CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP046306	Staphylococcus hominis strain FDAARGOS_746 chromosome, complete genome	0 crisprs	cas3,csa3,WYL,DEDDh,DinG	12
NZ_CP046305	Staphylococcus hominis strain FDAARGOS_746 plasmid unnamed2, complete sequence	0 crisprs	csa3,WYL	2
NZ_CP046304	Staphylococcus hominis strain FDAARGOS_746 plasmid unnamed1, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

31379 : 53951

Staphylococcus_phage(90.91%)

head,capsid,portal,terminase,holin,protease,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155974727.1\|31379_32297_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6JNM6	Staphylococcus_phage	1.5e-64	61.5
WP_033080057.1\|32343_32727_-\|holin	phage holin family protein	H9A0W5	Staphylococcus_phage	3.1e-16	38.6
WP_155974728.1\|32788_34066_-	DUF2479 domain-containing protein	A0A1J0MFQ3	Staphylococcus_phage	1.5e-136	57.2
WP_155974729.1\|34083_35112_-	SGNH/GDSL hydrolase family protein	Q8LTH0	Staphylococcus_virus	1.3e-98	55.8
WP_066031995.1\|35122_35704_-	hypothetical protein	A0A1J0MFH9	Staphylococcus_phage	5.9e-27	49.6
WP_033080028.1\|35684_35903_-	hypothetical protein	A0A1J0MF94	Staphylococcus_phage	1.8e-05	69.4
WP_049426048.1\|37070_37898_-\|tail	phage tail family protein	A0A2I6PDE7	Staphylococcus_phage	1.2e-97	60.4
WP_155974730.1\|37897_43846_-\|tail	phage tail tape measure protein	R4WAN6	Staphylococcus_phage	0.0e+00	58.6
WP_155974731.1\|44087_44429_-	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	3.7e-37	70.3
WP_002493697.1\|44472_44703_-	hypothetical protein	W5RA14	Staphylococcus_phage	1.6e-07	39.2
WP_155974732.1\|44718_45474_-\|tail	phage tail protein	A0A2K9VBP7	Staphylococcus_phage	1.2e-85	70.6
WP_155974733.1\|45513_45909_-	hypothetical protein	A0A0K1LKC0	Staphylococcus_phage	1.6e-39	58.0
WP_155974734.1\|45905_46313_-	hypothetical protein	A0A2I6PF54	Staphylococcus_phage	1.3e-33	57.9
WP_155974735.1\|46309_46642_-	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	1.6e-29	56.0
WP_155974736.1\|46651_46930_-\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	9.6e-28	65.2
WP_155974738.1\|47000_48158_-\|capsid	phage major capsid protein	M9QQM0	Staphylococcus_phage	4.2e-149	69.8
WP_155974739.1\|48170_48890_-\|protease	Clp protease ClpP	M1TAZ4	Staphylococcus_phage	1.5e-88	67.7
WP_155974741.1\|48846_50112_-\|portal	phage portal protein	A0A2I6PF26	Staphylococcus_phage	3.0e-193	79.7
WP_155974742.1\|50116_51808_-\|terminase	terminase large subunit	M9QX14	Staphylococcus_phage	8.1e-287	83.6
WP_002493706.1\|51797_52106_-\|terminase	terminase	U5U414	Staphylococcus_phage	5.4e-40	82.4
WP_155974744.1\|52245_52560_-	HNH endonuclease	A0A2I6PDC4	Staphylococcus_phage	3.0e-38	74.0
WP_155974745.1\|52667_53240_-	hypothetical protein	NA	NA	NA	NA
WP_155974747.1\|53459_53951_-	RNA polymerase subunit sigma-70	S5MAA9	Brevibacillus_phage	7.9e-09	31.5

DBSCAN-SWA_2

57854 : 69396

Bacillus_phage(50.0%)

integrase

attL 66290:66304|attR 74012:74026

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155974754.1\|57854_58550_+	hypothetical protein	U3PE05	Staphylococcus_phage	7.9e-71	55.1
WP_155974755.1\|59204_60872_-	hypothetical protein	A0A1B1P7M5	Bacillus_phage	1.5e-203	63.6
WP_155974756.1\|60970_61405_+	hypothetical protein	NA	NA	NA	NA
WP_155974757.1\|61444_61927_-	DUF669 domain-containing protein	A0A1B1P7N3	Bacillus_phage	7.7e-33	49.4
WP_155974758.1\|61972_62179_-	hypothetical protein	NA	NA	NA	NA
WP_155974760.1\|62211_64032_-	AAA family ATPase	A0A1B1P7N0	Bacillus_phage	2.9e-165	58.1
WP_155974761.1\|64032_64329_-	VRR-NUC domain-containing protein	A0A1B1P7M6	Bacillus_phage	4.0e-24	56.0
WP_155974763.1\|64312_65575_-	ATP-dependent helicase	A0A1B1P7L4	Bacillus_phage	3.9e-132	56.3
WP_155974764.1\|65750_65930_-	hypothetical protein	A0A2H4JAZ6	uncultured_Caudovirales_phage	1.9e-08	59.3
WP_155974766.1\|65946_66225_-	hypothetical protein	NA	NA	NA	NA
WP_046309364.1\|66284_66476_-	helix-turn-helix transcriptional regulator	A0A2I6PEL6	Staphylococcus_phage	8.6e-20	69.8
66290:66304	attL	NA	NA	NA	NA
WP_155974767.1\|66637_66979_+	helix-turn-helix domain-containing protein	A0A2I6PEN2	Staphylococcus_phage	1.7e-26	58.7
WP_155974769.1\|67515_68205_+	hypothetical protein	NA	NA	NA	NA
WP_155974770.1\|68271_69396_+\|integrase	tyrosine-type recombinase/integrase	A0A0C5AN64	Paenibacillus_phage	1.0e-35	30.0
74012:74026	attR	NA	NA	NA	NA

DBSCAN-SWA_3

311465 : 319935

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155974869.1\|311465_312032_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.8e-28	40.9
WP_087437017.1\|312034_313063_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.9e-65	43.6
WP_049335477.1\|313055_314540_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.6e-47	32.6
WP_002448158.1\|314518_316708_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.1e-137	37.8
WP_071860026.1\|316700_317372_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_002448160.1\|317373_317634_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_002448194.1\|317633_318338_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FUQ7	Synechococcus_phage	3.6e-47	44.2
WP_155974870.1\|318341_319466_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_002448044.1\|319452_319935_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.6e-22	44.7

DBSCAN-SWA_4

348824 : 396966

Staphylococcus_phage(84.44%)

integrase,head,transposase,portal,terminase,holin,protease,tail

attL 384524:384539|attR 389229:389244

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155974884.1\|348824_349112_-\|holin	holin	H9A0Q1	Staphylococcus_phage	1.2e-46	97.9
WP_155974885.1\|349167_349698_-	hypothetical protein	A0A1W6JPB5	Staphylococcus_phage	1.6e-10	33.2
WP_155974886.1\|349694_350201_-	hypothetical protein	A0A1W6JPS0	Staphylococcus_phage	4.3e-58	68.5
WP_155974887.1\|350242_351271_-	hypothetical protein	NA	NA	NA	NA
WP_155974888.1\|352696_354634_-	CHAP domain-containing protein	H9A0P7	Staphylococcus_phage	0.0e+00	96.4
WP_002500204.1\|354683_355175_-\|holin	phage holin family protein	H9A0P6	Staphylococcus_phage	3.9e-80	100.0
WP_155974889.1\|355196_356393_-	DUF2479 domain-containing protein	H9A0P5	Staphylococcus_phage	4.4e-210	92.7
WP_155974890.1\|356405_358280_-	DUF2817 domain-containing protein	H9A0P4	Staphylococcus_phage	0.0e+00	99.5
WP_145443714.1\|358290_359541_-	hypothetical protein	H9A0P3	Staphylococcus_phage	7.2e-224	99.0
WP_145443716.1\|359550_360507_-\|tail	phage tail family protein	H9A0P2	Staphylococcus_phage	6.2e-183	99.1
WP_155974891.1\|360519_363912_-	hypothetical protein	H9A0P1	Staphylococcus_phage	0.0e+00	98.2
WP_017175548.1\|363911_364277_-	hypothetical protein	H9A0P0	Staphylococcus_phage	5.6e-60	99.2
WP_016064899.1\|364306_364678_-\|tail	tail assembly protein	H9A0N9	Staphylococcus_phage	8.0e-62	100.0
WP_016064898.1\|364746_365346_-\|tail	phage major tail protein, TP901-1 family	H9A0N8	Staphylococcus_phage	3.0e-82	100.0
WP_100442567.1\|365360_365756_-	hypothetical protein	H9A0N7	Staphylococcus_phage	3.8e-70	100.0
WP_016064896.1\|365766_366117_-	hypothetical protein	H9A0N6	Staphylococcus_phage	1.3e-61	100.0
WP_016064895.1\|366106_366421_-	hypothetical protein	H9A0N5	Staphylococcus_phage	2.8e-52	100.0
WP_155974892.1\|366417_366753_-\|head,tail	phage head-tail adapter protein	H9A0N4	Staphylococcus_phage	2.2e-55	99.1
WP_016064893.1\|366780_367692_-	hypothetical protein	H9A0N3	Staphylococcus_phage	8.6e-166	100.0
WP_155974893.1\|367707_368319_-	DUF4355 domain-containing protein	H9A0N2	Staphylococcus_phage	5.2e-34	85.1
WP_155974894.1\|368596_369634_-\|head	phage head morphogenesis protein	H9A0N1	Staphylococcus_phage	1.9e-177	93.0
WP_155974895.1\|369617_371069_-\|portal	phage portal protein	H9A0N0	Staphylococcus_phage	2.3e-253	99.0
WP_155974896.1\|371069_372359_-\|terminase	PBSX family phage terminase large subunit	H9A0M9	Staphylococcus_phage	4.0e-225	98.9
WP_145447465.1\|372361_372787_-\|terminase	terminase small subunit	H9A0M8	Staphylococcus_phage	1.7e-68	95.7
WP_155974897.1\|373026_373440_-	transcriptional regulator	I1W651	Staphylococcus_phage	4.7e-55	82.5
WP_155974898.1\|373443_373941_-	hypothetical protein	H9A0M5	Staphylococcus_phage	6.2e-86	95.8
WP_155975752.1\|374209_374341_-	transcriptional regulator	A0A1W6JNK3	Staphylococcus_phage	2.8e-06	55.8
WP_155974899.1\|374392_374596_-	hypothetical protein	NA	NA	NA	NA
WP_155974900.1\|374635_375181_-	dUTPase	H9A0T6	Staphylococcus_phage	2.3e-94	93.9
WP_155974901.1\|375180_375402_-	hypothetical protein	NA	NA	NA	NA
WP_061815657.1\|375385_375601_-	hypothetical protein	NA	NA	NA	NA
WP_155974902.1\|375722_375971_-	hypothetical protein	A0A1J0MFK9	Staphylococcus_phage	8.9e-25	61.0
WP_155974903.1\|375963_376860_-	DnaD domain protein	A0EWX4	Staphylococcus_phage	7.6e-66	60.3
WP_155974904.1\|376891_377434_-	HNH endonuclease	A0A1W6JNF8	Staphylococcus_phage	8.1e-63	63.5
WP_155974905.1\|377447_377906_-	single-stranded DNA-binding protein	H9A0L6	Staphylococcus_phage	7.5e-62	79.9
WP_155974906.1\|378508_379213_-	MBL fold metallo-hydrolase	H9A0L4	Staphylococcus_phage	4.0e-86	96.9
WP_155974907.1\|379212_380148_-	recombinase	A0A2H4JDY2	uncultured_Caudovirales_phage	4.2e-144	98.1
WP_155974908.1\|380149_382099_-	AAA family ATPase	A0A0N9SKM4	Staphylococcus_phage	0.0e+00	94.6
WP_155974909.1\|382373_382688_-	DUF771 domain-containing protein	U3PBP3	Staphylococcus_phage	4.4e-05	34.8
WP_155974910.1\|382735_382927_+	hypothetical protein	NA	NA	NA	NA
WP_131566283.1\|383075_383843_-	hypothetical protein	H9A0Q8	Staphylococcus_phage	6.6e-119	85.8
WP_155974911.1\|383842_384799_-	hypothetical protein	H9A0Q6	Staphylococcus_phage	8.9e-65	63.2
384524:384539	attL	NA	NA	NA	NA
WP_155974912.1\|384904_385150_-	helix-turn-helix domain-containing protein	A1BTY7	Staphylococcus_virus	2.6e-29	80.0
WP_131566277.1\|385326_385662_+	helix-turn-helix transcriptional regulator	A0A2H4J8V1	uncultured_Caudovirales_phage	1.0e-31	66.7
WP_155974913.1\|385674_386139_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4JE34	uncultured_Caudovirales_phage	9.0e-79	92.2
WP_155974914.1\|386154_386832_+	hypothetical protein	A0A1J0MG42	Staphylococcus_phage	9.2e-24	32.1
WP_155974915.1\|386879_387932_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JGN1	uncultured_Caudovirales_phage	1.4e-124	63.1
WP_155974916.1\|388226_388847_-	hypothetical protein	NA	NA	NA	NA
WP_155974917.1\|388934_390176_-	Fic family protein	Q9AZ49	Lactococcus_phage	1.7e-44	32.3
389229:389244	attR	NA	NA	NA	NA
WP_155974918.1\|390338_391480_-\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	1.8e-72	98.6
WP_087437206.1\|391593_392583_-	lipoate--protein ligase	NA	NA	NA	NA
WP_002448045.1\|392771_392948_+	DUF2187 domain-containing protein	NA	NA	NA	NA
WP_155974919.1\|392963_393566_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002488327.1\|393729_395088_-	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_155974920.1\|395106_396966_-\|protease	trypsin-like serine protease	A0A1B1IRD3	uncultured_Mediterranean_phage	1.6e-09	26.0

DBSCAN-SWA_5

571309 : 584448

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002455626.1\|571309_572080_-	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	7.6e-14	30.1
WP_002449066.1\|572076_573036_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	2.2e-10	72.0
WP_002449086.1\|573025_573994_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	2.9e-148	86.0
WP_002455627.1\|574178_575147_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.8e-175	93.5
WP_002488027.1\|575260_577366_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	92.3
WP_002449085.1\|577328_577727_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.7e-54	75.8
WP_002449096.1\|578464_579331_+	DMT family transporter	NA	NA	NA	NA
WP_155974975.1\|579341_579842_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	3.2e-50	70.1
WP_155974976.1\|580141_581647_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.2e-57	32.5
WP_002449080.1\|581775_582699_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA
WP_002449087.1\|582761_583298_-	5'-3'-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	3.4e-29	38.4
WP_049335048.1\|583392_584448_-	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	1.1e-23	24.7

DBSCAN-SWA_6

597105 : 603679

Pandoravirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155974980.1\|597105_598248_-	aminodeoxychorismate synthase component I	A0A0B5J984	Pandoravirus	2.3e-22	39.1
WP_002455637.1\|598231_598825_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.9e-34	39.1
WP_002449071.1\|599157_599835_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.8e-66	56.1
WP_002449084.1\|599831_600251_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	1.8e-06	28.7
WP_155974981.1\|600250_600967_+	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	4.7e-50	41.5
WP_155974982.1\|601075_601684_+	hypothetical protein	NA	NA	NA	NA
WP_002449575.1\|601729_602713_-	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	1.0e-63	43.4
WP_155974983.1\|602839_603679_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	8.4e-59	42.9

DBSCAN-SWA_7

749059 : 755998

Staphylococcus_phage(42.86%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155975045.1\|749059_749488_-\|terminase	terminase small subunit	H9A0M8	Staphylococcus_phage	1.3e-44	66.2
WP_155975046.1\|749513_749753_-\|terminase	terminase small subunit	S6B9Y6	Thermus_phage	2.2e-12	46.8
WP_155975047.1\|749807_750329_-	hypothetical protein	NA	NA	NA	NA
WP_002488624.1\|750340_750574_-	hypothetical protein	NA	NA	NA	NA
WP_155975048.1\|750566_751406_-	pathogenicity island protein	A0A2H4JD56	uncultured_Caudovirales_phage	6.1e-33	36.4
WP_048762055.1\|751459_752257_-	cell division protein ZapE	A0A2H4JCH7	uncultured_Caudovirales_phage	1.2e-67	49.1
WP_155975049.1\|752269_753067_-	DnaD domain protein	A0A0D4DCE1	Staphylococcus_phage	2.9e-40	82.7
WP_061544344.1\|753338_753653_-	DUF1474 family protein	A0A1W6JQH0	Staphylococcus_phage	2.4e-11	42.9
WP_155975050.1\|753652_754051_-	hypothetical protein	NA	NA	NA	NA
WP_155975051.1\|754106_754298_-	hypothetical protein	NA	NA	NA	NA
WP_155975052.1\|754372_754642_-	DNA-binding protein	NA	NA	NA	NA
WP_155975053.1\|754644_754815_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_155975054.1\|754986_755664_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002468636.1\|755764_755998_+	hypothetical protein	Q4ZCB8	Staphylococcus_virus	1.5e-26	72.7

DBSCAN-SWA_8

1387335 : 1426435

Bacillus_phage(14.29%)

holin,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155975341.1\|1387335_1388118_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_155975342.1\|1388140_1388950_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_070716588.1\|1389079_1389742_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	2.1e-20	34.8
WP_155975343.1\|1389734_1390511_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_155975344.1\|1390642_1391818_+	MFS transporter	NA	NA	NA	NA
WP_155975345.1\|1391866_1393216_-	carboxylesterase family protein	K7YIA2	Megavirus	8.0e-19	32.2
WP_155975346.1\|1393317_1394961_-	amino acid permease	NA	NA	NA	NA
WP_002448606.1\|1395259_1396315_-	2,3-butanediol dehydrogenase	A0A2K9L7I1	Tupanvirus	1.8e-10	24.5
WP_155975347.1\|1396761_1398060_+\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	2.4e-20	51.6
WP_002454886.1\|1398059_1398695_+	ABC transporter permease	NA	NA	NA	NA
WP_155975348.1\|1398719_1399658_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_049413998.1\|1399660_1400338_+	ABC transporter permease	NA	NA	NA	NA
WP_049382405.1\|1400401_1401103_-\|holin	antiholin-like protein LrgB	NA	NA	NA	NA
WP_002448480.1\|1401102_1401558_-\|holin	antiholin-like murein hydrolase modulator LrgA	NA	NA	NA	NA
WP_002448373.1\|1401792_1402563_-	DNA-binding response regulator	NA	NA	NA	NA
WP_155975349.1\|1402563_1404318_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	3.2e-60	30.3
WP_155975350.1\|1404583_1405984_+	MFS transporter	NA	NA	NA	NA
WP_155975351.1\|1406237_1407170_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_002448580.1\|1407270_1407744_+	DUF1440 domain-containing protein	NA	NA	NA	NA
WP_002448436.1\|1407799_1408642_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_155975352.1\|1408739_1410233_-	serine hydrolase	NA	NA	NA	NA
WP_155975353.1\|1410505_1412332_+	amino acid permease	NA	NA	NA	NA
WP_155975354.1\|1412385_1414482_-	sodium:proton antiporter	NA	NA	NA	NA
WP_155975355.1\|1414614_1416015_-	amino acid permease	NA	NA	NA	NA
WP_155975356.1\|1416322_1417135_+	phosphohydrolase	NA	NA	NA	NA
WP_002448367.1\|1417187_1417799_-	hypothetical protein	NA	NA	NA	NA
WP_002454897.1\|1418338_1419004_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA
WP_002454898.1\|1419229_1420426_-	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_155975357.1\|1420566_1421286_-	hypothetical protein	NA	NA	NA	NA
WP_155975358.1\|1421301_1422447_-	glycerate kinase	W6LM47	Streptococcus_phage	2.9e-54	42.7
WP_155975359.1\|1422597_1424094_+	hypothetical protein	NA	NA	NA	NA
WP_155975360.1\|1424096_1424477_+	GtrA family protein	NA	NA	NA	NA
WP_155975361.1\|1424758_1426435_+\|transposase	IS1182-like element ISSep1 family transposase	A0ZS58	Staphylococcus_virus	7.2e-243	77.4

DBSCAN-SWA_9

1604930 : 1652289

uncultured_Caudovirales_phage(51.61%)

capsid,head,portal,terminase,holin,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155975428.1\|1604930_1606328_-	recombinase family protein	A0A2H4JD28	uncultured_Caudovirales_phage	1.5e-257	95.6
WP_155975429.1\|1606387_1606963_-	hypothetical protein	A0A2H4IYV6	uncultured_Caudovirales_phage	4.2e-17	68.6
WP_155975430.1\|1606979_1607441_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JDZ1	uncultured_Caudovirales_phage	3.0e-74	88.2
WP_155975431.1\|1607455_1607788_-	helix-turn-helix domain-containing protein	A0A1W6JNP1	Staphylococcus_phage	2.5e-51	94.5
WP_048680775.1\|1607966_1608209_+	helix-turn-helix transcriptional regulator	A0A1W6JNS4	Staphylococcus_phage	7.1e-35	91.0
WP_155975432.1\|1608221_1609016_+	phage antirepressor Ant	A0A2H4J5J5	uncultured_Caudovirales_phage	1.4e-111	76.5
WP_155975433.1\|1609028_1609175_+	hypothetical protein	NA	NA	NA	NA
WP_155975434.1\|1609230_1609392_+	hypothetical protein	NA	NA	NA	NA
WP_155975435.1\|1609372_1609576_-	hypothetical protein	NA	NA	NA	NA
WP_070436625.1\|1610126_1610333_-	hypothetical protein	A0A141VTR0	Staphylococcus_phage	1.1e-25	91.0
WP_155975436.1\|1610477_1610678_+	hypothetical protein	A0A2H4JHT9	uncultured_Caudovirales_phage	5.5e-17	84.2
WP_070548374.1\|1610745_1610982_+	hypothetical protein	H9A0L1	Staphylococcus_phage	1.9e-32	86.8
WP_155975437.1\|1610974_1611460_+	hypothetical protein	H9A0R4	Staphylococcus_phage	5.5e-79	99.4
WP_155975438.1\|1611460_1612249_+	AAA family ATPase	Q4ZBM5	Staphylococcus_phage	1.9e-137	96.6
WP_155975439.1\|1612277_1612802_+	DUF669 domain-containing protein	A9CR64	Staphylococcus_phage	5.1e-62	67.8
WP_142836628.1\|1612816_1613512_+	hypothetical protein	A9CR65	Staphylococcus_phage	1.3e-105	77.9
WP_155975440.1\|1613486_1613726_+	helix-turn-helix domain-containing protein	A0A2H4J5H7	uncultured_Caudovirales_phage	2.9e-33	94.7
WP_155975441.1\|1613722_1614442_+	helix-turn-helix domain-containing protein	A0A2H4JDN4	uncultured_Caudovirales_phage	1.5e-93	92.4
WP_155975442.1\|1614454_1615225_+	AAA domain-containing protein	A0A2H4JAY9	uncultured_Caudovirales_phage	8.3e-130	91.0
WP_049379173.1\|1615372_1615615_+	hypothetical protein	A0A2H4J5E3	uncultured_Caudovirales_phage	3.7e-36	90.0
WP_155975443.1\|1615625_1616054_+	phage N-6-adenine-methyltransferase	A0A1W6JQI9	Staphylococcus_phage	4.4e-72	89.8
WP_049414093.1\|1616050_1616377_+	VRR-NUC domain-containing protein	H9A0S4	Staphylococcus_phage	7.5e-56	99.1
WP_155975444.1\|1616363_1616777_+	hypothetical protein	A0A060AF22	Staphylococcus_phage	9.6e-40	65.2
WP_049414095.1\|1616776_1616959_+	hypothetical protein	H9A0S6	Staphylococcus_phage	1.0e-25	98.3
WP_155975445.1\|1616963_1617170_+	hypothetical protein	H9A0S7	Staphylococcus_phage	7.3e-33	95.5
WP_155975446.1\|1617163_1617379_+	hypothetical protein	A0A2H4JBC1	uncultured_Caudovirales_phage	7.4e-28	91.9
WP_145432761.1\|1617356_1617560_+	hypothetical protein	NA	NA	NA	NA
WP_155975447.1\|1617572_1618253_+	hypothetical protein	A0A2H4JEF6	uncultured_Caudovirales_phage	2.1e-129	97.3
WP_155975448.1\|1618249_1618459_+	hypothetical protein	A0A2H4JCG7	uncultured_Caudovirales_phage	5.2e-18	68.9
WP_070835702.1\|1618445_1618868_+	hypothetical protein	W5RVA2	Staphylococcus_phage	2.3e-36	63.2
WP_136714993.1\|1618882_1619227_+	nuclease	H9A0T3	Staphylococcus_phage	9.7e-62	98.2
WP_155975449.1\|1619229_1619538_+	hypothetical protein	NA	NA	NA	NA
WP_155975450.1\|1619538_1619874_+	hypothetical protein	A0A2H4J5D3	uncultured_Caudovirales_phage	1.2e-11	91.7
WP_155975451.1\|1619866_1620109_+	hypothetical protein	NA	NA	NA	NA
WP_155975452.1\|1620101_1620317_+	hypothetical protein	W5R9H2	Staphylococcus_phage	1.1e-31	93.0
WP_155975453.1\|1620309_1620813_+	dUTP pyrophosphatase	A0A0N9S8K4	Staphylococcus_phage	6.6e-67	76.4
WP_155975454.1\|1620849_1621161_+	hypothetical protein	A0A1W6JNQ0	Staphylococcus_phage	3.8e-49	93.2
WP_155975455.1\|1621157_1621541_+	hypothetical protein	A0A0N9BB01	Staphylococcus_phage	1.6e-36	61.3
WP_155975456.1\|1621546_1621756_+	hypothetical protein	A0A2H4JAQ2	uncultured_Caudovirales_phage	4.8e-16	52.2
WP_155975457.1\|1621761_1622040_+	hypothetical protein	H9A0M2	Staphylococcus_phage	9.6e-44	97.8
WP_155975458.1\|1622032_1622215_+	hypothetical protein	A0A2H4JE83	uncultured_Caudovirales_phage	6.9e-19	80.0
WP_049414113.1\|1622214_1622643_+	hypothetical protein	NA	NA	NA	NA
WP_049414115.1\|1622647_1622875_+	hypothetical protein	A0A2H4J5F6	uncultured_Caudovirales_phage	1.8e-16	59.5
WP_032603858.1\|1622878_1623067_+	DUF1514 domain-containing protein	A0A2H4J470	uncultured_Caudovirales_phage	7.9e-26	98.4
WP_017175415.1\|1623080_1623479_+	hypothetical protein	A0A2H4JDL5	uncultured_Caudovirales_phage	7.2e-69	100.0
WP_155975459.1\|1623617_1623944_+	HNH endonuclease	A0A2H4JAW8	uncultured_Caudovirales_phage	9.8e-56	97.2
WP_049431338.1\|1624159_1624519_+	hypothetical protein	A0A2H4JBX8	uncultured_Caudovirales_phage	2.4e-47	82.2
WP_155975460.1\|1624515_1626177_+\|terminase	terminase large subunit	A0A2H4JDH7	uncultured_Caudovirales_phage	0.0e+00	97.3
WP_155975461.1\|1626196_1627342_+\|portal	phage portal protein	A0A2H4J5C5	uncultured_Caudovirales_phage	3.0e-208	95.0
WP_155975462.1\|1627334_1628186_+\|protease	Clp protease ClpP	A0A2H4J8Y7	uncultured_Caudovirales_phage	5.4e-130	89.2
WP_053022042.1\|1628247_1629426_+\|capsid	phage major capsid protein	A0A2H4JHT8	uncultured_Caudovirales_phage	2.5e-218	99.0
WP_037540961.1\|1629443_1629740_+	hypothetical protein	A0A2H4JFZ6	uncultured_Caudovirales_phage	6.2e-49	99.0
WP_017175423.1\|1629729_1630101_+\|head,tail	phage head-tail adapter protein	A0A2H4J5E7	uncultured_Caudovirales_phage	9.7e-68	100.0
WP_155975463.1\|1630090_1630513_+	hypothetical protein	A0A2H4J781	uncultured_Caudovirales_phage	3.0e-73	97.9
WP_037540964.1\|1630509_1630917_+	hypothetical protein	A0A2H4JBV0	uncultured_Caudovirales_phage	6.7e-70	99.3
WP_037540965.1\|1630917_1631532_+\|tail	phage tail protein	A0A2H4JET0	uncultured_Caudovirales_phage	7.2e-108	96.1
WP_011276043.1\|1631776_1632139_+	hypothetical protein	A0A2H4J5B3	uncultured_Caudovirales_phage	9.5e-60	100.0
WP_017175428.1\|1632186_1632342_+	hypothetical protein	A0A2H4J5B6	uncultured_Caudovirales_phage	1.3e-21	98.0
WP_155975464.1\|1632402_1639065_+\|tail	phage tail tape measure protein	A0A2H4J8X5	uncultured_Caudovirales_phage	0.0e+00	76.5
WP_155975465.1\|1639065_1640556_+\|tail	phage tail protein	A0A0D4DCC8	Staphylococcus_phage	1.1e-247	83.1
WP_155975466.1\|1640571_1642608_+	hypothetical protein	A0A0D4DCQ3	Staphylococcus_phage	0.0e+00	92.8
WP_155975467.1\|1642594_1645645_+	hypothetical protein	A0A1W6JPT1	Staphylococcus_phage	8.4e-149	57.7
WP_155975468.1\|1645821_1646121_+	hypothetical protein	A0A0D4DBZ1	Staphylococcus_phage	1.9e-42	90.9
WP_155975469.1\|1646132_1646624_+\|holin	holin	H9A0W5	Staphylococcus_phage	3.9e-64	81.0
WP_155975470.1\|1646664_1647171_+	hypothetical protein	A0A1W6JPS0	Staphylococcus_phage	8.6e-59	69.1
WP_155975774.1\|1647167_1647698_+	hypothetical protein	A0A1W6JPB5	Staphylococcus_phage	4.1e-11	31.1
WP_071859722.1\|1647753_1648047_+\|holin	phage holin	H9A0X3	Staphylococcus_phage	4.8e-46	99.0
WP_155975471.1\|1648057_1649509_+	CHAP domain-containing protein	H9A0X4	Staphylococcus_phage	2.3e-277	95.0
WP_029376784.1\|1650876_1652289_+	6-phospho-beta-galactosidase	A0A0B5JD41	Pandoravirus	8.6e-48	29.6

DBSCAN-SWA_10

1910159 : 1946757

Staphylococcus_phage(96.15%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049430795.1\|1910159_1911554_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.4e-175	62.6
WP_064207013.1\|1911554_1912562_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	9.3e-97	52.1
WP_002449651.1\|1912552_1912798_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	5.7e-32	72.6
WP_155975553.1\|1912865_1913339_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.2e-47	55.1
WP_155975554.1\|1913319_1914099_+	prolyl oligopeptidase family serine peptidase	A0A2H4PQM6	Staphylococcus_phage	6.5e-106	74.8
WP_155975555.1\|1914139_1915732_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	2.0e-263	83.0
WP_002449627.1\|1916117_1917314_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.3e-201	88.9
WP_002449668.1\|1917412_1918324_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	3.2e-96	77.4
WP_155975556.1\|1918439_1919273_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	9.1e-122	74.4
WP_002455169.1\|1919333_1919687_-	CrcB family protein	NA	NA	NA	NA
WP_002488424.1\|1919683_1920049_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.3e-32	60.2
WP_155975557.1\|1920089_1920398_-	hypothetical protein	NA	NA	NA	NA
WP_002455171.1\|1920643_1921357_+	transaldolase	M1PR54	Cyanophage	1.5e-19	35.5
WP_002449665.1\|1921555_1922020_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	6.6e-13	37.3
WP_002449640.1\|1921994_1922441_-	competence protein ComK	NA	NA	NA	NA
WP_002455172.1\|1922427_1922874_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	2.6e-27	50.3
WP_002449634.1\|1923121_1923346_+	hypothetical protein	NA	NA	NA	NA
WP_037554400.1\|1923592_1924441_+	autolysin	H9A0W8	Staphylococcus_phage	1.2e-36	39.8
WP_155975558.1\|1924738_1926226_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.2e-17	80.7
WP_155975559.1\|1926635_1927679_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	3.4e-134	66.5
WP_155975560.1\|1927685_1928318_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.2e-83	71.9
WP_155975561.1\|1928329_1929514_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.3e-177	77.2
WP_002455177.1\|1929526_1929985_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.6e-59	87.3
WP_155975562.1\|1930036_1931038_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	2.3e-127	68.1
WP_155975563.1\|1931246_1932074_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_002449620.1\|1932394_1932796_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_002455180.1\|1932855_1933416_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	2.9e-71	71.4
WP_155975564.1\|1933412_1934372_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	7.3e-67	83.3
WP_155975565.1\|1934483_1935668_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	1.0e-179	81.9
WP_049418249.1\|1935972_1938387_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	88.6
WP_002449646.1\|1938405_1938717_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	9.7e-37	74.8
WP_155975566.1\|1938963_1946757_+	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	8.2e-07	28.1

DBSCAN-SWA_11

2128239 : 2136482

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155975625.1\|2128239_2130048_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.6e-54	36.8
WP_155975627.1\|2130321_2131428_+	RNA polymerase sigma factor RpoD	F4YCU2	Synechococcus_phage	1.1e-37	37.6
WP_155975629.1\|2131531_2132221_+\|tRNA	tRNA methyltransferase	NA	NA	NA	NA
WP_155975632.1\|2132210_2133314_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	2.6e-07	29.0
WP_002449896.1\|2133338_2134685_+	DEAD/DEAH box helicase	A0A1V0SBR7	Catovirus	4.2e-52	33.0
WP_002449740.1\|2134694_2135585_+	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	1.6e-28	32.8
WP_071860146.1\|2135705_2136482_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.9e-21	30.0

DBSCAN-SWA_12

2182552 : 2194730

uncultured_Mediterranean_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002449875.1\|2182552_2183461_-	aldo/keto reductase	A0A1V0SKP9	Klosneuvirus	9.9e-05	32.5
WP_155975662.1\|2183542_2184085_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_002449777.1\|2184185_2184632_+	transcriptional repressor	NA	NA	NA	NA
WP_002449900.1\|2184798_2185686_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	2.7e-39	32.8
WP_155975664.1\|2185711_2186215_-	DUF309 domain-containing protein	NA	NA	NA	NA
WP_019835226.1\|2186313_2187045_+	segregation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.7e-10	25.8
WP_080978517.1\|2187031_2187571_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	7.4e-08	29.2
WP_017176278.1\|2187572_2188310_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_155975666.1\|2188517_2189243_+	response regulator	W8CYM9	Bacillus_phage	2.2e-47	42.0
WP_155975668.1\|2189223_2190993_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	3.6e-19	26.6
WP_002449844.1\|2191430_2191976_+	ECF transporter S component	NA	NA	NA	NA
WP_002449743.1\|2192059_2192308_-	ferredoxin	A0A127AYY7	Bacillus_phage	5.8e-16	49.3
WP_002455317.1\|2192404_2193370_+	hypothetical protein	NA	NA	NA	NA
WP_155975670.1\|2193350_2194730_+	RecQ family ATP-dependent DNA helicase	M1PGQ0	Moumouvirus	3.2e-55	34.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046305

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 1515

Clostridium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000635275.1\|198_810_-	recombinase family protein	A0A0A8WIK3	Clostridium_phage	6.0e-14	31.9
WP_000690624.1\|936_1515_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	8.4e-42	51.7

DBSCAN-SWA_2

10832 : 24347

Streptococcus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002387626.1\|10832_11768_-	replication initiator protein A	Q9MCM7	Streptococcus_virus	1.1e-19	47.1
WP_002387625.1\|12207_12936_+	DUF536 domain-containing protein	NA	NA	NA	NA
WP_138936986.1\|13377_15072_+\|transposase	IS1182-like element ISSep1 family transposase	A0ZS58	Staphylococcus_virus	7.2e-243	77.4
WP_134943509.1\|15154_16333_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	4.1e-59	36.7
WP_002447403.1\|16698_17112_-	universal stress protein	NA	NA	NA	NA
WP_002447402.1\|17124_18576_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.3e-120	51.4
WP_002447401.1\|18690_19233_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_051607825.1\|20229_20649_+	ParA family protein	A0A1X9I765	Streptococcus_phage	2.9e-20	43.1
WP_000774717.1\|20651_20930_+	hypothetical protein	NA	NA	NA	NA
WP_000627290.1\|21689_22232_+	streptothricin N-acetyltransferase Sat4	A0A1B0RXL7	Streptococcus_phage	8.9e-94	100.0
WP_001096887.1\|22324_23119_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
WP_078154339.1\|23751_23967_+	WYL domain-containing protein	E4ZFP5	Streptococcus_phage	3.4e-33	98.6
WP_072387101.1\|23939_24347_+	WYL domain-containing protein	A0A1B0RXM3	Streptococcus_phage	1.1e-59	98.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046306

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046305

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection