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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP037426 Wolbachia pipientis strain wIrr chromosome, complete genome 16 crisprs RT,cas3 9 3 11 0

Results visualization

1. NZ_CP037426
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_1 223178-223301 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_2 262927-263057 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_3 280194-280477 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_4 300026-300477 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_5 316882-316985 Orphan NA
1 spacers
RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_6 327840-327961 Orphan NA
1 spacers
RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_7 547386-547490 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_8 572898-573006 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_9 647225-647338 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_10 659899-660012 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_11 695394-695490 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_12 1164173-1164269 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_13 1229908-1230013 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_14 1242425-1242550 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_15 1296567-1296661 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP037426_16 1341033-1341520 Orphan NA
6 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP037426_16 16.3|1341225|47|NZ_CP037426|CRT 1341225-1341271 47 NZ_CP037426.1 647146-647192 0 1.0
NZ_CP037426_16 16.5|1341379|47|NZ_CP037426|CRT 1341379-1341425 47 NZ_CP037426.1 647146-647192 0 1.0
NZ_CP037426_16 16.6|1341452|43|NZ_CP037426|CRT 1341452-1341494 43 NZ_CP037426.1 533130-533172 0 1.0
NZ_CP037426_16 16.6|1341452|43|NZ_CP037426|CRT 1341452-1341494 43 NZ_CP037426.1 647077-647119 0 1.0
NZ_CP037426_2 2.1|262977|31|NZ_CP037426|CRISPRCasFinder 262977-263007 31 NZ_CP037426.1 572815-572845 1 0.968
NZ_CP037426_7 7.1|547410|57|NZ_CP037426|CRISPRCasFinder 547410-547466 57 NZ_CP037426.1 1331986-1332042 1 0.982
NZ_CP037426_8 8.1|572927|51|NZ_CP037426|CRISPRCasFinder 572927-572977 51 NZ_CP037426.1 1331850-1331900 1 0.98
NZ_CP037426_2 2.1|262977|31|NZ_CP037426|CRISPRCasFinder 262977-263007 31 NZ_CP037426.1 194168-194198 2 0.935
NZ_CP037426_2 2.1|262977|31|NZ_CP037426|CRISPRCasFinder 262977-263007 31 NZ_CP037426.1 300003-300033 2 0.935
NZ_CP037426_2 2.1|262977|31|NZ_CP037426|CRISPRCasFinder 262977-263007 31 NZ_CP037426.1 529271-529301 2 0.935
NZ_CP037426_2 2.1|262977|31|NZ_CP037426|CRISPRCasFinder 262977-263007 31 NZ_CP037426.1 609897-609927 2 0.935
NZ_CP037426_2 2.1|262977|31|NZ_CP037426|CRISPRCasFinder 262977-263007 31 NZ_CP037426.1 768832-768862 2 0.935
NZ_CP037426_3 3.4|280394|41|NZ_CP037426|CRT 280394-280434 41 NZ_CP037426.1 280529-280569 2 0.951
NZ_CP037426_7 7.1|547410|57|NZ_CP037426|CRISPRCasFinder 547410-547466 57 NZ_CP037426.1 947554-947610 2 0.965
NZ_CP037426_8 8.1|572927|51|NZ_CP037426|CRISPRCasFinder 572927-572977 51 NZ_CP037426.1 532859-532909 2 0.961
NZ_CP037426_10 10.1|659928|56|NZ_CP037426|CRISPRCasFinder 659928-659983 56 NZ_CP037426.1 299969-300024 2 0.964
NZ_CP037426_10 10.1|659928|56|NZ_CP037426|CRISPRCasFinder 659928-659983 56 NZ_CP037426.1 609906-609961 2 0.964
NZ_CP037426_12 12.1|1164196|51|NZ_CP037426|CRISPRCasFinder 1164196-1164246 51 NZ_CP037426.1 532939-532989 2 0.961

1. spacer 16.3|1341225|47|NZ_CP037426|CRT matches to position: 647146-647192, mismatch: 0, identity: 1.0

gacgaggtcatgccaccgcgcgaaccgtcataccgtcacggtatctc	CRISPR spacer
gacgaggtcatgccaccgcgcgaaccgtcataccgtcacggtatctc	Protospacer
***********************************************

2. spacer 16.5|1341379|47|NZ_CP037426|CRT matches to position: 647146-647192, mismatch: 0, identity: 1.0

gacgaggtcatgccaccgcgcgaaccgtcataccgtcacggtatctc	CRISPR spacer
gacgaggtcatgccaccgcgcgaaccgtcataccgtcacggtatctc	Protospacer
***********************************************

3. spacer 16.6|1341452|43|NZ_CP037426|CRT matches to position: 533130-533172, mismatch: 0, identity: 1.0

gacgaggtcatgccgccgcaaaccgtcataccgccgcggtatc	CRISPR spacer
gacgaggtcatgccgccgcaaaccgtcataccgccgcggtatc	Protospacer
*******************************************

4. spacer 16.6|1341452|43|NZ_CP037426|CRT matches to position: 647077-647119, mismatch: 0, identity: 1.0

gacgaggtcatgccgccgcaaaccgtcataccgccgcggtatc	CRISPR spacer
gacgaggtcatgccgccgcaaaccgtcataccgccgcggtatc	Protospacer
*******************************************

5. spacer 2.1|262977|31|NZ_CP037426|CRISPRCasFinder matches to position: 572815-572845, mismatch: 1, identity: 0.968

gggatgacgagcttatcgtcatgccaccgcg	CRISPR spacer
gggatgacgagcttatcgtcatgccactgcg	Protospacer
***************************.***

6. spacer 7.1|547410|57|NZ_CP037426|CRISPRCasFinder matches to position: 1331986-1332042, mismatch: 1, identity: 0.982

agcttatcgtcacgccgccacgaaccgtcataccgcgattcattcgcggtatctcag	CRISPR spacer
agcttatcgtcacgccgccacgaactgtcataccgcgattcattcgcggtatctcag	Protospacer
*************************.*******************************

7. spacer 8.1|572927|51|NZ_CP037426|CRISPRCasFinder matches to position: 1331850-1331900, mismatch: 1, identity: 0.98

agcttatcgtcacgccgccacgaaccgtcataccgccgcggcgctaacaag	CRISPR spacer
agcttatcgtcacgctgccacgaaccgtcataccgccgcggcgctaacaag	Protospacer
***************.***********************************

8. spacer 2.1|262977|31|NZ_CP037426|CRISPRCasFinder matches to position: 194168-194198, mismatch: 2, identity: 0.935

gggatgacgagcttatcgtcatgccaccgcg	CRISPR spacer
gggatgacgagcttattgtcatgccgccgcg	Protospacer
****************.********.*****

9. spacer 2.1|262977|31|NZ_CP037426|CRISPRCasFinder matches to position: 300003-300033, mismatch: 2, identity: 0.935

gggatgacgagcttatcgtcatgccaccgcg	CRISPR spacer
gggatgacgagcttatcgtcacgccgccgcg	Protospacer
*********************.***.*****

10. spacer 2.1|262977|31|NZ_CP037426|CRISPRCasFinder matches to position: 529271-529301, mismatch: 2, identity: 0.935

gggatgacgagcttatcgtcatgccaccgcg	CRISPR spacer
gggatgacgagcttatcgtcataccgccgcg	Protospacer
**********************.**.*****

11. spacer 2.1|262977|31|NZ_CP037426|CRISPRCasFinder matches to position: 609897-609927, mismatch: 2, identity: 0.935

gggatgacgagcttatcgtcatgccaccgcg	CRISPR spacer
gggatgacgagcttatcgttatgccgccgcg	Protospacer
*******************.*****.*****

12. spacer 2.1|262977|31|NZ_CP037426|CRISPRCasFinder matches to position: 768832-768862, mismatch: 2, identity: 0.935

gggatgacgagcttatcgtcatgccaccgcg	CRISPR spacer
gggatgatgaacttatcgtcatgccaccgcg	Protospacer
*******.**.********************

13. spacer 3.4|280394|41|NZ_CP037426|CRT matches to position: 280529-280569, mismatch: 2, identity: 0.951

cagcaccattaagccctgcctctagctcttcttttgttgca	CRISPR spacer
cagtaccattaagccctgcctttagctcttcttttgttgca	Protospacer
***.*****************.*******************

14. spacer 7.1|547410|57|NZ_CP037426|CRISPRCasFinder matches to position: 947554-947610, mismatch: 2, identity: 0.965

agcttatcgtcacgccgccacgaaccgtcataccgcgattcattcgcggtatctcag	CRISPR spacer
agcttatcgtcacgccgtcgcgaaccgtcataccgcgattcattcgcggtatctcag	Protospacer
*****************.*.*************************************

15. spacer 8.1|572927|51|NZ_CP037426|CRISPRCasFinder matches to position: 532859-532909, mismatch: 2, identity: 0.961

agcttatcgtcacgccgccacgaaccgtcataccgccgcggcgctaacaag	CRISPR spacer
agcttatcttcatgccgccacgaaccgtcataccgccgcggcgctaacaag	Protospacer
******** ***.**************************************

16. spacer 10.1|659928|56|NZ_CP037426|CRISPRCasFinder matches to position: 299969-300024, mismatch: 2, identity: 0.964

agagataccgcgaatgaatcgcggtatgacggttcgcggcagcatgacgataagct	CRISPR spacer
agagataccgcgaatgaatcgcggtatgacggttcgcggcggcgtgacgataagct	Protospacer
****************************************.**.************

17. spacer 10.1|659928|56|NZ_CP037426|CRISPRCasFinder matches to position: 609906-609961, mismatch: 2, identity: 0.964

agagataccgcgaatgaatcgcggtatgacggttcgcggcagcatgacgataagct	CRISPR spacer
agagataccgcgaatgaatcgcggtatgacggttcgcggcggcataacgataagct	Protospacer
****************************************.****.**********

18. spacer 12.1|1164196|51|NZ_CP037426|CRISPRCasFinder matches to position: 532939-532989, mismatch: 2, identity: 0.961

aattacttgaccgtcattacaccgtcataccgcgattcattcgcggtatct	CRISPR spacer
aattacttaaccatcattacaccgtcataccgcgattcattcgcggtatct	Protospacer
********.***.**************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP037426_3 3.3|280322|29|NZ_CP037426|CRT 280322-280350 29 NZ_CP030844 Acidisarcina polymorpha strain SBC82 plasmid pACPOL3, complete sequence 46638-46666 7 0.759
NZ_CP037426_3 3.3|280322|29|NZ_CP037426|CRT 280322-280350 29 NZ_CP030844 Acidisarcina polymorpha strain SBC82 plasmid pACPOL3, complete sequence 71711-71739 7 0.759
NZ_CP037426_3 3.3|280322|29|NZ_CP037426|CRT 280322-280350 29 NZ_CP024792 Nostoc flagelliforme CCNUN1 plasmid pNFSY07, complete sequence 98715-98743 7 0.759
NZ_CP037426_3 3.3|280322|29|NZ_CP037426|CRT 280322-280350 29 NZ_CP030843 Acidisarcina polymorpha strain SBC82 plasmid pACPOL4, complete sequence 79359-79387 7 0.759
NZ_CP037426_2 2.1|262977|31|NZ_CP037426|CRISPRCasFinder 262977-263007 31 AP014320 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C177, *** SEQUENCING IN PROGRESS *** 3673-3703 8 0.742
NZ_CP037426_13 13.1|1229933|56|NZ_CP037426|CRISPRCasFinder 1229933-1229988 56 MN180249 UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence 19773-19828 10 0.821

1. spacer 3.3|280322|29|NZ_CP037426|CRT matches to NZ_CP030844 (Acidisarcina polymorpha strain SBC82 plasmid pACPOL3, complete sequence) position: , mismatch: 7, identity: 0.759

ttgcagcattaccaatctttacctctagc	CRISPR spacer
ccgtcacattgccaatctttgcctctagc	Protospacer
..*. .****.*********.********

2. spacer 3.3|280322|29|NZ_CP037426|CRT matches to NZ_CP030844 (Acidisarcina polymorpha strain SBC82 plasmid pACPOL3, complete sequence) position: , mismatch: 7, identity: 0.759

ttgcagcattaccaatctttacctctagc	CRISPR spacer
ccgtcacattgccaatctttgcctctagc	Protospacer
..*. .****.*********.********

3. spacer 3.3|280322|29|NZ_CP037426|CRT matches to NZ_CP024792 (Nostoc flagelliforme CCNUN1 plasmid pNFSY07, complete sequence) position: , mismatch: 7, identity: 0.759

ttgcagcattaccaatctttacctctagc	CRISPR spacer
ttgcagcattagcaatatttaccaaactc	Protospacer
*********** **** ******     *

4. spacer 3.3|280322|29|NZ_CP037426|CRT matches to NZ_CP030843 (Acidisarcina polymorpha strain SBC82 plasmid pACPOL4, complete sequence) position: , mismatch: 7, identity: 0.759

ttgcagcattaccaatctttacctctagc	CRISPR spacer
ccgtcacattgccaatctttgcctctagc	Protospacer
..*. .****.*********.********

5. spacer 2.1|262977|31|NZ_CP037426|CRISPRCasFinder matches to AP014320 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C177, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.742

gggatgacgagcttatcgtcatgccaccgcg	CRISPR spacer
aacctgacgtgcttatcgtcacgccactggg	Protospacer
..  ***** ***********.*****.* *

6. spacer 13.1|1229933|56|NZ_CP037426|CRISPRCasFinder matches to MN180249 (UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence) position: , mismatch: 10, identity: 0.821

atctatgctgagataccgcggcggtatgacggttcgcggtggcatgacgataagct	CRISPR spacer
agcggctaagagataccgtgacggtatgacggttcgcggtggcatgacgataagcc	Protospacer
* * ..   *********.*.**********************************.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 204956 : 257944 53 Leptospira_phage(13.33%) tRNA,transposase NA
DBSCAN-SWA_2 267575 : 320222 50 Leptospira_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_3 329695 : 468088 119 Wolbachia_phage(71.83%) portal,tail,terminase,transposase,capsid,plate,head NA
DBSCAN-SWA_4 473217 : 715945 226 Leptospira_phage(20.59%) portal,integrase,tail,protease,terminase,transposase,head,tRNA attL 659928:659967|attR 724209:724248
DBSCAN-SWA_5 727775 : 792484 53 uncultured_Mediterranean_phage(18.18%) protease,tRNA,transposase NA
DBSCAN-SWA_6 800824 : 862681 57 Leptospira_phage(20.0%) integrase,tail,tRNA,transposase attL 808532:808591|attR 849556:850478
DBSCAN-SWA_7 872526 : 995472 112 Leptospira_phage(21.43%) protease,tRNA,transposase NA
DBSCAN-SWA_8 1032635 : 1060393 31 Leptospira_phage(28.57%) tRNA,terminase,transposase NA
DBSCAN-SWA_9 1065864 : 1123804 56 Wolbachia_phage(28.57%) integrase,tRNA,transposase attL 1071110:1071169|attR 1091494:1092415
DBSCAN-SWA_10 1140481 : 1182939 39 Leptospira_phage(42.86%) tRNA,protease,transposase NA
DBSCAN-SWA_11 1202877 : 1314981 113 Leptospira_phage(22.73%) protease,tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage