| NZ_AP019862.1|WP_173019426.1|1174080_1174512_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein |
gnl|CDD|214872 |
smart00869, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.
|
3.57104e-12 |
| NZ_AP019862.1|WP_010977828.1|1178584_1178800_+|translation-initiation-factor-IF-1 |
gnl|CDD|178954 |
PRK00276, infA, translation initiation factor IF-1; Validated.
|
1.11247e-43 |
| NZ_AP019862.1|WP_014014835.1|1171490_1173218_-|cation:proton-antiporter |
gnl|CDD|235131 |
PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.
|
3.11052e-116 |
| NZ_AP019862.1|WP_014014848.1|1184796_1186371_-|SurA-N-terminal-domain-containing-protein |
gnl|CDD|182731 |
PRK10788, PRK10788, periplasmic folding chaperone; Provisional.
|
3.75984e-18 |
| NZ_AP019862.1|WP_014014841.1|1178811_1179459_+|septum-formation-inhibitor-Maf |
gnl|CDD|234957 |
PRK01526, PRK01526, Maf-like protein; Reviewed.
|
1.17893e-144 |
| NZ_AP019862.1|WP_014014834.1|1171018_1171498_-|SH3-domain-containing-protein |
gnl|CDD|226329 |
COG3807, COG3807, Uncharacterized protein conserved in bacteria [Function unknown].
|
9.43176e-83 |
| NZ_AP019862.1|WP_014014850.1|1193152_1195387_-|DNA-translocase-FtsK |
gnl|CDD|224588 |
COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].
|
5.60756e-176 |
| NZ_AP019862.1|WP_014014843.1|1180191_1181109_-|tyrosine-recombinase-XerC |
gnl|CDD|234698 |
PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.
|
7.0419e-130 |
| NZ_AP019862.1|WP_014014847.1|1183212_1184691_-|UbiD-family-decarboxylase |
gnl|CDD|223121 |
COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].
|
0 |
| NZ_AP019862.1|WP_010977838.1|1196327_1197107_+|type-I-methionyl-aminopeptidase |
gnl|CDD|235576 |
PRK05716, PRK05716, methionine aminopeptidase; Validated.
|
5.03986e-161 |
| NZ_AP019862.1|WP_014014836.1|1173214_1173541_-|ribosome-silencing-factor |
gnl|CDD|223870 |
COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].
|
4.4424e-44 |
| NZ_AP019862.1|WP_173019432.1|1197176_1197314_-|palindromic-element-RPE4-domain-containing-protein |
gnl|CDD|274777 |
TIGR03777, RPE4, Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
|
0.000789671 |
| NZ_AP019862.1|WP_014014842.1|1179592_1180024_-|RNA-polymerase-binding-protein-DksA |
gnl|CDD|274124 |
TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].
|
5.25473e-54 |
| NZ_AP019862.1|WP_155980694.1|1186564_1192864_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein |
gnl|CDD|273608 |
TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].
|
5.29434e-49 |
| NZ_AP019862.1|WP_014014852.1|1197356_1197665_+|RadC-family-protein |
gnl|CDD|224914 |
COG2003, RadC, DNA repair proteins [DNA replication, recombination, and repair].
|
8.21463e-27 |
| NZ_AP019862.1|WP_014014845.1|1181619_1182219_-|phospholipase-D-family-protein |
gnl|CDD|197267 |
cd09170, PLDc_Nuc, Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Catalytic domain of an EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Nuc is an endonuclease cleaving both single- and double-stranded DNA. It is the smallest known member of the phospholipase D (PLD, EC 3.1.4.4) superfamily that includes a diverse group of proteins with various catalytic functions. Most members of this superfamily have two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in a single polypeptide chain and both are required for catalytic activity. However, Nuc only has one copy of the HKD motif per subunit but form a functionally active homodimer (it is most likely also active in solution as a multimeric protein), which has a single active site at the dimer interface containing the HKD motifs from both subunits. Due to the lack of a distinct domain for DNA binding, Nuc cuts DNA non-specifically. It utilizes a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit.
|
1.54847e-65 |
| NZ_AP019862.1|WP_012151363.1|1173695_1173935_+|BolA-family-transcriptional-regulator |
gnl|CDD|223349 |
COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms].
|
1.87249e-24 |
| NZ_AP019862.1|WP_004997244.1|1181284_1181572_+|phasin-family-protein |
gnl|CDD|378164 |
pfam09361, Phasin_2, Phasin protein. This entry describes a group of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins.
|
3.19135e-05 |
