CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP045245	Cellulomonas sp. JZ18 chromosome, complete genome	2 crisprs	csa3,WYL,DEDDh,cas4,cas3	2	2	0	0

Cas Category Instructions

Results visualization

1. NZ_CP045245

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045245_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045245_1

1456173-1456284

Orphan

Consensus_repeat	Method
CGGACCGACCCGACGCGCACCGACC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP045245_1

>merge|NZ_CP045245|1|1456173-1456284|CRISPRCasFinder
CCGACCGATCCGACCCGAACCACGGTCCGGACCGAGGGGGTCCGGACCGACCCGACGCGCACCGACCCAGCGCGCACGGACCCGACGCGCACCGACCCAGCGCGCACCGACC

>NZ_CP045245|1|1|1456173-1456284|CRISPRCasFinder
CCGACCGATCCGACCCGAACCACGG	TCCGGACCGAGGGGGTC
CGGACCGACCCGACGCGCACCGACC	CAGCGCGCACGGACCCGACG
CGCACCGACCCAGCGCGCACCGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045245.1\|WP_155376966.1\|1454984_1456061_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|366154
NZ_CP045245.1\|WP_155376973.1\|1467287_1469963_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP045245.1\|WP_155376968.1\|1460127_1460907_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP045245.1\|WP_155378982.1\|1442827_1444543_+\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP045245.1\|WP_155376961.1\|1445261_1445978_+\|response-regulator	unknown	unknown	gnl\|CDD\|225818
NZ_CP045245.1\|WP_155378984.1\|1448828_1451756_+\|beta-glucosidase	unknown	unknown	gnl\|CDD\|185053
NZ_CP045245.1\|WP_155376970.1\|1461554_1462193_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045245.1\|WP_155376965.1\|1454358_1454988_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045245.1\|WP_155376960.1\|1444649_1445033_-\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_CP045245.1\|WP_155376971.1\|1462277_1463672_-\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_CP045245.1\|WP_155376972.1\|1465663_1467208_+\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|377697
NZ_CP045245.1\|WP_155376959.1\|1441975_1442689_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|213673
NZ_CP045245.1\|WP_155378987.1\|1463834_1465445_-\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP045245.1\|WP_155376963.1\|1447323_1448487_-\|UDP-galactopyranose-mutase	unknown	unknown	gnl\|CDD\|223636
NZ_CP045245.1\|WP_155376964.1\|1451868_1454310_+\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|185053
NZ_CP045245.1\|WP_155376967.1\|1459680_1460091_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380066
NZ_CP045245.1\|WP_155376974.1\|1471614_1472130_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240039
NZ_CP045245.1\|WP_155378985.1\|1456352_1458236_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP045245.1\|WP_155376969.1\|1461005_1461542_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP045245.1\|WP_155376962.1\|1445974_1447309_+\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|340412

Protein	Function_ID	Function_description	E-value
NZ_CP045245.1\|WP_155376960.1\|1444649_1445033_-\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	8.68156e-42
NZ_CP045245.1\|WP_155376973.1\|1467287_1469963_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP045245.1\|WP_155376968.1\|1460127_1460907_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.44459e-11
NZ_CP045245.1\|WP_155376966.1\|1454984_1456061_+\|glycosyltransferase	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.43211e-28
NZ_CP045245.1\|WP_155376961.1\|1445261_1445978_+\|response-regulator	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	7.52613e-35
NZ_CP045245.1\|WP_155378984.1\|1448828_1451756_+\|beta-glucosidase	gnl\|CDD\|185053	PRK15098, PRK15098, beta-glucosidase BglX.	1.26107e-28
NZ_CP045245.1\|WP_155376974.1\|1471614_1472130_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240039	cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.54574e-39
NZ_CP045245.1\|WP_155376971.1\|1462277_1463672_-\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	2.8683e-43
NZ_CP045245.1\|WP_155376972.1\|1465663_1467208_+\|threonine/serine-exporter-family-protein	gnl\|CDD\|377697	pfam06738, ThrE, Putative threonine/serine exporter. ThrE is a family of bacterial and Archaeal proteins that catalyze the export of L-threonine from the cell. UniProtKB:Q79VD1 has been characterized as being necessary for this export. The domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent efflux of threonine and serine.	9.35536e-47
NZ_CP045245.1\|WP_155376959.1\|1441975_1442689_-\|HAD-IA-family-hydrolase	gnl\|CDD\|213673	TIGR02009, Hypothetical_protein_Rv3400/MT3508/Mb3433., beta-phosphoglucomutase family hydrolase. This subfamily model groups together three clades: the characterized beta-phosphoglucomutases (including those from E.coli, B.subtilus and L.lactis, TIGR01990), a clade of putative bPGM's from mycobacteria and a clade including the uncharacterized E.coli and H.influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).	3.85516e-41
NZ_CP045245.1\|WP_155378987.1\|1463834_1465445_-\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP045245.1\|WP_155376963.1\|1447323_1448487_-\|UDP-galactopyranose-mutase	gnl\|CDD\|223636	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane].	0
NZ_CP045245.1\|WP_155376964.1\|1451868_1454310_+\|glycosyl-hydrolase	gnl\|CDD\|185053	PRK15098, PRK15098, beta-glucosidase BglX.	2.30101e-80
NZ_CP045245.1\|WP_155376967.1\|1459680_1460091_+\|hypothetical-protein	gnl\|CDD\|380066	pfam17940, TetR_C_31, Tetracyclin repressor-like, C-terminal domain. This is the C-terminal domain found in putative transcriptional regulator, TetR family proteins.	1.60827e-13
NZ_CP045245.1\|WP_155378982.1\|1442827_1444543_+\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP045245.1\|WP_155378985.1\|1456352_1458236_+\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP045245.1\|WP_155376969.1\|1461005_1461542_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	7.96695e-21
NZ_CP045245.1\|WP_155376962.1\|1445974_1447309_+\|GHKL-domain-containing-protein	gnl\|CDD\|340412	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing. This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Staphylococcus aureus AgrC which is an HK of the accessory gene regulator (agr) quorum sensing two-component regulatory system (TCS) AgrC-AgrA. The agr system plays a part in the transition from persistent to virulent phenotype. This family also includes Streptococcus pneumoniae ComD HK of the ComD-ComE TCS, involved in quorum sensing and genetic competence.	4.64073e-42

>NZ_CP045245.1|WP_155376966.1|1454984_1456061_+|glycosyltransferase
MSTTTAPATSASPRTVDGVAVATPVLTVVVPAYNSEAYLDRCLDTVGAAGPEVEVVVVDDGSQDGTAALAQRYADRHPSVRVVRKANGGHGSAINVGLEHARGTYLKVVDSDDWVDEDALAELVATLRGFVSRGDDVDLVVSNFVYEKVGRRPHVVRFGAALPRRRVTTWDGTRRFRKGRYLLMHALVYRTRLLRDCGLRLPEHTFYVDNLYAFLPLQHVRTLYYLDVDLYRYFIGRDDQSVHEAVMLRRLDQQLRVNWAMLRHLRGLEVPDGRLRDYLLHHVEIVCAVSSILLLRSGTPADLAARDHLWDELRAEDAWLYRRVRWSAVGALSNLPGRAGQRASLLAYRVAQRVVGFS
>NZ_CP045245.1|WP_155376965.1|1454358_1454988_+|hypothetical-protein
MVTRLRGLWASFVERRPGTAQFLVFLVLSNGITVLQLALMPLFRAAFDGTSLVGTDFQVWQVGTNPDGTAYHVFDYAAGSLPEGGGGLAYFLAVQITLLIAQVINFFAQRSITFKSNSSVARAAAWYAIAYVVITLGAAAAQGLYKAPLYELLIDTWGMGRTGETAADVLTMIINSAISFWVFFPIFKVIFKREPEPAGAVATEDSRTA
>NZ_CP045245.1|WP_155376964.1|1451868_1454310_+|glycosyl-hydrolase
MTDQSLRTSADVDAVLARLTLLEKAALLAGKNVWQTRDVPRLGVPSAFLADGPHGVRKQVGSSDHLGLHASEPATCFPTAATVANSWDPVLAERIGRALGAEAAAQGVDVLLGPGLNIKRSPLCGRAFEYFSEDPLLSGRLAAAYVRGIQDQGVVACPKHFAANSQELRRMASDSVVDERTLREVYLTAFEIVVRESAPGAIMSAYNLVNGTYAHENHHLLTEVLREEWGFDGAVVSDWGGANDSVAAVRAGGSLEMPAPGLHVARRLVRAVEDGELDVADLDARVREVLALALRERPLPGPVDADAHHALAREAAARSAVLLKNDGDLLPLAPGTRVAVVGDFAATPRYQGAGSSQVNPTRLDSVLGAVAGSGLVLTSYAPGFRRDGTPAPALVREAVEAAAGADVVLVHLGLAEIAESEGVDRTHLRLADDQVALLRAVAAVHDRVVVVLSAGGVVEVPWLDECTALLHAYLGGQAGAAGVLDVLTGRVAPAGRLAETYPVRLADTPTADTFPAQGRTVEYREGPFVGYRYYTTAGVAVAFPFGFGLTYTTFAYDDLVVGDREVRFTLTNTGARAGAEVAQVYVRRRGDGVLRPERVLAGFARVELAPGERRTVTVALDPTALRHFDTASGSWQVETAEYDVLVGASVTDVRLEGVARVTGTAPARAGAADALPSYRAARVQRVPDAEFAALLGRPVPVPATRGPLGVNDTLGQMDGARSPLARFVHRVLVAVRRRADRRGKPDLNALFVYHMPFRAIAKMTNGVVSDAAVEAILTAVNGRTLVGLGRTVRALVRTALADRRTRRDLATGH
>NZ_CP045245.1|WP_155378984.1|1448828_1451756_+|beta-glucosidase
MSNKKYLSIWVPVLSVAVVLVVGANIALGVFSNWVSSQLGTGTFDLVNDESTQGWDTEYSTADHATAEEAEAAATDLVERIADEGIVLLKNDGQALPLGDAPRVTLLGRGAADPVYGGAGSGSVDTSSAVDFRAGLENAGVEVNGTVYDELATFAEDAPRANIVMDKPGESSYEVGEMPVADYSDEARASFAEYADAAVVVIGRGGGEGGDLATDMEGSEENYEPGQHQLELNKDERDLLALATESFDTVVVVVNASTSMELGLVQDDPGVDAVLQVGSPGATGLNALGRVLTGETNPSGRTVDVFSRDFTADPTFVNVGSYRYSNIDGLGTDPGRGVDGGAYFVQYEEGIYVGYRYYETAAAEGVLDYDQAVVYPFGYGLSYTSFDWAVTGTRAGEVDGTVAVDVEVTNTGDVAGKDVVQLYYSAPYTPGGIEKSSVVLGDFAKTDLLAPGASQTLTLELAVEDMASYDHEGAQAYVLEAGDYRLTVQSDSHTVKAGTEPVTYTVAETVTYSGEDHRASDATEVTNQFDDVSSAFTATPEEGRPHLMSRADFAGTFPTAPTEADLVASDETVAAFEPYDAKAVNAEADAEMPTTGADNGLGLIDVRGLDYDDPLWDELLDQLTVDEMTNVILNGAYNTGAINSIAKQATGDYDGPAGFSSFINDAISGVAYPSEYLLGQTWSTELAREMGVSIGNEALTLDANGWYAPAVNLHRSPFAGRNFEYYSEDPVLSGHLATEVMSGAASKGVYSYVKHYALNDQETNRVNHGVATWADEQTMREIYLKAFELPLKNTSAEMRYVADDEGTVATREIGAMAVMSSFNRIGHTWAGGSKALMGTVLRDEWGFRGIAITDFNLYEYMYPDQGIAAGSDLMLTFQPMKQLADTTSAAGVAHIREATHNILFPVANSNAMNGVASGAEMHYTPPTWRYVQIGATALLALLIGFGAYRVVRRVRRHRAAQAAAPTVETVDASRV
>NZ_CP045245.1|WP_155376963.1|1447323_1448487_-|UDP-galactopyranose-mutase
MDLLVVGAGLFGLTVAERAAQAGLRVVVIDRRDHLGGNAWSSVDERTGIEVHRYGSHIFHTSHAGVWEYVQRFTRFTDYRHRVYTRHRGTVYPLPINLGTINQFFGTALGPEAARALVAEQASEVEPGGGTNLEERAVSLIGRPLYEAFVRGYTLKQWQTDPRELPASVITRLPVRYTYENRYFSDTWEGLPVDGYGAWFARMADHPRIEVRLGTDVFDTTQPLHRDAVRGQVPVVYTGPVDRWFDHAEGRLTWRTLDLSTRVEPVRDFQGTSVMNYADADVPWTREHEFRHFHPEREDRHAQDATVVMRETSRLAVEGDDPYYPVSTAADREVLRAYRTLAKDEPDVHFGGRLGSYLYLDMHMAIQSALQLWASGRVTGDRALTNR
>NZ_CP045245.1|WP_155376962.1|1445974_1447309_+|GHKL-domain-containing-protein
MNPAETLPDIPRALTGLAEWSACVVYLLVVARRRPSARLAVTAGVALVLQVGVQVAAGLLPLRLWPVGMAAAVVVMLAFVHHAARLPLRASGYLTARALVLAELVASFHWQLHVFFFRADPVPDTPAQVGFAVLVHAAAYTGAWAVERRNVTRDSVVGVGTRDLLQAGAIALVTFAMSNVSFLSTSTPFSGRLGQEVFYIRTLVDLCGFVALHAQQGQRLEAHARAELGAIDAVLRSQHEQYLASKRSMDAVNRTYHDLKHQIQVIRAEADPARAHAHLDDLEASIRDHTAYVRTGNPVLDVLLTTKSRECAERGVELTCVADGALLSFMSAMDVATVIGNALDNAVEAACVVEPADERLIRMALFAQSDLVLLVVENRFAGERRVEDDRVATSKADRTRHGYGLKSIRHTAEKYDGSMTVRAADGWFTLRVLLPRPATDASAA
>NZ_CP045245.1|WP_155376961.1|1445261_1445978_+|response-regulator
MIRVGIAEDDAASVALLRSYLDRYEQEHDVAFRTTTYGDGADLVERYRSDQDILLLDVEMPDLDGFSAAERVRAVDQDVVIVFITNMAQYAIRGYEVEALSYLLKPVPYYAFSQQMRRSVERVRARASVDRLSFTVNGDLVRLDLADVLYVESIRHHLVVHTVDGRYQLVGALKNMEAELADKGFFRSNNCYLVNMRHVRAVRQSTCVLHGGHELVVSRPRKKAFLAALTDHVGGRHA
>NZ_CP045245.1|WP_155376960.1|1444649_1445033_-|MmcQ/YjbR-family-DNA-binding-protein
MHGDAVRQTAVRTAADLPGATHEHPFGPEWDVFKVAGKVFLLLTDVPGEPVAVLKCDPEDALALREQHAGITPGYHMNKRHWITVHGRDDVTADLVQELVRESYLLVRAGLPRDRRPVVPDDLGRSG
>NZ_CP045245.1|WP_155378982.1|1442827_1444543_+|ubiquinone-dependent-pyruvate-dehydrogenase
MAQTIVATLRANGVERVYGIPGDSLNGFTDAIRRDGSIEWVLTRHEEAAALAAAAEAELTGRLAVCVGSGGPGNLHLINGLYDAARSRVPVLAIAAHIPSTEIGSGYFQETHPQELFRECSVYRELVSDPAQMPRMLEIAMRSAIEQRGVSVLVLPGDVALQRAASERVVVVPQARPRVVPAADELAAAADLLNAGRRTTILAGAGVGDAHDDVVALADKLAAPIVHTMRGKDRIEYDNPFDVGMTGLLGFASGYRAMDGADTLLMLGTDFPYQQFFPQDARVVQVDIRGEQLGRRTPLALGLVGDVGETARALLPLIDGGRDRGHLDDAVDHYARTRARLDDLATESRGNRPIHPQYVARLVDELASEDAVLIPDVGSPVIYAARYLHTGGGRRLIGSFTHGTMANALSHAIGAQSAFPGRQVVALAGDGGLAMLLGELMTLAQHRLPVKVVVFNNASLNFIELEMKAAGFVNYGTGLQNPSFAAVAEAMGVRGVRVERSADLRGALAEAFAHDGPALIDVVTERDELSIPPKVTAEQVKGFTLYAIRTVLSGRGDELLDLASANYRQLF
>NZ_CP045245.1|WP_155376959.1|1441975_1442689_-|HAD-IA-family-hydrolase
MDWDRYDAALFDLDGVLTPTALVHMRAWDATFTALFRARGIEPPYGDDDYFRFVDGRPRYDAVRAVLASRDVVLPEGSPQDPPGDGTVHAVGNAKNAHVLRLLAAGVEAYPDAVALLDRLAAADLPCAVVSSSRNARAVLDAARLTDRFRLVVDGVVAARERLAGKPAPETFAYAARALGVPADRCVVLEDAVSGVAAGAAGGFGLVVGVDRGAGADALRAAGADVVVTRLTDLVGP
>NZ_CP045245.1|WP_155378985.1|1456352_1458236_+|BCCT-family-transporter
MLREVTSPETVGGPHPALLPGIGVEQTHRSFGVDRVVFAAAIAVVAGVIAWGVASPAGLAQVAASGFAFVTTDFGWFFGVLTVAVFLFMMWLGFGRHRAVRLGQDEEKPEFSTLSWIAMLFSAGMGIGLLFYGPLEPMSFFHELPPAFARTEAGSDRAMHVALAQTLFHWGPVAWAYYALVGGAVAYAAYRKGRTPLMSALLEPIFGRRSHGVLGKVVDVFAIVVTLFGTAVSLGIGALQIGRGAEIVAGVGPLGNAVVVGIIAVLAVAFIFSAVSGLKRGIRALSNVNMALAGLLGLFVLVVGPTVLLLNLVPGVLMTFLGELPALMAQSAATAPGAQEFMSAWTTYYWAWWVSWTPFVGMFVAKISRGRTLREFVTAVIVVPSAVCLVWFTVLGGTTMWLEQTGASMSAAASGQDMLFALLHELPLGAVTSVLAVVSVVIFFVTSADSASIVMASLSEQGNPEPRRATTVVWGIALATIAAVLLVGGGQVALSGLQSLMIVSALPFAVVVVLVMVAWAKDLARDPLTLRRRYAREALDQGVRAGIEEHGDDFVLGVVPTEPNEGAGAWLDTQDPALTEWYRPDGEDGAPRPPHAGGADGQQADAAARSSARPAVLTPAHPERGRG
>NZ_CP045245.1|WP_155376967.1|1459680_1460091_+|hypothetical-protein
MPRRPRAAGRGRRRGDGPLLRAGDEESLAAVLAQVLHRWATTERTRQLGRYALFLEALRRPELARALHEGGAAVRRAVAAVLADLGAPQPQQRADWLVAALDGVLLERVAGARSGEPVDDDTFVGVARWLAHAALT
>NZ_CP045245.1|WP_155376968.1|1460127_1460907_-|GNAT-family-N-acetyltransferase
MENAPGGPDAADPSPAARRARTAHADAWEQQALVRRAAGGATAHLPGIRVMTSGLDDARWNHGDVTDPGLVDVTAVSAWFASRGVRWGVRVPAGTPWTHGRLLLRTRLMTLDAPDLRPVAPVPGLRVRAAGPQDLPTVLDVDAAAFGGAVAQEWIRPHLVSSEITTALAELDGVPVATAYVVRSDGLAGPAAYLAGVGVRPEARRRGVAAAVSAWLLRDAFGRGCRFAHLHPDDDAAARVYARLGFTEVDGLDVYVDVA
>NZ_CP045245.1|WP_155376969.1|1461005_1461542_+|GNAT-family-N-acetyltransferase
MASATSRGRPGRGEDGVVLIRDYTAADAAPTLAVFEDAIRRTARSRYSAEQVEAWLGGPRDLAPWNAARLRVRTFVADDAGTVAGFTDLDDAGYVDRLFVSPDHGRRGVGRALLEHVLVTADALGLPELTTHASLVARPVFERAGFHVVHEETVRRGAVELTRFHMRRPSDAAAPTSP
>NZ_CP045245.1|WP_155376970.1|1461554_1462193_-|hypothetical-protein
MRLYAQDGRRRTRQVLGDVAVLVWVAGWLWVARWLHDLVARLGAPGRTLEDAGTSLRDSLGSAGESVSRIPLVGDEVRSPFDAAGGAAGSVAAAGVQVQDATARLALAVAVAVALGPVLVVLVAWLRARWAFARRAGAAARLVDSAADLDLFALRALATQPVTRLARVGDDPAGAWRRGDPAVVHALAALELRALGVRPPAAPDGRRVAADG
>NZ_CP045245.1|WP_155376971.1|1462277_1463672_-|chromate-efflux-transporter
MSADETTTSDRPAPGRDLVPFGTAVRTWFAISLQTFGGPAGQIAVMQRTLVDEKRWIGQQRFLHALNYCMLLPGPEAQQLAVYTGWLLNGFRGGLVAGSLFVLPGVVALLGLAAVYVAFGDTTAVAALFAGLAPAVLAIVVQAVVRVGRRALAGPALVALAVAAFVALTVLGLPFPLVVVAAGVLGWLLHRVAPRLLTTAGADGAQPAGPPPLIPDDALHSARPSGRRTALLLVLGVAVWLAPVAAAAITTGGDGVLTQQGLFFSGTAVVTFGGAYAVLAYVAQRAVETYGWLAPGEMVRGLALAETTPGPLIMVVQFVAFLGAYRDPGGLDPWVAALLGALLTTWVTFVPSFLLILLGAPYVERLRGNRPLAAALTGITAAVVGVIANLAVYFALHTLFASTTTVQAGPVHLELPDLASVRPVPVVIALVAGVLVLRLRWSVLRTLGACALLGGVAGVLGLVD
>NZ_CP045245.1|WP_155378987.1|1463834_1465445_-|BCCT-family-transporter
MHPAVYWPALVVIVLVAGLAIAFPDRAGTAIDALQDNVVGAFGWYYVLLVAAFVVFALWVGLGRWGDIVLGDDDAQPEFGIGAWFSMLFAAGMGIGLVFWGVAEPLSHFASPKPGVVGAPERLAEQAMAQTYLHWGVHAWAIYVVVGLALAYAIHRRGRPVSIRWALEPLFGERVRGRLGDVIDVTAVVGTVFGVATSLGLGVLQITAGLDHIGVLTPSTGVQVVLILVITAAATVSVVSGLDRGLKWLSNANVTMAGVLLLAILVLGPTLFLLREFVQSLGVYLANVLPLTFNVSAYAGEAGEAWQAAWTTFYWGWWISWAPFVGVFIARISRGRTVREFVGGVLLVPTLVTFLWFSVLGGSAVYRELFGQGGMVGADGTVVPENALFDLLGDLPWGSALSVLAIVLVALFFVTSADSGSLVVAMLASGGDPQPRVAIRVTWAVLSGVLAVALLLAGGLVALQTAAILIALPFSVVMIGMGVATSRALHREHTELLRAERRLRRAQLVEHVTEQVTARVQGRERERPGRRGGARG
>NZ_CP045245.1|WP_155376972.1|1465663_1467208_+|threonine/serine-exporter-family-protein
MRAVGVVRRLARRGVGGPPTVQVGRRTRGGGRDEAFVRDVLELAVRVGETMLSLGASAADVTATIRRLAHAFGLECEVDLTFTAILVSHDPGGSRAPVTVLRVVAARTADYGRLTRVLELAQEVGAGPDGPEDHAAVVARLRDAHERLDVIVAAPHPYHRRLVTVLLSVMAAGVAVLLGGGLAVAVLAGATTAVVDRVLLRLQRWAIPPFFQQAAGATVATLVAVALFVLVPLLPVGLATLPPALVVASGIVVLLAGLSFVGAAEDAIDGFPVTAVGRMFEVLLLTLGIVVGIGGVLDVAQRLGVTLEVVDVPQGALPTGVQAVAAGVVSGAWALASYARARAAVVAALAGGTAWLTSAALGALGLGPAVAGAGAALLVGFLAESLARRLRVPAIVTSICAIVPLLPGLAIYRGLFRLVQADPARPATPVLLGAAMVALGLAAGVTLGGLLARPLRERVRRATWPVQRVGVQVVRRPGRGDGTRTAGGPVQAAPDPGDVRHTADAAAPDDDAGA
>NZ_CP045245.1|WP_155376973.1|1467287_1469963_+|phosphoenolpyruvate-carboxylase
MSGAEKAAEVPRGVASHEVPEPLRNDVRLLGELLGRVLRESGGEDLLADVERLRELTIRSHGEPDGDALAQAEHLVASFSPERAEQVARAFTCYFHLANLAEEYHRVRVLHERESRLAPHELAPDDSLPAAYQRLEEEVGPEVARERLRTLEFRPVFTAHPTEARRRAVARSIRRVAELVAERDAQHIGGTTLAENERRLLAEIDTLWRTSPLRAEKPTVLDEVETVLSIVDATLADVLPQVYRRLDDWLLAADAGTTAPVVAPFARLGTWIGGDRDGNPNVTAEVTRAAAVAASEHALDALLTSVRRTAAGLTLDAVGTPPSPELNALWQRQRSLAEQIAARAANDAPNEPHRRALLVVAERVAATRRRDADLAYAAADELEADLRVVQDSLVAAGARRAAYGDLQRLLWQVQTFGFHLAELEVRQHSQVHAAALADIEANGVDGPLEPRTLEVLDTFRALGAVQRRFGVAAARRYIVSFTQSAEHLAAVYRLAELAFGGAEDAPVIDAIPLFETFADLQASVDILEEALQHPRVQERLAQNGRRVEVMLGYSDSSKDVGPLSATLALDDAQRRIADWARRHDIVLTLFHGRGGALGRGGGPANRAVLAQPPGSVDGRFKLTEQGEVIFARYGDPDIATRHIEQVAAATLLADAPSVVRRNEAAAARFADLARRLDVTSRERFHALVRAEGFPAWFAEVTPLEELGLLPIGSRPARRGLSVSSLDDLRAIPWVFSWSQARINLAGWYGLGTALDAVGDLDELRTAYAEWPLFATIIDNVEMSLAKTDERIAARYLALGDRDDLADAVLEEMRLTRRWVLATTGSDAILGRRRILGRAVQLRSPYVDALSLLQLRALRGLRTGAEGEQVDELRRLLLLTVNGVAAGLQNTG
>NZ_CP045245.1|WP_155376974.1|1471614_1472130_-|NUDIX-domain-containing-protein
MPVDPAGPVRYAPDDHLGGRSLLVAAAYVVLRRRHAGHDEVLLQLRHGTGYMDGFWATLAGHVDPGESVHEAAVREAAEEAGVVVAPDALRPLTVLHRFQRGGPAVEQRLDAFFEVAAWSGEPGVREPAKTAAMAWYPLDALPDPVVPHERLVLEHLAAGDALPAVVSLPS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP045245_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045245_2

3745850-3745925

Orphan

Consensus_repeat	Method
CACCTCCTCGGCCGCGCGGCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045245_2

>merge|NZ_CP045245|2|3745850-3745925|CRISPRCasFinder
CACCTCCTCGGCCGCGCGGCACGCCCTCCGCCGGGACCCTCCTCCGCCGCGACACCTCCTCGGCCGCGCGGCACGC

>NZ_CP045245|2|2|3745850-3745925|CRISPRCasFinder
CACCTCCTCGGCCGCGCGGCACGC	CCTCCGCCGGGACCCTCCTCCGCCGCGA
CACCTCCTCGGCCGCGCGGCACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045245.1\|WP_155378608.1\|3741634_3742273_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378474
NZ_CP045245.1\|WP_155378607.1\|3740334_3741600_+\|RNA-polymerase-subunit-sigma-24	unknown	unknown	gnl\|CDD\|227277
NZ_CP045245.1\|WP_155379307.1\|3750536_3752060_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223732
NZ_CP045245.1\|WP_155378616.1\|3750239_3750518_+\|DUF4235-domain-containing-protein	unknown	unknown	gnl\|CDD\|379422
NZ_CP045245.1\|WP_155378615.1\|3748840_3749938_-\|thiamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270263
NZ_CP045245.1\|WP_155378619.1\|3753593_3754172_-\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
NZ_CP045245.1\|WP_155378604.1\|3738906_3739473_-\|DJ-1/PfpI/YhbO-family-deglycase/protease	unknown	unknown	gnl\|CDD\|153228
NZ_CP045245.1\|WP_155378613.1\|3745930_3747100_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP045245.1\|WP_155378603.1\|3738598_3738802_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP045245.1\|WP_155378611.1\|3743869_3744304_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045245.1\|WP_155378617.1\|3752266_3752644_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133398
NZ_CP045245.1\|WP_155378609.1\|3742421_3743534_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP045245.1\|WP_155378605.1\|3739628_3740000_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226318
NZ_CP045245.1\|WP_155378612.1\|3744467_3744899_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319898
NZ_CP045245.1\|WP_155378614.1\|3747096_3748824_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224099
NZ_CP045245.1\|WP_155379308.1\|3753147_3753588_-\|pH-regulation-protein-F	unknown	unknown	gnl\|CDD\|181179
NZ_CP045245.1\|WP_155378618.1\|3752678_3753119_-\|Na+/H+-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|237169
NZ_CP045245.1\|WP_155378620.1\|3754168_3755752_-\|Na+/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237165
NZ_CP045245.1\|WP_155378606.1\|3739996_3740338_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226318
NZ_CP045245.1\|WP_155378610.1\|3743541_3743784_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP045245.1\|WP_155378608.1\|3741634_3742273_-\|hypothetical-protein	gnl\|CDD\|378474	pfam10688, Imp-YgjV, Bacterial inner membrane protein. This is a family of inner membrane proteins. Many of the members are YgjV protein.	0.000639234
NZ_CP045245.1\|WP_155378607.1\|3740334_3741600_+\|RNA-polymerase-subunit-sigma-24	gnl\|CDD\|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	8.90964e-99
NZ_CP045245.1\|WP_155378617.1\|3752266_3752644_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133398	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.58936e-28
NZ_CP045245.1\|WP_155378616.1\|3750239_3750518_+\|DUF4235-domain-containing-protein	gnl\|CDD\|379422	pfam14019, DUF4235, Protein of unknown function (DUF4235). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 88 and 119 amino acids in length.	8.97122e-16
NZ_CP045245.1\|WP_155378615.1\|3748840_3749938_-\|thiamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270263	cd13545, PBP2_TbpA, Substrate binding domain of thiamin transporter, a member of the type 2 periplasmic binding fold superfamily. Thiamin-binding protein TbpA is the periplasmic component of ABC-type transporter in E. coli, while the transmembrane permease and ATPase are ThiP and ThiQ, respectively. Thiamin (vitamin B1) is an essential confactor in all living systems that most prokaryotes, plants, and fungi can synthesized thiamin. However, in vertebrates, thiamine cannot be synthesized and must therefore be obtained through dietary absorption. In addition to thiamin biosynthesis, most organisms can import thiamin using specific transporters. After binding thiamine with high affinity, TbpA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The thiamine-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.28622e-97
NZ_CP045245.1\|WP_155378619.1\|3753593_3754172_-\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	8.40019e-47
NZ_CP045245.1\|WP_155378604.1\|3738906_3739473_-\|DJ-1/PfpI/YhbO-family-deglycase/protease	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	1.22093e-63
NZ_CP045245.1\|WP_155378613.1\|3745930_3747100_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.14321e-93
NZ_CP045245.1\|WP_155378603.1\|3738598_3738802_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	0.00847694
NZ_CP045245.1\|WP_155378609.1\|3742421_3743534_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.35591e-11
NZ_CP045245.1\|WP_155378605.1\|3739628_3740000_+\|hypothetical-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	9.30395e-17
NZ_CP045245.1\|WP_155378612.1\|3744467_3744899_+\|hypothetical-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	4.94042e-08
NZ_CP045245.1\|WP_155378614.1\|3747096_3748824_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	2.97555e-85
NZ_CP045245.1\|WP_155379308.1\|3753147_3753588_-\|pH-regulation-protein-F	gnl\|CDD\|181179	PRK07948, PRK07948, putative monovalent cation/H+ antiporter subunit F; Reviewed.	6.4572e-17
NZ_CP045245.1\|WP_155378618.1\|3752678_3753119_-\|Na+/H+-antiporter-subunit-G	gnl\|CDD\|237169	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed.	9.68347e-32
NZ_CP045245.1\|WP_155378620.1\|3754168_3755752_-\|Na+/H+-antiporter-subunit-D	gnl\|CDD\|237165	PRK12665, PRK12665, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP045245.1\|WP_155378606.1\|3739996_3740338_+\|hypothetical-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	1.43541e-18
NZ_CP045245.1\|WP_155379307.1\|3750536_3752060_-\|STAS-domain-containing-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	2.19639e-130

>NZ_CP045245.1|WP_155378612.1|3744467_3744899_+|hypothetical-protein
MTTTVPLTGSRQVRLVTDLDASRAWYRDVLGCEVDAWGHALRDAFQLVLQQAADPAHVRPNAVAAPRDTYPTDWRGPQEGWDSYVFVEFDDFGALVAELRERGADLGAGPVEATHSDGTTFRNVTVRDPDGYAIVFGCGARRG
>NZ_CP045245.1|WP_155378611.1|3743869_3744304_-|hypothetical-protein
MRRAGVVVVLAGGLLLTGCAGGEPDAVPSTVSTEPSEDQVRADAFEERLDGLEGRLQDADEGVREQAGAALDEARGAVDEAVSLRDRGTEEGRTAAAERLEAAVDELEATAEGAPDGYAEELDRLTGELRTLAESLRAPEDDDR
>NZ_CP045245.1|WP_155378610.1|3743541_3743784_-|hypothetical-protein
MPTFRVSGTALPTAEAGDVASIDDAVAGEDAVQVEEAVRQDDGSVQFTLHVDAADAAAAAEVGWRVADRMSPGSTVTVLA
>NZ_CP045245.1|WP_155378609.1|3742421_3743534_+|GNAT-family-N-acetyltransferase
MESTTATWTLHELPLVVTPEDPDAWLVVGMVRARNAVIRADWDHDDFASTEQETFSDLRHQRYTRRRRVVALVDGADGDPDRVVGYARLDLPLQENTHTGYADVGVLPSHRGRGIGTALHAAALDLARGDGRAKLMVETDHAVEPAEGPGALSAPTGSGRVPADAPSVRFAQRHGWRLEQVVRHSRLHLPVAPDLLDRYRRESHERAGDDYRVVQWEDACPDAWVDQFALLNTRMSTDVPLGGLDLEEDVWDAARVRTTEEQVLGRGEHLLTSAVEHVPTGTLVAFSSFQVPGHSDEFVWQGDTLVLKEHRGRRLGMLVKVAQLDLLARVRPTVRRISTWNAEENSWMLAINVALGFRPEGCVGEWQVEL
>NZ_CP045245.1|WP_155378608.1|3741634_3742273_-|hypothetical-protein
MVWLEVVGWAGSVLVVVSLMQARVWRFRVMNLVGSLLATAYNAVFGIWAFAAMNGAISLINVYWLWRLRRERDDARVYAVVEVAPDDAYLRHVLAVHADDVARHRTAPARDVAAGEGDELAFLVVRGDETVGVVLVRDAGDGTGLVLLDWVTPRFRDFTPGEFVYRDSDVFAAHGLRRLVVPTAPPGSAPYLERVGFRRTSGEAWERAVVAA
>NZ_CP045245.1|WP_155378607.1|3740334_3741600_+|RNA-polymerase-subunit-sigma-24
MTTDVDAALADAWRTHWSRVVALLVAQFASPDLAEDGAADAFEAAARTWPVDGVPSSPGAWLLTAARRRVLDRLRARAVHLRKEPLMVVDAQMRALAAAAVDPGAHVADEQLRLVLACCHPALAPADRVALTLRFVVGLTTADIARLQLVQHTAMSARLTRAKKRLATSGIAFAVPPPDRLDERLDAVATVLYLVFTAGYQPADVPGGLRIDLADEAVRLTRELDRLVGGRPGLRALLALMLLQHSRRDARVDADGRIVLLPDQDRTRWHADEITEGLALVRALPPLAGLAEDHRLQALVAAEHAAARTPRETRWDVVAGLYAALEQRTGSPVVRLARAVAVAEAAGPAAGLALLDGLDDVLAHHHRLPAVRGELLLRAGRAPEAVAAFERALALVPAPAERVHLTERLAAAREAVGRDDA
>NZ_CP045245.1|WP_155378606.1|3739996_3740338_+|hypothetical-protein
MRVLVLLYQDERVWAEADEAERARYYAQHAAFDVALREAGVTVVAAEALAGVRSAVTFRRRGEDETLVDGPFAETAEQLGGFYLLDAPDLAAVTGTLGTLPEYTLEVRPVAEV
>NZ_CP045245.1|WP_155378605.1|3739628_3740000_+|hypothetical-protein
MAEAQTYLVMLWGDEAPWADATPEQMAAAYADHDRFSKACAEAGHEIVGGEELQGARSATLVRPAADGYEVVDGPYTETVEQLGGYYLIRTADLAGLQSLVPMIMDGGTVEIRPIVDHSGATS
>NZ_CP045245.1|WP_155378604.1|3738906_3739473_-|DJ-1/PfpI/YhbO-family-deglycase/protease
MPATDLTGRRVLAVVTNYGVEQDELVVPVEHLREAGAQVDVAAVEESPIQTLVGDKDPGRTVDPDTTISAVDGQGYDLLLVPGGTINADNLRLQDDAIAIVTEFARSGRPVAAICHGPWSLVEAGLLQGKTLTSYPSLATDVRNAGGEWVDKSVVSDDAGGFTLVTSRTPDDLDDFLGAVDAALGGPA
>NZ_CP045245.1|WP_155378603.1|3738598_3738802_-|SpoIIE-family-protein-phosphatase
MGSTDGARATEEERLAAVHRLDLLDTPPEERFDRAQEAVDRVLALAAGSGTRPDDVTVVAVRRGAAT
>NZ_CP045245.1|WP_155378613.1|3745930_3747100_-|ATP-binding-cassette-domain-containing-protein
MSDGLGVRDVVVRYPGAARAAVDGVSLDVPVGEVVALLGPSGCGKSSLLRAVAGLEPLAGGDVAWDGVGVSGVPVHRRGFGLLFQDGQLFGHLDVAGNVAYGLASRPRAERSARVAELLDLVGLPGTQRRDVATLSGGERQRVALARALAPRPRLLLLDEPLSALDRSLRERLALDLRDVLVTTGTTALFVTHDHDEAFAVADRVAVMDAGRLLQVAAPAALWSRPASRRVAEFLGYEAFVDVPADVDAAPAAVRALVTATAAARATATATATATATATAPATGTATAASTGSGAARPSAGTTLALAAGAFVVAEDPAGAPLTAPCLLLRSRRGRTEVVADVPGVGRVTALAPAGWSCTPGDDVPLRVDAAAVAPLPGAWVAPEPAAEG
>NZ_CP045245.1|WP_155378614.1|3747096_3748824_-|ABC-transporter-permease-subunit
MTTTLERARPAAPASGPRGGGVPPGRVLFWGGAVVVPLVFLGVFFAWPVAAIVGRGFVTDGGLDLGGFADVLGRPRTWRIVGQTLTQATLGTLGSVLLGVPAAYLLHRCTFPGRGAVRAFVTVPFVLPTVVVGVAFRSLLVENGLLGGLGLDGTMTAIVLALVFFNTAVVVRTVGGLWERLDPRAEQAARSLGASPWRAFRTVTLPALAPAIASAASLTFLFCATAFGTVLVLGGRQFGTVETEIWVQTTQFLDLRAAAVLSVVQLVVVVAALALAGRARARTERALHLTEPVDAAHPVRLRDPFDLVAVVVTAVTVAGLIALPLVNLVVRSLRTPDGWGLGNYARLAEPADVLRVTPWEAAVTSLRVALDATVLALVVGGLVALVVSRRPRAAAGRRAVAGLDALFMLPLGVSAVTVGFGFLVSMDRPFGLPLDLRTSGVLVPVAQAVVAVPLVVRTVLPVLRAVDPRLREAAATLGASPARVLRTVDLAVALRSLGLALGFAFAASLGEFGATSFLARPENPTLPVVIFRLLGRPGVENYGTALAASVLLAALTAGIVAVCERLRSPGAGSSW
>NZ_CP045245.1|WP_155378615.1|3748840_3749938_-|thiamine-ABC-transporter-substrate-binding-protein
MTPRTTRRALALTSLTGAAALALTACSAVGSGGGASDDATGTADAGTVTLVTHESFALSEGLLEQFEEESGLTVEVVQQADAGALANQLVLTKDAPLGDVVYGLDNAFATRALDEGVVVPADVTAPAAQDAAQYAVEGDDEGALTAIDYSDVCVNVDTAWFAEHGVPEPTTLESLLDPAYRDLLVVPDPVTSSPGLAFVLATIGAFGEDGWVDYWAGLRDNGLKVADGWSEAYYTDFTAGGGDGPRPIVLSYASSPPATVPEGGTEPTTRALLDTCFRQVEYAGVLAGADNPEGGAQLIDFLLSDAVQADLPGSMYVYPVSTAVELPEEWARWAPLAEQPFEVAPADVDAHREEWLTTWSDTVVG
>NZ_CP045245.1|WP_155378616.1|3750239_3750518_+|DUF4235-domain-containing-protein
MTHDLGGRVADNDKSMVAKIVGMGVTLGAVWVANKVVDTAWEKTKGHKPPAADSTDEDIKFSEVALAAVITGAVVALSRVLATRGAAKLIAR
>NZ_CP045245.1|WP_155379307.1|3750536_3752060_-|STAS-domain-containing-protein
MPDPAAAPVPVDGPPEADRAWSVRAALRSPARLRTEVLAGLVVALALIPEAIAFSIIAGVDPRVGLFASFTMAVTIAVVGGRPAMISAATGAVALVVAPVVREHGVEYLLATVVLAGVLQVVLGLAGVARLMRFIPRSVMVGFVNALAILIFTSQLTHLVDVPWVVYALVAAGIAIMVLLPRFTTVVPAPLVAIVLLTVLVVAAGIVVPTVGDEGALPESLPTLLVPDVPFTLETLQIVLPYALAMAVVGLLESLMTAKLVDEVTDTHSDKTRESWGQGVANVVTGFFGGMGGCAMIGQTMINVKVSGARTRISTFLAGVFLLALCVGLGDVVAIMPMAALVAVMVMVAVGTFDWHSLRTLRRMPLSETAVMVSTVAVTVATHNLAYGVGVGVLVATVLFARRVAHLTSVTRLDASDDDGTRVYAVEGALFFASSNDLVHRFDYAGDPARVVIDLSRAHVWDASTVAALDAIRTRYAARGTQVEFVGVNADSRARLDRLAGTLGAGH
>NZ_CP045245.1|WP_155378617.1|3752266_3752644_+|MerR-family-transcriptional-regulator
MTDEPPTTMHIGAVAERTGLSLRTLRHYDEVGLLRPSARTDGGFRLYTDADVERLLLIRRMKPLGFTLEEMADLLAVTDRIAAGDVDEGVRAQLAGHLAAARERRADLARRLAMADEFIALLEAR
>NZ_CP045245.1|WP_155378618.1|3752678_3753119_-|Na+/H+-antiporter-subunit-G
MSEEQWTLVADVVSVVCLLGGAFFVLAAGAGALRFPDLLSRMHAGTKPQTLGLILVLVGLALRLREGGAVWALVLVAVFQMLTAPVAAHMVGRAGYRTGKVRHDLLVVDELTRDLRAAGNDATDDPESGEATGPDAPEPDGVVGPR
>NZ_CP045245.1|WP_155379308.1|3753147_3753588_-|pH-regulation-protein-F
MDVVVGVSAVLLTLGATFAVVRAEKGPSMLDRTVALDIVVTAMVAAVALYAAARRRADVVPILVVLSLVGFVGSVTIARFASVEPEGEGRVRTREEVAAEEAERRRREQEEEARRRRRHVPESTQDTVEDEPDAESHGGGAEGEVR
>NZ_CP045245.1|WP_155378619.1|3753593_3754172_-|Na+/H+-antiporter-subunit-E
MSLHPRRGSLRTQWPTVLWLTAVWVLLWGDVTLGNVVNGALLGVVVTVGLRMTPIDLRGRVRPGALAVLVGRFLVDLVRASFEVSWVALRPRHTPRGAVVCVQLRSHSDLYLTLTAELVSLVPGSLVVEAHRLTGRLYIHVLDVETSGGVEAARRSVLEQEERLLRALASDEELAEAGLAPGRGRNRAEVAR
>NZ_CP045245.1|WP_155378620.1|3754168_3755752_-|Na+/H+-antiporter-subunit-D
MTTDWTWLVPLPVVLPLSAAGLTLALARRPRLQRIVTVVALSAVLVVSAGLLVLADGGPVVVDVGGWAAPVGIDLVADRLSALMLTVSSAVTLCVLLYSLAQGQQDGESGAPVSIYHPTYLVLSAGVANAFLSGDLFNIYVGFEILLAASYVLISLSGTGERIRAGTVYVVVSILSSILFLVAIGAVYAATGTLNLAQLALRLPEVDPGVRLVLQVALLLAFGIKAAVFPLSAWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTQSLLFPEGRVDDVLMVLALATMLVGILGAVAQDDVKRLLSFTLVSHIGYMVFGIALGTETGWTAAIYYVVHHITVQTALFLVVGLVERYGGTTSLDRLGGLAKLAPVLAVLFFVPAMNLAGIPPLSGFLGKVGLLEAGVAVGTPLAYTLVVGSVVTSLLTLYALVKAWNKAFWQTPPEELPRTRVPATMAVPAGALVTVGLALTVFAGPLYSYTERAAETLIERTPYVEAVLPDGRRGLGESADVAETDDEPGSDDAVEVEP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP045245_1	1.1\|1456198\|17\|NZ_CP045245\|CRISPRCasFinder	1456198-1456214	17	NZ_CP045245.1	872943-872959	1	0.941
NZ_CP045245_1	1.2\|1456240\|20\|NZ_CP045245\|CRISPRCasFinder	1456240-1456259	20	NZ_CP045245.1	1456270-1456289	1	0.95

1. spacer 1.1|1456198|17|NZ_CP045245|CRISPRCasFinder matches to position: 872943-872959, mismatch: 1, identity: 0.941

tccggaccgagggggtc	CRISPR spacer
tccggaccgagggagtc	Protospacer
*************.***

2. spacer 1.2|1456240|20|NZ_CP045245|CRISPRCasFinder matches to position: 1456270-1456289, mismatch: 1, identity: 0.95

cagcgcgcacggacccgacg	CRISPR spacer
cagcgcgcaccgacccgacg	Protospacer
********** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045245_1	1.2\|1456240\|20\|NZ_CP045245\|CRISPRCasFinder	1456240-1456259	20	NZ_CP021368	Acidovorax carolinensis strain P4 plasmid pACP4.2, complete sequence	2694-2713	1	0.95
NZ_CP045245_1	1.2\|1456240\|20\|NZ_CP045245\|CRISPRCasFinder	1456240-1456259	20	NZ_CP021368	Acidovorax carolinensis strain P4 plasmid pACP4.2, complete sequence	159189-159208	1	0.95
NZ_CP045245_1	1.2\|1456240\|20\|NZ_CP045245\|CRISPRCasFinder	1456240-1456259	20	NZ_CP021364	Acidovorax carolinensis strain P3 plasmid pACP3.2, complete sequence	21776-21795	1	0.95
NZ_CP045245_2	2.1\|3745874\|28\|NZ_CP045245\|CRISPRCasFinder	3745874-3745901	28	NC_010851	Streptomyces sp. FR1 plasmid pFRL1, complete sequence	34048-34075	5	0.821
NZ_CP045245_2	2.1\|3745874\|28\|NZ_CP045245\|CRISPRCasFinder	3745874-3745901	28	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	481666-481693	7	0.75

1. spacer 1.2|1456240|20|NZ_CP045245|CRISPRCasFinder matches to NZ_CP021368 (Acidovorax carolinensis strain P4 plasmid pACP4.2, complete sequence) position: , mismatch: 1, identity: 0.95

cagcgcgcacggacccgacg	CRISPR spacer
gagcgcgcacggacccgacg	Protospacer
 *******************

2. spacer 1.2|1456240|20|NZ_CP045245|CRISPRCasFinder matches to NZ_CP021368 (Acidovorax carolinensis strain P4 plasmid pACP4.2, complete sequence) position: , mismatch: 1, identity: 0.95

cagcgcgcacggacccgacg	CRISPR spacer
gagcgcgcacggacccgacg	Protospacer
 *******************

3. spacer 1.2|1456240|20|NZ_CP045245|CRISPRCasFinder matches to NZ_CP021364 (Acidovorax carolinensis strain P3 plasmid pACP3.2, complete sequence) position: , mismatch: 1, identity: 0.95

cagcgcgcacggacccgacg	CRISPR spacer
gagcgcgcacggacccgacg	Protospacer
 *******************

4. spacer 2.1|3745874|28|NZ_CP045245|CRISPRCasFinder matches to NC_010851 (Streptomyces sp. FR1 plasmid pFRL1, complete sequence) position: , mismatch: 5, identity: 0.821

cctccgccgggaccctcctccgccgcga	CRISPR spacer
tcaccgccgagaccctcatccgccgcta	Protospacer
.* ******.******* ******** *

5. spacer 2.1|3745874|28|NZ_CP045245|CRISPRCasFinder matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 7, identity: 0.75

cctccgccgggaccctcctccgccgcga	CRISPR spacer
aggccgcccggaccctccaccgccgccc	Protospacer
   ***** ********* *******

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage