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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046528 Lactobacillus acetotolerans strain CN247 chromosome, complete genome 5 crisprs cas1,cas2,csn2,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,csa3 0 12 6 0

Results visualization

1. NZ_CP046528
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046528_1 208827-209478 TypeII NA
9 spacers
cas9,cas1,cas2,csn2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046528_2 215947-217038 TypeII NA
16 spacers
csn2,cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046528_3 391517-391730 TypeI-E I-B,III-A,III-B
3 spacers
cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046528_4 401231-401990 TypeI-E I-B,III-A,III-B
12 spacers
DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046528_5 965746-965847 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046528_1 1.5|209127|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 209127-209156 30 NC_007807 Pseudomonas phage 119X, complete genome 42984-43013 6 0.8
NZ_CP046528_1 1.5|209127|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 209127-209156 30 DQ163914 Bacteriophage 119X, complete genome 42984-43013 6 0.8
NZ_CP046528_2 2.8|216445|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 216445-216474 30 NZ_CP016317 Bacillus cereus strain M3 plasmid pBCM301, complete sequence 219440-219469 6 0.8
NZ_CP046528_2 2.8|216445|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 216445-216474 30 NC_018492 Bacillus cereus FRI-35 plasmid p01, complete sequence 30841-30870 6 0.8
NZ_CP046528_1 1.3|208995|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 208995-209024 30 AP018399 Xanthomonas phage XacN1 DNA, complete genome 176263-176292 7 0.767
NZ_CP046528_1 1.4|209061|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 209061-209090 30 MH617278 Microviridae sp. isolate ctcg764, complete genome 1178-1207 7 0.767
NZ_CP046528_1 1.5|209127|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 209127-209156 30 AP018320 Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome 307371-307400 7 0.767
NZ_CP046528_1 1.7|209259|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 209259-209288 30 KX507046 Vibrio phage S4-7, complete genome 25509-25538 7 0.767
NZ_CP046528_2 2.2|216049|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 216049-216078 30 NZ_CP022523 Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence 1131642-1131671 7 0.767
NZ_CP046528_2 2.10|216577|30|NZ_CP046528|CRISPRCasFinder,CRT 216577-216606 30 AB711120 Bacillus phage PM1 DNA, complete genome 12359-12388 7 0.767
NZ_CP046528_2 2.16|216973|30|NZ_CP046528|CRISPRCasFinder,CRT 216973-217002 30 MN794232 Vibrio phage VH1_2019, complete genome 54333-54362 7 0.767
NZ_CP046528_1 1.3|208995|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 208995-209024 30 NC_014535 Gloeothece verrucosa PCC 7822 plasmid Cy782206, complete sequence 8637-8666 8 0.733
NZ_CP046528_1 1.4|209061|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 209061-209090 30 MH616850 Microviridae sp. isolate ctch832, complete genome 1139-1168 8 0.733
NZ_CP046528_1 1.6|209193|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 209193-209222 30 NZ_CP017955 Lactobacillus plantarum strain C410L1 plasmid unnamed1, complete sequence 61602-61631 8 0.733
NZ_CP046528_1 1.6|209193|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 209193-209222 30 NZ_CP025417 Lactobacillus plantarum strain X7021 plasmid unnamed5, complete sequence 32435-32464 8 0.733
NZ_CP046528_1 1.6|209193|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 209193-209222 30 NZ_CP015858 Lactobacillus plantarum strain LZ227 plasmid LZ227p1, complete sequence 51518-51547 8 0.733
NZ_CP046528_1 1.6|209193|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 209193-209222 30 NZ_CP017956 Lactobacillus plantarum strain C410L1 plasmid unnamed2, complete sequence 29914-29943 8 0.733
NZ_CP046528_1 1.6|209193|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 209193-209222 30 MT457553 Shewanella phage Thanatos-2, complete genome 60003-60032 8 0.733
NZ_CP046528_1 1.6|209193|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 209193-209222 30 MT457552 Shewanella phage Thanatos-1, complete genome 56606-56635 8 0.733
NZ_CP046528_1 1.7|209259|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 209259-209288 30 NZ_CP054609 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed1, complete sequence 199627-199656 8 0.733
NZ_CP046528_1 1.7|209259|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 209259-209288 30 KT895374 Bacillus phage vB_BpuM-BpSp, complete genome 198239-198268 8 0.733
NZ_CP046528_2 2.12|216709|30|NZ_CP046528|CRISPRCasFinder,CRT,PILER-CR 216709-216738 30 NZ_CP030855 Runella sp. HYN0085 plasmid unnamed5, complete sequence 22309-22338 8 0.733
NZ_CP046528_2 2.16|216973|30|NZ_CP046528|CRISPRCasFinder,CRT 216973-217002 30 JN849462 Vibriophage phi-pp2, complete genome 54933-54962 8 0.733
NZ_CP046528_4 4.4|401443|33|NZ_CP046528|CRISPRCasFinder,CRT 401443-401475 33 LC168164 Tenacibaculum phage pT24 DNA, complete genome 192530-192562 8 0.758
NZ_CP046528_1 1.1|208863|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT 208863-208892 30 NZ_CP044263 Campylobacter armoricus strain CA639 plasmid pCA639-2, complete sequence 3330-3359 9 0.7
NZ_CP046528_4 4.4|401443|33|NZ_CP046528|CRISPRCasFinder,CRT 401443-401475 33 KU599879 Flavobacterium phage Fpv3, complete genome 6908-6940 9 0.727
NZ_CP046528_4 4.4|401443|33|NZ_CP046528|CRISPRCasFinder,CRT 401443-401475 33 MK764441 Flavobacterium phage FPSV-F12, complete genome 8301-8333 9 0.727
NZ_CP046528_4 4.4|401443|33|NZ_CP046528|CRISPRCasFinder,CRT 401443-401475 33 KU599886 Flavobacterium phage Fpv20, complete genome 7714-7746 9 0.727
NZ_CP046528_4 4.4|401443|33|NZ_CP046528|CRISPRCasFinder,CRT 401443-401475 33 KT876726 Flavobacterium phage FpV21, complete genome 7715-7747 9 0.727
NZ_CP046528_4 4.4|401443|33|NZ_CP046528|CRISPRCasFinder,CRT 401443-401475 33 KT876724 Flavobacterium phage FpV4, complete genome 6849-6881 9 0.727
NZ_CP046528_4 4.4|401443|33|NZ_CP046528|CRISPRCasFinder,CRT 401443-401475 33 MK764449 Flavobacterium phage FPSV-S29, complete genome 7947-7979 9 0.727

1. spacer 1.5|209127|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to NC_007807 (Pseudomonas phage 119X, complete genome) position: , mismatch: 6, identity: 0.8

aaaacgaggcttatttagaagccgaggatc	CRISPR spacer
taaccctggctgatttagaagccgaggttc	Protospacer
 ** *  **** *************** **

2. spacer 1.5|209127|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to DQ163914 (Bacteriophage 119X, complete genome) position: , mismatch: 6, identity: 0.8

aaaacgaggcttatttagaagccgaggatc	CRISPR spacer
taaccctggctgatttagaagccgaggttc	Protospacer
 ** *  **** *************** **

3. spacer 2.8|216445|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016317 (Bacillus cereus strain M3 plasmid pBCM301, complete sequence) position: , mismatch: 6, identity: 0.8

aacttatcaaaaaagggaggacgtacccta----	CRISPR spacer
aacttatcaaaaaagtgaggatgt----taaagt	Protospacer
*************** *****.**    **    

4. spacer 2.8|216445|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to NC_018492 (Bacillus cereus FRI-35 plasmid p01, complete sequence) position: , mismatch: 6, identity: 0.8

aacttatcaaaaaagggaggacgtacccta----	CRISPR spacer
aacttatcaaaaaagtgaggatgt----taaagt	Protospacer
*************** *****.**    **    

5. spacer 1.3|208995|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 7, identity: 0.767

atctcacttgggtctttagtcttctgccca	CRISPR spacer
ctctcacttgggtctttaatcttgttcgtc	Protospacer
 *****************.**** * * . 

6. spacer 1.4|209061|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to MH617278 (Microviridae sp. isolate ctcg764, complete genome) position: , mismatch: 7, identity: 0.767

ggctgtctaagccttgttgataggctgctt	CRISPR spacer
ttctgtttaagccttgttgataggttagat	Protospacer
  ****.*****************.*.  *

7. spacer 1.5|209127|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to AP018320 (Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome) position: , mismatch: 7, identity: 0.767

aaaacgaggcttatttagaagccgaggatc	CRISPR spacer
atgaggaggctgatttagaagcagaggaat	Protospacer
* .* ****** ********** ***** .

8. spacer 1.7|209259|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to KX507046 (Vibrio phage S4-7, complete genome) position: , mismatch: 7, identity: 0.767

tccatacctttattacggaagaatttatac	CRISPR spacer
attttatccttattacggaagaatttataa	Protospacer
 .. **.*.******************** 

9. spacer 2.2|216049|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 7, identity: 0.767

taattgcctgtgagagtaagacagagagat	CRISPR spacer
tgtttccctgtgagagtaagacaaagcggg	Protospacer
*. ** *****************.** *. 

10. spacer 2.10|216577|30|NZ_CP046528|CRISPRCasFinder,CRT matches to AB711120 (Bacillus phage PM1 DNA, complete genome) position: , mismatch: 7, identity: 0.767

taacttgactgccttcaaaatcgaacattt	CRISPR spacer
ttacttgactgccttcatattcgaataccc	Protospacer
* *************** * *****.*...

11. spacer 2.16|216973|30|NZ_CP046528|CRISPRCasFinder,CRT matches to MN794232 (Vibrio phage VH1_2019, complete genome) position: , mismatch: 7, identity: 0.767

ttccaaaagagccagtacacgtgccaaccg	CRISPR spacer
caccaaaagagccagtacccgagccaccaa	Protospacer
. **************** ** **** * .

12. spacer 1.3|208995|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to NC_014535 (Gloeothece verrucosa PCC 7822 plasmid Cy782206, complete sequence) position: , mismatch: 8, identity: 0.733

atctcacttgggtctttagtcttctgccca	CRISPR spacer
ggctcacttgggtctttaatcgtctcgcgt	Protospacer
. ****************.** ***  *  

13. spacer 1.4|209061|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to MH616850 (Microviridae sp. isolate ctch832, complete genome) position: , mismatch: 8, identity: 0.733

ggctgtctaagccttgttgataggctgctt	CRISPR spacer
attttggtatgccttgttgataggctgttt	Protospacer
. .*   ** *****************.**

14. spacer 1.6|209193|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017955 (Lactobacillus plantarum strain C410L1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

aaaagctgcaaaagctgatacctatgaagg	CRISPR spacer
gaaagctgcaaaagttgataccagtaagat	Protospacer
.*************.******* .*.*.. 

15. spacer 1.6|209193|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025417 (Lactobacillus plantarum strain X7021 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.733

aaaagctgcaaaagctgatacctatgaagg	CRISPR spacer
gaaagctgcaaaagttgataccagtaagat	Protospacer
.*************.******* .*.*.. 

16. spacer 1.6|209193|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015858 (Lactobacillus plantarum strain LZ227 plasmid LZ227p1, complete sequence) position: , mismatch: 8, identity: 0.733

aaaagctgcaaaagctgatacctatgaagg	CRISPR spacer
gaaagctgcaaaagttgataccagtaagat	Protospacer
.*************.******* .*.*.. 

17. spacer 1.6|209193|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017956 (Lactobacillus plantarum strain C410L1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

aaaagctgcaaaagctgatacctatgaagg	CRISPR spacer
gaaagctgcaaaagttgataccagtaagat	Protospacer
.*************.******* .*.*.. 

18. spacer 1.6|209193|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to MT457553 (Shewanella phage Thanatos-2, complete genome) position: , mismatch: 8, identity: 0.733

aaaagctgcaaaagctgatacctatgaagg	CRISPR spacer
tcgtggtgcaaaaactgatatctatgaaga	Protospacer
  . * *******.******.********.

19. spacer 1.6|209193|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to MT457552 (Shewanella phage Thanatos-1, complete genome) position: , mismatch: 8, identity: 0.733

aaaagctgcaaaagctgatacctatgaagg	CRISPR spacer
tcgtggtgcaaaaactgatatctatgaaga	Protospacer
  . * *******.******.********.

20. spacer 1.7|209259|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054609 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tccatacctttattacggaagaatttatac	CRISPR spacer
tccataccttaattacggaagacgaggaag	Protospacer
********** ***********    . * 

21. spacer 1.7|209259|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to KT895374 (Bacillus phage vB_BpuM-BpSp, complete genome) position: , mismatch: 8, identity: 0.733

tccatacctttattacggaagaatttatac	CRISPR spacer
aaattatctttattacgcaagaatttaaaa	Protospacer
    **.********** ********* * 

22. spacer 2.12|216709|30|NZ_CP046528|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030855 (Runella sp. HYN0085 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.733

attctagaaggtgaagcatgaaactatgga	CRISPR spacer
gtgaataaaggtgaaggaagaaactatgga	Protospacer
.*    .********* * ***********

23. spacer 2.16|216973|30|NZ_CP046528|CRISPRCasFinder,CRT matches to JN849462 (Vibriophage phi-pp2, complete genome) position: , mismatch: 8, identity: 0.733

ttccaaaagagccagtacacgtgccaaccg	CRISPR spacer
caccaaaagagccagtacccgagccgccaa	Protospacer
. **************** ** ***. * .

24. spacer 4.4|401443|33|NZ_CP046528|CRISPRCasFinder,CRT matches to LC168164 (Tenacibaculum phage pT24 DNA, complete genome) position: , mismatch: 8, identity: 0.758

tcaaactaatcaaattcaatttgttgcttatga	CRISPR spacer
acatggtgataaaattcaatttgttgtttatgg	Protospacer
 ** . *.** ***************.*****.

25. spacer 1.1|208863|30|NZ_CP046528|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044263 (Campylobacter armoricus strain CA639 plasmid pCA639-2, complete sequence) position: , mismatch: 9, identity: 0.7

tttacacctgctagaactattaatcctagt	CRISPR spacer
attacacctgctataacttttaatatcgaa	Protospacer
 ************ **** ***** .... 

26. spacer 4.4|401443|33|NZ_CP046528|CRISPRCasFinder,CRT matches to KU599879 (Flavobacterium phage Fpv3, complete genome) position: , mismatch: 9, identity: 0.727

tcaaactaatcaaattcaatttgttgcttatga	CRISPR spacer
tcttgatattctaattcaatttgttgcttaatt	Protospacer
**  . ** ** ******************   

27. spacer 4.4|401443|33|NZ_CP046528|CRISPRCasFinder,CRT matches to MK764441 (Flavobacterium phage FPSV-F12, complete genome) position: , mismatch: 9, identity: 0.727

tcaaactaatcaaattcaatttgttgcttatga	CRISPR spacer
tcttgatattctaattcaatttgttgcttaatt	Protospacer
**  . ** ** ******************   

28. spacer 4.4|401443|33|NZ_CP046528|CRISPRCasFinder,CRT matches to KU599886 (Flavobacterium phage Fpv20, complete genome) position: , mismatch: 9, identity: 0.727

tcaaactaatcaaattcaatttgttgcttatga	CRISPR spacer
tcttgatattctaattcaatttgttgcttaatt	Protospacer
**  . ** ** ******************   

29. spacer 4.4|401443|33|NZ_CP046528|CRISPRCasFinder,CRT matches to KT876726 (Flavobacterium phage FpV21, complete genome) position: , mismatch: 9, identity: 0.727

tcaaactaatcaaattcaatttgttgcttatga	CRISPR spacer
tcttgatattctaattcaatttgttgcttaatt	Protospacer
**  . ** ** ******************   

30. spacer 4.4|401443|33|NZ_CP046528|CRISPRCasFinder,CRT matches to KT876724 (Flavobacterium phage FpV4, complete genome) position: , mismatch: 9, identity: 0.727

tcaaactaatcaaattcaatttgttgcttatga	CRISPR spacer
tcttgatattctaattcaatttgttgcttaatt	Protospacer
**  . ** ** ******************   

31. spacer 4.4|401443|33|NZ_CP046528|CRISPRCasFinder,CRT matches to MK764449 (Flavobacterium phage FPSV-S29, complete genome) position: , mismatch: 9, identity: 0.727

tcaaactaatcaaattcaatttgttgcttatga	CRISPR spacer
tcttgatattctaattcaatttgttgcttaatt	Protospacer
**  . ** ** ******************   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 18937 : 80730 43 Lactobacillus_phage(26.67%) bacteriocin,transposase NA
DBSCAN-SWA_2 283113 : 408058 112 Erysipelothrix_phage(31.91%) protease,tRNA,head,tail,holin,capsid,portal,transposase,terminase NA
DBSCAN-SWA_3 868821 : 932877 47 Staphylococcus_phage(15.79%) integrase,transposase attL 861437:861452|attR 914062:914077
DBSCAN-SWA_4 997512 : 1006188 10 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_5 1462368 : 1542306 54 Staphylococcus_phage(22.22%) transposase NA
DBSCAN-SWA_6 1551393 : 1577692 26 Bacillus_phage(57.14%) protease,head,tail,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage