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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046307 Enterococcus gallinarum strain FDAARGOS_728 chromosome, complete genome 6 crisprs cas3,DinG,csa3,WYL,cas14j,DEDDh 0 1 4 0

Results visualization

1. NZ_CP046307
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046307_1 29471-29588 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046307_2 1058448-1058547 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046307_3 1979746-1979850 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046307_4 2732718-2732793 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046307_5 2794377-2794497 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046307_6 3103214-3103303 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046307_4 4.1|2732741|30|NZ_CP046307|CRISPRCasFinder 2732741-2732770 30 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 550471-550500 6 0.8
NZ_CP046307_4 4.1|2732741|30|NZ_CP046307|CRISPRCasFinder 2732741-2732770 30 NZ_CP016623 Parageobacillus thermoglucosidasius strain Wild Type plasmid pNCI001, complete sequence 67074-67103 7 0.767
NZ_CP046307_4 4.1|2732741|30|NZ_CP046307|CRISPRCasFinder 2732741-2732770 30 NC_015665 Parageobacillus thermoglucosidasius C56-YS93 plasmid pGEOTH01, complete sequence 79757-79786 7 0.767
NZ_CP046307_4 4.1|2732741|30|NZ_CP046307|CRISPRCasFinder 2732741-2732770 30 NZ_CP032824 Arcobacter cryaerophilus ATCC 43158 plasmid pACRY43158, complete sequence 48534-48563 7 0.767
NZ_CP046307_4 4.1|2732741|30|NZ_CP046307|CRISPRCasFinder 2732741-2732770 30 NZ_MK715471 Arcobacter cryaerophilus strain M830MA plasmid pM830MA, complete sequence 157504-157533 7 0.767
NZ_CP046307_4 4.1|2732741|30|NZ_CP046307|CRISPRCasFinder 2732741-2732770 30 CP002294 Geobacillus sp. Y4.1MC1 plasmid pGY4MC101, complete sequence 44074-44103 8 0.733

1. spacer 4.1|2732741|30|NZ_CP046307|CRISPRCasFinder matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.8

gagcaagttttctagataaagagaaaagta	CRISPR spacer
aggcacgttttctaaataaagagaaacgca	Protospacer
..*** ********.*********** *.*

2. spacer 4.1|2732741|30|NZ_CP046307|CRISPRCasFinder matches to NZ_CP016623 (Parageobacillus thermoglucosidasius strain Wild Type plasmid pNCI001, complete sequence) position: , mismatch: 7, identity: 0.767

gagcaagttttctagataaagagaaaagta	CRISPR spacer
ttccaagtttactagataaagagaaaaaat	Protospacer
   ******* ****************.  

3. spacer 4.1|2732741|30|NZ_CP046307|CRISPRCasFinder matches to NC_015665 (Parageobacillus thermoglucosidasius C56-YS93 plasmid pGEOTH01, complete sequence) position: , mismatch: 7, identity: 0.767

gagcaagttttctagataaagagaaaagta	CRISPR spacer
ttccaagtttactagataaagagaaaaaat	Protospacer
   ******* ****************.  

4. spacer 4.1|2732741|30|NZ_CP046307|CRISPRCasFinder matches to NZ_CP032824 (Arcobacter cryaerophilus ATCC 43158 plasmid pACRY43158, complete sequence) position: , mismatch: 7, identity: 0.767

gagcaagttttctagataaagagaaaagta	CRISPR spacer
cattaagttttatagataaaaagaaaactt	Protospacer
 * .******* ********.****** * 

5. spacer 4.1|2732741|30|NZ_CP046307|CRISPRCasFinder matches to NZ_MK715471 (Arcobacter cryaerophilus strain M830MA plasmid pM830MA, complete sequence) position: , mismatch: 7, identity: 0.767

gagcaagttttctagataaagagaaaagta	CRISPR spacer
cattaagttttatagataaaaagaaaactt	Protospacer
 * .******* ********.****** * 

6. spacer 4.1|2732741|30|NZ_CP046307|CRISPRCasFinder matches to CP002294 (Geobacillus sp. Y4.1MC1 plasmid pGY4MC101, complete sequence) position: , mismatch: 8, identity: 0.733

gagcaagttttctagataaagagaaaagta	CRISPR spacer
ttccaagtttactagatagagagaaaaaat	Protospacer
   ******* *******.********.  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 102493 : 117429 21 Listeria_phage(23.08%) integrase attL 101986:102000|attR 104888:104902
DBSCAN-SWA_2 823179 : 836824 15 Lactobacillus_phage(30.0%) NA NA
DBSCAN-SWA_3 2700102 : 2709631 7 Only_Syngen_Nebraska_virus(33.33%) tRNA NA
DBSCAN-SWA_4 2968930 : 2999433 47 Lactococcus_phage(48.15%) holin,terminase,capsid,tail,portal,integrase attL 2968785:2968844|attR 3003270:3003356
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage