CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP041951	Klebsiella pneumoniae strain KP2 plasmid pKP2_5, complete sequence	0 crisprs	NA	0
NZ_CP041948	Klebsiella pneumoniae strain KP2 plasmid pKP2_2, complete sequence	0 crisprs	RT	0
NZ_CP041954	Klebsiella pneumoniae strain KP2 plasmid pKP2_8, complete sequence	0 crisprs	NA	0
NZ_CP041946	Klebsiella pneumoniae strain KP2 chromosome, complete genome	1 crisprs	csa3,cas3,DEDDh,DinG,WYL	11
NZ_CP041949	Klebsiella pneumoniae strain KP2 plasmid pKP2_3, complete sequence	0 crisprs	NA	1
NZ_CP041952	Klebsiella pneumoniae strain KP2 plasmid pKP2_6, complete sequence	0 crisprs	NA	0
NZ_CP041947	Klebsiella pneumoniae strain KP2 plasmid pKP2_1, complete sequence	0 crisprs	NA	1
NZ_CP041950	Klebsiella pneumoniae strain KP2 plasmid pKP2_4, complete sequence	0 crisprs	NA	0
NZ_CP041953	Klebsiella pneumoniae strain KP2 plasmid pKP2_7, complete sequence	0 crisprs	DEDDh	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1727 : 67720

Escherichia_phage(20.0%)

integrase,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001515717.1\|1727_2468_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_004152065.1\|3611_4559_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
WP_071527918.1\|4585_4897_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004152067.1\|4961_5885_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.1e-175	98.4
WP_004197688.1\|6557_6815_-	hypothetical protein	NA	NA	NA	NA
WP_080895248.1\|7434_8871_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004152070.1\|9853_11131_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_004178088.1\|11193_13191_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
WP_085955172.1\|14230_15438_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178091.1\|16866_17298_-	silver-binding protein SilE	NA	NA	NA	NA
WP_003032875.1\|17548_19024_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_001572351.1\|19016_19697_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	35.6
WP_000475512.1\|19886_21272_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001246153.1\|21300_21654_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_004152079.1\|21767_23060_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_004098958.1\|23070_26217_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	4.0e-61	22.5
WP_000758228.1\|26303_26744_+	hypothetical protein	NA	NA	NA	NA
WP_004098955.1\|26870_29318_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	7.6e-84	35.8
WP_000843497.1\|29358_29556_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004118669.1\|29589_30327_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_001023257.1\|30615_31065_-	copper resistance protein	NA	NA	NA	NA
WP_000925242.1\|31298_33116_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_077255522.1\|33605_34952_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_032422684.1\|35000_35399_+	helix-turn-helix domain containing protein	NA	NA	NA	NA
WP_020314316.1\|35594_36941_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_004152113.1\|38783_39746_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_009483782.1\|39732_40482_-	diguanylate cyclase	NA	NA	NA	NA
WP_004152115.1\|40719_40917_-	hypothetical protein	NA	NA	NA	NA
WP_004152116.1\|40916_43712_-	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
WP_004152117.1\|43826_44396_-	small heat shock protein sHSP20	NA	NA	NA	NA
WP_004152118.1\|44430_44712_-	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
WP_004118208.1\|44935_45199_-	hypothetical protein	NA	NA	NA	NA
WP_004118209.1\|45213_45477_+\|transposase	transposase	NA	NA	NA	NA
WP_014386148.1\|46678_47659_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	2.6e-184	98.8
WP_004152692.1\|48867_49737_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004152693.1\|49730_50741_-	phosphonate dehydrogenase PtxD	A0A1V0SBV6	Catovirus	1.4e-15	25.1
WP_004152694.1\|50749_51577_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_004152695.1\|51585_52449_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014386147.1\|52445_53273_-	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.0e-21	37.6
WP_001067855.1\|54128_54833_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001083725.1\|56506_57004_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001336345.1\|57115_57406_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|57411_58203_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000679427.1\|58366_58714_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|58707_59547_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376616.1\|59674_59878_+	hypothetical protein	NA	NA	NA	NA
WP_000184001.1\|60033_61239_+	chromate efflux transporter	NA	NA	NA	NA
WP_000130000.1\|61249_61555_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001067855.1\|62374_63079_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001553819.1\|63348_66246_+\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
WP_001398199.1\|66382_66784_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_000557619.1\|66716_66974_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_000616807.1\|67066_67720_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041947

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6365 : 13354

Salmonella_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001549892.1\|6365_6605_+	hypothetical protein	I6PD82	Cronobacter_phage	4.4e-21	55.1
WP_001067834.1\|6997_7702_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
WP_001393253.1\|8417_8750_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_000239590.1\|8796_9672_-	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_000608644.1\|9927_11190_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_001235713.1\|11753_12311_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000027057.1\|12493_13354_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP041946

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041946_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041946_1

4512866-4512960

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041946_1

>merge|NZ_CP041946|1|4512866-4512960|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP041946|1|1|4512866-4512960|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041946.1\|WP_002888329.1\|4518921_4520208_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP041946.1\|WP_002888332.1\|4515447_4516275_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP041946.1\|WP_002888324.1\|4521199_4522021_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP041946.1\|WP_004177424.1\|4501984_4503487_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP041946.1\|WP_004147026.1\|4516518_4518867_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP041946.1\|WP_002888337.1\|4514716_4515415_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP041946.1\|WP_023342998.1\|4500264_4501974_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP041946.1\|WP_004177431.1\|4522405_4523254_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP041946.1\|WP_002888320.1\|4523847_4524327_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP041946.1\|WP_002888323.1\|4522023_4522401_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP041946.1\|WP_002888373.1\|4498185_4498953_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP041946.1\|WP_002888347.1\|4510693_4511233_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP041946.1\|WP_004178574.1\|4507040_4509947_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP041946.1\|WP_004177427.1\|4509959_4510619_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP041946.1\|WP_023343000.1\|4520213_4521203_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP041946.1\|WP_004145972.1\|4499081_4499927_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP041946.1\|WP_023342999.1\|4504495_4506853_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP041946.1\|WP_016531719.1\|4503624_4504320_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP041946.1\|WP_002888345.1\|4511412_4512777_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP041946.1\|WP_023302315.1\|4513101_4514727_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827

Protein	Function_ID	Function_description	E-value
NZ_CP041946.1\|WP_002888329.1\|4518921_4520208_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP041946.1\|WP_002888332.1\|4515447_4516275_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP041946.1\|WP_002888324.1\|4521199_4522021_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP041946.1\|WP_004177424.1\|4501984_4503487_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP041946.1\|WP_004147026.1\|4516518_4518867_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP041946.1\|WP_002888337.1\|4514716_4515415_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP041946.1\|WP_023342998.1\|4500264_4501974_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP041946.1\|WP_004177431.1\|4522405_4523254_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP041946.1\|WP_002888320.1\|4523847_4524327_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP041946.1\|WP_002888323.1\|4522023_4522401_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP041946.1\|WP_002888373.1\|4498185_4498953_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP041946.1\|WP_002888347.1\|4510693_4511233_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP041946.1\|WP_004178574.1\|4507040_4509947_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP041946.1\|WP_004177427.1\|4509959_4510619_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.5539e-160
NZ_CP041946.1\|WP_023343000.1\|4520213_4521203_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP041946.1\|WP_004145972.1\|4499081_4499927_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP041946.1\|WP_023342999.1\|4504495_4506853_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP041946.1\|WP_016531719.1\|4503624_4504320_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP041946.1\|WP_002888345.1\|4511412_4512777_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP041946.1\|WP_023302315.1\|4513101_4514727_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	2.22281e-172

>NZ_CP041946.1|WP_002888345.1|4511412_4512777_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP041946.1|WP_002888347.1|4510693_4511233_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP041946.1|WP_004177427.1|4509959_4510619_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVALVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP041946.1|WP_004178574.1|4507040_4509947_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP041946.1|WP_023342999.1|4504495_4506853_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLSDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP041946.1|WP_016531719.1|4503624_4504320_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQRIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP041946.1|WP_004177424.1|4501984_4503487_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP041946.1|WP_023342998.1|4500264_4501974_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKENVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP041946.1|WP_004145972.1|4499081_4499927_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP041946.1|WP_002888373.1|4498185_4498953_-|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>NZ_CP041946.1|WP_023302315.1|4513101_4514727_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLELSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>NZ_CP041946.1|WP_002888337.1|4514716_4515415_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP041946.1|WP_002888332.1|4515447_4516275_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP041946.1|WP_004147026.1|4516518_4518867_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP041946.1|WP_002888329.1|4518921_4520208_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP041946.1|WP_023343000.1|4520213_4521203_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDLDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP041946.1|WP_002888324.1|4521199_4522021_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP041946.1|WP_002888323.1|4522023_4522401_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP041946.1|WP_004177431.1|4522405_4523254_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP041946.1|WP_002888320.1|4523847_4524327_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1359547 : 1418605

Klebsiella_phage(51.16%)

portal,head,capsid,protease,tRNA,integrase,holin,tail

attL 1382547:1382570|attR 1423598:1423621

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004145598.1\|1359547_1360966_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_002913435.1\|1361017_1361410_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002913434.1\|1361413_1361767_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_064173618.1\|1362388_1364560_+	EAL domain-containing protein	NA	NA	NA	NA
WP_002913423.1\|1364608_1365811_-	nucleoside permease NupC	NA	NA	NA	NA
WP_002913421.1\|1366157_1367399_+	Mn(2+) uptake NRAMP transporter MntH	NA	NA	NA	NA
WP_004899719.1\|1367456_1367810_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_023301632.1\|1367940_1368933_-	oxidoreductase	NA	NA	NA	NA
WP_023301633.1\|1369113_1370775_+	indolepyruvate decarboxylase	NA	NA	NA	NA
WP_004180794.1\|1370771_1372007_-	ion channel protein	NA	NA	NA	NA
WP_002913377.1\|1372270_1373236_+	glucokinase	NA	NA	NA	NA
WP_002913374.1\|1373289_1374027_-	response regulator transcription factor	A0A2R2ZGH8	Clostridioides_phage	1.5e-14	26.3
WP_004149230.1\|1374038_1375736_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-47	28.5
WP_002913372.1\|1376118_1377333_+	alanine transaminase	NA	NA	NA	NA
WP_099119320.1\|1377403_1377475_-	membrane protein YpdK	NA	NA	NA	NA
WP_004185022.1\|1377813_1379010_-	MFS transporter	NA	NA	NA	NA
WP_023301635.1\|1379006_1379465_-	nucleoside deaminase	A0A0B5J096	Pandoravirus	7.2e-12	33.1
WP_004149227.1\|1379597_1380506_+	transcriptional regulator CynR	A0A2P0ZL89	Lactobacillus_phage	4.6e-10	24.2
WP_023301636.1\|1380515_1381397_-	hypothetical protein	A0A2H4JEC4	uncultured_Caudovirales_phage	1.5e-05	56.8
WP_004174945.1\|1381763_1382246_-	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
1382547:1382570	attL	NA	NA	NA	NA
WP_009309602.1\|1382764_1383937_+\|integrase	site-specific integrase	A0A2R2Z2Y0	Escherichia_phage	4.7e-201	86.0
WP_061891355.1\|1383987_1385301_+	hypothetical protein	NA	NA	NA	NA
WP_071986589.1\|1385341_1385599_-	hypothetical protein	G3CFG7	Escherichia_phage	1.2e-13	61.8
WP_109027969.1\|1385534_1386194_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	7.3e-50	56.1
WP_004864289.1\|1386190_1386706_-	hypothetical protein	A0A0P0ZBM8	Stx2-converting_phage	2.9e-70	76.4
WP_145981949.1\|1386705_1387215_-	hypothetical protein	NA	NA	NA	NA
WP_109027971.1\|1387237_1387462_-	hypothetical protein	S4TVX5	Salmonella_phage	6.4e-14	50.8
WP_064188250.1\|1387776_1388637_-	hypothetical protein	A0A2H4J902	uncultured_Caudovirales_phage	2.3e-72	53.1
WP_004104278.1\|1389575_1389935_-	hypothetical protein	NA	NA	NA	NA
WP_109027972.1\|1390292_1390817_+	hypothetical protein	NA	NA	NA	NA
WP_109027973.1\|1390962_1391322_-	hypothetical protein	NA	NA	NA	NA
WP_109027974.1\|1391623_1392250_-	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	1.3e-43	47.3
WP_109027975.1\|1392350_1392566_+	cell division protein	NA	NA	NA	NA
WP_029497186.1\|1392588_1393104_+	hypothetical protein	A0A1C9II13	Salmonella_phage	1.5e-58	63.4
WP_070991649.1\|1393582_1393858_+	hypothetical protein	NA	NA	NA	NA
WP_070991647.1\|1393850_1395380_+	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	8.6e-203	66.9
WP_109027976.1\|1395376_1396348_+	DNA primase	A0A1B5FPA8	Escherichia_phage	1.7e-108	61.6
WP_050484678.1\|1396317_1396962_+	NinG family protein	A0A1W6JNX3	Morganella_phage	1.9e-39	54.3
WP_070991643.1\|1396958_1397600_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	1.9e-82	68.0
WP_070991641.1\|1397596_1398175_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	4.9e-50	57.2
WP_001018764.1\|1398325_1398565_+	hypothetical protein	NA	NA	NA	NA
WP_001294159.1\|1398730_1399117_+	membrane protein	A0A192Y8P2	Salmonella_phage	1.6e-57	90.6
WP_000243811.1\|1399103_1399385_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	4.8e-19	48.4
WP_070991639.1\|1399384_1400014_+	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	8.7e-85	73.9
WP_070991637.1\|1400016_1400292_+	hypothetical protein	NA	NA	NA	NA
WP_031592522.1\|1400510_1400999_+	hypothetical protein	NA	NA	NA	NA
WP_031592520.1\|1401083_1401473_+	hypothetical protein	Q1MVJ1	Enterobacteria_phage	8.7e-27	48.4
WP_065519868.1\|1401539_1401785_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	8.7e-33	93.8
WP_023339166.1\|1401903_1402389_+	hypothetical protein	NA	NA	NA	NA
WP_077270817.1\|1402460_1402751_+	HNH endonuclease	A0A286N2R3	Klebsiella_phage	3.8e-51	94.8
WP_017880219.1\|1402763_1402973_+	hypothetical protein	A0A286N2R4	Klebsiella_phage	7.0e-31	100.0
WP_004143905.1\|1403094_1403529_+	hypothetical protein	A0A286S1P9	Klebsiella_phage	6.2e-74	100.0
WP_155367665.1\|1405034_1406141_+\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	3.3e-212	99.5
WP_155367666.1\|1406146_1406827_+\|head,protease	HK97 family phage prohead protease	A0A286S1N1	Klebsiella_phage	1.3e-123	99.1
WP_058842800.1\|1406838_1408002_+\|capsid	phage major capsid protein	A0A286S1R4	Klebsiella_phage	3.1e-213	100.0
WP_155367667.1\|1408038_1408227_+	hypothetical protein	NA	NA	NA	NA
WP_017880223.1\|1408229_1408556_+\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	7.5e-56	100.0
WP_004143899.1\|1408616_1408814_+	hypothetical protein	A0A286S2A5	Klebsiella_phage	1.7e-26	100.0
WP_070991632.1\|1408815_1409148_+\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	9.0e-57	99.1
WP_004216814.1\|1409140_1409680_+	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	3.0e-94	99.4
WP_000561415.1\|1409676_1410042_+	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	3.9e-61	92.6
WP_000115125.1\|1410097_1410589_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	2.3e-88	100.0
WP_065806535.1\|1410632_1410986_+\|tail	phage tail protein	A0A286S1N4	Klebsiella_phage	1.1e-60	98.3
WP_001333686.1\|1411018_1411282_+	hypothetical protein	A0A286S1P2	Klebsiella_phage	6.9e-44	98.9
WP_077270814.1\|1411278_1411710_+	hypothetical protein	A0A286S1N7	Klebsiella_phage	2.2e-63	94.3
WP_070991631.1\|1411771_1414198_+\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	0.0e+00	83.5
WP_001018848.1\|1414197_1414677_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.9e-76	78.6
WP_064159804.1\|1414663_1415146_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	1.7e-56	67.7
WP_029497207.1\|1415153_1415540_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	4.7e-33	50.8
WP_109027941.1\|1415536_1418605_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	66.2
1423598:1423621	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1645285 : 1652190

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|1645285_1646149_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004180550.1\|1646159_1646933_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_002912636.1\|1647173_1648067_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1648312_1649674_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1649992_1650715_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004149058.1\|1650711_1652190_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_3

1765831 : 1807781

Klebsiella_phage(48.0%)

portal,terminase,head,capsid,protease,integrase,holin,tail

attL 1765657:1765716|attR 1803254:1803318

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1765657:1765716	attL	NA	NA	NA	NA
WP_101516282.1\|1765831_1766824_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	8.4e-175	87.2
WP_032408630.1\|1766825_1767053_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	2.4e-29	78.4
WP_142368272.1\|1767360_1767564_-	hypothetical protein	NA	NA	NA	NA
WP_101516285.1\|1768105_1768582_-	hypothetical protein	A0A077SLK5	Escherichia_phage	3.8e-16	50.0
WP_101516286.1\|1768578_1768785_-	hypothetical protein	R9TRD3	Aeromonas_phage	2.1e-32	98.5
WP_101516287.1\|1768781_1769243_-	hypothetical protein	R9TME7	Aeromonas_phage	4.0e-10	35.5
WP_101516288.1\|1769370_1770156_-	hypothetical protein	C7BGF1	Burkholderia_phage	3.8e-61	51.8
WP_065954001.1\|1770155_1770455_-	hypothetical protein	K7PJS4	Enterobacterial_phage	5.5e-13	46.7
WP_101516289.1\|1770544_1771462_-	hypothetical protein	A0A1W6JP69	Morganella_phage	2.6e-45	36.2
WP_023317570.1\|1772255_1772951_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.5e-87	71.3
WP_001191665.1\|1773048_1773291_+	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.3e-25	80.3
WP_004213338.1\|1773325_1773787_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_058842804.1\|1774191_1775106_+	transcriptional regulator	H2DE83	Erwinia_phage	1.4e-30	60.6
WP_049026353.1\|1775102_1775912_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.0e-109	69.3
WP_000779146.1\|1775921_1776299_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.3e-48	73.6
WP_058842803.1\|1776311_1777292_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.4e-134	66.9
WP_004899672.1\|1777305_1777884_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	7.6e-51	57.2
WP_031281242.1\|1778196_1778454_+	hypothetical protein	A0A286N2Q3	Klebsiella_phage	2.8e-42	98.8
WP_032416155.1\|1778359_1778806_-	hypothetical protein	NA	NA	NA	NA
WP_017145563.1\|1779368_1779764_+	membrane protein	K7PHB9	Enterobacterial_phage	2.6e-63	98.5
WP_019705280.1\|1779750_1780032_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	3.9e-37	80.6
WP_058842802.1\|1780031_1780661_+	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	1.7e-104	89.0
WP_020317342.1\|1780668_1780944_+	hypothetical protein	G8C7W1	Escherichia_phage	1.4e-15	52.8
WP_032420712.1\|1780894_1781086_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	3.2e-22	88.1
WP_032426434.1\|1781117_1781318_+	hypothetical protein	K7PHC3	Enterobacterial_phage	7.9e-16	65.1
WP_004216876.1\|1781382_1781628_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.0e-33	96.3
WP_023301206.1\|1781699_1781906_+	DUF551 domain-containing protein	A0A286N2R2	Klebsiella_phage	5.1e-34	97.1
WP_017880218.1\|1781977_1782268_+	HNH endonuclease	A0A286N2R3	Klebsiella_phage	1.4e-53	99.0
WP_017880219.1\|1782280_1782490_+	hypothetical protein	A0A286N2R4	Klebsiella_phage	7.0e-31	100.0
WP_004143905.1\|1782611_1783046_+	hypothetical protein	A0A286S1P9	Klebsiella_phage	6.2e-74	100.0
WP_004143904.1\|1783055_1784588_+\|terminase	terminase	A0A286S1M9	Klebsiella_phage	3.9e-296	100.0
WP_017880221.1\|1784590_1785868_+\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	6.2e-247	100.0
WP_077254200.1\|1785873_1786554_+\|head,protease	HK97 family phage prohead protease	A0A286S1N1	Klebsiella_phage	6.0e-124	99.6
WP_058842800.1\|1786565_1787729_+\|capsid	phage major capsid protein	A0A286S1R4	Klebsiella_phage	3.1e-213	100.0
WP_044067369.1\|1787765_1788008_+	hypothetical protein	NA	NA	NA	NA
WP_017880223.1\|1787955_1788282_+\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	7.5e-56	100.0
WP_004143899.1\|1788342_1788540_+	hypothetical protein	A0A286S2A5	Klebsiella_phage	1.7e-26	100.0
WP_004184710.1\|1788541_1788874_+\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	3.1e-57	100.0
WP_000763233.1\|1788866_1789406_+	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	1.0e-94	100.0
WP_000561415.1\|1789402_1789768_+	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	3.9e-61	92.6
WP_004899623.1\|1790141_1790525_+	hypothetical protein	A0A286S1N4	Klebsiella_phage	1.4e-53	86.3
WP_004899621.1\|1790527_1790791_+	hypothetical protein	A0A286S1P2	Klebsiella_phage	7.9e-40	90.8
WP_058842799.1\|1790854_1791232_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_058842798.1\|1791293_1793840_+\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	0.0e+00	74.6
WP_004899614.1\|1793839_1794319_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.7e-93	98.7
WP_032412796.1\|1794305_1794788_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	1.6e-83	96.9
WP_017880229.1\|1794797_1795178_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	4.6e-73	100.0
WP_058842797.1\|1795174_1798234_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	91.0
WP_040181868.1\|1800279_1801080_+	hypothetical protein	NA	NA	NA	NA
WP_074177881.1\|1801091_1801274_+	helix-turn-helix domain-containing protein	A0A286S1P7	Klebsiella_phage	1.5e-18	88.9
WP_001333465.1\|1801351_1801774_+	hypothetical protein	K7P834	Enterobacteria_phage	2.8e-26	45.3
WP_074376103.1\|1802611_1802983_+	hypothetical protein	K7PGV5	Enterobacterial_phage	9.2e-26	51.9
WP_002911596.1\|1803588_1804734_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.1e-117	58.7
1803254:1803318	attR	NA	NA	NA	NA
WP_004151461.1\|1805272_1805554_+	hypothetical protein	NA	NA	NA	NA
WP_009307518.1\|1805596_1806304_+	phosphohydrolase	S4W232	Pandoravirus	3.7e-07	27.3
WP_009484430.1\|1806347_1807781_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	4.0e-101	53.0

DBSCAN-SWA_4

1938446 : 2044039

115

Escherichia_phage(16.67%)

portal,terminase,transposase,head,capsid,protease,lysis,plate,tRNA,integrase,tail

attL 1945123:1945141|attR 1981761:1981779

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002910830.1\|1938446_1939193_+\|protease	proteasome-type protease	NA	NA	NA	NA
WP_023285302.1\|1939604_1940618_+	fatty acid desaturase	NA	NA	NA	NA
WP_004189318.1\|1940610_1941411_+	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_004145488.1\|1941448_1941571_-	nitrilotriacetate monooxygenase	NA	NA	NA	NA
WP_002910764.1\|1942188_1943130_+	transcriptional regulator TdcA	NA	NA	NA	NA
WP_002910762.1\|1943223_1944213_+	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA
WP_004145486.1\|1944238_1945570_+	threonine/serine transporter TdcC	NA	NA	NA	NA
1945123:1945141	attL	NA	NA	NA	NA
WP_002910759.1\|1945597_1946806_+	propionate kinase	NA	NA	NA	NA
WP_009307576.1\|1946834_1949129_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	2.8e-157	41.7
WP_009484368.1\|1949559_1950675_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009307577.1\|1950784_1951699_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_004148804.1\|1951708_1952995_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_004148803.1\|1952991_1953867_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	9.5e-05	41.5
WP_004175491.1\|1953863_1954583_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-11	26.0
WP_002910720.1\|1954588_1955482_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004148802.1\|1955765_1957409_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	5.7e-136	50.4
WP_002910717.1\|1957458_1957935_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_009307580.1\|1958033_1958960_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004175494.1\|1959263_1960559_+	MFS transporter	Q6JIH2	Burkholderia_virus	9.6e-62	36.8
WP_032413763.1\|1960573_1961380_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_021312745.1\|1961620_1962883_-\|integrase	site-specific integrase	A0A286S1S8	Klebsiella_phage	1.7e-233	95.0
WP_040181674.1\|1962925_1963171_-	excisionase family protein	A0A286S2A4	Klebsiella_phage	1.9e-35	92.1
WP_009483816.1\|1963174_1963393_-	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.6e-12	52.2
WP_032431536.1\|1963389_1963599_-	hypothetical protein	NA	NA	NA	NA
WP_040218332.1\|1963595_1963787_-	DUF1382 family protein	G9L698	Escherichia_phage	1.3e-12	64.4
WP_110225232.1\|1963783_1964548_-	hypothetical protein	Q71T76	Escherichia_phage	2.3e-71	58.3
WP_040181679.1\|1964764_1965535_-	hypothetical protein	D5LH17	Escherichia_phage	3.2e-65	51.0
WP_024264482.1\|1965531_1966059_-	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.3e-57	62.2
WP_016529279.1\|1966055_1966214_-	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	6.7e-10	58.8
WP_040181683.1\|1966210_1966897_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	4.8e-113	90.6
WP_124072215.1\|1966889_1967339_-	hypothetical protein	A0A221SAP1	Ralstonia_phage	1.0e-18	52.6
WP_040181685.1\|1967506_1968352_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	2.6e-68	58.8
WP_040181687.1\|1968367_1968652_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	4.3e-39	78.7
WP_008807814.1\|1968732_1968939_-	phage encoded cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	1.4e-31	94.1
WP_039110713.1\|1969469_1970066_-	helix-turn-helix transcriptional regulator	K7P850	Enterobacteria_phage	9.0e-07	27.1
WP_038435003.1\|1970174_1970387_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_065802491.1\|1970407_1970692_+	hypothetical protein	K7PHN8	Enterobacterial_phage	3.7e-19	55.1
WP_040218315.1\|1970726_1971524_+	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	2.5e-89	71.5
WP_065802493.1\|1971520_1972417_+	replication protein	K7PGT1	Enterobacteria_phage	1.9e-64	47.5
WP_040182092.1\|1972413_1973262_+	AAA family ATPase	K7PLU3	Enterobacteria_phage	1.2e-89	60.8
WP_040182091.1\|1973258_1973552_+	protein ren	M1FPD5	Enterobacteria_phage	2.1e-25	62.4
WP_052450983.1\|1973788_1974241_+	hypothetical protein	R9TME7	Aeromonas_phage	4.4e-14	40.6
WP_040181701.1\|1974237_1974498_+	DUF4752 family protein	T1S9K2	Salmonella_phage	1.6e-29	75.6
WP_004141386.1\|1975029_1975242_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_087750241.1\|1975870_1976284_+	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	1.1e-11	34.6
WP_004191566.1\|1976689_1977286_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.2e-56	54.3
WP_086551365.1\|1977291_1977462_+	NinE family protein	G8C7V4	Escherichia_phage	8.2e-14	69.6
WP_155367673.1\|1977454_1978063_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	3.0e-50	64.2
WP_065807619.1\|1978059_1978290_+	hypothetical protein	NA	NA	NA	NA
WP_004136182.1\|1978286_1978427_+	YlcG family protein	NA	NA	NA	NA
WP_065807620.1\|1978423_1979113_+	antiterminator	I6PDF8	Cronobacter_phage	1.1e-56	54.9
WP_004146347.1\|1979887_1980202_+	hypothetical protein	H6WRZ3	Salmonella_phage	6.3e-44	86.1
WP_155367674.1\|1980204_1980708_+	glycoside hydrolase family protein	A0A1V0E5Q7	Salmonella_phage	1.1e-74	78.4
WP_155367675.1\|1980704_1981166_+\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	9.0e-39	57.2
WP_001165319.1\|1981198_1981603_+	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_155367676.1\|1981679_1982321_+	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	3.7e-06	32.1
1981761:1981779	attR	NA	NA	NA	NA
WP_064141836.1\|1982562_1983144_+	hypothetical protein	NA	NA	NA	NA
WP_143887651.1\|1983085_1985212_+\|terminase	terminase	A0A0C5ABH4	Bacteriophage	2.3e-97	35.0
WP_000483310.1\|1985220_1985484_+\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
WP_143887650.1\|1985483_1987118_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	1.2e-88	35.2
WP_021543305.1\|1987114_1987981_+	S49 family peptidase	A0A248XD65	Klebsiella_phage	1.4e-48	48.1
WP_143887649.1\|1987982_1988573_+	hypothetical protein	NA	NA	NA	NA
WP_021543307.1\|1988572_1988980_+\|head	head decoration protein	NA	NA	NA	NA
WP_023281756.1\|1989078_1990128_+\|capsid	major capsid protein	V5Q8G6	Xylella_phage	5.6e-52	34.0
WP_021543309.1\|1990129_1990507_+	hypothetical protein	NA	NA	NA	NA
WP_021543310.1\|1990511_1990871_+	hypothetical protein	NA	NA	NA	NA
WP_021543311.1\|1990867_1991413_+	hypothetical protein	NA	NA	NA	NA
WP_021543312.1\|1991415_1991601_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_021543313.1\|1991597_1993109_+	hypothetical protein	B5TK67	Pseudomonas_phage	4.1e-104	44.6
WP_000896639.1\|1993112_1993484_+\|tail	phage tail protein	NA	NA	NA	NA
WP_000818812.1\|1993485_1993764_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_088224442.1\|1993905_1995759_+	hypothetical protein	A0A172JGI1	Citrobacter_phage	3.1e-21	45.3
WP_053287019.1\|1995805_1997206_+	hypothetical protein	A0A2P9JZK2	Alteromonadaceae_phage	4.0e-05	39.1
WP_000102291.1\|1997202_1998288_+\|tail	tail protein	Q8SBG7	Shigella_phage	3.3e-39	30.7
WP_001075147.1\|1998284_1998866_+\|plate	phage baseplate assembly protein	NA	NA	NA	NA
WP_001280393.1\|1998862_1999312_+	hypothetical protein	A0A0C4UR04	Shigella_phage	5.6e-17	41.2
WP_155367677.1\|1999301_2000450_+\|plate	phage baseplate protein	B6SBU6	Clostridium_virus	3.8e-09	27.4
WP_000051916.1\|2000446_2001121_+	YmfQ family protein	NA	NA	NA	NA
WP_001310746.1\|2001147_2001933_+	hypothetical protein	NA	NA	NA	NA
WP_155367678.1\|2001911_2003003_-	acyltransferase family protein	NA	NA	NA	NA
WP_155367697.1\|2003367_2005362_+	hypothetical protein	A0A286S1P0	Klebsiella_phage	8.5e-25	27.2
WP_071854268.1\|2005371_2006172_+	hypothetical protein	NA	NA	NA	NA
WP_000343760.1\|2006319_2007540_+\|transposase	ISL3-like element ISKox3 family transposase	NA	NA	NA	NA
WP_040181289.1\|2007601_2007841_+	hypothetical protein	K7P7N3	Enterobacteria_phage	4.2e-16	51.9
WP_074422971.1\|2007950_2008157_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.9e-09	49.2
WP_048289904.1\|2009131_2009614_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_002910654.1\|2009805_2010504_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.6e-05	27.2
WP_004899028.1\|2010529_2011114_-	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_002910650.1\|2011183_2011513_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_009307582.1\|2012078_2013419_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004175498.1\|2013415_2014069_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_009307583.1\|2014072_2015770_+	OmpA family protein	NA	NA	NA	NA
WP_009307584.1\|2016228_2018856_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.3e-17	31.5
WP_023342696.1\|2018858_2020886_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JIA8	uncultured_Caudovirales_phage	2.6e-74	31.6
WP_004148791.1\|2020900_2021797_+	hypothetical protein	NA	NA	NA	NA
WP_032413757.1\|2022289_2022697_+	hypothetical protein	NA	NA	NA	NA
WP_029499423.1\|2022722_2022980_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_040181245.1\|2022984_2024196_+	hypothetical protein	NA	NA	NA	NA
WP_029498250.1\|2024660_2027627_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_040181246.1\|2027760_2029524_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002910494.1\|2029523_2030570_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_019704158.1\|2030544_2031087_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004152261.1\|2031089_2031533_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_048289900.1\|2031552_2032968_+	membrane protein	NA	NA	NA	NA
WP_002910453.1\|2033099_2034014_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_155367679.1\|2034097_2034427_+	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_002910443.1\|2034507_2035599_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_009307591.1\|2035716_2036301_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_002910437.1\|2036573_2036849_+	stress-induced protein YchH	NA	NA	NA	NA
WP_023301802.1\|2037069_2038116_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_004189412.1\|2038117_2039797_-	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	1.0e-23	23.4
WP_002910407.1\|2039921_2040869_-	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	2.3e-44	37.5
WP_004891134.1\|2041052_2041904_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_002910405.1\|2041900_2042512_-	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_004891136.1\|2042782_2044039_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA

DBSCAN-SWA_5

2705499 : 2711929

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040182017.1\|2705499_2706588_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.8e-210	99.7
WP_004176262.1\|2706674_2706935_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_001620095.1\|2707232_2708093_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_002210513.1\|2708113_2708875_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|2709136_2710039_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_032423485.1\|2710050_2711316_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
WP_002210516.1\|2711308_2711929_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_6

2982202 : 3003445

Pseudomonas_phage(30.0%)

holin,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077264109.1\|2982202_2985118_-\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	4.9e-90	34.2
WP_129693861.1\|2985697_2986096_-	hypothetical protein	NA	NA	NA	NA
WP_012967913.1\|2986163_2986361_-	hypothetical protein	NA	NA	NA	NA
WP_012967912.1\|2986498_2986981_-	hypothetical protein	NA	NA	NA	NA
WP_048289860.1\|2987035_2988208_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
WP_012967910.1\|2988231_2988624_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_012967909.1\|2988620_2989172_-	hypothetical protein	G8C7Q1	Escherichia_phage	5.9e-29	39.9
WP_048289859.1\|2989173_2989557_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	1.6e-20	43.7
WP_072072127.1\|2989543_2989777_-	hypothetical protein	A0A1V0E8A3	Vibrio_phage	6.4e-09	49.2
WP_048289858.1\|2989786_2990041_-	hypothetical protein	J9Q7U0	Salmonella_phage	3.0e-20	51.2
WP_048289857.1\|2990042_2990438_-	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	4.3e-13	43.3
WP_133060713.1\|2990478_2990751_-	hypothetical protein	NA	NA	NA	NA
WP_048289856.1\|2990759_2991713_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	6.5e-132	74.4
WP_048289855.1\|2991723_2992503_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.7e-67	64.0
WP_048289854.1\|2993015_2994128_-	phage Mu F like family protein	I6PD76	Cronobacter_phage	1.6e-110	55.1
WP_048267898.1\|2994111_2995512_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	2.4e-127	53.5
WP_016946682.1\|2995513_2996827_-\|terminase	terminase	A0A0S2SYF1	Pseudomonas_phage	2.2e-183	73.6
WP_048289853.1\|2996810_2997806_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-38	45.5
WP_004190672.1\|2998894_2999170_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
WP_048289852.1\|2999166_2999511_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.6e-38	79.8
WP_004184488.1\|2999507_3000047_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	2.3e-102	100.0
WP_024176410.1\|3000043_3000343_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	4.5e-39	83.8
WP_048289851.1\|3001100_3001922_-	antitermination protein	K7PKS8	Enterobacteria_phage	5.1e-85	60.6
WP_086528373.1\|3001918_3002059_-	YlcG family protein	NA	NA	NA	NA
WP_048289850.1\|3002055_3002637_-	protein ninG	E7C9S3	Salmonella_phage	2.7e-40	44.8
WP_086528372.1\|3002845_3003445_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	3.8e-90	79.4

DBSCAN-SWA_7

3007877 : 3023509

Salmonella_phage(50.0%)

integrase

attL 3006635:3006648|attR 3023798:3023811

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3006635:3006648	attL	NA	NA	NA	NA
WP_032445505.1\|3007877_3008078_-	hypothetical protein	A0A1U8QWK2	Salmonella_phage	3.2e-09	57.5
WP_032445503.1\|3008553_3008790_-	hypothetical protein	A0A2R2Z309	Escherichia_phage	7.1e-32	90.7
WP_019705292.1\|3008782_3008986_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	2.6e-30	92.5
WP_032423776.1\|3008982_3009351_-	DUF977 family protein	H6WRX9	Salmonella_phage	4.9e-11	43.0
WP_004215885.1\|3009343_3010087_-	replication protein P	A0A0M3ULE2	Salmonella_phage	3.1e-65	55.2
WP_004215886.1\|3010083_3011004_-	hypothetical protein	K7PGZ0	Enterobacteria_phage	1.7e-92	61.3
WP_032445502.1\|3011354_3011891_-	hypothetical protein	M9NZI6	Enterobacteria_phage	6.3e-60	68.9
WP_023320775.1\|3011893_3012121_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	3.4e-15	50.0
WP_050485525.1\|3012225_3012660_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	2.3e-15	39.0
WP_101516259.1\|3012843_3012942_+	hypothetical protein	NA	NA	NA	NA
WP_004179600.1\|3013048_3013240_+	YebW family protein	NA	NA	NA	NA
WP_012967861.1\|3013248_3013404_+	DNA breaking-rejoining protein	H6WRX3	Salmonella_phage	1.2e-14	75.0
WP_048289849.1\|3013541_3016580_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	1.0e-292	57.2
WP_048289848.1\|3016592_3017702_+	recombinase RecT	H6WRX0	Salmonella_phage	9.4e-183	85.9
WP_004190719.1\|3017736_3018075_+	hypothetical protein	NA	NA	NA	NA
WP_016160779.1\|3018067_3018679_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	4.9e-40	75.3
WP_048289847.1\|3018675_3018984_+	hypothetical protein	I6PD68	Cronobacter_phage	4.6e-23	55.9
WP_004892750.1\|3018991_3019231_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	8.0e-23	70.1
WP_086528371.1\|3019451_3020639_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	4.2e-120	52.2
WP_004151901.1\|3020815_3021706_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_004140266.1\|3021705_3022698_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|3022699_3023509_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
3023798:3023811	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3142881 : 3210521

Enterobacteria_phage(51.43%)

portal,terminase,head,plate,capsid,tRNA,integrase,tail

attL 3148109:3148126|attR 3185285:3185302

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004892876.1\|3142881_3143382_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3143498_3143945_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_002901073.1\|3143928_3144720_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004148041.1\|3144821_3146006_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|3146037_3146730_-	CTP synthase	NA	NA	NA	NA
WP_020802835.1\|3146875_3147385_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_004150779.1\|3147371_3147728_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_004176548.1\|3147717_3147957_-	DUF333 domain-containing protein	NA	NA	NA	NA
3148109:3148126	attL	NA	NA	NA	NA
WP_004213128.1\|3148221_3148473_-	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
WP_040181406.1\|3148516_3149656_-	phage late control D family protein	B9A7A9	Serratia_phage	9.4e-146	72.3
WP_040181409.1\|3149810_3150983_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	5.0e-158	70.7
WP_004216461.1\|3150982_3151498_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.2e-57	61.2
WP_004131585.1\|3151543_3151861_+	hypothetical protein	B9A7B2	Serratia_phage	1.0e-17	54.8
WP_075604421.1\|3151860_3152019_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.5e-11	63.3
WP_040181412.1\|3152005_3154981_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	2.0e-219	46.4
WP_040181415.1\|3154996_3155470_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	6.6e-53	66.9
WP_040181417.1\|3155933_3156596_-	hypothetical protein	NA	NA	NA	NA
WP_052450975.1\|3156613_3157837_-	DUF262 domain-containing protein	A0A1V0S9I8	Catovirus	7.8e-05	27.5
WP_040181419.1\|3158436_3159534_-\|tail	tail fiber protein	G4KKN6	Yersinia_phage	5.2e-08	47.8
WP_023339950.1\|3159533_3159746_-	hypothetical protein	NA	NA	NA	NA
WP_040181424.1\|3159742_3162769_-\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	6.4e-24	40.7
WP_023300878.1\|3162758_3163682_-	hypothetical protein	A0A0A7NPY5	Enterobacteria_phage	7.6e-53	43.6
WP_040181426.1\|3163683_3164034_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	1.8e-23	58.2
WP_009486481.1\|3164030_3164618_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	6.9e-60	60.5
WP_020316957.1\|3164614_3165250_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.6e-57	51.9
WP_040181428.1\|3165246_3165714_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	4.5e-46	58.8
WP_124072220.1\|3165714_3165990_-	peptidase	NA	NA	NA	NA
WP_031593580.1\|3165895_3166225_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_023339943.1\|3166236_3166782_-	lysozyme	Q1I0Z1	Pasteurella_virus	6.3e-31	43.0
WP_004213110.1\|3166778_3167063_-	hypothetical protein	NA	NA	NA	NA
WP_004131559.1\|3167053_3167254_-\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
WP_040181431.1\|3167253_3167769_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	2.7e-39	48.8
WP_040181433.1\|3167881_3168739_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	9.8e-71	61.3
WP_023328071.1\|3168788_3169823_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	3.6e-96	50.0
WP_040181436.1\|3169832_3170672_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	4.3e-95	66.3
WP_040181438.1\|3170828_3172556_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	1.0e-228	67.1
WP_048289843.1\|3172549_3173611_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	9.1e-143	68.1
WP_040181440.1\|3174455_3175247_+	hypothetical protein	NA	NA	NA	NA
WP_040181442.1\|3175246_3177517_+	helicase UvrD	NA	NA	NA	NA
WP_040181444.1\|3180406_3181363_-	DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	1.5e-83	54.4
WP_023329528.1\|3181595_3182162_-	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	2.8e-13	33.2
WP_004213098.1\|3182158_3182383_-	hypothetical protein	NA	NA	NA	NA
WP_023329526.1\|3182451_3182724_-	hypothetical protein	NA	NA	NA	NA
WP_040181449.1\|3182739_3183117_-	hypothetical protein	NA	NA	NA	NA
WP_004216643.1\|3183132_3183351_-	hypothetical protein	A0A0M5M1I3	Salmonella_phage	3.6e-06	49.1
WP_020806130.1\|3183371_3183650_-	regulatory protein Cox	Q1JS60	Enterobacteria_phage	6.2e-43	88.9
WP_004213095.1\|3183770_3184070_+	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	6.5e-38	77.8
WP_040181453.1\|3184185_3185169_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	1.4e-150	79.8
WP_004176549.1\|3185433_3186447_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
3185285:3185302	attR	NA	NA	NA	NA
WP_004150782.1\|3186504_3186606_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004892898.1\|3186605_3186680_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3186797_3186923_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|3186982_3187246_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|3187376_3188015_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_023302064.1\|3188104_3189019_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004150784.1\|3189680_3190724_-	type II asparaginase	NA	NA	NA	NA
WP_004140494.1\|3191026_3192235_+	HD domain-containing protein	NA	NA	NA	NA
WP_023302065.1\|3192308_3194093_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_021313530.1\|3194099_3194990_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023302066.1\|3195110_3196619_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_004150790.1\|3196929_3197616_-	EAL domain-containing protein	NA	NA	NA	NA
WP_153236426.1\|3198065_3198254_+	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|3198232_3198865_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|3199431_3199629_+	hypothetical protein	NA	NA	NA	NA
WP_004183659.1\|3199744_3200755_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004140511.1\|3200751_3202158_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004179357.1\|3202213_3203101_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|3203117_3203624_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004148027.1\|3203650_3204145_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3204235_3204421_-	general stress protein	NA	NA	NA	NA
WP_137013050.1\|3204640_3204829_+	hypothetical protein	NA	NA	NA	NA
WP_004140529.1\|3205044_3206238_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|3206350_3206578_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_019704434.1\|3206598_3206784_-	hypothetical protein	NA	NA	NA	NA
WP_004150797.1\|3207026_3207350_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004150798.1\|3207342_3207735_+	amino acid-binding protein	NA	NA	NA	NA
WP_004213085.1\|3207731_3208445_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|3208717_3208870_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_040200296.1\|3209024_3210521_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	2.8e-137	69.0

DBSCAN-SWA_9

3219586 : 3256354

Enterobacteria_phage(31.25%)

portal,terminase,protease,tRNA,integrase,holin,tail

attL 3206874:3206888|attR 3254165:3254179

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3206874:3206888	attL	NA	NA	NA	NA
WP_016530340.1\|3219586_3220177_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	2.5e-81	77.0
WP_023342884.1\|3220208_3220919_-	hypothetical protein	Q6UAW4	Klebsiella_phage	1.1e-136	90.7
WP_016530342.1\|3220920_3221676_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	1.3e-130	84.1
WP_023342885.1\|3221672_3222020_-\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	4.7e-40	67.8
WP_134917911.1\|3222024_3225168_-\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	0.0e+00	73.4
WP_071609142.1\|3225151_3225466_-\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	5.0e-41	75.0
WP_072216832.1\|3225486_3225915_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	2.7e-37	60.0
WP_016530349.1\|3225925_3226669_-\|tail	phage tail protein	K7PKX6	Enterobacterial_phage	1.7e-111	83.0
WP_016530350.1\|3226677_3227079_-\|tail	minor tail family protein	K7PHM6	Enterobacterial_phage	2.7e-55	75.6
WP_032416997.1\|3227075_3227654_-\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	1.3e-79	81.2
WP_023342887.1\|3227657_3227933_-	hypothetical protein	K7PH43	Enterobacteria_phage	1.1e-23	57.1
WP_032416996.1\|3227925_3228252_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	1.4e-33	65.7
WP_134917912.1\|3228335_3230357_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	81.7
WP_016530355.1\|3230307_3231810_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	6.2e-246	83.0
WP_023342890.1\|3231809_3232022_-	hypothetical protein	A5LH28	Enterobacteria_phage	2.9e-24	80.0
WP_016530357.1\|3232018_3234121_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	84.0
WP_023342892.1\|3234120_3234609_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	1.3e-72	87.7
WP_077273936.1\|3234840_3235155_-	hypothetical protein	Q6UAS0	Klebsiella_phage	7.5e-29	62.8
WP_131082162.1\|3235259_3235568_-	hypothetical protein	NA	NA	NA	NA
WP_131066636.1\|3235649_3236126_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_131066624.1\|3236158_3236698_-	lysozyme	K7PM52	Enterobacteria_phage	1.2e-74	73.6
WP_075208973.1\|3236669_3236939_-\|holin	holin	K7P6H9	Enterobacteria_phage	4.2e-36	84.8
WP_131066623.1\|3237092_3237944_-	hypothetical protein	NA	NA	NA	NA
WP_131082163.1\|3238102_3238801_-	antitermination protein	NA	NA	NA	NA
WP_131082164.1\|3238821_3239880_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.3e-106	53.0
WP_131082165.1\|3240079_3240472_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	8.0e-12	36.6
WP_104454100.1\|3240512_3240803_-	hypothetical protein	H6WRY6	Salmonella_phage	6.1e-17	56.9
WP_110540614.1\|3240814_3241048_-	DinI family protein	K7PM44	Enterobacteria_phage	1.7e-25	71.1
WP_100682201.1\|3241758_3242730_-	macro domain-containing protein	A0A173GFD0	Erwinia_phage	2.1e-16	37.5
WP_094945273.1\|3242734_3243316_-	DUF4433 domain-containing protein	NA	NA	NA	NA
WP_094945274.1\|3243942_3244383_-	hypothetical protein	NA	NA	NA	NA
WP_094945275.1\|3244396_3244861_-	replication protein	A0A0U2JGJ0	Escherichia_phage	1.7e-61	69.5
WP_104457101.1\|3244853_3245837_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	6.2e-45	55.8
WP_057171835.1\|3245888_3246443_-	hypothetical protein	NA	NA	NA	NA
WP_023342905.1\|3246445_3246658_-	helix-turn-helix transcriptional regulator	A0A077K9X2	Edwardsiella_phage	1.9e-15	57.6
WP_032428184.1\|3246763_3247144_+	helix-turn-helix domain-containing protein	A0A0M4REM4	Salmonella_phage	1.9e-10	37.7
WP_040234937.1\|3247484_3247799_-	hypothetical protein	NA	NA	NA	NA
WP_016160636.1\|3248189_3248384_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|3248426_3248771_+	transcriptional regulator	NA	NA	NA	NA
WP_134917915.1\|3248912_3251051_+	exonuclease	S4TNL0	Salmonella_phage	2.5e-99	42.9
WP_012542206.1\|3251103_3251349_+	excisionase	NA	NA	NA	NA
WP_110540615.1\|3251329_3252457_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	2.6e-119	58.7
WP_004150800.1\|3252574_3253825_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_004150801.1\|3254065_3254716_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
3254165:3254179	attR	NA	NA	NA	NA
WP_004150802.1\|3254732_3255191_+	NUDIX hydrolase	NA	NA	NA	NA
WP_004150803.1\|3255247_3256354_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_10

3495379 : 3504853

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_114504563.1\|3495379_3497101_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	3.1e-15	34.8
WP_023302126.1\|3497145_3497847_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3498200_3498419_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3498549_3500829_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3500859_3501177_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3501502_3501724_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|3501800_3503741_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3503737_3504853_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_11

3990612 : 4038765

Cronobacter_phage(27.66%)

terminase,head,lysis,tRNA,integrase

attL 3985540:3985586|attR 4035836:4035882

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3985540:3985586	attL	NA	NA	NA	NA
WP_040186451.1\|3990612_3993090_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	1.4e-197	45.3
WP_040181295.1\|3993076_3993472_-	hypothetical protein	F1C5F2	Cronobacter_phage	4.7e-36	54.8
WP_004196571.1\|3993468_3993939_-	hypothetical protein	R9TPR6	Aeromonas_phage	1.2e-27	40.4
WP_016531189.1\|3993938_3994358_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	1.8e-30	47.8
WP_071854269.1\|3994528_3994942_+	hypothetical protein	G0ZNE8	Cronobacter_phage	5.0e-65	89.8
WP_040181302.1\|3994961_3995141_-	hypothetical protein	NA	NA	NA	NA
WP_058842809.1\|3995181_3998622_-	tape measure protein	Q5G8W8	Enterobacteria_phage	7.3e-133	40.5
WP_029884072.1\|3998716_3999220_-	hypothetical protein	NA	NA	NA	NA
WP_074160392.1\|3999322_3999550_-	hypothetical protein	NA	NA	NA	NA
WP_129693860.1\|3999644_3999962_+	hypothetical protein	NA	NA	NA	NA
WP_023328739.1\|4000013_4000334_-	hypothetical protein	NA	NA	NA	NA
WP_048294323.1\|4000816_4001290_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	2.1e-14	40.6
WP_072061015.1\|4001326_4001758_-	hypothetical protein	NA	NA	NA	NA
WP_129312537.1\|4001768_4002134_-	hypothetical protein	NA	NA	NA	NA
WP_049182521.1\|4002130_4002436_-	hypothetical protein	NA	NA	NA	NA
WP_004178855.1\|4002740_4003424_-	hypothetical protein	G0ZNE7	Cronobacter_phage	2.3e-75	59.7
WP_048294321.1\|4003476_4004229_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	1.7e-42	41.8
WP_048294319.1\|4004297_4004690_-	hypothetical protein	G0ZNE4	Cronobacter_phage	2.0e-34	51.9
WP_004151265.1\|4004686_4005112_-	hypothetical protein	R9TPP7	Aeromonas_phage	5.1e-28	47.9
WP_058842810.1\|4005114_4005477_-	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	3.3e-20	49.2
WP_038434988.1\|4005476_4005650_-	hypothetical protein	Q5G8X7	Enterobacteria_phage	1.2e-12	51.8
WP_058842811.1\|4005649_4006030_-	hypothetical protein	F1C5E2	Cronobacter_phage	1.8e-29	56.1
WP_058842812.1\|4006032_4006308_-	hypothetical protein	NA	NA	NA	NA
WP_004191540.1\|4006318_4007413_-	hypothetical protein	F1C5E1	Cronobacter_phage	2.2e-123	62.8
WP_058842813.1\|4007424_4007853_-	hypothetical protein	F1C5E0	Cronobacter_phage	8.1e-42	60.8
WP_040186437.1\|4007856_4009242_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.5e-153	59.7
WP_049185996.1\|4009314_4009665_-	hypothetical protein	NA	NA	NA	NA
WP_064148479.1\|4009764_4010778_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	1.5e-110	67.5
WP_058842815.1\|4010710_4012174_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	4.0e-149	56.1
WP_048294304.1\|4012186_4013485_-\|terminase	PBSX family phage terminase large subunit	Q5G8Y7	Enterobacteria_phage	3.0e-241	94.3
WP_048294303.1\|4013468_4013936_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.5e-57	73.8
WP_058842816.1\|4013966_4014593_-	hypothetical protein	I6S676	Salmonella_phage	8.4e-104	84.9
WP_058842820.1\|4015442_4015901_+	hypothetical protein	NA	NA	NA	NA
WP_087760209.1\|4016334_4016472_-	hypothetical protein	NA	NA	NA	NA
WP_058842818.1\|4016474_4016942_-\|lysis	lysis protein	A0A192Y689	Salmonella_phage	1.0e-53	71.6
WP_004146527.1\|4016938_4017469_-	lysozyme	G9L6J6	Escherichia_phage	5.4e-80	79.7
WP_004151282.1\|4017471_4017720_-	hypothetical protein	NA	NA	NA	NA
WP_048322094.1\|4018147_4018672_+	hypothetical protein	NA	NA	NA	NA
WP_048322093.1\|4019016_4019706_-	antiterminator	I6PDF8	Cronobacter_phage	1.9e-56	54.5
WP_048322092.1\|4019702_4019843_-	YlcG family protein	NA	NA	NA	NA
WP_058842819.1\|4019839_4020475_-	NinG family protein	M9NYX8	Enterobacteria_phage	2.2e-80	77.0
WP_032431555.1\|4020467_4020638_-	NinE family protein	G8C7V4	Escherichia_phage	5.7e-15	73.2
WP_016530701.1\|4020618_4021086_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	1.5e-33	46.5
WP_048322089.1\|4021276_4021534_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	6.4e-26	74.0
WP_032432693.1\|4021862_4022060_-	hypothetical protein	NA	NA	NA	NA
WP_048322087.1\|4022052_4022319_-	hypothetical protein	A0A077SLR0	Escherichia_phage	4.6e-27	69.8
WP_048322086.1\|4023330_4023849_-	hypothetical protein	G9L6B3	Escherichia_phage	1.8e-91	92.7
WP_048322084.1\|4024351_4024549_-	hypothetical protein	NA	NA	NA	NA
WP_048322083.1\|4024541_4024805_-	DUF4752 family protein	T1S9K2	Salmonella_phage	1.3e-29	75.6
WP_040181698.1\|4024801_4025224_-	hypothetical protein	R9TME7	Aeromonas_phage	1.5e-11	39.9
WP_004218528.1\|4025220_4025523_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_040181695.1\|4025519_4026257_-	Replication protein P	A0A0K2FIT1	Enterobacteria_phage	6.9e-65	55.2
WP_040181719.1\|4026253_4027219_-	replication protein	K7PGZ0	Enterobacteria_phage	5.1e-60	78.9
WP_040181694.1\|4027278_4028076_-	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	2.8e-88	67.9
WP_004139615.1\|4028161_4028383_-	bacteriophage CII family protein	NA	NA	NA	NA
WP_004178811.1\|4028422_4028656_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	3.0e-22	70.4
WP_024622727.1\|4028760_4029450_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.0e-86	70.6
WP_004178801.1\|4029472_4029592_+	hypothetical protein	NA	NA	NA	NA
WP_032434121.1\|4029790_4030507_+	hypothetical protein	NA	NA	NA	NA
WP_032434120.1\|4030497_4031043_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_024622729.1\|4031091_4031295_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	1.0e-18	71.6
WP_154706900.1\|4031541_4031730_+	hypothetical protein	NA	NA	NA	NA
WP_019704100.1\|4031722_4031917_+	hypothetical protein	NA	NA	NA	NA
WP_040182107.1\|4032006_4032291_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.7e-40	81.9
WP_040182110.1\|4032307_4033054_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	7.0e-65	67.7
WP_040182112.1\|4033050_4033674_+	exonuclease	A0A0S2SY31	Pseudomonas_phage	5.8e-57	59.2
WP_040182113.1\|4033702_4034230_+	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.1e-56	61.0
WP_040182114.1\|4034226_4034445_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	4.4e-12	52.2
WP_071531921.1\|4034446_4034782_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_021441323.1\|4034658_4035822_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	2.9e-203	87.1
WP_004143017.1\|4036253_4037120_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
4035836:4035882	attR	NA	NA	NA	NA
WP_004143016.1\|4037121_4037334_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143010.1\|4037379_4038765_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP041953

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 37369

Klebsiella_phage(81.82%)

terminase,portal,head,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039814612.1\|1727_2528_-	hypothetical protein	O64341	Escherichia_phage	3.2e-116	78.1
WP_039814615.1\|2524_2755_-	hypothetical protein	NA	NA	NA	NA
WP_032413547.1\|2751_2916_-	host cell division inhibitor Icd-like protein	Q6UAV3	Klebsiella_phage	2.8e-19	96.3
WP_072040876.1\|3494_3920_+	hypothetical protein	NA	NA	NA	NA
WP_077256350.1\|4058_5051_-	hypothetical protein	A0A2H5BFZ4	Vibrio_phage	1.4e-23	40.8
WP_039814626.1\|5385_5736_-	hypothetical protein	O64343	Escherichia_phage	5.1e-50	77.6
WP_039814628.1\|5732_6029_-	hypothetical protein	NA	NA	NA	NA
WP_106418127.1\|6021_10026_-	origin of replication binding family protein	A0A2I6TD01	Escherichia_phage	0.0e+00	81.3
WP_048292304.1\|10276_10885_-	XRE family transcriptional regulator	Q6UAU6	Klebsiella_phage	1.3e-104	92.6
WP_032408972.1\|10965_11175_+	hypothetical protein	Q6UAU5	Klebsiella_phage	7.7e-30	92.8
WP_032408971.1\|11164_11902_+	phage antitermination Q family protein	Q6UAU4	Klebsiella_phage	2.2e-119	84.5
WP_048292305.1\|12313_12922_+	3'-5' exonuclease	Q6UAU3	Klebsiella_phage	3.0e-98	88.5
WP_023339397.1\|13522_13768_+	hypothetical protein	G8C7U9	Escherichia_phage	5.1e-25	83.1
WP_048292306.1\|13760_14087_+	hypothetical protein	Q6UAT7	Klebsiella_phage	1.1e-51	94.4
WP_023339395.1\|14107_14335_+	hypothetical protein	O64355	Escherichia_phage	2.8e-25	80.3
WP_023339393.1\|14686_14974_-	helix-turn-helix transcriptional regulator	Q6UAT4	Klebsiella_phage	1.7e-43	96.8
WP_023339392.1\|14973_15282_-	type II toxin-antitoxin system RelE/ParE family toxin	Q6UAT3	Klebsiella_phage	3.9e-46	94.2
WP_023339391.1\|15452_15674_+	hypothetical protein	O64358	Escherichia_phage	3.0e-32	90.4
WP_032408967.1\|15685_15913_+	hypothetical protein	Q6UAT1	Klebsiella_phage	1.6e-28	84.0
WP_048292307.1\|16230_17292_+	site-specific DNA-methyltransferase	Q6UAT0	Klebsiella_phage	1.0e-170	92.9
WP_023339388.1\|17350_17662_+	hypothetical protein	Q6UAS9	Klebsiella_phage	6.3e-44	89.1
WP_048292308.1\|17658_18150_+	hypothetical protein	Q6UAS8	Klebsiella_phage	4.1e-82	90.2
WP_040118545.1\|18166_18643_+	hypothetical protein	Q6UAS7	Klebsiella_phage	1.7e-61	79.7
WP_117037470.1\|18590_18785_+	hypothetical protein	Q6UAS6	Klebsiella_phage	1.5e-19	89.5
WP_032408961.1\|18896_19196_+	DUF4406 domain-containing protein	Q6UAS4	Klebsiella_phage	3.0e-51	96.0
WP_053090680.1\|19365_20427_+	hypothetical protein	Q6UAS3	Klebsiella_phage	8.8e-37	38.3
WP_072072213.1\|20410_20773_+	HNH endonuclease	Q6UAS2	Klebsiella_phage	2.4e-63	94.2
WP_032408958.1\|20769_21054_+	hypothetical protein	Q6UAS1	Klebsiella_phage	3.1e-05	37.5
WP_077256079.1\|21050_21482_+	hypothetical protein	Q6UAS0	Klebsiella_phage	7.6e-40	59.9
WP_032408957.1\|21898_22333_+\|terminase	terminase	Q6UAY1	Klebsiella_phage	2.4e-73	95.8
WP_032408956.1\|22367_24077_+\|terminase	terminase large subunit	Q6UAY0	Klebsiella_phage	0.0e+00	95.1
WP_064168720.1\|24249_25509_+\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	3.1e-222	89.8
WP_087749692.1\|25545_26466_+	S49 family peptidase	Q6UAX7	Klebsiella_phage	3.6e-148	87.6
WP_087749693.1\|26543_27830_+\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	1.8e-206	86.0
WP_087749694.1\|27889_28177_+	hypothetical protein	Q6UAX5	Klebsiella_phage	2.5e-18	79.6
WP_023339902.1\|28157_28475_+\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	5.8e-45	88.8
WP_087749695.1\|28471_28810_+\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
WP_017880258.1\|28790_29180_+	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_017898997.1\|29176_29578_+	hypothetical protein	Q6UAX1	Klebsiella_phage	1.7e-62	94.0
WP_014228913.1\|29609_30071_+\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_014228914.1\|30128_30494_+\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_106418128.1\|30726_34083_+\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	87.3
WP_017898999.1\|34082_34421_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.4e-57	88.4
WP_020803197.1\|34417_35173_+\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	6.7e-124	80.1
WP_039814703.1\|35174_35885_+	peptidase P60	Q6UAW4	Klebsiella_phage	6.7e-134	89.8
WP_052285794.1\|35931_36759_+	hypothetical protein	A0A0P0IYG9	Acinetobacter_phage	1.3e-08	44.0
WP_032447254.1\|36775_37369_+\|tail	tail assembly protein	Q6UAW2	Klebsiella_phage	3.7e-85	80.7

DBSCAN-SWA_2

50501 : 54173

Klebsiella_phage(100.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065519969.1\|50501_51962_+\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	2.7e-97	52.9
WP_048993688.1\|52041_53007_-	ParB/RepB/Spo0J family plasmid partition protein	Q6UAV8	Klebsiella_phage	1.5e-155	86.6
WP_023339381.1\|53009_54173_-	plasmid-partitioning protein SopA	Q6UAV7	Klebsiella_phage	2.1e-225	98.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041949

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041947

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP041946

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP041953

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection