRLMKPGSCNSYILNKDGQQQPFYVSFDGSGKVDGSGFLSCSELDRHERDARP
>NZ_CP039988.1|WP_003095483.1|5985866_5986406_+|MOSC-domain-containing-protein
MQQVIAVSLCATHAFSKQVRPAIRLLKGLGVEGDAHHGVTVKHRSRVRQDPTQPNLRQVHLIHEELHDELRASGFAIGPGTMGENITTRGVDLLGLPTGTRLRLGESALVELTGLRNPCSQLDNYQPGLTAAVLGRDEQGNLIRKAGVMAIVLEDGEVRPGDAIDIQLPPLPHRALEKV
>NZ_CP039988.1|WP_003095479.1|5985295_5985712_-|hypothetical-protein
MNILRIPMFVLAMAVSAHGFAATAQQEKMTACNAEATTKALKGDERKAFMSGCLKAGAPAGGKATAQQEKMKSCNADASAKSLKGDERKAFMSSCLKAGGSAKAATQQEKMKTCNADATAKALKGDERKAFMSTCLKK
>NZ_CP039988.1|WP_128622771.1|5983855_5985121_+|Hsp70-family-protein
MNPSTAARALGIDFGTSNSTVGWWRPEVEPLIELEDGKITLPSVVFFNVEERRPVYGRQALGEYLEGSEGRLMRSLKSLLGSKLLKSETTVLGSALPFKDLLGLFIGQLKARGEAAAGQAFDAVVLGRPVFFVDDDPEADREAQDTLVQVANKLGFKEVSFQYEPIAAAFDYERGIQREELVLIVDIGGGTSDFSLVRLAPERRNLAERQDDILATGGVHIGGTDFDKQLSLEGVMPLFGYGSRMKSDAFMPTSYHLNLATWHTINAVYAQKSQLALKNMRYDIVDSTGIDRLFRLIEERAGHWLAMQVEDSKIRLTETERLHLSLERIEAGLGVELTRGLFENAVDGLLERVRNSVAQLLASAGVDPDRVDTVFFTGGSSGIPALRRSVSAMLPNARHVEGNLFGSIGSGLAIEAKKRYG
>NZ_CP039988.1|WP_003121125.1|5982784_5983648_-|oxaloacetate-decarboxylase
MHRASHHELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSKKYTFPEEYQAWARDYMEVKE
>NZ_CP039988.1|WP_003110939.1|5982031_5982778_+|hypothetical-protein
MKIDSASSSPSLAQRQLMTRTPDQDFQRDFQAAYARLAVAAEGSAEQAGALADTLGATQLEYSRVRGVSLEDQLRFAHVLNRACENDAQLDARGFLARLGADDLQALQRNMGLAEPIRVEALSEEGARNLLLPEGYSVDLDGDGITEVGAAKIRHFPPRDAPQAFLDQWLALTAGMDGAAYSNARDGLQWAFDIRAMAGQPLATDQLASYRTAVDDYLGMLAEHRHALVPGQYERDLPLYQALRQRLA
>NZ_CP039988.1|WP_003112308.1|5991810_5992578_-|molybdopterin-dependent-oxidoreductase
MKGPEKKRAKIAIDPSSERQMVDLQRRLLLRGGLSLGALAMLSGCRLQDGDSVDKVLWAMSRWNDRVQAWLFSRTRLAPTFDPSQVASPFPFNAFYPAYNVPEIDLPEYRLQVSGRVRDKRPWSLEQLRRLPQASQVTQLICIEGWSAIGQWSGVPLRTFLELVGADTSAKYVGFKCADRYYSSLDMPSALHPQTLLALEMSGQALPEENGYPLRLRIPTKLGFKNAKHVVEIFVSNSNPGGYWEDQGYNWFSGV
>NZ_CP039988.1|WP_009314324.1|5992574_5993189_-|cytochrome-b/b6-domain-containing-protein
MNRALHAWPVRLCHWLNAYAMACLIGSGWGIYNASPLLDFRFPAWATLGGWLGGSIAWHLAAMWLLLGNGLCYLAYGLSSGHFRRDFLPLSAAGVWRDLRLALGLRLVHEPGRYNAVQRLLYWLVLGLGALLVLSGLAIWKPVQLHGLTVLFGGFQGARWVHFLAMAGVVGFVVVHLLLVLLVPRTLVPMIIGREWRRGRRSEG
>NZ_CP039988.1|WP_003095513.1|5993242_5993866_-|hypothetical-protein
MLRLKASPALLFGLLLASAASFAAQPPAGMLQPLRGTIQQAADDHLQLKARNGQQLTVRLTDKTAIRAVSLAKPEDIQPDSFIGTAAVPQPDGTLKALEVHVFAPSLRGSGEGHRPWENADGSASTMTNGTVGNLVVSQGRRMTVKYGDGEKTVVVPDDVPIVSLEPGERSLLKPGAKVVLFPQKGADGSLTALAISVGKDGVTPPM
>NZ_CP039988.1|WP_019486057.1|5994003_5994693_+|heavy-metal-response-regulator-transcription-factor
MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLPGLDGWQIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVVREAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEIWDMNFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEERPCPPAAP
>NZ_CP039988.1|WP_073656122.1|5994671_5996063_+|heavy-metal-sensor-histidine-kinase
MPARRSLTLYAALLFAAVAALVVSAVGFYLYRSVEEAMLRRSDVMVAGRVEHFRNLLRDNLTLAELKARPRLFENMLGNEQDILLLGQPGEAPIVAVNPRHERLPSLRVVAAGQALNPSVVHAALTHDGVPMRVLAAEVLVGGREPLQITAAHLLLGETRMLAQYRDRVIAAVLLAFLGTALLGWLVLRHGLRPLRTLAAKAAEIHPTSLDTRLDVAAAPAELQQVAQSFNAMLERLDDGYQRLQQFSADLAHEIRTPIGSLMGHGQVALRQPRSNEEYQALIASNQEELERIARMVESILFLARADDVRAAVERSRLDLGEELRRQAEYFEGLAEERGLSLDVQISGQLRADPQLFRRALSNLLANAIRYASAESLIEVRGLRRSGEFLLSVENACDRLPAEPLSRLFDRFYRGDAARSDAQSSGLGLAIVQAIMRLHGGRAEASAPAPGRIRFELAFPAQD
>NZ_CP039988.1|WP_003095519.1|5996053_5997370_-|MFS-transporter
MFSPLVTFPALYTATLLMLAGSGLFTTYIGLRLTQEGAGDLWVGGLMASYYFGLVCGGKFGHKLIASFGHIRSYVACAGIATVTVLLHALVDQLEVWLLLRFITGAVMMNQYMVIESWLNEQAESHQRGKVFAGYMVAVDLGLVLGQGLLALSPTLDYKPLLLVAICFASCLIPLAMTRRVHPAKLVAAPLEVRFFWQRVPQALGTIFIAGLMVGAFYGLAPVYANRNGLDASQSSFFVGMCIVAGFCAQWPLGWLSDRLDRSWLIRGNAVLLCLASIPMWGLVTLPYWLLLANGFVTGMLLFTLYPLAVALANDHVEQPRRVALSAMLLTTYGVGACIGPLVAGALMRHFGPGLFYMLVSGYAVLLVFWVQPKRVTGEHRVDEAPLQHVAMPDTVSPMAATLDPRVEEVPEELVVEAPANIGRSDGEPDAGEKPAQS
>NZ_CP039988.1|WP_003116117.1|5997589_5998678_-|fatty-acid-desaturase
MRDDRELTPEQLAAFGAELDALRQRTLADLGADDARYIRRVRAAVRVCCWSGRALLMFGWLPPTWLLGSLLLGLGKILENMELGHNVMHGQYDWMNDPEFAGRAYEWDIAGPSDFWRHTHNHIHHTYTNVLGKDDDVGYGVVRLFPEQRWKPFYRWQPLWVTLQALLFQYAVAIQHLRLDKYAKGRLDKAELMPLLRRLRAKLGRQWTKDYLLFPLLGLFAGGFGAVFVGNLLANVLRNLWTFTVIFCGHFTEKAVVFPPSVLEGETRGHWYLRQLRGSSNLEGGPLFHILTGNLSHQIEHHLYPDLPARRYAALSREVREIARRYGQTYNSGRLGRQFLTVLRRIWVYRLPPREPLPAGRS
>NZ_CP039988.1|WP_003123551.1|5998698_5999799_-|ferredoxin-reductase
MALLPLALLTPLLAPLRRLAARGWLREADVDGLLRHAHPLASLNRHYARVEARYWVADDMLALALRTAPGWPPARPGQHIQLLAERDGVRVGRSYSLTRVVGERLEIAVKRHPDGLLSPWLCEHLAVGQRVELQPAQGDLRWPMQAEAVCLLAAGSGLTPLLGLLREALENGYRGPVLWLHYVRHPGQRAWLGELEALAARHPNLELRWSLTRGARADGCLEGHFQPRHLDGWAADLARSQALACGPAAFVEAVGEQLGARFAGLQTESFSVPRWRSGEAPREVRLRFARSQREVSGDSAASLLEQAEAHGLRPAHGCRQGICASCTCVLLSGCVRDLRSGALCSEPGQPIRLCVSAAHGDLALDL
>NZ_CP039988.1|WP_003095524.1|5999957_6000587_+|TetR-family-transcriptional-regulator
MSSPRAEQKQQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAEVDETFRATLRAVRRNEFELGGLIDASVRIFLDAVGANRSQFLFLAREQYGGSLPIRQAIASLRQRITDDLAADLALLNKMPHLDGAALDVFADLVVKTVFATLPELIDPPAADLPPHLMPAAKITHQLRFIMIGGKHWHGLPD
>NZ_CP039988.1|WP_003135457.1|6000816_6001320_+|urease-accessory-protein-UreE
MLVIHQRLPARSPRWDEELHLTYEARSKSRLRCFAASGEEVGLFLERGQPPLADGDCLEARDGRLVRVVARPERLLHVTCASPLELTRAAYHLGNRHVALQVGDGWLRLLDDYVLKAMLEQLGATVEAIEAPFQPEHGAYGGGHHHSHHGEAEFNYAPRLHQFGVRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

63098 : 118173

Shigella_phage(16.67%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096249031.1\|63098_63758_+\|transposase	transposase	NA	NA	NA	NA
WP_101476525.1\|63807_64969_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	5.6e-85	53.6
WP_096248869.1\|65390_65984_+	hypothetical protein	NA	NA	NA	NA
WP_003083536.1\|66471_66867_+	hypothetical protein	NA	NA	NA	NA
WP_077563739.1\|67131_68541_-	MgtC/SapB family protein	NA	NA	NA	NA
WP_003111705.1\|68704_70078_+	T3SS effector bifunctional cytotoxin exoenzyme T	NA	NA	NA	NA
WP_003083559.1\|70573_71260_+	curli production assembly protein CsgG	NA	NA	NA	NA
WP_003083569.1\|71290_71644_+	DUF4810 domain-containing protein	NA	NA	NA	NA
WP_003083573.1\|71640_72306_+	DUF799 domain-containing protein	NA	NA	NA	NA
WP_003083575.1\|72320_72704_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_033984507.1\|72985_74647_-	hypothetical protein	NA	NA	NA	NA
WP_003083582.1\|75258_75399_+	hypothetical protein	NA	NA	NA	NA
WP_019485247.1\|76219_78052_+	asparagine synthase (glutamine-hydrolyzing)	A0A2K9R7N5	Dishui_lake_phycodnavirus	2.7e-17	28.3
WP_096248870.1\|78104_78533_-	cupin domain-containing protein	NA	NA	NA	NA
WP_003111524.1\|78972_79443_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_009314898.1\|79459_80008_-	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	4.7e-34	41.6
WP_003083593.1\|80046_80553_-	DUF1993 family protein	NA	NA	NA	NA
WP_128623071.1\|80618_81539_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003083599.1\|81646_82534_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_009314899.1\|82596_83301_+	DsbA family protein	NA	NA	NA	NA
WP_003118563.1\|83384_83840_+	OsmC family protein	NA	NA	NA	NA
WP_003083610.1\|83950_84184_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_003083612.1\|84195_84633_-	hypothetical protein	NA	NA	NA	NA
WP_003083614.1\|84689_85106_-	hypothetical protein	NA	NA	NA	NA
WP_003136953.1\|85197_86325_+	aminopeptidase	NA	NA	NA	NA
WP_003114660.1\|86332_87316_-	hypothetical protein	NA	NA	NA	NA
WP_003118497.1\|87348_88014_-	HAD family hydrolase	NA	NA	NA	NA
WP_003083618.1\|88006_88549_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_016852309.1\|88626_90672_+	oligopeptidase A	A0A1V0SD92	Indivirus	7.8e-34	21.3
WP_003083624.1\|90668_90944_+	YheV family putative metal-binding protein	NA	NA	NA	NA
WP_096248871.1\|91032_92091_+	PA0069 family radical SAM protein	NA	NA	NA	NA
WP_003083630.1\|92321_93236_-	hypothetical protein	NA	NA	NA	NA
WP_128623072.1\|93297_95010_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA
WP_128623073.1\|95002_96202_-	ABC transporter permease	NA	NA	NA	NA
WP_003111510.1\|96201_96921_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.3e-19	36.8
WP_023518242.1\|96917_100016_-	protein kinase	M1PCM5	Moumouvirus	2.5e-23	27.8
WP_003083639.1\|100023_100752_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_003083642.1\|100761_101442_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_009314904.1\|101438_104972_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_014603461.1\|104968_106318_-	DotU family type VI secretion system protein	NA	NA	NA	NA
WP_096248872.1\|106324_107659_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_003083660.1\|107674_108139_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_023094294.1\|108183_109701_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_073665599.1\|110068_111103_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_003083666.1\|111191_111710_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003104973.1\|111722_113219_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003083670.1\|113294_113783_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_003119488.1\|113950_114796_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003111625.1\|114797_115307_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003083676.1\|115303_117163_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003083679.1\|117126_118173_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_2

636080 : 706305

uncultured_Caudovirales_phage(21.88%)

tRNA,plate,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_101476525.1\|636080_637242_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	5.6e-85	53.6
WP_034001189.1\|637479_637797_+	hypothetical protein	NA	NA	NA	NA
WP_034075339.1\|638220_640173_-	DUF3732 domain-containing protein	NA	NA	NA	NA
WP_033969993.1\|640169_640667_-	hypothetical protein	NA	NA	NA	NA
WP_034075340.1\|640666_641872_-	hypothetical protein	NA	NA	NA	NA
WP_034075338.1\|642141_642912_-	nuclease	A0A2R2ZH57	Clostridioides_phage	6.2e-24	34.5
WP_034075337.1\|643083_644205_-	Fic family protein	A0A1V0E025	Clostridioides_phage	5.3e-08	25.8
WP_023874863.1\|644466_644628_-	hypothetical protein	NA	NA	NA	NA
WP_034075336.1\|644849_648587_-	bifunctional diguanylate cyclase/phosphodiesterase	A0A127AWB9	Bacillus_phage	4.8e-13	35.4
WP_003085035.1\|648693_650547_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.2e-36	33.8
WP_003085039.1\|650626_652621_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.8e-73	40.7
WP_003085042.1\|652703_653153_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	5.0e-18	38.8
WP_003085057.1\|653222_653438_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_003109020.1\|653638_654664_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.7e-109	58.1
WP_003085061.1\|654742_655312_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003099587.1\|655395_655749_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_023126993.1\|655739_656282_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003099584.1\|656254_657487_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	2.6e-77	43.1
WP_023119538.1\|657530_658037_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003099581.1\|658131_659685_-	SpoVR family protein	NA	NA	NA	NA
WP_003099579.1\|659681_660953_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|661053_662976_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003099577.1\|663254_663587_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003113213.1\|663630_664482_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
WP_003085085.1\|664481_664862_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_096248927.1\|664898_665705_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003085089.1\|665820_666807_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003109024.1\|666803_668096_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_003085092.1\|668076_670878_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_023095148.1\|671004_672021_+	phosphotransferase	NA	NA	NA	NA
WP_003117959.1\|672017_672692_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_003099547.1\|672693_673452_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_003137371.1\|673452_674514_-	DUF3530 family protein	NA	NA	NA	NA
WP_003459408.1\|674665_677059_+	PAS domain S-box protein	NA	NA	NA	NA
WP_003085103.1\|677104_677737_+	response regulator transcription factor	NA	NA	NA	NA
WP_003085106.1\|677865_678900_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_003085109.1\|679133_680243_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003109043.1\|680298_681345_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014604087.1\|681459_682707_+	ABC transporter permease	NA	NA	NA	NA
WP_003085119.1\|682812_683643_+	ABC transporter permease	NA	NA	NA	NA
WP_003085122.1\|683766_684441_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003085124.1\|684440_685259_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_003085126.1\|685331_686810_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003109046.1\|686996_687311_-	transcription regulatory protein PrtN	NA	NA	NA	NA
WP_003109047.1\|687410_688181_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	7.9e-72	59.0
WP_003085132.1\|688638_688839_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_096248926.1\|688886_689246_+	hypothetical protein	NA	NA	NA	NA
WP_003118908.1\|689609_690059_+	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_023435435.1\|690080_690596_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	8.3e-33	43.4
WP_003085141.1\|690592_691150_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	4.6e-45	71.1
WP_003113199.1\|691302_691629_+	bacteriophage protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.4e-30	60.2
WP_003085151.1\|691625_692513_+	bacteriophage protein	S4TNY7	Salmonella_phage	5.3e-88	59.8
WP_003137385.1\|692505_693039_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	5.2e-62	64.6
WP_015502281.1\|693040_695149_+\|tail	tail fiber	Q9ZXK6	Pseudomonas_virus	6.5e-225	52.3
WP_003085172.1\|695157_695598_+	hypothetical protein	NA	NA	NA	NA
WP_003109051.1\|695640_696801_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	2.7e-188	83.4
WP_003085175.1\|696813_697317_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
WP_003085178.1\|697331_697676_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_096248925.1\|697845_700083_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_023112718.1\|700092_700965_+	hypothetical protein	A0A2H4J875	uncultured_Caudovirales_phage	1.3e-75	52.1
WP_003101635.1\|700939_701146_+	hypothetical protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_023095155.1\|701203_702193_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	2.2e-106	55.8
WP_003161924.1\|702225_702855_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	5.5e-87	78.5
WP_003121852.1\|702851_703214_+	hypothetical protein	H2BDA0	Pseudomonas_phage	4.2e-15	47.9
WP_003118919.1\|703210_703468_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_024928380.1\|703815_704421_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.6e-75	66.3
WP_003085203.1\|704422_705472_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_096248924.1\|705468_706305_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	6.2e-70	56.5

DBSCAN-SWA_3

1450070 : 1459099

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003098558.1\|1450070_1450706_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3
WP_017148388.1\|1450751_1451645_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|1451749_1452754_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003092272.1\|1453180_1453504_-	Ferredoxin 1	NA	NA	NA	NA
WP_003122151.1\|1453570_1456138_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	2.4e-24	22.1
WP_003092265.1\|1456263_1457271_-	TolB family protein	NA	NA	NA	NA
WP_003092262.1\|1457418_1457925_+	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_058176080.1\|1458058_1459099_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	3.9e-114	59.5

DBSCAN-SWA_4

2336949 : 2365975

Pseudomonas_phage(66.67%)

tRNA,holin,terminase,transposase,integrase,tail

attL 2337236:2337250|attR 2340581:2340595

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016562059.1\|2336949_2337930_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
2337236:2337250	attL	NA	NA	NA	NA
WP_031627948.1\|2338112_2339228_+\|integrase	site-specific integrase	A0A2K8I325	Pseudomonas_phage	2.1e-118	60.3
WP_003130859.1\|2339201_2339477_-	hypothetical protein	A0A2K8HN48	Pseudomonas_phage	3.4e-25	65.5
WP_003130860.1\|2339580_2339793_-	hypothetical protein	NA	NA	NA	NA
WP_101476525.1\|2339932_2341094_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	5.6e-85	53.6
2340581:2340595	attR	NA	NA	NA	NA
WP_003130870.1\|2341240_2341600_-	DUF4440 domain-containing protein	NA	NA	NA	NA
WP_153562506.1\|2341969_2342290_+	hypothetical protein	NA	NA	NA	NA
WP_031637682.1\|2342317_2342968_-	hypothetical protein	A0A0U4J8W4	Pseudomonas_phage	1.6e-121	97.2
WP_023088260.1\|2343101_2343674_-	S24 family peptidase	H2BD63	Pseudomonas_phage	1.9e-86	91.7
WP_003451709.1\|2344050_2344269_+	helix-turn-helix domain-containing protein	A0A2D1GND2	Pseudomonas_phage	2.9e-19	64.7
WP_033987544.1\|2344300_2344873_+	hypothetical protein	H2BD67	Pseudomonas_phage	3.5e-101	98.9
WP_096248995.1\|2344875_2345760_+	hypothetical protein	NA	NA	NA	NA
WP_003103373.1\|2345809_2346418_+	hypothetical protein	A0A2H4J6S4	uncultured_Caudovirales_phage	3.4e-41	43.9
WP_023083722.1\|2346410_2346854_+	RusA family crossover junction endodeoxyribonuclease	H2BD71	Pseudomonas_phage	1.4e-52	69.2
WP_096248996.1\|2346882_2347752_+	hypothetical protein	J7HXH6	Pseudomonas_phage	1.6e-140	84.4
WP_034008242.1\|2347811_2348120_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_023101093.1\|2348094_2348370_-	type II toxin-antitoxin system prevent-host-death family antitoxin	A0A0A1IU40	Pseudomonas_phage	2.7e-06	64.9
WP_031685794.1\|2348670_2348970_+	hypothetical protein	NA	NA	NA	NA
WP_003103377.1\|2349077_2349458_+	hypothetical protein	H2BDJ3	Pseudomonas_virus	4.8e-38	67.5
WP_003103378.1\|2349432_2349780_+\|holin	phage holin family protein	Q9MC42	Pseudomonas_phage	1.9e-25	61.3
WP_003103379.1\|2349846_2350302_+	hypothetical protein	NA	NA	NA	NA
WP_023101096.1\|2350359_2350956_+\|terminase	terminase small subunit	H2BD75	Pseudomonas_phage	3.3e-49	61.9
WP_023115880.1\|2350942_2352238_+	hypothetical protein	A0A1B1P9C9	Acinetobacter_phage	1.4e-145	58.5
WP_033990710.1\|2352240_2353596_+	DUF4055 domain-containing protein	A0A0H5AWC7	Pseudomonas_phage	3.7e-96	45.8
WP_023115882.1\|2353592_2354672_+	hypothetical protein	A0A0S2SY77	Pseudomonas_phage	3.8e-197	97.7
WP_034075297.1\|2354654_2355170_-	hypothetical protein	NA	NA	NA	NA
WP_033990719.1\|2355322_2356066_+	hypothetical protein	A0A0H5AWD1	Pseudomonas_phage	8.4e-87	74.5
WP_003103391.1\|2356075_2357047_+	hypothetical protein	A0A0M3LQL5	Mannheimia_phage	9.3e-110	64.7
WP_023088300.1\|2357088_2357574_+	hypothetical protein	NA	NA	NA	NA
WP_033990709.1\|2357557_2358022_+	hypothetical protein	H9EB35	Vibrio_phage	4.0e-10	36.4
WP_034075295.1\|2358021_2358411_+	hypothetical protein	A0A2H4JAS3	uncultured_Caudovirales_phage	2.1e-33	55.0
WP_023087397.1\|2358414_2359089_+	hypothetical protein	A0A0S2SY81	Pseudomonas_phage	1.0e-115	96.4
WP_003451667.1\|2359085_2359496_+	hypothetical protein	A0A1B0VMI0	Pseudomonas_phage	2.5e-24	43.4
WP_012075337.1\|2359563_2360217_+\|tail	phage tail protein	A0A2H4IZV5	uncultured_Caudovirales_phage	7.7e-60	52.8
WP_023115887.1\|2360226_2360607_+	hypothetical protein	A0A1B0VMH4	Pseudomonas_phage	4.8e-22	44.9
WP_049246843.1\|2360669_2360933_+	phage protein	A0A2R3UAE2	Siphoviridae_environmental_samples	2.7e-16	46.0
WP_034075292.1\|2360929_2364121_+\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	1.1e-156	40.5
WP_012075340.1\|2364126_2364465_+\|tail	phage tail protein	A0A0S2SYI2	Pseudomonas_phage	3.1e-60	99.1
WP_033946795.1\|2364461_2365211_+\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	3.9e-148	99.6
WP_003160548.1\|2365213_2365975_+	C40 family peptidase	A0A0S2SY75	Pseudomonas_phage	1.4e-140	93.9

DBSCAN-SWA_5

2604829 : 2658748

Pseudomonas_phage(71.7%)

tRNA,integrase,terminase

attL 2595838:2595854|attR 2625457:2625473

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2595838:2595854	attL	NA	NA	NA	NA
WP_003097631.1\|2604829_2606110_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4
WP_003108773.1\|2606111_2607509_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003097628.1\|2607513_2608488_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003108776.1\|2608575_2609559_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.3e-142	74.3
WP_003090393.1\|2609555_2609891_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.3e-38	69.4
WP_003090391.1\|2609887_2610193_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003090389.1\|2610192_2610552_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003090387.1\|2610548_2610944_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
WP_003090386.1\|2611054_2611723_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1
WP_058151720.1\|2612058_2613126_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.1e-135	68.7
WP_003116724.1\|2613127_2613364_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	3.8e-17	53.2
WP_058158460.1\|2613442_2615758_-	hypothetical protein	A0A0U1UNM2	Pseudomonas_phage	1.2e-152	47.1
WP_023131627.1\|2615855_2616362_-	hypothetical protein	L7TI83	Pseudomonas_virus	3.4e-87	95.8
WP_023131628.1\|2616358_2616847_-	DUF1643 domain-containing protein	A0A0U1W068	Pseudomonas_phage	2.4e-90	93.8
WP_016852961.1\|2616843_2617521_-	hypothetical protein	A0A0U1SZL2	Pseudomonas_phage	1.8e-64	59.0
WP_128623046.1\|2617517_2617961_-	hypothetical protein	A0A2K8HVL6	Pseudomonas_phage	2.0e-59	80.3
WP_128623045.1\|2617957_2619736_-	DNA cytosine methyltransferase	Q9ZXI4	Pseudomonas_virus	6.8e-300	97.6
WP_128623044.1\|2619732_2622363_-	DNA methylase N-4	H2BD45	Pseudomonas_phage	0.0e+00	97.8
WP_004355019.1\|2622631_2622946_+	hypothetical protein	NA	NA	NA	NA
WP_004354996.1\|2623051_2624272_-	recombination-associated protein RdgC	L7TP07	Pseudomonas_virus	1.5e-162	98.0
WP_034010289.1\|2624298_2624796_-	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	9.9e-92	100.0
WP_034010291.1\|2624799_2625405_-	3'-5' exonuclease	A0A0U1W072	Pseudomonas_phage	4.7e-112	99.5
WP_128623093.1\|2625534_2626551_-	DUF1351 domain-containing protein	A0A0U1UNR0	Pseudomonas_phage	1.4e-119	98.5
2625457:2625473	attR	NA	NA	NA	NA
WP_034010293.1\|2626555_2627311_-	hypothetical protein	A0A0U1UNQ9	Pseudomonas_phage	9.0e-145	99.6
WP_034010295.1\|2627572_2627944_-	hypothetical protein	A0A2K8HNX4	Pseudomonas_phage	1.3e-59	98.4
WP_023082364.1\|2627940_2628162_-	hypothetical protein	A0A0U1SZL8	Pseudomonas_phage	9.3e-34	94.5
WP_019396719.1\|2628288_2628792_-	hypothetical protein	J7I0S8	Pseudomonas_phage	1.1e-98	97.6
WP_022579931.1\|2629271_2629643_-	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	1.6e-62	99.2
WP_020750452.1\|2629677_2629890_-	hypothetical protein	L7TKR9	Pseudomonas_virus	5.8e-33	97.1
WP_031641801.1\|2629943_2630123_-	hypothetical protein	NA	NA	NA	NA
WP_015649351.1\|2630408_2630615_-	hypothetical protein	A0A0U4IJ22	Pseudomonas_phage	3.9e-34	97.1
WP_023082999.1\|2630625_2630832_-	hypothetical protein	A0A0U4B0I0	Pseudomonas_phage	2.2e-29	94.1
WP_128623094.1\|2631608_2631929_+	DUF1654 domain-containing protein	A0A127KNY9	Pseudomonas_phage	2.6e-45	91.3
WP_128623105.1\|2632428_2633049_-	helix-turn-helix transcriptional regulator	J7I0S2	Pseudomonas_phage	4.0e-106	91.2
WP_031692832.1\|2633206_2633410_+	hypothetical protein	J7I423	Pseudomonas_phage	9.1e-28	98.5
WP_102969951.1\|2633509_2634526_+	phage replication protein	A0A0U1UNR4	Pseudomonas_phage	7.3e-150	99.7
WP_128623096.1\|2634512_2635370_+	hypothetical protein	A0A0U1UNR3	Pseudomonas_phage	2.4e-146	98.9
WP_019486230.1\|2635362_2635914_+	hypothetical protein	A0A0U1W0G1	Pseudomonas_phage	2.2e-100	99.5
WP_004354944.1\|2635913_2636528_+	hypothetical protein	A0A0U1VZM0	Pseudomonas_phage	4.3e-113	100.0
WP_019486228.1\|2636606_2637101_+	hypothetical protein	A0A0U1VYN2	Pseudomonas_phage	4.2e-82	99.4
WP_004349191.1\|2637480_2638047_+	hypothetical protein	A0A2K8HN72	Pseudomonas_phage	4.2e-94	94.7
WP_127891063.1\|2638043_2639327_+\|terminase	PBSX family phage terminase large subunit	A0A2K8HZU7	Pseudomonas_phage	3.2e-259	99.5
WP_127891062.1\|2639336_2641655_+	hypothetical protein	A0A2K8HKC3	Pseudomonas_phage	0.0e+00	99.7
WP_155375932.1\|2641801_2642932_+	hypothetical protein	Q5QF43	Pseudomonas_virus	5.4e-178	97.6
WP_004349199.1\|2642944_2644237_+	DUF4043 family protein	A0A2K8IBP1	Pseudomonas_phage	2.2e-252	100.0
WP_010793302.1\|2644295_2644775_+	hypothetical protein	A0A2K8HNV7	Pseudomonas_phage	6.4e-80	100.0
WP_034010308.1\|2644839_2645712_+	hypothetical protein	A0A0U1UNM5	Pseudomonas_phage	1.2e-164	99.3
WP_034010309.1\|2645708_2646386_+	hypothetical protein	A0A0U1UNR8	Pseudomonas_phage	2.5e-130	99.6
WP_004349207.1\|2646382_2646589_+	hypothetical protein	A0A0U1SXT5	Pseudomonas_phage	1.3e-29	100.0
WP_004349209.1\|2646569_2646977_+	hypothetical protein	A0A0U1UNR7	Pseudomonas_phage	8.7e-70	100.0
WP_020750783.1\|2647000_2647426_+	hypothetical protein	A0A2K8HN63	Pseudomonas_phage	2.9e-84	99.3
WP_004354920.1\|2647425_2648283_+	hypothetical protein	A0A0U1VYN7	Pseudomonas_phage	4.0e-157	100.0
WP_128623115.1\|2648285_2651249_+	hypothetical protein	A0A0U1W084	Pseudomonas_phage	0.0e+00	98.3
WP_019486217.1\|2651248_2652439_+	hypothetical protein	A0A2K8HL79	Pseudomonas_phage	3.8e-222	97.7
WP_010793297.1\|2652506_2653097_+	hypothetical protein	A0A0U1VYN6	Pseudomonas_phage	8.1e-101	99.0
WP_019486216.1\|2653101_2655699_+	hypothetical protein	A0A0U1W0G7	Pseudomonas_phage	0.0e+00	99.3
WP_079200511.1\|2656249_2656855_+	hypothetical protein	Q5QF56	Pseudomonas_virus	2.1e-88	81.6
WP_044727374.1\|2656855_2658748_+	hypothetical protein	A0A0U1SZM6	Pseudomonas_phage	7.2e-183	99.3

DBSCAN-SWA_6

2662773 : 2676157

Pseudomonas_phage(75.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058160662.1\|2662773_2672643_+	PLxRFG domain-containing protein	L7TID4	Pseudomonas_virus	0.0e+00	97.1
WP_004349234.1\|2672737_2672995_+\|holin	holin	A0A0U1UNM6	Pseudomonas_phage	6.8e-36	98.8
WP_033949896.1\|2672978_2673512_+	glycoside hydrolase family protein	A0A0U1UNS2	Pseudomonas_phage	2.8e-100	97.7
WP_033957455.1\|2673508_2674027_+	hypothetical protein	A0A0U1UNS0	Pseudomonas_phage	1.1e-69	95.9
WP_033949890.1\|2674037_2674631_+	DUF1737 domain-containing protein	A0A0U1VYP2	Pseudomonas_phage	1.0e-74	98.0
WP_071536198.1\|2674707_2675337_+	DUF4124 domain-containing protein	A0A2K8IBL8	Pseudomonas_phage	5.5e-55	61.7
WP_023082390.1\|2675374_2675641_+	hypothetical protein	L7TP56	Pseudomonas_virus	6.3e-45	100.0
WP_128622988.1\|2675644_2676157_-	hypothetical protein	A0A2K8HVM8	Pseudomonas_phage	9.2e-93	92.9

DBSCAN-SWA_7

3788235 : 3856810

Pseudomonas_phage(58.18%)

tRNA,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078452316.1\|3788235_3788868_-	DUF4124 domain-containing protein	A0A2K8IBL8	Pseudomonas_phage	9.2e-42	49.3
WP_004349239.1\|3788976_3789570_-	DUF1737 domain-containing protein	A0A0U1VYP2	Pseudomonas_phage	5.7e-70	89.8
WP_004349238.1\|3789580_3790102_-	hypothetical protein	L7THB0	Pseudomonas_virus	8.6e-62	84.4
WP_023091947.1\|3790105_3790633_-	glycoside hydrolase family protein	A0A0U1UNS2	Pseudomonas_phage	2.9e-97	96.6
WP_004349234.1\|3790616_3790874_-\|holin	holin	A0A0U1UNM6	Pseudomonas_phage	6.8e-36	98.8
WP_096229650.1\|3790968_3800802_-	PLxRFG domain-containing protein	L7TID4	Pseudomonas_virus	0.0e+00	92.4
WP_023091949.1\|3802295_3804383_-	hypothetical protein	Q5QF54	Pseudomonas_virus	0.0e+00	99.3
WP_023091950.1\|3804464_3806357_-	hypothetical protein	L7THA5	Pseudomonas_virus	1.0e-181	98.8
WP_004349225.1\|3806356_3806962_-	hypothetical protein	Q5QF56	Pseudomonas_virus	2.2e-109	100.0
WP_004349223.1\|3807512_3810020_-	hypothetical protein	Q5QF48	Pseudomonas_virus	0.0e+00	99.4
WP_004349221.1\|3810114_3810705_-	hypothetical protein	A0A0U1VYN6	Pseudomonas_phage	1.3e-101	100.0
WP_004349219.1\|3810772_3811963_-	hypothetical protein	A0A0U1UNT0	Pseudomonas_phage	7.4e-226	100.0
WP_004349217.1\|3811962_3814926_-	hypothetical protein	A0A0U1W084	Pseudomonas_phage	0.0e+00	100.0
WP_004349215.1\|3814928_3815786_-	hypothetical protein	Q5QF52	Pseudomonas_virus	1.2e-156	100.0
WP_023091954.1\|3816104_3816500_-	hypothetical protein	NA	NA	NA	NA
WP_004349209.1\|3816525_3816933_-	hypothetical protein	A0A0U1UNR7	Pseudomonas_phage	8.7e-70	100.0
WP_004349207.1\|3816913_3817120_-	hypothetical protein	A0A0U1SXT5	Pseudomonas_phage	1.3e-29	100.0
WP_004349205.1\|3817116_3817794_-	hypothetical protein	A0A0U1UNR8	Pseudomonas_phage	4.3e-130	99.6
WP_004349203.1\|3817790_3818663_-	hypothetical protein	A0A0U1UNM5	Pseudomonas_phage	2.4e-165	99.7
WP_004349201.1\|3818727_3819207_-	hypothetical protein	A0A2K8HNV7	Pseudomonas_phage	8.4e-80	99.4
WP_004349199.1\|3819265_3820558_-	DUF4043 family protein	A0A2K8IBP1	Pseudomonas_phage	2.2e-252	100.0
WP_063456221.1\|3820570_3821701_-	hypothetical protein	Q5QF43	Pseudomonas_virus	2.2e-179	97.9
WP_128623117.1\|3821862_3822774_-	hypothetical protein	Q5QF73	Pseudomonas_virus	1.0e-163	95.7
WP_004349195.1\|3822853_3825175_-	hypothetical protein	L7TJP4	Pseudomonas_virus	0.0e+00	99.0
WP_023082374.1\|3825184_3826468_-\|terminase	PBSX family phage terminase large subunit	A0A2K8HZU7	Pseudomonas_phage	1.2e-258	99.5
WP_004349191.1\|3826464_3827031_-	hypothetical protein	A0A2K8HN72	Pseudomonas_phage	4.2e-94	94.7
WP_023980885.1\|3827183_3827408_+	hypothetical protein	A0A0U1UNS7	Pseudomonas_phage	2.7e-33	98.6
WP_004349189.1\|3827410_3827905_-	hypothetical protein	A0A0U1VYN2	Pseudomonas_phage	3.2e-82	99.4
WP_023082373.1\|3827983_3828598_-	hypothetical protein	A0A0U1VZM0	Pseudomonas_phage	9.0e-111	98.5
WP_004349186.1\|3828653_3829205_-	hypothetical protein	A0A2K8I9A9	Pseudomonas_phage	4.9e-100	98.9
WP_004349183.1\|3829197_3830055_-	hypothetical protein	A0A2K8HNW6	Pseudomonas_phage	1.4e-146	99.3
WP_034085198.1\|3830041_3831073_-	hypothetical protein	A0A0U1UNR4	Pseudomonas_phage	2.7e-147	98.3
WP_004349179.1\|3831074_3831275_-	Cro/Cl family transcriptional regulator	A0A2K8HL98	Pseudomonas_phage	1.8e-28	100.0
WP_004349176.1\|3831382_3832180_+	helix-turn-helix transcriptional regulator	A0A2K8HKD5	Pseudomonas_phage	5.4e-148	99.6
WP_004349174.1\|3832216_3832483_-	DUF1654 domain-containing protein	A0A2K8HZW3	Pseudomonas_phage	2.3e-42	100.0
WP_004349170.1\|3833116_3833323_+	hypothetical protein	Q5QF70	Pseudomonas_virus	3.3e-33	97.1
WP_004349169.1\|3833387_3833600_+	hypothetical protein	L7TKR9	Pseudomonas_virus	4.9e-32	94.3
WP_004349168.1\|3833634_3834006_+	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	2.9e-48	77.2
WP_034058628.1\|3834062_3834632_-	hypothetical protein	NA	NA	NA	NA
WP_023091958.1\|3834900_3835122_+	hypothetical protein	A0A0U1SZL8	Pseudomonas_phage	7.1e-34	95.9
WP_023091959.1\|3835118_3835490_+	hypothetical protein	A0A2K8HNX4	Pseudomonas_phage	1.3e-59	98.4
WP_023091960.1\|3835760_3836459_+	hypothetical protein	A0A1Y0T023	Pseudomonas_phage	1.2e-31	54.3
WP_023091961.1\|3836455_3838093_+	hypothetical protein	A0A2H4J6F0	uncultured_Caudovirales_phage	5.5e-139	63.1
WP_004349164.1\|3838214_3838820_+	3'-5' exonuclease	A0A0U1W072	Pseudomonas_phage	7.3e-113	100.0
WP_023091962.1\|3838823_3839321_+	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	4.9e-91	98.8
WP_023091963.1\|3839347_3840568_+	recombination-associated protein RdgC	L7TP07	Pseudomonas_virus	1.7e-161	97.7
WP_004355019.1\|3840673_3840988_-	hypothetical protein	NA	NA	NA	NA
WP_124117754.1\|3841277_3841604_-	hypothetical protein	NA	NA	NA	NA
WP_004349415.1\|3841720_3842521_+	hypothetical protein	A0A1J0GVP2	Pseudoalteromonas_phage	8.6e-45	47.4
WP_023980880.1\|3842520_3844290_+	DNA methyltransferase	Q9ZXI4	Pseudomonas_virus	1.5e-286	94.0
WP_023091964.1\|3844471_3845536_+	ATP-binding protein	NA	NA	NA	NA
WP_003451766.1\|3845539_3845863_+	STAS-like domain-containing protein	NA	NA	NA	NA
WP_023091965.1\|3846529_3846904_+	hypothetical protein	Q5QF32	Pseudomonas_virus	2.2e-67	96.8
WP_023091966.1\|3846911_3847106_+	hypothetical protein	NA	NA	NA	NA
WP_004349158.1\|3847098_3847605_+	hypothetical protein	L7TI83	Pseudomonas_virus	1.8e-85	94.6
WP_004349157.1\|3847702_3848377_+	hypothetical protein	A0A2K8HL62	Pseudomonas_phage	2.6e-26	88.4
WP_004349155.1\|3849457_3849691_-	hypothetical protein	NA	NA	NA	NA
WP_004349153.1\|3849961_3850195_+	AlpA family phage regulatory protein	A0A0U1W0F1	Pseudomonas_phage	2.4e-40	100.0
WP_004349150.1\|3850195_3851431_-	DUF4102 domain-containing protein	A0A0U1UNT3	Pseudomonas_phage	8.4e-233	98.8
WP_003087898.1\|3852215_3853070_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	3.0e-27	34.7
WP_003113587.1\|3853127_3854510_-\|tRNA	cysteine--tRNA ligase	A0A2K9L6B7	Tupanvirus	6.9e-42	31.6
WP_003139945.1\|3854519_3856190_-\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	4.8e-199	60.3
WP_003087890.1\|3856312_3856810_+	peptidyl-prolyl cis-trans isomerase	A0A076FI46	Aureococcus_anophage	1.4e-13	32.9

DBSCAN-SWA_8

4725606 : 4768531

Pseudomonas_phage(75.51%)

integrase,terminase,tail

attL 4722609:4722668|attR 4767637:4767700

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4722609:4722668	attL	NA	NA	NA	NA
WP_128622954.1\|4725606_4728150_-	hypothetical protein	A0A193GZ61	Enterobacter_phage	1.3e-198	44.9
WP_128622955.1\|4728149_4730072_-	hypothetical protein	A0A2H4J9W0	uncultured_Caudovirales_phage	4.4e-95	38.8
WP_128622956.1\|4730068_4732105_-	hypothetical protein	W6MYA2	Pseudomonas_phage	3.5e-58	41.1
WP_017001675.1\|4732104_4732569_-	hypothetical protein	W6MVK9	Pseudomonas_phage	1.1e-73	97.4
WP_023127492.1\|4732553_4733033_-	hypothetical protein	W6MW30	Pseudomonas_phage	1.3e-83	95.0
WP_128622957.1\|4733013_4735353_-	hypothetical protein	W6MWW6	Pseudomonas_phage	0.0e+00	98.1
WP_128622958.1\|4735349_4735979_-	hypothetical protein	W6MVD9	Pseudomonas_phage	8.1e-115	98.1
WP_017001680.1\|4736208_4736667_-	hypothetical protein	W6MVK6	Pseudomonas_phage	5.2e-71	99.3
WP_023125056.1\|4736677_4737682_-	hypothetical protein	W6MW28	Pseudomonas_phage	4.5e-184	99.7
WP_023980925.1\|4737694_4738318_-	hypothetical protein	W6MWW5	Pseudomonas_phage	1.1e-82	97.1
WP_033990173.1\|4738314_4738626_-	hypothetical protein	W6MVD5	Pseudomonas_phage	5.5e-48	93.2
WP_128622959.1\|4738626_4740315_-\|tail	phage tail protein	W6MYA0	Pseudomonas_phage	0.0e+00	98.8
WP_017001685.1\|4740316_4740571_-	hypothetical protein	W6MVK3	Pseudomonas_phage	2.2e-34	95.2
WP_058171613.1\|4740582_4742007_-	hypothetical protein	W6MW26	Pseudomonas_phage	1.0e-282	98.1
WP_124167595.1\|4742032_4742479_-\|terminase	terminase	W6MWW3	Pseudomonas_phage	5.1e-79	98.0
WP_128622960.1\|4742714_4743203_-	hypothetical protein	NA	NA	NA	NA
WP_128622980.1\|4743311_4743641_-	hypothetical protein	B5WZZ2	Pseudomonas_phage	9.0e-49	92.7
WP_128622961.1\|4743833_4744268_-	lysozyme	A0A0S2SYD0	Pseudomonas_phage	4.1e-33	51.4
WP_034063048.1\|4744264_4744657_-	hypothetical protein	B5WZY9	Pseudomonas_phage	5.6e-66	99.2
WP_128622962.1\|4745480_4746053_-	hypothetical protein	H2BDI9	Pseudomonas_virus	2.6e-27	37.4
WP_058836762.1\|4746049_4747063_-	hypothetical protein	NA	NA	NA	NA
WP_128622963.1\|4747062_4747365_-	DUF3310 domain-containing protein	Q774Z7	Bordetella_phage	2.4e-24	78.5
WP_128622964.1\|4747364_4747748_-	hypothetical protein	A0A140XG32	Salmonella_phage	1.2e-07	35.0
WP_128622965.1\|4747744_4747963_-	hypothetical protein	NA	NA	NA	NA
WP_025997431.1\|4747959_4748262_-	hypothetical protein	A0A0H5ARP9	Pseudomonas_phage	3.4e-34	70.0
WP_128622966.1\|4748258_4748528_-	hypothetical protein	B5WZY5	Pseudomonas_phage	1.3e-13	50.0
WP_003158992.1\|4748524_4748926_-	NinB family protein	A0A059VG13	Pseudomonas_phage	5.8e-34	53.6
WP_023125070.1\|4748918_4749134_-	hypothetical protein	A0A125RNK4	Pseudomonas_phage	1.2e-33	93.0
WP_128622967.1\|4749275_4750091_-	AAA family ATPase	A0A059VK34	Pseudomonas_phage	4.0e-74	53.8
WP_128622968.1\|4750080_4750881_-	phage replication protein	A0A2H4J580	uncultured_Caudovirales_phage	4.4e-65	49.8
WP_033990280.1\|4750956_4751160_-	hypothetical protein	NA	NA	NA	NA
WP_023125075.1\|4751179_4751380_-	hypothetical protein	A0A2H4J528	uncultured_Caudovirales_phage	1.1e-14	64.6
WP_079992473.1\|4751730_4752402_+	helix-turn-helix domain-containing protein	B5WZX5	Pseudomonas_phage	2.5e-61	51.4
WP_079866880.1\|4752837_4753227_+	hypothetical protein	NA	NA	NA	NA
WP_128622969.1\|4753844_4754108_+	hypothetical protein	H2BD57	Pseudomonas_phage	3.1e-44	95.4
WP_003140707.1\|4754149_4754689_+	hypothetical protein	J7HXB1	Pseudomonas_phage	1.6e-95	99.4
WP_070874785.1\|4754745_4755114_+	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	1.6e-62	97.5
WP_128666723.1\|4755588_4756587_+	hypothetical protein	A0A0U3TGV3	Pseudomonas_phage	1.0e-74	80.7
WP_128622971.1\|4756769_4756955_+	DUF551 domain-containing protein	H2BDH1	Pseudomonas_virus	6.2e-31	91.8
WP_025297920.1\|4756971_4757283_+	hypothetical protein	B5WZX2	Pseudomonas_phage	5.7e-05	39.3
WP_033972687.1\|4757317_4757731_+	hypothetical protein	A0A0U4JNY7	Pseudomonas_phage	2.8e-76	98.5
WP_128622972.1\|4758044_4758341_+	hypothetical protein	NA	NA	NA	NA
WP_058199615.1\|4758337_4758703_+	hypothetical protein	W6MYA8	Pseudomonas_phage	1.4e-63	95.8
WP_058199614.1\|4758699_4759227_+	hypothetical protein	A0A127KN62	Pseudomonas_phage	1.5e-53	56.6
WP_128622973.1\|4759223_4759511_+	hypothetical protein	NA	NA	NA	NA
WP_128622974.1\|4759961_4760282_+	hypothetical protein	NA	NA	NA	NA
WP_070136378.1\|4760327_4760861_+	hypothetical protein	A0A0F7L6F4	uncultured_marine_virus	9.2e-11	35.6
WP_128622975.1\|4760829_4761447_+	YqaJ-like viral recombinase	S0A2A9	Cellulophaga_phage	6.9e-42	46.8
WP_128622976.1\|4761450_4761729_+	hypothetical protein	A0A0H5AW97	Pseudomonas_phage	1.1e-23	71.4
WP_033991227.1\|4761792_4762434_+	hypothetical protein	NA	NA	NA	NA
WP_052151589.1\|4762596_4762821_+	hypothetical protein	A0A0U4J8X2	Pseudomonas_phage	2.7e-36	98.6
WP_124209041.1\|4764043_4764271_+	hypothetical protein	NA	NA	NA	NA
WP_033989678.1\|4764263_4764446_+	hypothetical protein	A0A2H5BQE7	Pseudomonas_phage	4.5e-18	90.4
WP_094867540.1\|4764438_4764855_+	hypothetical protein	H2BDE9	Pseudomonas_virus	8.5e-20	94.1
WP_128622977.1\|4764899_4765217_+	hypothetical protein	A0A0U4JVQ0	Pseudomonas_phage	2.4e-51	92.4
WP_128622981.1\|4765431_4765710_+	hypothetical protein	B5WZV5	Pseudomonas_phage	9.6e-20	62.0
WP_128622978.1\|4765702_4766239_+	ead/Ea22-like family protein	A0A0S2SY48	Pseudomonas_phage	1.8e-30	52.5
WP_074198342.1\|4766553_4767528_-\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	1.8e-177	98.8
WP_003108622.1\|4767820_4768531_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HWF9	Synechococcus_phage	1.5e-40	37.6
4767637:4767700	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4981249 : 4992569

Pseudomonas_phage(90.91%)

integrase

attL 4980706:4980732|attR 4991165:4991191

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4980706:4980732	attL	NA	NA	NA	NA
WP_058143883.1\|4981249_4982272_-\|integrase	tyrosine-type recombinase/integrase	Q56VN7	Pseudomonas_phage	2.9e-98	54.3
WP_058143884.1\|4982271_4983564_-	hypothetical protein	Q56VN8	Pseudomonas_phage	4.5e-253	96.8
WP_058148051.1\|4983820_4985083_-	hypothetical protein	Q56VN9	Pseudomonas_phage	1.0e-116	54.3
WP_003133726.1\|4985084_4985435_-	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	1.6e-19	40.2
WP_126859635.1\|4985444_4986389_-	hypothetical protein	NA	NA	NA	NA
WP_003124953.1\|4986705_4986924_-	hypothetical protein	NA	NA	NA	NA
WP_034018048.1\|4986937_4987189_-	hypothetical protein	NA	NA	NA	NA
WP_003115130.1\|4987200_4987293_-	hypothetical protein	Q56VP4	Pseudomonas_phage	7.3e-09	100.0
WP_034018047.1\|4987309_4987744_-	hypothetical protein	Q56VP5	Pseudomonas_phage	8.4e-63	99.3
WP_058143887.1\|4987877_4988255_-	hypothetical protein	Q56VP6	Pseudomonas_phage	1.1e-61	98.4
WP_034017784.1\|4988258_4988549_-	hypothetical protein	Q56VP7	Pseudomonas_phage	7.4e-55	96.9
WP_058143888.1\|4988552_4988765_-	hypothetical protein	Q56VP8	Pseudomonas_phage	3.7e-32	92.9
WP_024918435.1\|4988767_4988983_-	hypothetical protein	Q56VP9	Pseudomonas_phage	2.8e-35	95.8
WP_128623003.1\|4989904_4991023_+	hypothetical protein	NA	NA	NA	NA
WP_034075128.1\|4991363_4992569_+	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.6e-101	47.8
4991165:4991191	attR	NA	NA	NA	NA

DBSCAN-SWA_10

5674965 : 5714481

Enterobacteria_phage(14.29%)

tRNA,coat,integrase

attL 5694075:5694090|attR 5718933:5718948

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023100253.1\|5674965_5675514_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003146046.1\|5675544_5676078_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_004355220.1\|5676077_5676620_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003121045.1\|5676638_5677427_+	molecular chaperone	NA	NA	NA	NA
WP_034074165.1\|5677443_5679819_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_003099330.1\|5679815_5680763_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_034074163.1\|5680764_5682138_-	MFS transporter	NA	NA	NA	NA
WP_021264089.1\|5682417_5683440_-	ferrochelatase	NA	NA	NA	NA
WP_003114699.1\|5683436_5684354_-	TIGR01777 family protein	NA	NA	NA	NA
WP_003094987.1\|5684767_5685751_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_021264088.1\|5685903_5686860_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_003141623.1\|5686869_5687769_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	8.5e-17	39.1
WP_021264087.1\|5687765_5689211_+	deoxyribodipyrimidine photo-lyase	A0A167RC11	Powai_lake_megavirus	1.1e-45	28.0
WP_003099307.1\|5689336_5689858_-	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.4e-59	69.8
WP_003099300.1\|5689991_5690789_-	glutamate racemase	NA	NA	NA	NA
WP_033996051.1\|5690778_5691537_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_022580113.1\|5691530_5692361_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_003094997.1\|5692362_5693445_-	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	4.3e-07	48.3
WP_003095001.1\|5693462_5694731_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
5694075:5694090	attL	NA	NA	NA	NA
WP_003135130.1\|5694874_5696647_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003095005.1\|5696651_5697269_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_009878189.1\|5697270_5698119_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_003099281.1\|5698285_5699227_+	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	4.1e-46	35.4
WP_003095013.1\|5699343_5699958_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_003099278.1\|5699999_5700584_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003099270.1\|5700624_5701725_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_034074160.1\|5701932_5703144_+\|integrase	site-specific integrase	B7SYF8	Stenotrophomonas_phage	1.6e-58	35.7
WP_024914550.1\|5703389_5704451_+	Fic family protein	NA	NA	NA	NA
WP_034074158.1\|5704577_5707376_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_024914548.1\|5707391_5709056_+	type I restriction-modification system subunit M	A0A1V0SLK8	Klosneuvirus	4.9e-26	30.0
WP_079385712.1\|5709052_5710669_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_034074155.1\|5710665_5712504_+	restriction system-associated AAA family ATPase	NA	NA	NA	NA
WP_024914545.1\|5712503_5713562_+	hypothetical protein	NA	NA	NA	NA
WP_024914544.1\|5713617_5714481_-\|integrase	integrase	NA	NA	NA	NA
5718933:5718948	attR	NA	NA	NA	NA

DBSCAN-SWA_11

5933937 : 5975120

Pseudomonas_phage(90.74%)

capsid,head,transposase,integrase,tail

attL 5943832:5943848|attR 5972667:5972683

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015649550.1\|5933937_5934162_-	hypothetical protein	H1ZZG9	Pseudomonas_virus	4.2e-34	100.0
WP_034040253.1\|5934240_5934459_-	hypothetical protein	I6PBD6	Pseudomonas_phage	1.3e-27	88.9
WP_034040256.1\|5934455_5934758_-	hypothetical protein	A0SMR0	Pseudomonas_virus	5.2e-43	84.0
WP_034040259.1\|5934757_5935603_-	DUF2793 domain-containing protein	I6P8E4	Pseudomonas_phage	3.8e-152	94.7
WP_128622592.1\|5935599_5937807_-	hypothetical protein	I6PCB1	Pseudomonas_phage	0.0e+00	98.5
WP_004367213.1\|5937796_5938015_-	hypothetical protein	I6P9E8	Pseudomonas_phage	3.4e-36	100.0
WP_003126844.1\|5938011_5938251_-	hypothetical protein	I6P9F0	Pseudomonas_phage	4.4e-37	98.7
WP_052163572.1\|5938259_5939081_-	DUF2163 domain-containing protein	I6PBD5	Pseudomonas_phage	2.1e-155	99.2
WP_034040267.1\|5939070_5940774_-	hypothetical protein	B7SE08	Pseudomonas_virus	0.0e+00	98.2
WP_014604005.1\|5940773_5941697_-	hypothetical protein	B7SE07	Pseudomonas_virus	5.4e-176	93.8
WP_128622769.1\|5941698_5942655_-	hypothetical protein	A0A0A7DK02	Pseudomonas_phage	6.6e-185	96.5
WP_033965901.1\|5942662_5946505_-\|tail	phage tail tape measure protein	A0A0S4L7E6	Pseudomonas_phage	0.0e+00	95.2
5943832:5943848	attL	NA	NA	NA	NA
WP_003152203.1\|5946731_5947238_-	hypothetical protein	J9STK7	Pseudomonas_phage	1.3e-86	96.4
WP_003094267.1\|5947239_5947992_-	hypothetical protein	A0A0S4L1I6	Pseudomonas_phage	4.6e-141	100.0
WP_003139972.1\|5947995_5948205_-	hypothetical protein	A0A0S4L313	Pseudomonas_phage	2.4e-31	100.0
WP_003094263.1\|5948201_5948657_-	hypothetical protein	A0A0S4L2X9	Pseudomonas_phage	8.5e-82	100.0
WP_003094261.1\|5948658_5949168_-	DUF1320 domain-containing protein	A0A0S4L0B5	Pseudomonas_phage	1.0e-91	100.0
WP_003094258.1\|5949175_5949502_-	hypothetical protein	A0A0S4L5D5	Pseudomonas_phage	1.1e-51	100.0
WP_003094256.1\|5949501_5949696_-	hypothetical protein	A0A0S4L2Y0	Pseudomonas_phage	6.0e-29	100.0
WP_128622770.1\|5949742_5950672_-\|capsid	phage capsid protein	Q5ZQX7	Pseudomonas_phage	1.1e-173	97.1
WP_003152198.1\|5950683_5951061_-	hypothetical protein	A0A0S4L3C3	Pseudomonas_phage	3.5e-57	98.4
WP_023442965.1\|5951064_5952312_-	peptidase	J9SGT4	Pseudomonas_phage	7.3e-184	93.3
WP_031630686.1\|5952530_5953103_-	phage virion morphogenesis protein	J9SN67	Pseudomonas_phage	4.3e-99	96.8
WP_031630688.1\|5953099_5954350_-\|head	phage head morphogenesis protein	J9SWK6	Pseudomonas_phage	1.5e-240	100.0
WP_003152194.1\|5954349_5955828_-	DUF935 family protein	J9RWN4	Pseudomonas_phage	1.4e-287	100.0
WP_003139988.1\|5955827_5957531_-	hypothetical protein	A0A0S4L072	Pseudomonas_phage	0.0e+00	99.8
WP_003094238.1\|5957532_5958108_-	DUF3486 family protein	J9SNV5	Pseudomonas_phage	7.4e-91	100.0
WP_003139994.1\|5958113_5958410_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	4.6e-52	100.0
WP_003094234.1\|5958411_5958801_-	hypothetical protein	A0A0S4L2V7	Pseudomonas_phage	5.2e-64	100.0
WP_023657073.1\|5958804_5959416_-	hypothetical protein	A0A0S4L1H0	Pseudomonas_phage	3.5e-99	97.5
WP_031638435.1\|5959596_5960226_-	transglycosylase SLT domain-containing protein	J9SHG5	Pseudomonas_phage	8.4e-120	99.5
WP_003094225.1\|5960383_5960641_-	membrane protein	A0A0S4L5C0	Pseudomonas_phage	7.2e-38	100.0
WP_031636321.1\|5960853_5961609_+	hypothetical protein	A0A0S4L2W3	Pseudomonas_phage	2.5e-70	84.3
WP_031636322.1\|5961581_5961785_-	hypothetical protein	A0A0S4L2S2	Pseudomonas_phage	5.9e-19	65.7
WP_126620882.1\|5961801_5962269_-	hypothetical protein	J9SVN1	Pseudomonas_phage	2.4e-63	79.9
WP_044264506.1\|5962293_5962680_-	helix-turn-helix domain-containing protein	J9SH16	Pseudomonas_phage	3.9e-11	65.4
WP_023123664.1\|5962769_5963000_+	DNA-binding protein	J9RWM8	Pseudomonas_phage	3.2e-37	100.0
WP_023127889.1\|5963284_5963509_-	hypothetical protein	NA	NA	NA	NA
WP_031636324.1\|5963632_5964121_+	hypothetical protein	J9SVV8	Pseudomonas_phage	1.4e-90	98.8
WP_031636325.1\|5964113_5964374_+	hypothetical protein	J9RWD0	Pseudomonas_phage	4.3e-38	94.2
WP_031636327.1\|5964370_5964685_+	hypothetical protein	J9SVM2	Pseudomonas_phage	2.0e-50	99.0
WP_031636328.1\|5964694_5965669_+	hypothetical protein	J9SND0	Pseudomonas_phage	1.5e-139	88.0
WP_031636329.1\|5965672_5967457_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	J9STP5	Pseudomonas_phage	0.0e+00	98.0
WP_016852441.1\|5967456_5968623_+	AAA family ATPase	J9SVV1	Pseudomonas_phage	1.0e-216	100.0
WP_016852440.1\|5968624_5968966_+	hypothetical protein	J9RWC3	Pseudomonas_phage	3.5e-56	99.1
WP_014603990.1\|5968962_5969247_+	hypothetical protein	J9SGZ7	Pseudomonas_phage	3.4e-44	100.0
WP_033953838.1\|5969246_5969927_+	hypothetical protein	J9SNC1	Pseudomonas_phage	8.4e-126	97.3
WP_033953841.1\|5969916_5970450_+	hypothetical protein	J9STN6	Pseudomonas_phage	5.6e-93	98.9
WP_033953843.1\|5970442_5970643_+	bacteriophage protein	J9RWL7	Pseudomonas_phage	4.8e-29	95.5
WP_033953845.1\|5970635_5971259_+	DUF3164 family protein	Q5ZR10	Pseudomonas_phage	1.1e-103	93.2
WP_016852434.1\|5971944_5972136_+	hypothetical protein	J9RW45	Pseudomonas_phage	5.0e-28	100.0
WP_034075666.1\|5972135_5972603_+	hypothetical protein	J9STM8	Pseudomonas_phage	2.5e-60	83.2
WP_031638311.1\|5972589_5973153_+	regulatory protein GemA	Q5ZR14	Pseudomonas_phage	5.6e-99	98.9
5972667:5972683	attR	NA	NA	NA	NA
WP_003094179.1\|5973155_5973515_+	hypothetical protein	A0A0S4L0M4	Pseudomonas_phage	6.5e-61	100.0
WP_003105134.1\|5974421_5975120_+	urea ABC transporter ATP-binding subunit UrtE	A0A2H4PQG7	Staphylococcus_phage	1.7e-12	24.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP039989

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP039988

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection